Items where Subject is "organs, tissues, organelles, cell types and functions"

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Number of items at this level: 725.

A

Abdeladim, L., Matho, K. S., Clavreul, S., Mahou, P., Sintes, J. M., Solinas, X., Arganda-Carreras, I., Turney, S. G., Lichtman, J. W., Chessel, A., Bemelmans, A. P., Loulier, K., Supatto, W., Livet, J., Beaurepaire, E. (April 2019) Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy. Nat Commun, 10 (1). p. 1662. ISSN 2041-1723

Ackermann, Maximilian, Anders, Hans-Joachim, Bilyy, Rostyslav, Bowlin, Gary L, Daniel, Christoph, De Lorenzo, Rebecca, Egeblad, Mikala, Henneck, Timo, Hidalgo, Andrés, Hoffmann, Markus, Hohberger, Bettina, Kanthi, Yogendra, Kaplan, Mariana J, Knight, Jason S, Knopf, Jasmin, Kolaczkowska, Elzbieta, Kubes, Paul, Leppkes, Moritz, Mahajan, Aparna, Manfredi, Angelo A, Maueröder, Christian, Maugeri, Norma, Mitroulis, Ioannis, Muñoz, Luis E, Narasaraju, Teluguakula, Naschberger, Elisabeth, Neeli, Indira, Ng, Lai Guan, Radic, Marko Z, Ritis, Konstantinos, Rovere-Querini, Patrizia, Schapher, Mirco, Schauer, Christine, Simon, Hans-Uwe, Singh, Jeeshan, Skendros, Panagiotis, Stark, Konstantin, Stürzl, Michael, van der Vlag, Johan, Vandenabeele, Peter, Vitkov, Ljubomir, von Köckritz-Blickwede, Maren, Yanginlar, Cansu, Yousefi, Shida, Zarbock, Alexander, Schett, Georg, Herrmann, Martin (May 2021) Patients with COVID-19: in the dark-NETs of neutrophils. Cell Death and Differentiation. ISSN 1350-9047

Adesnik, H., Bruns, W., Taniguchi, H., Huang, Z. J., Scanziani, M. (October 2012) A neural circuit for spatial summation in visual cortex. Nature, 490 (7419). pp. 226-231. ISSN 0028-0836

Adrover, Jose M, Carrau, Lucia, Daßler-Plenker, Juliane, Bram, Yaron, Chandar, Vasuretha, Houghton, Sean, Redmond, David, Merrill, Joseph R, Shevik, Margaret, tenOever, Benjamin R, Lyons, Scott K, Schwartz, Robert E, Egeblad, Mikala (February 2022) Disulfiram inhibits neutrophil extracellular trap formation protecting rodents from acute lung injury and SARS-CoV-2 infection. JCI Insight. ISSN 2379-3708

Adrover, Jose M, McDowell, Sheri AC, He, Xue-Yan, Quail, Daniela F, Egeblad, Mikala (February 2023) NETworking with cancer: The bidirectional interplay between cancer and neutrophil extracellular traps. Cancer Cell. ISSN 1535-6108

Aganezov, S., Goodwin, S., Sherman, R. M., Sedlazeck, F. J., Arun, G., Bhatia, S., Lee, I., Kirsche, M., Wappel, R., Kramer, M., Kostroff, K., Spector, D. L., Timp, W., McCombie, W. R., Schatz, M. C. (September 2020) Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. Genome Res, 30 (9). pp. 1258-1273. ISSN 1088-9051 (Print)1088-9051

Aguirre, Lyndsey (March 2023) Dissection of Quantitative Epistasis in Tomato Meristem Development. PhD thesis, Cold Spring Harbor Laboratory.

Aho, E. R., Wang, J., Gogliotti, R. D., Howard, G. C., Phan, J., Acharya, P., Macdonald, J. D., Cheng, K., Lorey, S. L., Lu, B., Wenzel, S., Foshage, A. M., Alvarado, J., Wang, F., Shaw, J. G., Zhao, B., Weissmiller, A. M., Thomas, L. R., Vakoc, C. R., Hall, M. D., Hiebert, S. W., Liu, Q., Stauffer, S. R., Fesik, S. W., Tansey, W. P. (March 2019) Displacement of WDR5 from Chromatin by a WIN Site Inhibitor with Picomolar Affinity. Cell Reports, 26 (11). 2916-2928.e13. ISSN 22111247 (ISSN)

Ahrens, S., Wu, M., Furlan, A., Hwang, G. R., Paik, R., Li, H., Penzo, M. A., Tollkuhn, J., Li, B. (May 2018) A central extended amygdala circuit that modulates anxiety. J Neurosci, 38 (24). pp. 5567-5583. ISSN 0270-6474

Albrengues, J., Shields, M. A., Ng, D., Park, C. G., Ambrico, A., Poindexter, M. E., Upadhyay, P., Uyeminami, D. L., Pommier, A., Kuttner, V., Bruzas, E., Maiorino, L., Bautista, C., Carmona, E. M., Gimotty, P. A., Fearon, D. T., Chang, K., Lyons, S. K., Pinkerton, K. E., Trotman, L. C., Goldberg, M. S., Yeh, J. T., Egeblad, M. (September 2018) Neutrophil extracellular traps produced during inflammation awaken dormant cancer cells in mice. Science, 361 (6409). ISSN 0036-8075

Alia-Klein, N., Goldstein, R. Z., Kriplani, A., Logan, J., Tomasi, D., Williams, B., Telang, F., Shumay, E., Biegon, A., Craig, I. W., Henn, F., Wang, G. J., Volkow, N. D., Fowler, J. S. (May 2008) Brain monoamine oxidase A activity predicts trait aggression. J Neurosci, 28 (19). pp. 5099-104. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Allen, Ezra, Banta, Arthur Mangun (1929) Growth and maturation in the parthenogenetic and sexual eggs of Moina macrocopa. Journal of Morphology and Physiology, 48 (1). pp. 123-151.

Almeida, Ana S, Fein, Miriam R, Egeblad, Mikala (June 2021) Multi-color Flow Cytometry for Comprehensive Analysis of the Tumor Immune Infiltrate in a Murine Model of Breast Cancer. Bio-protocol, 11 (11). e4012. ISSN 2331-8325

Amor, Corina, Fernández-Maestre, Inés, Chowdhury, Saria, Ho, Yu-Jui, Nadella, Sandeep, Graham, Courtenay, Carrasco, Sebastian E, Nnuji-John, Emmanuella, Feucht, Judith, Hinterleitner, Clemens, Barthet, Valentin JA, Boyer, Jacob A, Mezzadra, Riccardo, Wereski, Matthew G, Tuveson, David A, Levine, Ross L, Jones, Lee W, Sadelain, Michel, Lowe, Scott W (September 2023) Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. Research Square. (Submitted)

Amor, Corina, Fernández-Maestre, Inés, Chowdhury, Saria, Ho, Yu-Jui, Nadella, Sandeep, Graham, Courtenay, Carrasco, Sebastian E, Nnuji-John, Emmanuella, Feucht, Judith, Hinterleitner, Clemens, Barthet, Valentin JA, Boyer, Jacob A, Mezzadra, Riccardo, Wereski, Matthew G, Tuveson, David A, Levine, Ross L, Jones, Lee W, Sadelain, Michel, Lowe, Scott W (January 2024) Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. Nature Aging. ISSN 2662-8465 (Public Dataset)

Anand, Chaitali, Maia, Pedro D, Torok, Justin, Mezias, Christopher, Raj, Ashish (December 2022) The effects of microglia on tauopathy progression can be quantified using Nexopathy in silico (Nexis) models. Scientific Reports, 12 (1). p. 21170. ISSN 2045-2322

Anderson, Erik W, Jin, Ying, Shih, Andrew, Arazi, Arnon, Goodwin, Sara, Roeser, Julien, Furie, Richard A, Aranow, Cynthia, Volpe, Bruce, Diamond, Betty, Mackay, Meggan (November 2022) Associations between circulating interferon and kynurenine/tryptophan pathway metabolites: support for a novel potential mechanism for cognitive dysfunction in SLE. Lupus Science & Medicine, 9 (1). e000808. ISSN 2053-8790

Ango, Fabrice, Gallo, Nicholas Biron, Van Aelst, Linda (April 2021) Molecular mechanisms of axo-axonic innervation. Current Opinion in Neurobiology, 69. pp. 105-112. ISSN 0959-4388

Anttila, V., Bulik-Sullivan, B., Finucane, H. K., Walters, R. K., Bras, J., Duncan, L., Escott-Price, V., Falcone, G. J., Gormley, P., Malik, R., Patsopoulos, N. A., Ripke, S., Wei, Z., Yu, D., Lee, P. H., Turley, P., Grenier-Boley, B., Chouraki, V., Kamatani, Y., Berr, C., Letenneur, L., Hannequin, D., Amouyel, P., Boland, A., Deleuze, J. F., Duron, E., Vardarajan, B. N., Reitz, C., Goate, A. M., Huentelman, M. J., Kamboh, M. I., Larson, E. B., Rogaeva, E., St George-Hyslop, P., Hakonarson, H., Kukull, W. A., Farrer, L. A., Barnes, L. L., Beach, T. G., Demirci, F. Y., Head, E., Hulette, C. M., Jicha, G. A., Kauwe, J. S. K., Kaye, J. A., Leverenz, J. B., Levey, A. I., Lieberman, A. P., Pankratz, V. S., Poon, W. W., Quinn, J. F., Saykin, A. J., Schneider, L. S., Smith, A. G., Sonnen, J. A., Stern, R. A., Van Deerlin, V. M., Van Eldik, L. J., Harold, D., Russo, G., Rubinsztein, D. C., Bayer, A., Tsolaki, M., Proitsi, P., Fox, N. C., Hampel, H., Owen, M. J., Mead, S., Passmore, P., Morgan, K., Nothen, M. M., Rossor, M., Lupton, M. K., Hoffmann, P., Kornhuber, J., Lawlor, B., McQuillin, A., Al-Chalabi, A., Bis, J. C., Ruiz, A., Boada, M., Seshadri, S., Beiser, A., Rice, K., van der Lee, S. J., De Jager, P. L., Geschwind, D. H., Riemenschneider, M., Riedel-Heller, S., Rotter, J. I., Ransmayr, G., Hyman, B. T., Cruchaga, C., Alegret, M., Winsvold, B., Palta, P., Farh, K. H., Cuenca-Leon, E., Furlotte, N., Kurth, T. (June 2018) Analysis of shared heritability in common disorders of the brain. Science, 360 (6395). ISSN 0036-8075

Aranda, V., Nolan, M. E., Muthuswamy, S. K. (November 2008) Par complex in cancer: a regulator of normal cell polarity joins the dark side. Oncogene, 27 (55). pp. 6878-87.

Aravin, A. A., Bourc'his, D. (April 2008) Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes Dev, 22 (8). pp. 970-5.

Aroca-Crevillén, Alejandra, Hidalgo, Andres, Adrover, Jose M (May 2022) In Vivo Imaging of Circadian NET Formation During Lung Injury by Four-Dimensional Intravital Microscopy. In: Methods in Molecular Biology. Springer US, pp. 285-300. ISBN 9781071622483

Arrazola, M. S., Saquel, C., Catalan, R. J., Barrientos, S. A., Hernandez, D. E., Catenaccio, A., Court, F. A. (May 2019) Axonal degeneration is mediated by necroptosis activation Necroptosis mediates axonal degeneration. J Neurosci, 39 (20). pp. 3832-2844. ISSN 0270-6474

Arun, G., Diermeier, S. D., Spector, D. L. (February 2018) Therapeutic Targeting of Long Non-Coding RNAs in Cancer. Trends Mol Med, 24 (3). pp. 257-277. ISSN 1471-4914

Arun, G., Spector, D. L. (March 2019) MALAT1 Long Non-Coding RNA and Breast Cancer. RNA Biol, 16 (6). pp. 860-863. ISSN 1547-6286

Ascoli, GA, Huo, BX, Mitra, PP (January 2022) Sizing up whole-brain neuronal tracing. Science Bulletin. ISSN 2095-9273

Atwal, G. S. (December 2004) Dynamic plasticity in coupled avian midbrain maps. Phys Rev E Stat Nonlin Soft Matter Phys, 70 (6 Pt 1). 061904. ISSN 1539-3755 (Print)1539-3755 (Linking)

Auguste, Yohan SS, Ferro, Austin, Kahng, Jessica A, Xavier, Andre M, Dixon, Jessica R, Vrudhula, Uma, Nichitiu, Anne-Sarah, Rosado, Daniele, Wee, Tse-Luen, Pedmale, Ullas V, Cheadle, Lucas (September 2022) Oligodendrocyte precursor cells engulf synapses during circuit remodeling in mice. Nature Neuroscience. ISSN 1097-6256

B

BRAIN Initiative Cell Census Network (BICCN) (October 2021) A multimodal cell census and atlas of the mammalian primary motor cortex. Nature, 598 (7879). pp. 86-102. ISSN 0028-0836

Baker, A., Kalmbach, B., Morishima, M., Kim, J., Juavinett, A., Li, N., Dembrow, N. (May 2018) Specialized Subpopulations of Deep-Layer Pyramidal Neurons in the Neocortex: Bridging Cellular Properties to Functional Consequences. J Neurosci, 38 (24). pp. 5441-5455. ISSN 0270-6474

Bakin, A. V., Safina, A., Rinehart, C., Daroqui, C., Darbary, H., Helfman, D. M. (October 2004) A critical role of tropomyosins in TGF-beta regulation of the actin cytoskeleton and cell motility in epithelial cells. Molecular Biology of the Cell, 15 (10). pp. 4682-4694. ISSN 1059-1524

Bakken, Trygve E, Jorstad, Nikolas L, Hu, Qiwen, Lake, Blue B, Tian, Wei, Kalmbach, Brian E, Crow, Megan, Hodge, Rebecca D, Krienen, Fenna M, Sorensen, Staci A, Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D, Aldridge, Andrew I, Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Castanon, Rosa G, Crichton, Kirsten, Daigle, Tanya L, Dalley, Rachel, Dee, Nick, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T, Herb, Brian R, Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, van Lew, Baldur, Li, Yang Eric, Liu, Christine S, Liu, Hanqing, Lucero, Jacinta D, Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A, Moussa, Marmar, Nery, Joseph R, Nicovich, Philip R, Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K, Owen, Scott, Palmer, Carter R, Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M, Rimorin, Christine, Rivkin, Angeline, Romanow, William J, Sedeño-Cortés, Adriana E, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A, Behrens, M Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R, Höllt, Thomas, Horwitz, Gregory D, Keene, C Dirk, Kharchenko, Peter V, Ko, Andrew L, Lelieveldt, Boudewijn P, Luo, Chongyuan, Mukamel, Eran A, Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H, Smith, Kimberly, Spain, William J, White, Owen R, Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z, McCarroll, Steven A, Ting, Jonathan T, Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R, Linnarsson, Sten, Lein, Ed S (October 2021) Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature, 598 (7879). pp. 111-119. ISSN 0028-0836

Balinth, Seamus, Fisher, Matthew L, Hwangbo, Yon, Wu, Caizhi, Ballon, Carlos, Sun, Xueqin, Mills, Alea A (July 2022) EZH2 regulates a SETDB1/ΔNp63α axis via RUNX3 to drive a cancer stem cell phenotype in squamous cell carcinoma. Oncogene. ISSN 0950-9232 (Public Dataset)

Ballouz, Sara, Mangala, Melissa M, Perry, Matthew D, Heitmann, Stewart, Gillis, Jesse A, Hill, Adam P, Vandenberg, Jamie I (October 2020) Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events. Cardiovascular Research. ISSN 0008-6363

Banerjee, Amitava, Pattinson, David J, Wincek, Cornelia L, Bunk, Paul, Chapin, Sarah R, Navlakha, Saket, Meyer, Hannah V (January 2024) BATMAN: Improved T cell receptor cross-reactivity prediction benchmarked on a comprehensive mutational scan database. bioRxiv. (Submitted)

Banerjee, Arkarup, Chen, Feng, Druckmann, Shaul, Long, Michael A (January 2024) Temporal scaling of motor cortical dynamics reveals hierarchical control of vocal production. Nature Neuroscience. ISSN 1097-6256

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474

Barnes, B.J., Adrover, J.M., Baxter-Stoltzfus, A., Borczuk, A., Cools-Lartigue, J., Crawford, J.M., DaBler-Plenker, J., Guerci, P., Huynh, C., Knight, J.S., Loda, M., Looney, M.R., McAllister, F., Rayes, R., Renaud, S., Rousseau, S., Salvatore, S., Schwartz, R.E., Spicer, J.D., Yost, C.C., Weber, A., Zuo, Y., Egeblad, M. (June 2020) Targeting Potential Drivers of COVID-19: Neutrophil Extracellular Traps. J Exp Med, 217 (6). e20200652. ISSN 1540-9538

Barnhart, Michael D, Yang, Yi, Nakagaki-Silva, Erick E, Hammond, Thomas H, Pizzinga, Mariavittoria, Gooding, Clare, Stott, Katherine, Smith, Christopher WJ (November 2022) Phosphorylation of the smooth muscle master splicing regulator RBPMS regulates its splicing activity. Nucleic Acids Research, 50 (20). pp. 11895-11915. ISSN 0305-1048

Barth, N. D., Subiros-Funosas, R., Mendive-Tapia, L., Duffin, R., Shields, M. A., Cartwright, J. A., Henriques, S. T., Sot, J., Goñi, F. M., Lavilla, R., Marwick, J. A., Vermeren, S., Rossi, A. G., Egeblad, M., Dransfield, I., Vendrell, M. (August 2020) A fluorogenic cyclic peptide for imaging and quantification of drug-induced apoptosis. Nat Commun, 11 (1). p. 4027. ISSN 2041-1723

Barth, Nicole, Mendive-Tapia, Lorena, Subiros-Funosas, Ramon, Ghashghaie, Ouldouz, Lavilla, Rodolfo, Maiorino, Laura, He, Xue-Yan, Dransfield, Ian, Egeblad, Mikala, Vendrell, Marc (November 2021) A Bivalent Activatable Fluorescent Probe for Screening and Intravital Imaging of Chemotherapy-induced Cancer Cell Death. Angewandte Chemie International Edition. ISSN 1433-7851

Baslan, Timour, Kovaka, Sam, Sedlazeck, Fritz J, Zhang, Yanming, Wappel, Robert, Tian, Sha, Lowe, Scott W, Goodwin, Sara, Schatz, Michael C (September 2021) High resolution copy number inference in cancer using short-molecule nanopore sequencing. Nucleic Acids Research. ISSN 0305-1048

Bast, Walter G, Aghamohammadi, Cina, Gupta, Priyanka, Engel, Tatiana A, Albeanu, Dinu F (2023) An optogenetic stimulation approach to quantify the contribution of individual glomeruli to olfactory percepts. In: UNSPECIFIED.

Bast, Walter Germán, Albeanu, Dinu F (March 2022) Mapping odorant receptors to their glomeruli. Nature Neuroscience. ISSN 1097-6256

Bell, C. C., Fennell, K. A., Chan, Y. C., Rambow, F., Yeung, M. M., Vassiliadis, D., Lara, L., Yeh, P., Martelotto, L. G., Rogiers, A., Kremer, B. E., Barbash, O., Mohammad, H. P., Johanson, T. M., Burr, M. L., Dhar, A., Karpinich, N., Tian, L., Tyler, D. S., MacPherson, L., Shi, J., Pinnawala, N., Yew Fong, C., Papenfuss, A. T., Grimmond, S. M., Dawson, S. J., Allan, R. S., Kruger, R. G., Vakoc, C. R., Goode, D. L., Naik, S. H., Gilan, O., Lam, E. Y. N., Marine, J. C., Prinjha, R. K., Dawson, M. A. (June 2019) Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia. Nat Commun, 10 (1). p. 2723. ISSN 2041-1723

Bell, S. P., Marahrens, Y., Rao, H., Stillman, B. (1993) The replicon model and eukaryotic chromosomes. Cold Spring Harbor Symposia on Quantitative Biology, 58. pp. 435-442. ISSN 00917451 (ISSN)

Bencze, G., Bencze, S., Rivera, K. D., Watson, J. D., Orfi, L., Tonks, N. K., Pappin, D. J. (August 2020) Mito-oncology agent: fermented extract suppresses the Warburg effect, restores oxidative mitochondrial activity, and inhibits in vivo tumor growth. Sci Rep, 10 (1). p. 14174. ISSN 2045-2322

Benitez, Asiel A, Khalil-Agüero, Sara, Nandakumar, Anjali, Gupta, Namita T, Zhang, Wen, Atwal, Gurinder S, Murphy, Andrew J, Sleeman, Matthew A, Haxhinasto, Sokol (July 2020) Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses. Communications Biology, 3 (1). p. 355. ISSN 2399-3642

Bennett, C. F., Krainer, A. R., Cleveland, D. W. (July 2019) Antisense Oligonucleotide Therapies for Neurodegenerative Diseases. Annu Rev Neurosci, 42. pp. 385-406. ISSN 0147-006x

Bennett, Lori, Yang, Ming, Enikolopov, G. N., Iacovitti, Lorraine (June 2009) Circumventricular organs: A novel site of neural stem cells in the adult brain. Molecular and Cellular Neuroscience, 41 (3). pp. 337-347.

Berlow, N. E., Rikhi, R., Geltzeiler, M., Abraham, J., Svalina, M. N., Davis, L. E., Wise, E., Mancini, M., Noujaim, J., Mansoor, A., Quist, M. J., Matlock, K. L., Goros, M. W., Hernandez, B. S., Doung, Y. C., Thway, K., Tsukahara, T., Nishio, J., Huang, E. T., Airhart, S., Bult, C. J., Gandour-Edwards, R., Maki, R. G., Jones, R. L., Michalek, J. E., Milovancev, M., Ghosh, S., Pal, R., Keller, C. (June 2019) Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma. BMC Cancer, 19 (1). p. 593. ISSN 1471-2407 (Public Dataset)

Bestman, J. E., Cline, H. T. (December 2008) The RNA binding protein CPEB regulates dendrite morphogenesis and neuronal circuit assembly in vivo. Proc Natl Acad Sci U S A, 105 (51). 20494-20499 .

Beukema, P., Cecil, K. L., Peterson, E., Mann, V. R., Matsushita, M., Takashima, Y., Navlakha, S., Barth, A. L. (June 2018) TrpM8-mediated somatosensation in mouse neocortex. J Comp Neurol, 526 (9). pp. 1444-1456. ISSN 0021-9967

Beyaz, Semir, Chung, Charlie, Mou, Haiwei, Bauer-Rowe, Khristian E, Xifaras, Michael E, Ergin, Ilgin, Dohnalova, Lenka, Biton, Moshe, Shekhar, Karthik, Eskiocak, Onur, Papciak, Katherine, Ozler, Kadir, Almeqdadi, Mohammad, Yueh, Brian, Fein, Miriam, Annamalai, Damodaran, Valle-Encinas, Eider, Erdemir, Aysegul, Dogum, Karoline, Shah, Vyom, Alici-Garipcan, Aybuke, Meyer, Hannah V, Özata, Deniz M, Elinav, Eran, Kucukural, Alper, Kumar, Pawan, McAleer, Jeremy P, Fox, James G, Thaiss, Christoph A, Regev, Aviv, Roper, Jatin, Orkin, Stuart H, Yilmaz, Ömer H (September 2021) Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis. Cell Stem Cell. ISSN 1934-5909

Beyaz, Semir, Mana, Miyeko D, Yilmaz, Ömer H (April 2021) High-fat diet activates a PPAR-δ program to enhance intestinal stem cell function. Cell Stem Cell, 28 (4). pp. 598-599. ISSN 1934-5909

Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Pal, R., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E., Keller, C. (May 2019) Preclinical rationale for entinostat in embryonal rhabdomyosarcoma. Skelet Muscle, 9 (1). p. 12. ISSN 2044-5040

Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Ishikawa, Y., Zientek, K., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Rudek, M. A., Xu, L., Anders, N. M., Pal, R., Harrold, A. P., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Chatterjee, B., Bachinger, H. P., Barr, F. G., Liddle, J., Garcia, B. A., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E., Keller, C. (November 2018) The HDAC3-SMARCA4-miR-27a axis promotes expression of the PAX3:FOXO1 fusion oncogene in rhabdomyosarcoma. Sci Signal, 11 (557). ISSN 1945-0877

Bhatia, Sonam, Kramer, Melissa, Russo, Suzanne, Naik, Payal, Arun, Gayatri, Brophy, Kyle, Andrews, Peter, Fan, Cheng, Perou, Charles M, Preall, Jonathan, Ha, Taehoon, Plenker, Dennis, Tuveson, David A, Rishi, Arvind, Wilkinson, John E, McCombie, W Richard, Kostroff, Karen, Spector, David L (February 2022) Patient-derived triple-negative breast cancer organoids provide robust model systems that recapitulate tumor-intrinsic characteristics. Cancer Research. ISSN 0008-5472

Biasci, D., Smoragiewicz, M., Connell, C. M., Wang, Z., Gao, Y., Thaventhiran, J. E. D., Basu, B., Magiera, L., Johnson, T. I., Bax, L., Gopinathan, A., Isherwood, C., Gallagher, F. A., Pawula, M., Hudecova, I., Gale, D., Rosenfeld, N., Barmpounakis, P., Popa, E. C., Brais, R., Godfrey, E., Mir, F., Richards, F. M., Fearon, D. T., Janowitz, T., Jodrell, D. I. (November 2020) CXCR4 inhibition in human pancreatic and colorectal cancers induces an integrated immune response. Proc Natl Acad Sci U S A, 117 (46). pp. 28960-28970. ISSN 0027-8424 (Print)0027-8424

Bieler, M, Hussain, S, Daaland, ESB, Mirrione, M. M., Henn, F. A., Davanger, S (April 2021) Changes in concentrations of NMDA receptor subunit GluN2B, Arc and syntaxin-1 in dorsal hippocampus Schaffer collateral synapses in a rat learned helplessness model of depression. The Journal of Comparative Neurology, 529 (12). pp. 3194-3205.

Biffi, G., Oni, T. E., Spielman, B., Hao, Y., Elyada, E., Park, Y., Preall, J., Tuveson, D. A. (October 2018) IL-1-induced JAK/STAT signaling is antagonized by TGF-beta to shape CAF heterogeneity in pancreatic ductal adenocarcinoma. Cancer Discov, 9 (2). pp. 282-301. ISSN 2159-8274

Biffi, G., Tuveson, D. A. (November 2018) Deciphering cancer fibroblasts. J Exp Med. ISSN 0022-1007

Biffi, G., Tuveson, D. A. (May 2019) A FATal Combination: Fibroblast-Derived Lipids and Cancer-Derived Autotaxin Promote Pancreatic Cancer Growth. Cancer Discov, 9 (5). pp. 578-580. ISSN 2159-8274

Biffi, Giulia, Tuveson, David A (January 2021) Diversity and Biology of Cancer-Associated Fibroblasts. Physiological Reviews, 101 (1). pp. 147-176. ISSN 0031-9333

Birbrair, A., Zhang, T., Wang, Z., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (September 2012) Skeletal Muscle Neural Progenitor Cells Exhibit Properties of NG2-Glia. Experimental Cell Research. ISSN 0014-4827

Biton, M., Haber, A. L., Rogel, N., Burgin, G., Beyaz, S., Schnell, A., Ashenberg, O., Su, C. W., Smillie, C., Shekhar, K., Chen, Z., Wu, C., Ordovas-Montanes, J., Alvarez, D., Herbst, R. H., Zhang, M., Tirosh, I., Dionne, D., Nguyen, L. T., Xifaras, M. E., Shalek, A. K., von Andrian, U. H., Graham, D. B., Rozenblatt-Rosen, O., Shi, H. N., Kuchroo, V., Yilmaz, O. H., Regev, A., Xavier, R. J. (October 2018) T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation. Cell, 175 (5). pp. 1307-1320. ISSN 0092-8674

Blakeslee, Albert Francis, Cartledge, J. Lincoln, Welch, Donald S. (October 1921) Sexual dimorphism in Cunninghamella. Botanical Gazette, 72 (4). pp. 185-219.

Blot, Antonin, Roth, Morgane M, Gasler, Ioana, Javadzadeh, Mitra, Imhof, Fabia, Hofer, Sonja B (June 2021) Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Neuron, 109 (12). 1996-2008.e6. ISSN 0896-6273

Boato, Francesco, Guan, Xiaofei, Zhu, Yanjie, Ryu, Youngjae, Voutounou, Mariel, Rynne, Christopher, Freschlin, Chase R, Zumbo, Paul, Betel, Doron, Matho, Katie, Makarov, Sergey N, Wu, Zhuhao, Son, Young-Jin, Nummenmaa, Aapo, Huang, Josh Z, Edwards, Dylan J, Zhong, Jian (January 2023) Activation of MAP2K signaling by genetic engineering or HF-rTMS promotes corticospinal axon sprouting and functional regeneration. Science Translational Medicine, 15 (677). eabq6885. ISSN 1946-6234

Bodineau, Clément, Tomé, Mercedes, Courtois, Sarah, Costa, Ana SH, Sciacovelli, Marco, Rousseau, Benoit, Richard, Elodie, Vacher, Pierre, Parejo-Pérez, Carlos, Bessede, Emilie, Varon, Christine, Soubeyran, Pierre, Frezza, Christian, Murdoch, Piedad Del Socorro, Villar, Victor H, Durán, Raúl V (August 2021) Two parallel pathways connect glutamine metabolism and mTORC1 activity to regulate glutamoptosis. Nature Communications, 12 (1). p. 4814. ISSN 2041-1723

Boettner, B., Van Aelst, L. (October 2009) Control of cell adhesion dynamics by Rap1 signaling. Curr Opin Cell Biol, 21 (5). 684-693 .

Boivin, B., Vaniotis, G., Allen, B. G., Hebert, T. E. (January 2008) G protein-coupled receptors in and on the cell nucleus: a new signaling paradigm? J Recept Signal Transduct Res, 28 (1-2). pp. 15-28.

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Bommert, P., Nagasawa, N. S., Jackson, D. (March 2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdžić, M., Berube, B., Brooks, A., Thompson, W. F., Hanley-Bowdoin, L., Martienssen, R. A. (November 2020) Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31 (3). pp. 591-600. ISSN 0960-9822

Borniger, J. C. (2019) Central regulation of breast cancer growth and metastasis. J Cancer Metastasis Treat, 5. ISSN 2394-4722

Borniger, J. C., Ungerleider, K., Zhang, N., Karelina, K., Magalang, U. J., Weil, Z. M. (April 2018) Repetitive Brain Injury of Juvenile Mice Impairs Environmental Enrichment-Induced Modulation of REM Sleep in Adulthood. Neuroscience, 375. pp. 74-83. ISSN 1873-7544 (Electronic)0306-4522 (Linking)

Borniger, J. C., Walker Ii, W. H., Surbhi, Emmer, K. M., Zhang, N., Zalenski, A. A., Muscarella, S. L., Fitzgerald, J. A., Smith, A. N., Braam, C. J., TinKai, T., Magalang, U. J., Lustberg, M. B., Nelson, R. J., DeVries, A. C. (July 2018) A Role for Hypocretin/Orexin in Metabolic and Sleep Abnormalities in a Mouse Model of Non-metastatic Breast Cancer. Cell Metab, 28 (1). 118-129 e5. ISSN 1932-7420 (Electronic)1550-4131 (Linking)

Borniger, Jeremy C, de Lecea, Luis (2021) Peripheral Lipopolyssacharide Rapidly Silences REM-Active LHGABA Neurons. Frontiers in Behavioral Neuroscience, 15. p. 649428. ISSN 1662-5153

Bosc, M, Bucchioni, G, Ribot, B, Michelet, T (June 2021) Bypassing use-dependent plasticity in the primary motor cortex to preserve adaptive behavior. Scientific reports, 11 (1). p. 12102. ISSN 2045-2322

Bott, A. J., Shen, J., Tonelli, C., Zhan, L., Sivaram, N., Jiang, Y. P., Yu, X., Bhatt, V., Chiles, E., Zhong, H., Maimouni, S., Dai, W., Velasquez, S., Pan, J. A., Muthalagu, N., Morton, J., Anthony, T. G., Feng, H., Lamers, W. H., Murphy, D. J., Guo, J. Y., Jin, J., Crawford, H. C., Zhang, L., White, E., Lin, R. Z., Su, X., Tuveson, D. A., Zong, W. X. (October 2019) Glutamine Anabolism Plays a Critical Role in Pancreatic Cancer by Coupling Carbon and Nitrogen Metabolism. Cell Rep, 29 (5). 1287-1298.e6.

Bottcher, J., Dilworth, D., Reiser, U., Neumuller, R. A., Schleicher, M., Petronczki, M., Zeeb, M., Mischerikow, N., Allali-Hassani, A., Szewczyk, M. M., Li, F., Kennedy, S., Vedadi, M., Barsyte-Lovejoy, D., Brown, P. J., Huber, K. V. M., Rogers, C. M., Wells, C. I., Fedorov, O., Rumpel, K., Zoephel, A., Mayer, M., Wunberg, T., Bose, D., Zahn, S., Arnhof, H., Berger, H., Reiser, C., Hormann, A., Krammer, T., Corcokovic, M., Sharps, B., Winkler, S., Haring, D., Cockcroft, X. L., Fuchs, J. E., Mullauer, B., Weiss-Puxbaum, A., Gerstberger, T., Boehmelt, G., Vakoc, C. R., Arrowsmith, C. H., Pearson, M., McConnell, D. B. (July 2019) Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3. Nat Chem Biol, 15 (8). pp. 822-829. ISSN 1552-4450

Boutchueng-Djidjou, M., Belleau, P., Bilodeau, N., Fortier, S., Bourassa, S., Droit, A., Elowe, S., Faure, R. L. (October 2018) A type 2 diabetes disease module with a high collective influence for Cdk2 and PTPLAD1 is localized in endosomes. PLoS One, 13 (10). e0205180. ISSN 1932-6203

Bradley, Sherille D, Talukder, Amjad H, Lai, Ivy, Davis, Rebecca, Alvarez, Hector, Tiriac, Herve, Zhang, Minying, Chiu, Yulun, Melendez, Brenda, Jackson, Kyle R, Katailiha, Arjun, Sonnemann, Heather M, Li, Fenge, Kang, Yaan, Qiao, Na, Pan, Bih-Fang, Lorenzi, Philip L, Hurd, Mark, Mittendorf, Elizabeth A, Peterson, Christine B, Javle, Milind, Bristow, Christopher, Kim, Michael, Tuveson, David A, Hawke, David, Kopetz, Scott, Wolff, Robert A, Hwu, Patrick, Maitra, Anirban, Roszik, Jason, Yee, Cassian, Lizée, Gregory (October 2020) Vestigial-like 1 is a shared targetable cancer-placenta antigen expressed by pancreatic and basal-like breast cancers. Nature Communications, 11 (1). p. 5332. ISSN 2041-1723

Brooks, L., Strable, J., Zhang, X., Ohtsu, K., Zhou, R., Sarkar, A., Hargreaves, S., Elshire, R. J., Eudy, D., Pawlowska, T., Ware, D. H., Janick-Buckner, D., Buckner, B., Timmermans, M. C. P., Schnable, P. S., Nettleton, D., Scanlon, M. J. (May 2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5 (5). e1000476.

Brown, P., Cervenáková, L., Goldfarb, L. G., McCombie, W. R., Rubenstein, R., Will, R. G., Pocchiari, M., Martinez-Lage, J. F., Scalici, C., Masullo, C., Graupera, G., Ligan, J., Gajdusek, D. C. (1994) Iatrogenic Creutzfeldt-Jakob disease: An example of the interplay between ancient genes and modern medicine. Neurology, 44 (2). pp. 291-293. ISSN 00283878 (ISSN)

Brown, Anna-Leigh, Wilkins, Oscar G, Keuss, Matthew J, Hill, Sarah E, Zanovello, Matteo, Lee, Weaverly Colleen, Bampton, Alexander, Lee, Flora CY, Masino, Laura, Qi, Yue A, Bryce-Smith, Sam, Gatt, Ariana, Hallegger, Martina, Fagegaltier, Delphine, Phatnani, Hemali, NYGC ALS Consortium, Newcombe, Jia, Gustavsson, Emil K, Seddighi, Sahba, Reyes, Joel F, Coon, Steven L, Ramos, Daniel, Schiavo, Giampietro, Fisher, Elizabeth MC, Raj, Towfique, Secrier, Maria, Lashley, Tammaryn, Ule, Jernej, Buratti, Emanuele, Humphrey, Jack, Ward, Michael E, Fratta, Pietro (February 2022) TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A. Nature, 603 (7899). pp. 131-137. ISSN 0028-0836

Brown, Fiona C, Still, Eric, Koche, Richard P, Yim, Christina Y, Takao, Sumiko, Cifani, Paolo, Reed, Casie, Gunasekera, Shehana, Ficarro, Scott B, Romanienko, Peter, Mark, Willie, McCarthy, Craig, de Stanchina, Elisa, Gonen, Mithat, Seshan, Venkatraman, Bhola, Patrick, O'Donnell, Conor, Spitzer, Barbara, Stutzke, Crystal, Lavallée, Vincent-Philippe, Hébert, Josée, Krivtsov, Andrei V, Melnick, Ari, Paietta, Elisabeth M, Tallman, Martin S, Letai, Anthony, Sauvageau, Guy, Pouliot, Gayle, Levine, Ross, Marto, Jarrod A, Armstrong, Scott A, Kentsis, Alex (April 2018) MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia. Cancer Discovery, 8 (4). pp. 478-497. ISSN 2159-8274

Bružas, Emilis, Egeblad, Mikala (March 2018) Bone Talk: Activated Osteoblasts Promote Lung Cancer Growth. Trends in Molecular Medicine, 24 (3). pp. 237-239. ISSN 1471-4914

Brägelmann, Johannes, Lorenz, Carina, Borchmann, Sven, Nishii, Kazuya, Wegner, Julia, Meder, Lydia, Ostendorp, Jenny, Ast, David F, Heimsoeth, Alena, Nakasuka, Takamasa, Hirabae, Atsuko, Okawa, Sachi, Dammert, Marcel A, Plenker, Dennis, Klein, Sebastian, Lohneis, Philipp, Gu, Jianing, Godfrey, Laura K, Forster, Jan, Trajkovic-Arsic, Marija, Zillinger, Thomas, Haarmann, Mareike, Quaas, Alexander, Lennartz, Stefanie, Schmiel, Marcel, D'Rozario, Joshua, Thomas, Emily S, Li, Henry, Schmitt, Clemens A, George, Julie, Thomas, Roman K, von Karstedt, Silvia, Hartmann, Gunther, Büttner, Reinhard, Ullrich, Roland T, Siveke, Jens T, Ohashi, Kadoaki, Schlee, Martin, Sos, Martin L (September 2021) MAPK-pathway inhibition mediates inflammatory reprogramming and sensitizes tumors to targeted activation of innate immunity sensor RIG-I. Nature Communications, 12 (1). p. 5505. ISSN 2041-1723

Buchanan, JoAnn, da Costa, Nuno Maçarico, Cheadle, Lucas (August 2023) Emerging roles of oligodendrocyte precursor cells in neural circuit development and remodeling. Trends in Neurosciences, 46 (8). pp. 628-639. ISSN 0166-2236

Burkhart, R. A., Baker, L. A., Tiriac, H. (May 2018) Testing Susceptibility of Patient-Derived Organoid Cultures to Therapies: Pharmacotyping. Methods Mol Biol, 1787. pp. 253-261. ISSN 1064-3745

Burr, Ansen, Ji, Junyi, Ozler, Kadir, Mentrup, Heather, Eskiocak, Onur, Cumberland, Rachel, Menk, Ashley, Zhang, Xiaoyi, Overacre-Delgoffe, Abigail, Rittenhouse, Natalie, Marshall, Chris, Cooper, Vaughn, Poholek, Amanda, Delgoffe, Greg, Beyaz, Semir, Hand, Timothy (2023) Excess dietary sugar alters colonocyte metabolism and impairs the early proliferative response to damage. In: Crohns and Colitis Congress, JAN 19-21, 2023, Denver, CO.

Burr, Ansen HP, Ji, Junyi, Ozler, Kadir, Mentrup, Heather L, Eskiocak, Onur, Yueh, Brian, Cumberland, Rachel, Menk, Ashley V, Rittenhouse, Natalie, Marshall, Chris W, Chiaranunt, Pailin, Zhang, Xiaoyi, Mullinax, Lauren, Overacre-Delgoffe, Abigail, Cooper, Vaughn S, Poholek, Amanda C, Delgoffe, Greg M, Mollen, Kevin P, Beyaz, Semir, Hand, Timothy W (2023) Excess Dietary Sugar Alters Colonocyte Metabolism and Impairs the Proliferative Response to Damage. Cellular and Molecular Gastroenterology and Hepatology, 16 (2). pp. 287-316. ISSN 2352-345X

Byrne, M. E., Kidner, C. A., Martienssen, R. A. (October 2003) Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development, 13 (5). pp. 551-7. ISSN 0959-437X

C

Cable, Jennifer, Heard, Edith, Hirose, Tetsuro, Prasanth, Kannanganattu V, Chen, Ling-Ling, Henninger, Jonathan E, Quinodoz, Sofia A, Spector, David L, Diermeier, Sarah D, Porman, Allison M, Kumar, Dhiraj, Feinberg, Mark W, Shen, Xiaohua, Unfried, Juan Pablo, Johnson, Rory, Chen, Chun-Kan, Wilusz, Jeremy E, Lempradl, Adelheid, McGeary, Sean E, Wahba, Lamia, Pyle, Anna Marie, Hargrove, Amanda E, Simon, Matthew D, Marcia, Marco, Przanowska, Róża K, Chang, Howard Y, Jaffrey, Samie R, Contreras, Lydia M, Chen, Qi, Shi, Junchao, Mendell, Joshua T, He, Lin, Song, Erwei, Rinn, John L, Lalwani, Mukesh Kumar, Kalem, Murat Can, Chuong, Edward B, Maquat, Lynne E, Liu, Xuhang (November 2021) Noncoding RNAs: biology and applications-a Keystone Symposia report. Annals of the New York Academy of Sciences. ISSN 0077-8923

Cable, Jennifer, Pei, Duanqing, Reid, Lola M, Wang, Xin Wei, Bhatia, Sonam, Karras, Panagiotis, Melenhorst, Jan Joseph, Grompe, Markus, Lathia, Justin D, Song, Erwei, Kuo, Calvin J, Zhang, Ning, White, Richard M, Ma, Stephanie Ky, Ma, Lichun, Chin, Y Rebecca, Shen, Michael M, Ng, Irene Oi Lin, Kaestner, Klaus H, Zhou, Lei, Sikandar, Shaheen, Schmitt, Clemens A, Guo, Wei, Wong, Carmen Chak-Lui, Ji, Junfang, Tang, Dean G, Dubrovska, Anna, Yang, Chunzhang, Wiedemeyer, Wolf R, Weissman, Irving L (November 2021) Cancer stem cells: advances in biology and clinical translation-a Keystone Symposia report. Annals of the New York Academy of Sciences. ISSN 0077-8923

Cai, J., Donaldson, A., Yang, M., German, M. S., Enikolopov, G. N., Iacovitti, L. (January 2009) The Role of Lmx1a in the Differentiation of Human Embryonic Stem Cells into Midbrain Dopamine Neurons in Culture and After Transplantation into a Parkinson's Disease Model. Stem Cells, 27 (1). pp. 220-229.

Caiado, F., Maia-Silva, D., Jardim, C., Schmolka, N., Carvalho, T., Reforco, C., Faria, R., Kolundzija, B., Simoes, A. E., Baubec, T., Vakoc, C. R., da Silva, M. G., Manz, M. G., Schumacher, T. N., Norell, H., Silva-Santos, B. (November 2019) Lineage tracing of acute myeloid leukemia reveals the impact of hypomethylating agents on chemoresistance selection. Nat Commun, 10 (1). p. 4986. ISSN 2041-1723

Caligiuri, Giuseppina, Tuveson, David A (March 2023) Activated fibroblasts in cancer: Perspectives and challenges. Cancer Cell, 41 (3). pp. 434-449. ISSN 1535-6108

Campbell, R. A., Honegger, K. S., Qin, H., Li, W., Demir, E., Turner, G. C. (June 2013) Imaging a population code for odor identity in the Drosophila mushroom body. Journal of Neuroscience, 33 (25). pp. 10568-81. ISSN 0270-6474

Campbell, R. A. A., Turner, G. C. (January 2010) The mushroom body. Current Biology, 20 (1).

Campbell, P. J., Getz, G., Korbel, J. O., Stuart, J. M., Jennings, J. L., Stein, L. D., Perry, M. D., Nahal-Bose, H. K., Ouellette, B. F. F., Li, C. H., Rheinbay, E., Nielsen, G. P., Sgroi, D. C., Wu, C. L., Faquin, W. C., Deshpande, V., Boutros, P. C., Lazar, A. J., Hoadley, K. A., Louis, D. N., Dursi, L. J., Yung, C. K., Bailey, M. H., Saksena, G., Raine, K. M., Buchhalter, I., Kleinheinz, K., Schlesner, M., Zhang, J., Wang, W., Wheeler, D. A., Ding, L., Simpson, J. T., O’Connor, B. D., Yakneen, S., Ellrott, K., Miyoshi, N., Butler, A. P., Royo, R., Shorser, S. I., Vazquez, M., Rausch, T., Tiao, G., Waszak, S. M., Rodriguez-Martin, B., Shringarpure, S., Wu, D. Y., Demidov, G. M., Delaneau, O., Hayashi, S., Imoto, S., Habermann, N., Segre, A. V., Garrison, E., Cafferkey, A., Alvarez, E. G., Heredia-Genestar, J. M., Muyas, F., Drechsel, O., Bruzos, A. L., Temes, J., Zamora, J., Baez-Ortega, A., Kim, H. L., Mashl, R. J., Ye, K., DiBiase, A., Huang, K. L., Letunic, I., McLellan, M. D., Newhouse, S. J., Shmaya, T., Kumar, S., Wedge, D. C., Wright, M. H., Yellapantula, V. D., Gerstein, M., Khurana, E., Marques-Bonet, T., Navarro, A., Bustamante, C. D., Siebert, R., Nakagawa, H., Easton, D. F., Ossowski, S., Tubio, J. M. C., De La Vega, F. M., Estivill, X., Yuen, D., Mihaiescu, G. L., Omberg, L., Ferretti, V., Sabarinathan, R., Pich, O., Gonzalez-Perez, A., Taylor-Weiner, A., Fittall, M. W., Demeulemeester, J., Tarabichi, M., Roberts, N. D., Van Loo, P., Cortés-Ciriano, I., Urban, L., Park, P., Zhu, B., Pitkänen, E., Li, Y., Saini, N., Klimczak, L. J., Weischenfeldt, J., Sidiropoulos, N., Alexandrov, L. B., Rabionet, R., Escaramis, G., Bosio, M., Holik, A. Z., Susak, H., Prasad, A., Erkek, S., Calabrese, C., Raeder, B., Harrington, E., Mayes, S., Turner, D., Juul, S., Roberts, S. A., Song, L., Koster, R., Mirabello, L., Hua, X., Tanskanen, T. J., Tojo, M., Chen, J., Aaltonen, L. A., Rätsch, G., Schwarz, R. F., Butte, A. J., Brazma, A., Chanock, S. J., Chatterjee, N., Stegle, O., Harismendy, O., Bova, G. S., Gordenin, D. A., Haan, D., Sieverling, L., Feuerbach, L., Chalmers, D., Joly, Y., Knoppers, B., Molnár-Gábor, F., Phillips, M., Thorogood, A., Townend, D., Goldman, M., Fonseca, N. A., Xiang, Q., Craft, B., Piñeiro-Yáñez, E., Muñoz, A., Petryszak, R., Füllgrabe, A., Al-Shahrour, F., Keays, M., Haussler, D., Weinstein, J., Huber, W., Valencia, A., Papatheodorou, I., Zhu, J., Fan, Y., Torrents, D., Bieg, M., Chen, K., Chong, Z., Cibulskis, K., Eils, R., Fulton, R. S., Gelpi, J. L., Gonzalez, S., Gut, I. G., Hach, F., Heinold, M., Hu, T., Huang, V., Hutter, B., Jäger, N., Jung, J., Kumar, Y., Lalansingh, C., Leshchiner, I., Livitz, D., Ma, E. Z., Maruvka, Y. E., Milovanovic, A., Nielsen, M. M., Paramasivam, N., Pedersen, J. S., Puiggròs, M., Sahinalp, S. C., Sarrafi, I., Stewart, C., Stobbe, M. D., Wala, J. A., Wang, J., Wendl, M., Werner, J., Wu, Z., Xue, H., Yamaguchi, T. N., Yellapantula, V., Davis-Dusenbery, B. N., Grossman, R. L., Kim, Y., Heinold, M. C., Hinton, J., Jones, D. R., Menzies, A., Stebbings, L., Hess, J. M., Rosenberg, M., Dunford, A. J., Gupta, M., Imielinski, M., Meyerson, M., Beroukhim, R., Reimand, J., Dhingra, P., Favero, F., Dentro, S., Wintersinger, J., Rudneva, V., Park, J. W., Hong, E. P., Heo, S. G., Kahles, A., Lehmann, K. V., Soulette, C. M., Shiraishi, Y., Liu, F., He, Y., Demircioğlu, D., Davidson, N. R., Greger, L., Li, S., Liu, D., Stark, S. G., Zhang, F., Amin, S. B., Bailey, P., Chateigner, A., Frenkel-Morgenstern, M., Hou, Y., Huska, M. R., Kilpinen, H., Lamaze, F. C., Li, C., Li, X., Li, X., Liu, X., Marin, M. G., Markowski, J., Nandi, T., Ojesina, A. I., Pan-Hammarström, Q., Park, P. J., Pedamallu, C. S., Su, H., Tan, P., Teh, B. T., Wang, J., Xiong, H., Ye, C., Yung, C., Zhang, X., Zheng, L., Zhu, S., Awadalla, P., Creighton, C. J., Wu, K., Yang, H., Göke, J., Zhang, Z., Brooks, A. N., Fittall, M. W., Martincorena, I., Rubio-Perez, C., Juul, M., Schumacher, S., Shapira, O., Tamborero, D., Mularoni, L., Hornshøj, H., Deu-Pons, J., Muiños, F., Bertl, J., Guo, Q., Gonzalez-Perez, A., Xiang, Q., Bazant, W., Barrera, E., Al-Sedairy, S. T., Aretz, A., Bell, C., Betancourt, M., Buchholz, C., Calvo, F., Chomienne, C., Dunn, M., Edmonds, S., Green, E., Gupta, S., Hutter, C. M., Jegalian, K., Jones, N., Lu, Y., Nakagama, H., Nettekoven, G., Planko, L., Scott, D., Shibata, T., Shimizu, K., Stratton, M. R., Yugawa, T., Tortora, G., VijayRaghavan, K., Zenklusen, J. C., Townend, D., Knoppers, B. M., Aminou, B., Bartolome, J., Boroevich, K. A., Boyce, R., Buchanan, A., Byrne, N. J., Chen, Z., Cho, S., Choi, W., Clapham, P., Dow, M. T., Dursi, L. J., Eils, J., Farcas, C., Fayzullaev, N., Flicek, P., Heath, A. P., Hofmann, O., Hong, J. H., Hudson, T. J., Hübschmann, D., Ivkovic, S., Jeon, S. H., Jiao, W., Kabbe, R., Kahles, A., Kerssemakers, J. N. A., Kim, H., Kim, J., Koscher, M., Koures, A., Kovacevic, M., Lawerenz, C., Liu, J., Mijalkovic, S., Mijalkovic-Lazic, A. M., Miyano, S., Nastic, M., Nicholson, J., Ocana, D., Ohi, K., Ohno-Machado, L., Pihl, T. D., Prinz, M., Radovic, P., Short, C., Sofia, H. J., Spring, J., Struck, A. J., Tijanic, N., Vicente, D., Wang, Z., Williams, A., Woo, Y., Wright, A. J., Yang, L., Hamilton, M. P., Johnson, T. A., Kahraman, A., Kellis, M., Polak, P., Sallari, R., Sinnott-Armstrong, N., von Mering, C., Beltran, S., Gerhard, D. S., Gut, M., Trotta, J. R., Whalley, J. P., Niu, B., Espiritu, S. M. G., Gao, S., Huang, Y., Lalansingh, C. M., Teague, J. W., Wendl, M. C., Abascal, F., Bader, G. D., Bandopadhayay, P., Barenboim, J., Brunak, S., Carlevaro-Fita, J., Chakravarty, D., Chan, C. W. Y., Choi, J. K., Diamanti, K., Fink, J. L., Frigola, J., Gambacorti-Passerini, C., Garsed, D. W., Haradhvala, N. J., Harmanci, A. O., Helmy, M., Herrmann, C., Hobolth, A., Hodzic, E., Hong, C., Isaev, K., Izarzugaza, J. M. G., Johnson, R., Juul, R. I., Kim, J., Kim, J. K., Jan, Komorowski, Lanzós, A., Larsson, E., Lee, D., Li, S., Li, X., Lin, Z., Liu, E. M., Lochovsky, L., Lou, S., Madsen, T., Marchal, K., Martinez-Fundichely, A., McGillivray, P. D., Meyerson, W., Paczkowska, M., Park, K., Park, K., Pons, T., Pulido-Tamayo, S., Reyes-Salazar, I., Reyna, M. A., Rubin, M. A., Salichos, L., Sander, C., Schumacher, S. E., Shackleton, M., Shen, C., Shrestha, R., Shuai, S., Tsunoda, T., Umer, H. M., Uusküla-Reimand, L., Verbeke, L. P. C., Wadelius, C., Wadi, L., Warrell, J., Wu, G., Yu, J., Zhang, J., Zhang, X., Zhang, Y., Zhao, Z., Zou, L., Lawrence, M. S., Raphael, B. J., Bailey, P. J., Craft, D., Goldman, M. J., Aburatani, H., Binder, H., Dinh, H. Q., Heath, S. C., Hoffmann, S., Imbusch, C. D., Kretzmer, H., Laird, P. W., Martin-Subero, J. I., Nagae, G., Shen, H., Wang, Q., Weichenhan, D., Zhou, W., Berman, B. P., Brors, B., Plass, C., Akdemir, K. C., Bowtell, D. D. L., Burns, K. H., Busanovich, J., Chan, K., Dueso-Barroso, A., Edwards, P. A., Etemadmoghadam, D., Haber, J. E., Jones, D. T. W., Ju, Y. S., Kazanov, M. D., Koh, Y., Kumar, K., Lee, E. A., Lee, J. J. K., Lynch, A. G., Macintyre, G., Markowetz, F., Navarro, F. C. P., Pearson, J. V., Rippe, K., Scully, R., Villasante, I., Waddell, N., Yang, L., Yao, X., Yoon, S. S., Zhang, C. Z., Bergstrom, E. N., Boot, A., Covington, K., Fujimoto, A., Huang, M. N., Islam, S. M. A., McPherson, J. R., Morganella, S., Mustonen, V., Ng, A. W. T., Prokopec, S. D., Vázquez-García, I., Wu, Y., Yousif, F., Yu, W., Rozen, S. G., Rudneva, V. A., Shringarpure, S. S., Turner, D. J., Xia, T., Atwal, G., Chang, D. K., Cooke, S. L., Faltas, B. M., Haider, S., Kaiser, V. B., Karlić, R., Kato, M., Kübler, K., Margolin, A., Martin, S., Nik-Zainal, S., P’ng, C., Semple, C. A., Smith, J., Sun, R. X., Thai, K., Wright, D. W., Yuan, K., Biankin, A. V., Garraway, L., Grimmond, S. M., Adams, D. J., Anur, P., Cao, S., Christie, E. L., Cmero, M., Cun, Y., Dawson, K. J., Dentro, S. C., Deshwar, A. G., Donmez, N., Drews, R. M., Gerstung, M., Ha, G., Haase, K., Jerman, L., Ji, Y., Jolly, C., Lee, J., Lee-Six, H., Malikic, S., Mitchell, T. J., Morris, Q. D., Oesper, L., Peifer, M., Peto, M., Rosebrock, D., Rubanova, Y., Salcedo, A., Sengupta, S., Shi, R., Shin, S. J., Spiro, O., Vembu, S., Wintersinger, J. A., Yang, T. P., Yu, K., Zhu, H., Spellman, P. T., Weinstein, J. N., Chen, Y., Fujita, M., Han, L., Hasegawa, T., Komura, M., Li, J., Mizuno, S., Shimizu, E., Wang, Y., Xu, Y., Yamaguchi, R., Yang, F., Yang, Y., Yoon, C. J., Yuan, Y., Liang, H., Alawi, M., Borozan, I., Brewer, D. S., Cooper, C. S., Desai, N., Grundhoff, A., Iskar, M., Su, X., Zapatka, M., Lichter, P., Alsop, K., Bruxner, T. J. C., Christ, A. N., Cordner, S. M., Cowin, P. A., Drapkin, R., Fereday, S., George, J., Hamilton, A., Holmes, O., Hung, J. A., Kassahn, K. S., Kazakoff, S. H., Kennedy, C. J., Leonard, C. R., Mileshkin, L., Miller, D. K., Arnau, G. M., Mitchell, C., Newell, F., Nones, K., Patch, A. M., Quinn, M. C., Taylor, D. F., Thorne, H., Traficante, N., Vedururu, R., Waddell, N. M., Waring, P. M., Wood, S., Xu, Q., deFazio, A., Anderson, M. J., Antonello, D., Barbour, A. P., Bassi, C., Bersani, S., Cataldo, I., Chantrill, L. A., Chiew, Y. E., Chou, A., Cingarlini, S., Cloonan, N., Corbo, V., Davi, M. V., Duthie, F. R., Gill, A. J., Graham, J. S., Harliwong, I., Jamieson, N. B., Johns, A. L., Kench, J. G., Landoni, L., Lawlor, R. T., Mafficini, A., Merrett, N. D., Miotto, M., Musgrove, E. A., Nagrial, A. M., Oien, K. A., Pajic, M., Pinese, M., Robertson, A. J., Rooman, I., Rusev, B. C., Samra, J. S., Scardoni, M., Scarlett, C. J., Scarpa, A., Sereni, E., Sikora, K. O., Simbolo, M., Taschuk, M. L., Toon, C. W., Vicentini, C., Wu, J., Zeps, N., Behren, A., Burke, H., Cebon, J., Dagg, R. A., De Paoli-Iseppi, R., Dutton-Regester, K., Field, M. A., Fitzgerald, A., Hersey, P., Jakrot, V., Johansson, P. A., Kakavand, H., Kefford, R. F., Lau, L. M. S., Long, G. V., Pickett, H. A., Pritchard, A. L., Pupo, G. M., Saw, R. P. M., Schramm, S. J., Shang, C. A., Shang, P., Spillane, A. J., Stretch, J. R., Tembe, V., Thompson, J. F., Vilain, R. E., Wilmott, J. S., Yang, J. Y., Hayward, N. K., Mann, G. J., Scolyer, R. A., Bartlett, J., Bavi, P., Chadwick, D. E., Chan-Seng-Yue, M., Cleary, S., Connor, A. A., Czajka, K., Denroche, R. E., Dhani, N. C., Eagles, J., Gallinger, S., Grant, R. C., Hedley, D., Hollingsworth, M. A., Jang, G. H., Johns, J., Kalimuthu, S., Liang, S. B., Lungu, I., Luo, X., Mbabaali, F., McPherson, T. A., Miller, J. K., Moore, M. J., Notta, F., Pasternack, D., Petersen, G. M., Roehrl, M. H. A., Sam, M., Selander, I., Serra, S., Shahabi, S., Thayer, S. P., Timms, L. E., Wilson, G. W., Wilson, J. M., Wouters, B. G., McPherson, J. D., Beck, T. A., Bhandari, V., Collins, C. C., Fleshner, N. E., Fox, N. S., Fraser, M., Heisler, L. E., Lalonde, E., Livingstone, J., Meng, A., Sabelnykova, V. Y., Shiah, Y. J., Van der Kwast, T., Bristow, R. G., Ding, S., Fan, D., Li, L., Nie, Y., Xiao, X., Xing, R., Yang, S., Yu, Y., Zhou, Y., Banks, R. E., Bourque, G., Brennan, P., Letourneau, L., Riazalhosseini, Y., Scelo, G., Vasudev, N., Viksna, J., Lathrop, M., Tost, J., Ahn, S. M., Aparicio, S., Arnould, L., Aure, M. R., Bhosle, S. G., Birney, E., Borg, A., Boyault, S., Brinkman, A. B., Brock, J. E., Broeks, A., Børresen-Dale, A. L., Caldas, C., Chin, S. F., Davies, H., Desmedt, C., Dirix, L., Dronov, S., Ehinger, A., Eyfjord, J. E., Fatima, A., Foekens, J. A., Futreal, P. A., Garred, Ø, Giri, D. D., Glodzik, D., Grabau, D., Hilmarsdottir, H., Hooijer, G. K., Jacquemier, J., Jang, S. J., Jonasson, J. G., Jonkers, J., Kim, H. Y., King, T. A., Knappskog, S., Kong, G., Krishnamurthy, S., Lakhani, S. R., Langerød, A., Larsimont, D., Lee, H. J., Lee, J. Y., Lee, M. T. M., Lingjærde, O. C., MacGrogan, G., Martens, J. W. M., O’Meara, S., Pauporté, I., Pinder, S., Pivot, X., Provenzano, E., Purdie, C. A., Ramakrishna, M., Ramakrishnan, K., Reis-Filho, J., Richardson, A. L., Ringnér, M., Rodriguez, J. B., Rodríguez-González, F. G., Romieu, G., Salgado, R., Sauer, T., Shepherd, R., Sieuwerts, A. M., Simpson, P. T., Smid, M., Sotiriou, C., Span, P. N., Stefánsson, Ó A., Stenhouse, A., Stunnenberg, H. G., Sweep, F., Tan, B. K. T., Thomas, G., Thompson, A. M., Tommasi, S., Treilleux, I., Tutt, A., Ueno, N. T., Van Laere, S., Van den Eynden, G. G., Vermeulen, P., Viari, A., Vincent-Salomon, A., Wong, B. H., Yates, L., Zou, X., van Deurzen, C. H. M., van de Vijver, M. J., van’t Veer, L., Ammerpohl, O., Aukema, S., Bergmann, A. K., Bernhart, S. H., Borkhardt, A., Borst, C., Burkhardt, B., Claviez, A., Goebler, M. E., Haake, A., Haas, S., Hansmann, M., Hoell, J. I., Hummel, M., Karsch, D., Klapper, W., Kneba, M., Kreuz, M., Kube, D., Küppers, R., Lenze, D., Loeffler, M., López, C., Mantovani-Löffler, L., Möller, P., Ott, G., Radlwimmer, B., Richter, J., Rohde, M., Rosenstiel, P. C., Rosenwald, A., Schilhabel, M. B., Schreiber, S., Stadler, P. F., Staib, P., Stilgenbauer, S., Sungalee, S., Szczepanowski, M., Toprak, U. H., Trümper, L. H. P., Wagener, R., Zenz, T., Hovestadt, V., von Kalle, C., Kool, M., Korshunov, A., Landgraf, P., Lehrach, H., Northcott, P. A., Pfister, S. M., Reifenberger, G., Warnatz, H. J., Wolf, S., Yaspo, M. L., Assenov, Y., Gerhauser, C., Minner, S., Schlomm, T., Simon, R., Sauter, G., Sültmann, H., Biswas, N. K., Maitra, A., Majumder, P. P., Sarin, R., Barbi, S., Bonizzato, G., Cantù, C., Dei Tos, A. P., Fassan, M., Grimaldi, S., Luchini, C., Malleo, G., Marchegiani, G., Milella, M., Paiella, S., Pea, A., Pederzoli, P., Ruzzenente, A., Salvia, R., Sperandio, N., Arai, Y., Hama, N., Hiraoka, N., Hosoda, F., Nakamura, H., Ojima, H., Okusaka, T., Totoki, Y., Urushidate, T., Fukayama, M., Ishikawa, S., Katai, H., Katoh, H., Komura, D., Rokutan, H., Saito-Adachi, M., Suzuki, A., Taniguchi, H., Tatsuno, K., Ushiku, T., Yachida, S., Yamamoto, S., Aikata, H., Arihiro, K., Ariizumi, S. I., Chayama, K., Furuta, M., Gotoh, K., Hayami, S., Hirano, S., Kawakami, Y., Maejima, K., Nakamura, T., Nakano, K., Ohdan, H., Sasaki-Oku, A., Tanaka, H., Ueno, M., Yamamoto, M., Yamaue, H., Choo, S. P., Cutcutache, I., Khuntikeo, N., Ong, C. K., Pairojkul, C., Popescu, I., Ahn, K. S., Aymerich, M., Lopez-Guillermo, A., López-Otín, C., Puente, X. S., Campo, E., Amary, F., Baumhoer, D., Behjati, S., Bjerkehagen, B., Futreal, P. A., Myklebost, O., Pillay, N., Tarpey, P., Tirabosco, R., Zaikova, O., Flanagan, A. M., Boultwood, J., Bowen, D. T., Cazzola, M., Green, A. R., Hellstrom-Lindberg, E., Malcovati, L., Nangalia, J., Papaemmanuil, E., Vyas, P., Ang, Y., Barr, H., Beardsmore, D., Eldridge, M., Gossage, J., Grehan, N., Hanna, G. B., Hayes, S. J., Hupp, T. R., Khoo, D., Lagergren, J., Lovat, L. B., MacRae, S., O’Donovan, M., O’Neill, J. R., Parsons, S. L., Preston, S. R., Puig, S., Roques, T., Sanders, G., Sothi, S., Tavaré, S., Tucker, O., Turkington, R., Underwood, T. J., Welch, I., Fitzgerald, R. C., Berney, D. M., De Bono, J. S., Cahill, D., Camacho, N., Dennis, N. M., Dudderidge, T., Edwards, S. E., Fisher, C., Foster, C. S., Ghori, M., Gill, P., Gnanapragasam, V. J., Gundem, G., Hamdy, F. C., Hawkins, S., Hazell, S., Howat, W., Isaacs, W. B., Karaszi, K., Kay, J. D., Khoo, V., Kote-Jarai, Z., Kremeyer, B., Kumar, P., Lambert, A., Leongamornlert, D. A., Livni, N., Lu, Y. J., Luxton, H. J., Marsden, L., Massie, C. E., Matthews, L., Mayer, E., McDermott, U., Merson, S., Neal, D. E., Ng, A., Nicol, D., Ogden, C., Rowe, E. W., Shah, N. C., Thomas, S., Thompson, A., Verrill, C., Visakorpi, T., Warren, A. Y., Whitaker, H. C., Zhang, H., van As, N., Eeles, R. A., Abeshouse, A., Agrawal, N., Akbani, R., Al-Ahmadie, H., Albert, M., Aldape, K., Ally, A., Appelbaum, E. L., Armenia, J., Asa, S., Auman, J. T., Balasundaram, M., Balu, S., Barnholtz-Sloan, J., Bathe, O. F., Baylin, S. B., Benz, C., Berchuck, A., Berrios, M., Bigner, D., Birrer, M., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bosenberg, M., Bowlby, R., Boyd, J., Broaddus, R. R., Brock, M., Brooks, D., Bullman, S., Caesar-Johnson, S. J., Carey, T. E., Carlsen, R., Cerfolio, R., Chandan, V. S., Chen, H. W., Cherniack, A. D., Chien, J., Cho, J., Chuah, E., Cibulskis, C., Cope, L., Cordes, M. G., Curley, E., Czerniak, B., Danilova, L., Davis, I. J., Defreitas, T., Demchok, J. A., Dhalla, N., Dhir, R., Doddapaneni, H. V., El-Naggar, A., Felau, I., Ferguson, M. L., Finocchiaro, G., Fong, K. M., Frazer, S., Friedman, W., Fronick, C. C., Fulton, L. A., Gabriel, S. B., Gao, J., Gehlenborg, N., Gershenwald, J. E., Ghossein, R., Giama, N. H., Gibbs, R. A., Gomez, C., Govindan, R., Hayes, D. N., Hegde, A. M., Heiman, D. I., Heins, Z., Hepperla, A. J., Holbrook, A., Holt, R. A., Hoyle, A. P., Hruban, R. H., Hu, J., Huang, M., Huntsman, D., Huse, J., Iacobuzio-Donahue, C. A., Ittmann, M., Jayaseelan, J. C., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Juhl, H., Kang, K. J., Karlan, B., Kasaian, K., Kebebew, E., Kim, H. K., Korchina, V., Kundra, R., Lai, P. H., Lander, E., Le, X., Lee, D., Levine, D. A., Lewis, L., Ley, T., Li, H. I., Lin, P., Linehan, W. M., Liu, F. F., Lu, Y., Lype, L., Ma, Y., Maglinte, D. T., Mardis, E. R., Marks, J., Marra, M. A., Matthew, T. J., Mayo, M., McCune, K., Meier, S. R., Meng, S., Mieczkowski, P. A., Mikkelsen, T., Miller, C. A., Mills, G. B., Moore, R. A., Morrison, C., Mose, L. E., Moser, C. D., Mungall, A. J., Mungall, K., Mutch, D., Muzny, D. M., Myers, J., Newton, Y., Noble, M. S., O’Donnell, P., O’Neill, B. P., Ochoa, A., Park, J. W., Parker, J. S., Pass, H., Pastore, A., Pennell, N. A., Perou, C. M., Petrelli, N., Potapova, O., Rader, J. S., Ramalingam, S., Rathmell, W. K., Reuter, V., Reynolds, S. M., Ringel, M., Roach, J., Roberts, L. R., Robertson, A. G., Sadeghi, S., Saller, C., Sanchez-Vega, F., Schadendorf, D., Schein, J. E., Schmidt, H. K., Schultz, N., Seethala, R., Senbabaoglu, Y., Shelton, T., Shi, Y., Shih, J., Shmulevich, I., Shriver, C., Signoretti, S., Simons, J. V., Singer, S., Sipahimalani, P., Skelly, T. J., Smith-McCune, K., Socci, N. D., Soloway, M. G., Sood, A. K., Tam, A., Tan, D., Tarnuzzer, R., Thiessen, N., Thompson, R. H., Thorne, L. B., Tsao, M., Umbricht, C., Van Den Berg, D. J., Van Meir, E. G., Veluvolu, U., Voet, D., Wang, L., Weinberger, P., Weisenberger, D. J., Wigle, D., Wilkerson, M. D., Wilson, R. K., Winterhoff, B., Wiznerowicz, M., Wong, T., Wong, W., Xi, L., Yau, C., Zhang, H., Zhang, H., Zhang, J., The, Icgc Tcga Pan-Cancer Analysis of Whole Genomes Consortium (2020) Pan-cancer analysis of whole genomes. Nature, 578 (7793). pp. 82-93. ISSN 0028-0836 (Public Dataset)

Cao, Zhendong, Budinich, Krista A, Huang, Hua, Ren, Diqiu, Lu, Bin, Zhang, Zhen, Chen, Qingzhou, Zhou, Yeqiao, Huang, Yu-Han, Alikarami‬, Fatemeh, Kingsley, Molly C, Lenard, Alexandra K, Wakabayashi, Aoi, Khandros, Eugene, Bailis, Will, Qi, Jun, Carroll, Martin P, Blobel, Gerd A, Faryabi, Robert B, Bernt, Kathrin M, Berger, Shelley L, Shi, Junwei (August 2021) ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency. Molecular Cell. ISSN 1097-2765

Carbonetti, G., Converso, C., Clement, T., Wang, C., Trotman, L., Ojima, I., Kaczocha, M. (October 2019) Docetaxel/cabazitaxel and fatty acid binding protein 5 inhibitors produce synergistic inhibition of prostate cancer growth. Prostate. ISSN 0270-4137

Carter, J. A., Preall, J. B., Atwal, G. S. (October 2019) Bayesian Inference of Allelic Inclusion Rates in the Human T Cell Receptor Repertoire. Cell Syst, 9 (5). pp. 475-482. ISSN 2405-4712 (Public Dataset)

Carter, J. A., Preall, J. B., Grigaityte, K., Goldfless, S. J., Jeffery, E., Briggs, A. W., Vigneault, F., Atwal, G. S. (July 2019) Single T Cell Sequencing Demonstrates the Functional Role alpha beta TCR Pairing in Cell Lineage and Antigen Specificity. Frontiers in Immunology, 10. Article Number:1516. ISSN 1664-3224

Carter, Jason A, Strömich, Léonie, Peacey, Matthew, Chapin, Sarah R, Velten, Lars, Steinmetz, Lars M, Brors, Benedikt, Pinto, Sheena, Meyer, Hannah V (August 2022) Transcriptomic diversity in human medullary thymic epithelial cells. Nature Communications, 13 (1). p. 4296. ISSN 2041-1723

Chae, H., Kepple, D. R., Bast, W. G., Murthy, V. N., Koulakov, A. A., Albeanu, D. F. (August 2019) Mosaic representations of odors in the input and output layers of the mouse olfactory bulb. Nat Neurosci, 22 (8). 1306-1317.. ISSN 1097-6256 (Public Dataset)

Chan, K., Robert, F., Oertlin, C., Kapeller-Libermann, D., Avizonis, D., Gutierrez, J., Handly-Santana, A., Doubrovin, M., Park, J., Schoepfer, C., Da Silva, B., Yao, M., Gorton, F., Shi, J., Thomas, C. J., Brown, L. E., Porco, J. A., Pollak, M., Larsson, O., Pelletier, J., Chio, I. I. C. (November 2019) eIF4A supports an oncogenic translation program in pancreatic ductal adenocarcinoma. Nat Commun, 10 (1). p. 5151. ISSN 2041-1723

Chandrasekhar, A., Navlakha, S. (May 2019) Neural arbors are Pareto optimal. Proc Biol Sci, 286 (1902). p. 20182727. ISSN 0962-8452 (Public Dataset)

Chang, Mario C, Staklinski, Stephen J, Merritt, Matthew E, Kilberg, Michael S (2023) A method for measurement of human asparagine synthetase (ASNS) activity and application to ASNS protein variants associated with ASNS deficiency. Biology Methods and Protocols, 8 (1). bpad026. ISSN 2396-8923

Chang, K. C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., Alsudani, H., Kostroff, K., Bhuiya, T., Brogi, E., Pappin, D. J., Bennett, C. F., Rigo, F., Spector, D. L. (December 2020) MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. Nat Commun, 11 (1). p. 6438. ISSN 2041-1723

Chatterjee, Deeptiman, Costa, Caique Almeida Machado, Wang, Xian-Feng, Jevitt, Allison, Huang, Yi-Chun, Deng, Wu-Min (November 2022) Single-cell transcriptomics identifies Keap1-Nrf2 regulated collective invasion in a Drosophila tumor model. eLife, 11. e80956. ISSN 2050-084X

Cheadle, L., Tzeng, C. P., Kalish, B. T., Harmin, D. A., Rivera, S., Ling, E., Nagy, M. A., Hrvatin, S., Hu, L., Stroud, H., Burkly, L. C., Chen, C., Greenberg, M. E. (August 2018) Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement. Neuron, 99 (3). 525-539.e10. ISSN 0896-6273 (Print)0896-6273

Cheadle, Lucas (May 2023) Neuron-glia communication through bona fide synapses. Nature Reviews Neuroscience. ISSN 1471-003X

Cheadle, Lucas, Rivera, Samuel A, Phelps, Jasper S, Ennis, Katelin A, Stevens, Beth, Burkly, Linda C, Lee, Wei-Chung Allen, Greenberg, Michael E (November 2020) Sensory Experience Engages Microglia to Shape Neural Connectivity through a Non-Phagocytic Mechanism. Neuron, 108 (3). 451-468.e9. ISSN 0896-6273

Chen, B., Trachtenberg, J.T., Holtmaat, A. J., Svoboda, K. (2005) Long-term, high-resolution imaging in the neocortex in vivo. In: Live cell imaging: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 423-424. ISBN 0879696826

Chen, X., Sun, Y. C., Church, G. M., Lee, J. H., Zador, A. M. (February 2018) Efficient in situ barcode sequencing using padlock probe-based BaristaSeq. Nucleic Acids Res, 46 (4). e22. ISSN 0305-1048

Chen, X., Sun, Y. C., Zhan, H., Kebschull, J. M., Fischer, S., Matho, K., Huang, Z. J., Gillis, J., Zador, A. M. (October 2019) High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing. Cell, 179 (3). 772-786.e19. ISSN 0092-8674 (Public Dataset)

Chen, Y., McElvain, L. E., Tolpygo, A. S., Ferrante, D., Friedman, B., Mitra, P. P., Karten, H. J., Freund, Y., Kleinfeld, D. (March 2019) An active texture-based digital atlas enables automated mapping of structures and markers across brains. Nat Methods, 16 (4). pp. 341-350. ISSN 1548-7091

Chen, Hsuan-An, Ho, Yu-Jui, Mezzadra, Riccardo, Adrover, Jose M, Smolkin, Ryan, Zhu, Changyu, Woess, Katharina, Bernstein, Nicholas, Schmitt, Georgia, Fong, Linda, Luan, Wei, Wuest, Alexandra, Tian, Sha, Li, Xiang, Broderick, Caroline, Hendrickson, Ronald C, Egeblad, Mikala, Chen, Zhenghao, Alonso-Curbelo, Direna, Lowe, Scott W (October 2022) Senescence rewires microenvironment sensing to facilitate anti-tumor immunity. Cancer Discovery. CD-22. ISSN 2159-8274

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (October 2022) High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Cell, 185 (22). 4117-4134.e28. ISSN 0092-8674

Cheng, Derek K, Oni, Tobiloba E, Thalappillil, Jennifer S, Park, Youngkyu, Ting, Hsiu-Chi, Alagesan, Brinda, Prasad, Nadia V, Addison, Kenneth, Rivera, Keith D, Pappin, Darryl J, Van Aelst, Linda, Tuveson, David A (May 2021) Oncogenic KRAS engages an RSK1/NF1 pathway to inhibit wild-type RAS signaling in pancreatic cancer. Proceedings of the National Academy of Sciences of USA, 118 (21). e2016904118-e2016904118. ISSN 0027-8424

Cheung, E. C., DeNicola, G. M., Nixon, C., Blyth, K., Labuschagne, C. F., Tuveson, D. A., Vousden, K. H. (January 2020) Dynamic ROS Control by TIGAR Regulates the Initiation and Progression of Pancreatic Cancer. Cancer Cell. ISSN 1535-6108

Chevy, Q., Kepecs, A. (February 2018) When Acetylcholine Unlocks Feedback Inhibition in Cortex. Neuron, 97 (3). pp. 481-484. ISSN 0896-6273

Chibaya, Loretah, Murphy, Katherine C, DeMarco, Kelly D, Gopalan, Sneha, Liu, Haibo, Parikh, Chaitanya N, Lopez-Diaz, Yvette, Faulkner, Melissa, Li, Junhui, Morris, John P, Ho, Yu-Jui, Chana, Sachliv K, Simon, Janelle, Luan, Wei, Kulick, Amanda, de Stanchina, Elisa, Simin, Karl, Zhu, Lihua Julie, Fazzio, Thomas G, Lowe, Scott W, Ruscetti, Marcus (June 2023) EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance. Nature Cancer, 4 (6). pp. 872-892. ISSN 2662-1347

Chin, C. S., Wagner, J., Zeng, Q., Garrison, E., Garg, S., Fungtammasan, A., Rautiainen, M., Aganezov, S., Kirsche, M., Zarate, S., Schatz, M. C., Xiao, C., Rowell, W. J., Markello, C., Farek, J., Sedlazeck, F. J., Bansal, V., Yoo, B., Miller, N., Zhou, X., Carroll, A., Barrio, A. M., Salit, M., Marschall, T., Dilthey, A. T., Zook, J. M. (September 2020) A diploid assembly-based benchmark for variants in the major histocompatibility complex. Nat Commun, 11 (1). p. 4794. ISSN 2041-1723

Choi, K., Zhao, X., Tock, A. J., Lambing, C., Underwood, C. J., Hardcastle, T. J., Serra, H., Kim, J., Cho, H. S., Kim, J., Ziolkowski, P. A., Yelina, N. E., Hwang, I., Martienssen, R. A., Henderson, I. R. (April 2018) Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions. Genome Res, 28 (4). pp. 532-546. ISSN 1088-9051

Choi, Charlotte P, Tay, Rebecca J, Starostik, Margaret R, Feng, Suhua, Moresco, James J, Montgomery, Brooke E, Xu, Emily, Hammonds, Maya A, Schatz, Michael C, Montgomery, Taiowa A, Yates, John R, Jacobsen, Steven E, Kim, John K (February 2021) SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. eLife, 10. pp. 1-35. ISSN 2050-084X

Chou, Hsiang-Chen, Bhalla, Kuhulika, Demerdesh, Osama El, Klingbeil, Olaf, Hanington, Kaarina, Aganezov, Sergey, Andrews, Peter, Alsudani, Habeeb, Chang, Kenneth, Vakoc, Christopher R, Schatz, Michael C, McCombie, W Richard, Stillman, Bruce (February 2021) The human Origin Recognition Complex is essential for pre-RC assembly, mitosis and maintenance of nuclear structure. eLife, 10. ISSN 2050-084X

Chu, Timothy H, Khairallah, Camille, Shieh, Jason, Cho, Rhea, Qiu, Zhijuan, Zhang, Yue, Eskiocak, Onur, Thanassi, David G, Kaplan, Mark H, Beyaz, Semir, Yang, Vincent W, Bliska, James B, Sheridan, Brian S (December 2021) γδ T cell IFNγ production is directly subverted by Yersinia pseudotuberculosis outer protein YopJ in mice and humans. PLoS Pathogens, 17 (12). e1010103. ISSN 1553-7374

Ciccone, M. F., Trousdell, M. C., Dos Santos, C. O. (November 2020) Characterization of Organoid Cultures to Study the Effects of Pregnancy Hormones on the Epigenome and Transcriptional Output of Mammary Epithelial Cells. J Mammary Gland Biol Neoplasia, 25 (4). pp. 351-366. ISSN 1083-3021

Cifani, Paolo, Kentsis, Alex (October 2022) Quantitative Cell Proteomic Atlas: Pathway-Scale Targeted Mass Spectrometry for High-Resolution Functional Profiling of Cell Signaling. Journal of Proteome Research, 21 (10). pp. 2535-2544. ISSN 1535-3893

Ciren, Danielle, Zebell, Sophia, Lippman, Zachary B (March 2024) Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator. PLoS Genetics, 20 (3). e1011174. ISSN 1553-7390

Cisse, Y. M., Borniger, J. C., Lemanski, E., Walker, W. H., Nelson, R. J. (January 2018) Time-Restricted Feeding Alters the Innate Immune Response to Bacterial Endotoxin. J Immunol, 200 (2). pp. 681-687. ISSN 1550-6606 (Electronic)0022-1767 (Linking)

Claeys, H., Vi, S. L., Xu, X., Satoh-Nagasawa, N., Eveland, A. L., Goldshmidt, A., Feil, R., Beggs, G. A., Sakai, H., Brennan, R. G., Lunn, J. E., Jackson, D. (April 2019) Control of meristem determinacy by trehalose 6-phosphate phosphatases is uncoupled from enzymatic activity. Nat Plants, 5 (4). pp. 352-357. ISSN 2055-0278

Cline, H. (December 2003) Sperry and Hebb: oil and vinegar? Trends in Neurosciences, 26 (12). pp. 655-661. ISSN 0166-2236

Concepcion, Carla P, Ma, Sai, LaFave, Lindsay M, Bhutkar, Arjun, Liu, Manyuan, DeAngelo, Lydia P, Kim, Jonathan Y, Del Priore, Isabella, Schoenfeld, Adam J, Miller, Manon, Kartha, Vinay K, Westcott, Peter MK, Sánchez-Rivera, Francisco J, Meli, Kevin, Gupta, Manav, Bronson, Roderick T, Riely, Gregory J, Rekhtman, Natasha, Rudin, Charles M, Kim, Carla F, Regev, Aviv, Buenrostro, Jason D, Jacks, Tyler (February 2022) Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung. Cancer Discovery, 12 (2). pp. 562-585. ISSN 0008-5472

Connell, C. M., Raby, S. E. M., Beh, I., Flint, T. R., Williams, E. H., Fearon, D. T., Jodrell, D. I., Janowitz, T. (January 2018) Cancer Immunotherapy Trials Underutilize Immune Response Monitoring. Oncologist, 23 (1). pp. 116-117. ISSN 1083-7159

Cook, N., Basu, B., Smith, D. M., Gopinathan, A., Evans, J., Steward, W. P., Palmer, D., Propper, D., Venugopal, B., Hategan, M., Anthoney, D. A., Hampson, L. V., Nebozhyn, M., Tuveson, D., Farmer-Hall, H., Turner, H., McLeod, R., Halford, S., Jodrell, D. (March 2018) A phase I trial of the gamma-secretase inhibitor MK-0752 in combination with gemcitabine in patients with pancreatic ductal adenocarcinoma. Br J Cancer, 118 (6). pp. 793-801. ISSN 0007-0920

Copin, Richard, Baum, Alina, Wloga, Elzbieta, Pascal, Kristen E, Giordano, Stephanie, Fulton, Benjamin O, Zhou, Anbo, Negron, Nicole, Lanza, Kathryn, Chan, Newton, Coppola, Angel, Chiu, Joyce, Ni, Min, Wei, Yi, Atwal, Gurinder S, Hernandez, Annabel Romero, Saotome, Kei, Zhou, Yi, Franklin, Matthew C, Hooper, Andrea T, McCarthy, Shane, Hamon, Sara, Hamilton, Jennifer D, Staples, Hilary M, Alfson, Kendra, Carrion, Ricardo, Ali, Shazia, Norton, Thomas, Somersan-Karakaya, Selin, Sivapalasingam, Sumathi, Herman, Gary A, Weinreich, David M, Lipsich, Leah, Stahl, Neil, Murphy, Andrew J, Yancopoulos, George D, Kyratsous, Christos A (June 2021) The monoclonal antibody combination REGEN-COV protects against SARS-CoV-2 mutational escape in preclinical and human studies. Cell. ISSN 0092-8674

Cotero, Victoria, Graf, John, Miwa, Hiromi, Hirschstein, Zall, Qanud, Khaled, Huerta, Tomás S, Tai, Ningwen, Ding, Yuyan, Jimenez-Cowell, Kevin, Tomaio, Jacquelyn N, Song, Weiguo, Devarajan, Alex, Tsaava, Tea, Madhavan, Radhika, Wallace, Kirk, Loghin, Evelina, Morton, Christine, Fan, Ying, Kao, Tzu-Jen, Akhtar, Kainat, Damaraju, Meghana, Barenboim, Linda, Maietta, Teresa, Ashe, Jeffrey, Tracey, Kevin J, Coleman, Thomas R, Di Carlo, Dino, Shin, Damian, Zanos, Stavros, Chavan, Sangeeta S, Herzog, Raimund I, Puleo, Chris (March 2022) Stimulation of the hepatoportal nerve plexus with focused ultrasound restores glucose homoeostasis in diabetic mice, rats and swine. Nature Biomedical Engineering. ISSN 2157-846X

Couto, Joao, Musall, Simon, Sun, Xiaonan R, Khanal, Anup, Gluf, Steven, Saxena, Shreya, Kinsella, Ian, Abe, Taiga, Cunningham, John P, Paninski, Liam, Churchland, Anne K (June 2021) Chronic, cortex-wide imaging of specific cell populations during behavior. Nature Protocols. ISSN 1754-2189

Cowley, Benjamin R, Stan, Patricia L, Pillow, Jonathan W, Smith, Matthew A (November 2023) Compact deep neural network models of visual cortex. bioRxiv. (Submitted)

Croft, A. P., Campos, J., Jansen, K., Turner, J. D., Marshall, J., Attar, M., Savary, L., Wehmeyer, C., Naylor, A. J., Kemble, S., Begum, J., Durholz, K., Perlman, H., Barone, F., McGettrick, H. M., Fearon, D. T., Wei, K., Raychaudhuri, S., Korsunsky, I., Brenner, M. B., Coles, M., Sansom, S. N., Filer, A., Buckley, C. D. (May 2019) Distinct fibroblast subsets drive inflammation and damage in arthritis. Nature, 570 (7760). pp. 246-251. ISSN 0028-0836

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., Gillis, J. (February 2018) Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor. Nat Commun, 9 (1). p. 884. ISSN 2041-1723

Czeisler, C. M., Silva, T. M., Fair, S. R., Liu, J., Tupal, S., Kaya, B., Cowgill, A., Mahajan, S., Silva, P. E., Wang, Y., Blissett, A. R., Goksel, M., Borniger, J. C., Zhang, N., Fernandes-Junior, S. A., Catacutan, F., Alves, M. J., Nelson, R. J., Sundaresean, V., Rekling, J., Takakura, A. C., Moreira, T. S., Otero, J. J. (April 2019) The role of PHOX2B-derived astrocytes in chemosensory control of breathing and sleep homeostasis. J Physiol, 597 (8). pp. 2225-2251. ISSN 1469-7793

D

Dachet, Fabien, Brown, James B, Valyi-Nagy, Tibor, Narayan, Kunwar D, Serafini, Anna, Boley, Nathan, Gingeras, Thomas R, Celniker, Susan E, Mohapatra, Gayatry, Loeb, Jeffrey A (March 2021) Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports, 11 (1). p. 6078. ISSN 2045-2322

Dancsok, A. R., Setsu, N., Gao, D., Blay, J. Y., Thomas, D., Maki, R. G., Nielsen, T. O., Demicco, E. G. (July 2019) Expression of lymphocyte immunoregulatory biomarkers in bone and soft-tissue sarcomas. Mod Pathol, 32 (12). pp. 1662-1785. ISSN 0893-3952

Dancsok, A. R., Gao, D., Lee, A.F., Steigen, S.E., Blay, J.Y., Thomas, D.M., Maki, R.G., Nielsen, T. O., Demicco, E. G. (April 2020) Tumor-associated Macrophages and Macrophage-Related Immune Checkpoint Expression in Sarcomas. Oncoimmunology, 9 (1). p. 1747340. ISSN 2162402X,

Danko, C. G., Choate, L. A., Marks, B. A., Rice, E. J., Wang, Z., Chu, T., Martins, A. L., Dukler, N., Coonrod, S. A., Tait Wojno, E. D., Lis, J. T., Kraus, W. L., Siepel, A. (January 2018) Dynamic evolution of regulatory element ensembles in primate CD4(+) T cells. Nat Ecol Evol. pp. 1-12. ISSN 2397-334x

Dasgupta, A., Shukla, S.K., Vernucci, E., King, R.J., Abrego, J., Mulder, S.E., Mullen, N.J., Graves, G., Buettner, K., Thakur, R., Murthy, D., Attri, K.S., Wang, D., Chaika, N.V., Pacheco, C.G., Rai, I., Engle, D. D., Grandgenett, P. M., Punsoni, M., Reames, B.N., Teoh-Fitzgerald, M., Oberley-Deegan, R., Yu, F., Klute, K.A., Hollingsworth, M.A., Zimmerman, M.C., Mehla, K., Sadoshima, J., Tuveson, D. A., Singh, P.K. (July 2020) SIRT1-NOX4 Signaling Axis Regulates Cancer Cachexia. J Exp Med, 217 (7). e20190745. ISSN 0022-1007

Dasgupta, Sanjoy, Hattori, Daisuke, Navlakha, Saket (October 2022) A neural theory for counting memories. Nature Communications, 13 (1). p. 5961. ISSN 2041-1723

Dassler-Plenker, J., Kuttner, V., Egeblad, M. (January 2020) Communication in tiny packages: Exosomes as means of tumor-stroma communication. Biochim Biophys Acta Rev Cancer, 1873 (2). p. 188340. ISSN 0304-419x

Davenport, Charles Benedict (November 1937) Interpretation of certain infantile growth curves. Growth, 1 (4). pp. 279-283.

De Sanctis, Francesco, Lamolinara, Alessia, Boschi, Federico, Musiu, Chiara, Caligola, Simone, Trovato, Rosalinda, Fiore, Alessandra, Frusteri, Cristina, Anselmi, Cristina, Poffe, Ornella, Cestari, Tiziana, Canè, Stefania, Sartoris, Silvia, Giugno, Rosalba, Del Rosario, Giulia, Zappacosta, Barbara, Del Pizzo, Francesco, Fassan, Matteo, Dugnani, Erica, Piemonti, Lorenzo, Bottani, Emanuela, Decimo, Ilaria, Paiella, Salvatore, Salvia, Roberto, Lawlor, Rita Teresa, Corbo, Vincenzo, Park, Youngkyu, Tuveson, David A, Bassi, Claudio, Scarpa, Aldo, Iezzi, Manuela, Ugel, Stefano, Bronte, Vincenzo (January 2022) Interrupting the nitrosative stress fuels tumor-specific cytotoxic T lymphocytes in pancreatic cancer. Journal for ImmunoTherapy of Cancer, 10 (1). e003549-e003549. ISSN 2051-1426

Delas, M. J., Jackson, B. T., Kovacevic, T., Vangelisti, S., Munera Maravilla, E., Wild, S. A., Stork, E. M., Erard, N., Knott, S. R. V., Hannon, G. J. (April 2019) lncRNA Spehd Regulates Hematopoietic Stem and Progenitor Cells and Is Required for Multilineage Differentiation. Cell Rep, 27 (3). 719-729.e6.

Delevich, K., Jaaro-Peled, H., Penzo, M., Sawa, A., Li, B. (February 2020) Parvalbumin interneuron dysfunction in a thalamo-prefrontal cortical circuit in Disc1 locus impairment mice. eNeuro. ISSN 2373-2822

Demir, E., Li, K., Bobrowski-Khoury, N., Sanders, J. I., Beynon, R. J., Hurst, J. L., Kepecs, A., Axel, R. (January 2020) The pheromone darcin drives a circuit for innate and reinforced behaviours. Nature, 578 (7793). pp. 137-141. ISSN 0028-0836

Deng, Hanfei, Xiao, Xiong, Yang, Tao, Ritola, Kimberly, Hantman, Adam, Li, Yulong, Huang, Z Josh, Li, Bo (December 2021) A genetically defined insula-brainstem circuit selectively controls motivational vigor. Cell. ISSN 0092-8674

Dent, P., Booth, L., Roberts, J. L., Liu, J., Poklepovic, A., Lalani, A. S., Tuveson, D., Martinez, J., Hancock, J. F. (June 2019) Neratinib inhibits Hippo/YAP signaling, reduces mutant K-RAS expression, and kills pancreatic and blood cancer cells. Oncogene. ISSN 0950-9232

Denton, A. E., Carr, E. J., Magiera, L. P., Watts, A. J. B., Fearon, D. T. (July 2019) Embryonic FAP(+) lymphoid tissue organizer cells generate the reticular network of adult lymph nodes. J Exp Med, 216 (10). pp. 2242-2252. ISSN 0022-1007

Denton, A. E., Roberts, E. W., Fearon, D. T. (August 2018) Stromal Cells in the Tumor Microenvironment. In: Advances in Experimental Medicine and Biology. Springer International Publishing AG, pp. 99-114.

Devaraj, Anantharam, Singh, Manvendra, Narayanavari, Suneel A, Yong, Guo, Chen, Jiaxuan, Wang, Jichang, Becker, Mareike, Walisko, Oliver, Schorn, Andrea, Cseresznyés, Zoltán, Raskó, Tamás, Radscheit, Kathrin, Selbach, Matthias, Ivics, Zoltán, Izsvák, Zsuzsanna (April 2023) HMGXB4 Targets Sleeping Beauty Transposition to Germinal Stem Cells. International Journal of Molecular Sciences, 24 (8). p. 7283. ISSN 1661-6596

Doepner, Miriam, Lee, Inyoung, Natale, Christopher A, Brathwaite, Roderick, Venkat, Swati, Kim, Sung Hoon, Wei, Yiliang, Vakoc, Christopher R, Capell, Brian C, Katzenellenbogen, John A, Katzenellenbogen, Benita S, Feigin, Michael E, Ridky, Todd W (September 2022) Endogenous DOPA inhibits melanoma through suppression of CHRM1 signaling. Science Advances, 8 (35). eabn4007. ISSN 2375-2548

Dokshin, G. A., Davis, G. M., Sawle, A. D., Eldridge, M. D., Nicholls, P. K., Gourley, T. E., Romer, K. A., Molesworth, L. W., Tatnell, H. R., Ozturk, A. R., de Rooij, D. G., Hannon, G. J., Page, D. C., Mello, C. C., Carmell, M. A. (December 2019) GCNA Interacts with Spartan and Topoisomerase II to Regulate Genome Stability. Dev Cell. ISSN 1534-5807 (Public Dataset)

Domínguez, Soledad, Ma, Liang, Yu, Han, Pouchelon, Gabrielle, Mayer, Christian, Spyropoulos, George D, Cea, Claudia, Buzsáki, György, Fishell, Gordon, Khodagholy, Dion, Gelinas, Jennifer N (July 2021) A transient postnatal quiescent period precedes emergence of mature cortical dynamics. eLife, 10. ISSN 2050-084X

Dong, Ao, He, Kaikai, Dudok, Barna, Farrell, Jordan S, Guan, Wuqiang, Liput, Daniel J, Puhl, Henry L, Cai, Ruyi, Wang, Huan, Duan, Jiali, Albarran, Eddy, Ding, Jun, Lovinger, David M, Li, Bo, Soltesz, Ivan, Li, Yulong (November 2021) A fluorescent sensor for spatiotemporally resolved imaging of endocannabinoid dynamics in vivo. Nature Biotechnology. ISSN 1087-0156

Dore, K., Pao, Y., Soria Lopez, J., Aronson, S., Zhan, H., Ghosh, S., Merrill, S., Zador, A. M., Malinow, R., Kebschull, J. M. (January 2020) SYNPLA, a method to identify synapses displaying plasticity after learning. Proc Natl Acad Sci U S A, 117 (6). pp. 3214-3219. ISSN 0027-8424 (Public Dataset)

Dos Santos, C. O., Rebbeck, C., Rozhkova, E., Valentine, A., Samuels, A., Kadiri, L. R., Osten, P., Harris, E. Y., Uren, P. J., Smith, A. D., Hannon, G. J. (2013) Molecular hierarchy of mammary differentiation yields refined markers of mammary stem cells. Proceedings of the National Academy of Sciences of the United States of America, 110 (18). pp. 7123-7130. ISSN 0027-8424

Dreyer, Stephan B, Upstill-Goddard, Rosie, Paulus-Hock, Viola, Paris, Clara, Lampraki, Eirini-Maria, Dray, Eloise, Serrels, Bryan, Caligiuri, Giuseppina, Rebus, Selma, Plenker, Dennis, Galluzzo, Zachary, Brunton, Holly, Cunningham, Richard, Tesson, Mathias, Nourse, Craig, Bailey, Ulla-Maja, Jones, Marc, Moran-Jones, Kim, Wright, Derek W, Duthie, Fraser, Oien, Karin, Evers, Lisa, McKay, Colin J, McGregor, Grant A, Gulati, Aditi, Brough, Rachel, Bajrami, Ilirjana, Pettitt, Stephan, Dziubinski, Michele L, Candido, Juliana, Balkwill, Frances, Barry, Simon T, Grützmann, Robert, Rahib, Lola, Glasgow Precision Oncology Laboratory,, Australian Pancreatic Cancer Genome Initiative, Johns, Amber, Pajic, Marina, Froeling, Fieke EM, Beer, Phillip, Musgrove, Elizabeth A, Petersen, Gloria M, Ashworth, Alan, Frame, Margaret C, Crawford, Howard C, Simeone, Diane M, Lord, Chris, Mukhopadhyay, Debabrata, Pilarsky, Christian, Tuveson, David A, Cooke, Susanna L, Jamieson, Nigel B, Morton, Jennifer P, Sansom, Owen J, Bailey, Peter J, Biankin, Andrew V, Chang, David K (January 2021) Targeting DNA Damage Response and Replication Stress in Pancreatic Cancer. Gastroenterology, 160 (1). 362-377.e13. ISSN 0016-5085

Du, Yanfang, Lunde, China, Li, Yunfu, Jackson, David, Hake, Sarah, Zhang, Zuxin (February 2021) Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize. Proceedings of the National Academy of Sciences of USA, 118 (7). e2019218118-e2019218118. ISSN 0027-8424

Dudok, Barna, Szoboszlay, Miklos, Paul, Anirban, Klein, Peter M, Liao, Zhenrui, Hwaun, Ernie, Szabo, Gergely G, Geiller, Tristan, Vancura, Bert, Wang, Bor-Shuen, McKenzie, Sam, Homidan, Jesslyn, Klaver, Lianne MF, English, Daniel F, Huang, Z Josh, Buzsáki, György, Losonczy, Attila, Soltesz, Ivan (October 2021) Recruitment and inhibitory action of hippocampal axo-axonic cells during behavior. Neuron. ISSN 0896-6273

Dugourd, Aurelien, Kuppe, Christoph, Sciacovelli, Marco, Gjerga, Enio, Gabor, Attila, Emdal, Kristina B, Vieira, Vitor, Bekker-Jensen, Dorte B, Kranz, Jennifer, Bindels, Eric MJ, Costa, Ana SH, Sousa, Abel, Beltrao, Pedro, Rocha, Miguel, Olsen, Jesper V, Frezza, Christian, Kramann, Rafael, Saez-Rodriguez, Julio (January 2021) Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses. Molecular Systems Biology, 17 (1). e9730. ISSN 1744-4292

Dulmovits, Brian M, Tang, Yuefeng, Papoin, Julien, He, Mingzhu, Li, Jianhua, Yang, Huan, Addorisio, Meghan E, Kennedy, Lauren, Khan, Mushran, Brindley, Elena C, Ashley, Ryan J, Ackert-Bicknell, Cheryl, Hale, John, Kurita, Ryo Kurita, Nakamura, Yukio, Diamond, Betty, Barnes, Betsy J, Hermine, Olivier, Gallagher, Patrick G, Steiner, Laurie Ann, Lipton, Jeffrey M, Taylor, Naomi, Mohandas, Narla, Andersson, Ulf, Al-Abed, Yousef, Tracey, Kevin J, Blanc, Lionel (January 2022) HMGB1-Mediated Restriction of EPO Signaling Contributes to Anemia of Inflammation. Blood. ISSN 0006-4971

Dvorkin, Roman, Shea, Stephen D (February 2022) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior in mice. The Journal of Neuroscience. ISSN 0270-6474

de Ruiter Swain, Jed, Michalopoulou, Evdokia, Noch, Evan K, Lukey, Michael J, Van Aelst, Linda (August 2023) Metabolic partitioning in the brain and its hijacking by glioblastoma. Genes and Development, 37. pp. 681-702. ISSN 0890-9369

E

Ebine, K., Kumar, K., Pham, T. N., Shields, M. A., Collier, K. A., Shang, M., DeCant, B. T., Urrutia, R., Hwang, R. F., Grimaldo, S., Principe, D. R., Grippo, P. J., Bentrem, D. J., Munshi, H. G. (September 2018) Interplay between interferon regulatory factor 1 and BRD4 in the regulation of PD-L1 in pancreatic stellate cells. Sci Rep, 8 (1). p. 13225. ISSN 2045-2322

Edwards, J. A., Cline, H. T. (February 1999) Light-induced calcium influx into retinal axons is regulated by presynaptic nicotinic acetylcholine receptor activity in vivo. Journal of Neurophysiology, 81 (2). pp. 895-907. ISSN 0022-3077 (Print)

Egeblad, M. (July 2018) Inflammation-induced neutrophil extracellular traps (NETs) awaken dormant cancer in the lung microenvironment. Cancer Research, 78 (13 S). Meeting Abstract SY38-01. ISSN 0008-5472

Egeblad, M. (2012) c-fms+ myeloid cells respond to injection of E. coli in a mammary gland. [Video] (Unpublished)

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Foxp3+ regulatory T cells migrate along blood vessels and at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Migration of Foxp3+ regulatory T-lymphocytes is stopped in response to hypoxia. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) c-fms+ myeloid cells migrate in the normal mammary gland. [Video]

Egeblad, M., Nakasone, E. S., Werb, Z. (2010) Migration of CXCR6+ activated/memory T-cells in the tumor microenvironment. [Video]

Egeblad, M., Nakasone, E. S., Werb, Z. (2010) Migration of CXCR6+ activated/memory T-cells is stopped in response to hypoxia. [Video]

Egeblad, M., de Visser, K. E. (February 2019) Sticking together helps cancer to spread. Nature, 566 (7745). pp. 459-460. ISSN 0028-0836

Ehrenhofer-Wolfer, K., Puchner, T., Schwarz, C., Rippka, J., Blaha-Ostermann, S., Strobl, U., Hormann, A., Bader, G., Kornigg, S., Zahn, S., Sommergruber, W., Schweifer, N., Zichner, T., Schlattl, A., Neumuller, R. A., Shi, J., Vakoc, C. R., Kogl, M., Petronczki, M., Kraut, N., Pearson, M. A., Wohrle, S. (August 2019) SMARCA2-deficiency confers sensitivity to targeted inhibition of SMARCA4 in esophageal squamous cell carcinoma cell lines. Sci Rep, 9 (1). p. 11661. ISSN 2045-2322

Elkin, Rena, Oh, Jung Hun, Dela Cruz, Filemon, Norton, Larry, Deasy, Joseph O, Kung, Andrew L, Tannenbaum, Allen R (January 2024) Dynamic network curvature analysis of gene expression reveals novel potential therapeutic targets in sarcoma. Scientific Reports, 14 (1). p. 488. ISSN 2045-2322 (Public Dataset)

Ellis, L., Bots, M., Lindemann, R. K., Bolden, J. E., Newbold, A., Cluse, L. A., Scott, C. L., Strasser, A., Atadja, P., Lowe, S. W., Johnstone, R. W. (July 2009) The histone deacetylase inhibitors LAQ824 and LBH589 do not require death receptor signaling or a functional apoptosome to mediate tumor cell death or therapeutic efficacy. Blood, 114 (2). pp. 380-393.

Elyada, E., Bolisetty, M., Laise, P., Flynn, W. F., Courtois, E. T., Burkhart, R. A., Teinor, J. A., Belleau, P., Biffi, G., Lucito, M. S., Sivajothi, S., Armstrong, T. D., Engle, D. D., Yu, K. H., Hao, Y., Wolfgang, C. L., Park, Y., Preall, J., Jaffee, E. M., Califano, A., Robson, P., Tuveson, D. A. (June 2019) Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts. Cancer Discov, 9 (8). pp. 1102-1123. ISSN 2159-8274

Ende, G., Walter, S., Welzel, H., Demirakca, T., Wokrina, T., Ruf, M., Ulrich, M., Diehl, A., Henn, F. A., Mann, K. (August 2006) Alcohol consumption significantly influences the MR signal of frontal choline-containing compounds. Neuroimage, 32 (2). pp. 740-6. ISSN 1053-8119 (Print)1053-8119 (Linking)

Engel, Tatiana (May 2022) Volatile neurons unite to stabilize visual experience. Nature, 605 (7911). pp. 625-626. ISSN 0028-0836

Engel, T. A., Steinmetz, N. A. (October 2019) New perspectives on dimensionality and variability from large-scale cortical dynamics. Curr Opin Neurobiol, 58. pp. 181-190. ISSN 0959-4388

Engle, D. D., Tiriac, H., Rivera, K. D., Pommier, A., Whalen, S., Oni, T. E., Alagesan, B., Lee, E. J., Yao, M. A., Lucito, M. S., Spielman, B., Da Silva, B., Schoepfer, C., Wright, K., Creighton, B., Afinowicz, L., Yu, K. H., Grutzmann, R., Aust, D., Gimotty, P. A., Pollard, K. S., Hruban, R. H., Goggins, M. G., Pilarsky, C., Park, Y., Pappin, D. J., Hollingsworth, M. A., Tuveson, D. A. (June 2019) The glycan CA19-9 promotes pancreatitis and pancreatic cancer in mice. Science, 364 (6446). pp. 1156-1162. ISSN 0036-8075

Eveland, A. L., Jackson, D. P. (May 2012) Sugars, signalling, and plant development. Journal of Experimental Botany, 63 (9). pp. 3367-3377. ISSN 0022-0957

Ewald, A. J., Werb, Z., Egeblad, M. (February 2011) Preparation of mice for long-term intravital imaging of the mammary gland. Cold Spring Harbor Protocols, 2011 (2). ISSN 1559-6095

Ewald, A. J., Werb, Z., Egeblad, M. (2009) c-fms+ myeloid cells migrate in response to wounding on the surface of a normal mammary gland. [Video]

F

Fang, Han, Huang, Yi-Fei, Radhakrishnan, Aditya, Siepel, Adam, Lyon, Gholson J., Schatz, Michael C. (February 2018) Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution. Cell Systems, 6 (2). pp. 180-191. ISSN 2405-4712

Feigin, M. E., Muthuswamy, S. K. (October 2009) Polarity proteins regulate mammalian cell-cell junctions and cancer pathogenesis. Curr Opin Cell Biol, 21 (5). 694-700 .

Feigman, M.J., Moss, M.A., Chen, C., Cyrill, S.L., Cicone, M.F., Trousdell, M.C., Yang, S.-T., Frey, W.D., Wilkinson, J.E., Dos Santos, C. O. (May 2020) Pregnancy Reprograms the Epigenome of Mammary Epithelial Cells and Blocks the Development of Premalignant Lesions. Nat Commun, 11 (1). p. 2649. ISSN 2041-1723

Fein, M. R., He, X. Y., Almeida, A. S., Pommier, A., Bruzas, E., Eberhardt, A., Wilkinson, J. E., dos Santos, C., Egeblad, M. (May 2018) Targeting cancer cell CCR2 enhances synergistic immune surveillance in breast cancer. Cancer Research, 78 (10 Sup). pp. 75-76. ISSN 0008-5472

Fein, Miriam, He, Xue-Yan, Almeida, Ana, Bružas, Emilis, Pommier, Arnaud, Yan, Ran, Eberhardt, Anaïs, Fearon, Douglas, Van Aelst, Linda, Wilkinson, John, dos Santos, Camila, Egeblad, Mikala (August 2018) Cancer cell CCR2 orchestrates suppression of the adaptive immune response. bioRxiv.

Fein, Miriam R, He, Xue-Yan, Almeida, Ana S, Bružas, Emilis, Pommier, Arnaud, Yan, Ran, Eberhardt, Anaïs, Fearon, Douglas T, Van Aelst, Linda, Wilkinson, John Erby, Dos Santos, Camila O, Egeblad, Mikala (October 2020) Cancer cell CCR2 orchestrates suppression of the adaptive immune response. Journal of Experimental Medicine, 217 (10). ISSN 0022-1007

Felsen, G., Mainen, Z. F. (July 2012) Midbrain contributions to sensorimotor decision making. Journal of Neurophysiology, 108 (1). pp. 135-147. ISSN 0022-3077

Fendt, M., Lex, A., Falkai, P., Henn, F. A., Schmitt, A. (July 2008) Behavioural alterations in rats following neonatal hypoxia and effects of clozapine: implications for schizophrenia. Pharmacopsychiatry, 41 (4). pp. 138-45. ISSN 0176-3679 (Print)0176-3679 (Linking)

Feng, Xiang, Noguchi, Yasunori, Barbon, Marta, Stillman, Bruce, Speck, Christian, Li, Huilin (June 2021) The structure of ORC–Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6. Nature Communications, 12 (1). ISSN 2041-1723

Fenton, André A, Hurtado, José R, Broek, Jantine AC, Park, EunHye, Mishra, Bud (August 2023) Do Place Cells Dream of Deceptive Moves in a Signaling Game? Neuroscience, 529. pp. 129-147. ISSN 0306-4522

Fernandez-Vega, Virneliz, Hou, Shurong, Plenker, Dennis, Tiriac, Hervé, Baillargeon, Pierre, Shumate, Justin, Scampavia, Louis, Seldin, Jan, Souza, Glauco R, Tuveson, David A, Spicer, Timothy P (March 2022) Lead Identification using 3D Models of Pancreatic Cancer: Development of 3D Tumor Models for High-throughput Screening. Slas Discovery. ISSN 2472-5552

Ferraro, Emanuela, Singh, Jasmeet, Patil, Sujata, Razavi, Pedram, Modi, Shanu, Chandarlapaty, Sarat, Barrio, Andrea V, Malani, Rachna, Mellinghoff, Ingo K, Boire, Adrienne, Wen, Hannah Y, Brogi, Edi, Seidman, Andrew D, Norton, Larry, Robson, Mark E, Dang, Chau T (March 2022) Incidence of brain metastases in patients with early HER2-positive breast cancer receiving neoadjuvant chemotherapy with trastuzumab and pertuzumab. npj Breast Cancer, 8 (1). p. 37. ISSN 2374-4677

Ferrer, Miriam, Janowitz, Tobias (June 2022) Training the host organism to enhance anti-cancer immunity. Cancer Cell. S1535-6108(22)00267. ISSN 1535-6108

Ferro, Austin, Auguste, Yohan SS, Cheadle, Lucas (2021) Microglia, Cytokines, and Neural Activity: Unexpected Interactions in Brain Development and Function. Frontiers in Immunology, 12. p. 703527. ISSN 1664-3224

Ferro, Austin, Cheadle, Lucas (August 2022) When the levee of sympathetic outflow breaks. Immunity, 55 (8). pp. 1334-1336. ISSN 1074-7613

Fields, Peter D, Waneka, Gus, Naish, Matthew, Schatz, Michael C, Henderson, Ian R, Sloan, Daniel B (April 2022) Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome. Genome Biology and Evolution, 14 (5). evac059. ISSN 1759-6653

Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)

Fischer, Kyle B, Collins, Hannah K, Pang, Yan, Roy, Dheeraj S, Zhang, Ying, Feng, Guoping, Li, Shu-Jing, Kepecs, Adam, Callaway, Edward M (2022) Monosynaptic restriction of the anterograde herpes simplex virus strain H129 for neural circuit tracing. Journal of Comparative Neurology. ISSN 0021-9967

Fischer, Stephan, Crow, Megan, Harris, Benjamin D, Gillis, Jesse (July 2021) Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor. Nature Protocols. ISSN 1754-2189

Fischer, Stephan, Gillis, Jesse (November 2021) How many markers are needed to robustly determine a cell's type? iScience, 24 (11). p. 103292. ISSN 2589-0042

Fishell, G., Kepecs, A. (July 2019) Interneuron Types as Attractors and Controllers. Annu Rev Neurosci. ISSN 0147-006x

Fisher, Matthew L, Balinth, Seamus, Hwangbo, Yon, Wu, Caizhi, Ballon, Carlos, Goldberg, Gary L, Mills, Alea A (August 2023) Cancer-associated fibroblasts promote cancer stemness by inducing expression of the chromatin-modifying protein CBX4 in squamous cell carcinoma. Carcinogenesis, 44 (6). pp. 485-496. ISSN 0143-3334

Fisher, M. L., Balinth, S., Mills, A. A. (September 2020) p63-related signaling at a glance. J Cell Sci, 133 (17). ISSN 0021-9533 (Print)0021-9533

Fisher, Matthew L, Balinth, Seamus, Hwangbo, Yon, Wu, Caizhi, Ballon, Carlos, Wilkinson, John E, Goldberg, Gary L, Mills, Alea A (October 2021) BRD4 REGULATES TRANSCRIPTION FACTOR ∆Np63αTO DRIVE A CANCER STEM CELL PHENOTYPE IN SQUAMOUS CELL CARCINOMAS. Cancer Research. canres.0707.2021-canres.0707.2021. ISSN 0008-5472

Fisher, Matthew L, Balinth, Seamus, Mills, Alea A (September 2022) ΔNp63α in cancer: importance and therapeutic opportunities. Trends in Cell Biology. S0962-8924(22)00194. ISSN 0962-8924

Fiskus, Warren, Mill, Christopher P, Nabet, Behnam, Perera, Dimuthu, Birdwell, Christine, Manshouri, Taghi, Lara, Bernardo, Kadia, Tapan M, DiNardo, Courtney, Takahashi, Koichi, Daver, Naval, Bose, Prithviraj, Masarova, Lucia, Pemmaraju, Naveen, Kornblau, Steven, Borthakur, Gautam, Montalban-Bravo, Guillermo, Manero, Guillermo Garcia, Sharma, Sunil, Stubbs, Matthew, Su, Xiaoping, Green, Michael R, Coarfa, Cristian, Verstovsek, Srdan, Khoury, Joseph D, Vakoc, Christopher R, Bhalla, Kapil N (May 2021) Superior efficacy of co-targeting GFI1/KDM1A and BRD4 against AML and post-MPN secondary AML cells. Blood Cancer Journal, 11 (5). p. 98. ISSN 2044-5385

Fleischer, J. G., Schulte, R., Tsai, H. H., Tyagi, S., Ibarra, A., Shokhirev, M. N., Huang, L., Hetzer, M. W., Navlakha, S. (December 2018) Predicting age from the transcriptome of human dermal fibroblasts. Genome Biol, 19 (1). p. 221. ISSN 1474-7596 (Public Dataset)

Flint, T. R., Jones, J. O., Ferrer, M., Colucci, F., Janowitz, T. (March 2018) A comparative analysis of immune privilege in pregnancy and cancer in the context of checkpoint blockade immunotherapy. Semin Oncol. ISSN 0093-7754

Foronda, M., Tarumoto, Y., Schatoff, E. M., Leach, B. I., Diaz, B. J., Zimmerman, J., Goswami, S., Shusterman, M., Vakoc, C. R., Dow, L. E. (December 2019) Tankyrase inhibition sensitizes cells to CDK4 blockade. PLoS One, 14 (12). e0226645. ISSN 1932-6203

Fraenkel, Merav, Novack, Victor, Mizrakli, Yuval, Koretz, Michael, Siris, Ethel, Norton, Larry, Shafat, Tali, Geffen, David B (February 2022) Bone mineral density in women newly diagnosed with breast cancer: a prospective cohort study. npj Breast Cancer, 8 (1). p. 21. ISSN 2374-4677

Franch-Expósito, Sebastià, Mehine, Miika, Ptashkin, Ryan N, Bolton, Kelly L, Bandlamudi, Chaitanya, Srinivasan, Preethi, Zhang, Linda, Goodell, Margaret A, Gedvilaite, Erika, Menghrajani, Kamal, Sánchez-Vela, Pablo, Mandelker, Diana, Comen, Elizabeth, Norton, Larry, Benayed, Ryma, Gao, Teng, Papaemmanuil, Elli, Taylor, Barry, Levine, Ross, Offit, Kenneth, Stadler, Zsofia, Berger, Michael F, Zehir, Ahmet (August 2023) Associations Between Cancer Predisposition Mutations and Clonal Hematopoiesis in Patients With Solid Tumors. JCO Precision Oncology, 7 (7). e2300070. ISSN 2473-4284

Frederiksen, Sabrina B, Holm, Lise L, Larsen, Martin R, Doktor, Thomas K, Andersen, Henriette S, Hastings, Michelle L, Hua, Yimin, Krainer, Adrian R, Andresen, Brage S (March 2021) Identification of SRSF10 as a regulator of SMN2 ISS-N1. Human Mutation, 42 (3). pp. 246-260. ISSN 1059-7794

Freed-Pastor, W. A., Mizuno, H., Zhao, X., Langerød, A., Moon, S. H., Rodriguez-Barrueco, R., Barsotti, A., Chicas, A., Li, W., Polotskaia, A., Bissell, M. J., Osborne, T. F., Tian, B., Lowe, S. W., Silva, J. M., Børresen-Dale, A. L., Levine, A. J., Bargonetti, J., Prives, C. (January 2012) Mutant p53 disrupts mammary tissue architecture via the mevalonate pathway. Cell, 148 (1-2). pp. 244-258. ISSN 00928674 (ISSN)

Froeling, F., Tuveson, D. (May 2018) Pancreatic cancer foiled by a switch of tumour subtype. Nature, 557 (7706). pp. 500-501. ISSN 0028-0836

Froeling, F. E. M., Mosur Swamynathan, M., Deschenes, A., Chio, I. I. C., Brosnan, E., Yao, M. A., Alagesan, P., Lucito, M. S., Li, J., Chang, A. Y., Trotman, L. C., Belleau, P., Park, Y., Rogoff, H. A., Watson, J. D., Tuveson, D. A. (September 2019) Bioactivation of napabucasin triggers reactive oxygen species-mediated cancer cell death. Clin Cancer Res, 25 (23). pp. 7162-7174. ISSN 1078-0432 (Print)1078-0432

Funamizu, A, Marbach, F, Zador, AM (October 2023) Stable sound decoding despite modulated sound representation in the auditory cortex. Current Biology, 33 (20). 4470-4483.e7. ISSN 0960-9822

Funamizu, Akihiro, Marbach, Fred, Zador, Anthony M (September 2023) Stable sound decoding despite modulated sound representation in the auditory cortex. bioRxiv. (Submitted)

Furlan, A., Adameyko, I. (February 2018) Schwann cell precursor: a neural crest cell in disguise? Dev Biol, 444. S25-S35. ISSN 0012-1606

G

Gagnière, Johan, Dupré, Aurélien, Gholami, Sepideh S, Pezet, Denis, Boerner, Thomas, Gönen, Mithat, Kingham, Thomas P, Allen, Peter J, Balachandran, Vinod P, De Matteo, Ronald P, Drebin, Jeffrey A, Yaeger, Rona, Kemeny, Nancy E, Jarnagin, William R, D'Angelica, Michael I (January 2020) Is Hepatectomy Justified for BRAF Mutant Colorectal Liver Metastases?: A Multi-institutional Analysis of 1497 Patients. Annals of Surgery, 271 (1). pp. 147-154. ISSN 0003-4932

Gallo, N. B., Paul, A., Van Aelst, L. (June 2020) Shedding Light on Chandelier Cell Development, Connectivity, and Contribution to Neural Disorders. Trends in Neurosciences, 43 (8). pp. 565-580. ISSN 0166-2236

Gallo, Nicholas B, Berisha, Artan, Van Aelst, Linda (March 2022) Microglia regulate chandelier cell axo-axonic synaptogenesis. Proceedings of the National Academy of Sciences of USA, 119 (11). e2114476119. ISSN 0027-8424

Gao, X., Enikolopov, G. N., Chen, J. (October 2009) Moderate traumatic brain injury promotes proliferation of quiescent neural progenitors in the adult hippocampus. Experimental Neurology, 219 (2). pp. 516-523.

Gao, ChongFeng, Wisniewski, Luke, Liu, Ying, Staal, Ben, Beddows, Ian, Plenker, Dennis, Aldakkak, Mohammed, Hall, Johnathan, Barnett, Daniel, Gouda, Mirna Kheir, Allen, Peter, Drake, Richard, Zureikat, Amer, Huang, Ying, Evans, Douglas, Singhi, Aatur, Brand, Randall E, Tuveson, David A, Tsai, Susan, Haab, Brian B (January 2021) Detection of Chemotherapy-resistant Pancreatic Cancer Using a Glycan Biomarker, sTRA. Clinical Cancer Research, 27 (1). pp. 226-236. ISSN 1078-0432

Gao, Yuan, He, Xue-Yan, Wu, Xiaoli S, Huang, Yu-Han, Toneyan, Shushan, Ha, Taehoon, Ipsaro, Jonathan J, Koo, Peter K, Joshua-Tor, Leemor, Bailey, Kelly M, Egeblad, Mikala, Vakoc, Christopher R (January 2023) ETV6 dependency in Ewing sarcoma by antagonism of EWS-FLI1-mediated enhancer activation. Nature Cell Biology. ISSN 1465-7392 (Public Dataset)

Garipcan, Aybuke, Eskiocak, Onur, Subhash, Santhilal, Ozler, Kadir, Yueh, Brian, Chung, Charlie, Ergin, Ilgin, Gautier, Nelson, Habel, Jill, Rubino, Rachel, Van der Velden, Adrianus WM, Beyaz, Semir (2023) Epigenetic mechanisms of epithelial - immune interactions that shape immune surveillance in the intestinal epithelium. In: UNSPECIFIED.

Gaudinier, A., Rodriguez-Medina, J., Zhang, L., Olson, A., Liseron-Monfils, C., Bagman, A. M., Foret, J., Abbitt, S., Tang, M., Li, B., Runcie, D. E., Kliebenstein, D. J., Shen, B., Frank, M. J., Ware, D., Brady, S. M. (October 2018) Transcriptional regulation of nitrogen-associated metabolism and growth. Nature, 563 (7730). pp. 259-264. ISSN 0028-0836

Gaudino, Stephen J, Singh, Ankita, Huang, Huakang, Padiadpu, Jyothi, Jean-Pierre, Makheni, Kempen, Cody, Bahadur, Tej, Shiomitsu, Kiyoshi, Blumberg, Richard, Shroyer, Kenneth R, Beyaz, Semir, Shulzhenko, Natalia, Morgun, Andrey, Kumar, Pawan (February 2024) Intestinal IL-22RA1 signaling regulates intrinsic and systemic lipid and glucose metabolism to alleviate obesity-associated disorders. Nature Communications, 15 (1). p. 1597. ISSN 2041-1723 (Public Dataset)

Gaudino, S. J., Beaupre, M., Lin, X., Joshi, P., Rathi, S., McLaughlin, P. A., Kempen, C., Mehta, N., Eskiocak, O., Yueh, B., Blumberg, R. S., van der Velden, A. W. M., Shroyer, K. R., Bialkowska, A. B., Beyaz, S., Kumar, P. (October 2020) IL-22 receptor signaling in Paneth cells is critical for their maturation, microbiota colonization, Th17-related immune responses, and anti-Salmonella immunity. Mucosal Immunol. ISSN 1933-0219

Ge, Eva J, Bush, Ashley I, Casini, Angela, Cobine, Paul A, Cross, Justin R, DeNicola, Gina M, Dou, Q Ping, Franz, Katherine J, Gohil, Vishal M, Gupta, Sanjeev, Kaler, Stephen G, Lutsenko, Svetlana, Mittal, Vivek, Petris, Michael J, Polishchuk, Roman, Ralle, Martina, Schilsky, Michael L, Tonks, Nicholas K, Vahdat, Linda T, Van Aelst, Linda, Xi, Dan, Yuan, Peng, Brady, Donita C, Chang, Christopher J (November 2021) Connecting copper and cancer: from transition metal signalling to metalloplasia. Nature Reviews Cancer. ISSN 1474-175X

Gearty, Sofia V, Dündar, Friederike, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Shakiba, Mojdeh, Sanchez-Rivera, Francisco J, Socci, Nicholas D, Trivedi, Prerak, Lowe, Scott W, Lauer, Peter, Mohibullah, Neeman, Viale, Agnes, DiLorenzo, Teresa P, Betel, Doron, Schietinger, Andrea (November 2021) An autoimmune stem-like CD8 T cell population drives type 1 diabetes. Nature. ISSN 0028-0836

Gegenhuber, B., Tollkuhn, J. (June 2019) Sex Differences in the Epigenome: A Cause or Consequence of Sexual Differentiation of the Brain? Genes (Basel), 10 (6). E432. ISSN 2073-4425 (Print)2073-4425

Gegenhuber, Bruno, Tollkuhn, Jessica (July 2022) Epigenetic Mechanisms of Brain Sexual Differentiation. Cold Spring Harbor Perspectives in Biology. a039099. ISSN 1943-0264

Genkin, Mikhail, Shenoy, Krishna V, Chandrasekaran, Chandramouli, Engel, Tatiana A (July 2023) The dynamics and geometry of choice in premotor cortex. (Submitted)

Ghosh, Arnab, Michels, Judith, Mezzadra, Riccardo, Venkatesh, Divya, Dong, Lauren, Gomez, Ricardo, Samaan, Fadi, Ho, Yu-Jui, Campesato, Luis Felipe, Mangarin, Levi, Fak, John, Suek, Nathan, Holland, Aliya, Liu, Cailian, Abu-Akeel, Mohsen, Bykov, Yonina, Zhong, Hong, Fitzgerald, Kelly, Budhu, Sadna, Chow, Andrew, Zappasodi, Roberta, Panageas, Katherine S, de Henau, Olivier, Ruscetti, Marcus, Lowe, Scott W, Merghoub, Taha, Wolchok, Jedd D (September 2022) Increased p53 expression induced by APR-246 reprograms tumor-associated macrophages to augment immune checkpoint blockade. Journal of Clinical Investigation, 132 (18). e148141. ISSN 0021-9738

Ghosh, D., Nandi, S., Bhattacharjee, S. (October 2018) Combination therapy to checkmate Glioblastoma: clinical challenges and advances. Clin Transl Med, 7 (1). p. 33. ISSN 2001-1326 (Print)

Ghosh, Arunava, Girish, Vishruth, Yuan, Monet Lou, Coakley, Raymond D, Wrennall, Joe A, Alexis, Neil E, Sausville, Erin L, Vasudevan, Anand, Chait, Alexander R, Sheltzer, Jason M, Tarran, Robert (November 2021) Combustible and Electronic Cigarette Exposures Increase ACE2 Activity and SARS-CoV-2 Spike Binding. American Journal of Respiratory and Critical Care Medicine. ISSN 1073-449X

Ghosh, Sanchari, Zador, Anthony M (March 2021) Corticostriatal Plasticity Established by Initial Learning Persists after Behavioral Reversal. eNeuro, 8 (2). pp. 1-10. ISSN 2373-2822

Gialelis, Timothy L, Wang, Zifei, Homer, Joshua A, Yang, Wen-Hsuan, Chung, Taemoon, Hu, Qingting, Smedley, Christopher J, Pawar, Nitin J, Upadhyay, Nitinkumar S, Tuveson, David A, Lyons, Scott K, Lukey, Michael J, Moses, John E (April 2023) Inhibition of mitochondrial metabolism by (-)-jerantinine A: synthesis and biological studies in triple-negative breast cancer cells. MedChemComm, 14 (4). pp. 710-714. ISSN 2632-8682

Giuliano, C. J., Lin, A., Girish, V., Sheltzer, J. M. (August 2019) Generating Single Cell–Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. Current Protocols in Molecular Biology, 128 (1). Art number e100. ISSN 19343639 (ISSN)

Giuliano, C. J., Lin, A., Smith, J. C., Palladino, A. C., Sheltzer, J. M. (February 2018) MELK expression correlates with tumor mitotic activity but is not required for cancer growth. Elife, 7. ISSN 2050-084x

Giuliano, C. J., Lin, A., Girish, V., Sheltzer, J. M. (September 2019) Generating Single Cell-Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. Curr Protoc Mol Biol, 128 (1). e100. ISSN 1934-3639 (Print)1934-3647

Godenschwege, T., Forde, R., Davis, C. P., Paul, A., Beckwith, K., Duttaroy, A. (September 2009) Mitochondrial superoxide radicals differentially affect muscle activity and neural function. Genetics, 183 (1). pp. 175-184.

Goncalves, M. D., Hwang, S. K., Pauli, C., Murphy, C. J., Cheng, Z., Hopkins, B. D., Wu, D., Loughran, R. M., Emerling, B. M., Zhang, G., Fearon, D. T., Cantley, L. C. (January 2018) Fenofibrate prevents skeletal muscle loss in mice with lung cancer. Proc Natl Acad Sci U S A, 115 (4). E743-E752. ISSN 0027-8424

Goodhill, G., Baker, C., Balasubramanian, V., Bazhenov, M., Beck, J., Becker, S., Bethge, M., Boahen, K., Boden, M., Bonin, V., Bouret, S., Fairhall, A., Flash, T., French, R., Gillies, A., Gollisch, T., Gurney, K., Gutkin, B., Hayhoe, M., Hunt, J., Ibbotson, M., Kepecs, A., Kingdom, F., Kropff, E., Longden, K., Marder, E., Miikkulainen, R., Oliva, A., Olshausen, B., Pillow, J., Prenger, R., Redish, D., Rolls, E., Rucci, M., Breakspear, M., Bressloff, P., Bulthoff, H., Burgess, N., Burkitt, A., Butts, D., Carreira-Perpinan, M., Chklovskii, D., Eden, U., Ermentrout, B., Schmidhuber, J., Semyanov, A., Sharpee, T., Smith, A., Sommer, F., Srinivasan, M., Stanley, G., Stopfer, M., Tanaka, H., Theunissen, F., Tranchina, D., Treves, A., Van Ooyen, A., Verschure, P., Vorobyev, M., Wachtler, T., Wallis, G., Willmore, B., Wiskott, L., Wyeth, G., Zanker, J., Zetzsche, C., Zhaoping, L. (2008) Network: Computation in Neural Systems: Editorial. Network: Computation in Neural Systems, 19 (1). pp. 1-2. ISSN 0954898X (ISSN)

Goodwin, Daniel R, Vaughan, Alex, Leible, Daniel, Alon, Shahar, Henry, Gilbert L, Cheng, Anne, Chen, Xiaoyin, Zhang, Ruihan, Xue, Andrew G, Wassie, Asmamaw T, Sinha, Anubhav, Bando, Yosuke, Kajita, Atsushi, Marblestone, Adam H, Zador, Anthony M, Boyden, Edward S, Church, George M, Kohman, Richie E (July 2022) Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics. bioRxiv. (Submitted)

Govek, Eve-Ellen, Wu, Zhuhao, Acehan, Devrim, Molina, Henrik, Rivera, Keith, Zhu, Xiaodong, Fang, Yin, Tessier-Lavigne, Marc, Hatten, Mary Elizabeth (March 2018) Cdc42 Regulates Neuronal Polarity during Cerebellar Axon Formation and Glial-Guided Migration. iScience, 1. pp. 35-48. ISSN 2589-0042

Greene, K. S., Lukey, M. J., Wang, X., Blank, B., Druso, J. E., Lin, M. J., Stalnecker, C. A., Zhang, C., Negron Abril, Y., Erickson, J. W., Wilson, K. F., Lin, H., Weiss, R. S., Cerione, R. A. (December 2019) SIRT5 stabilizes mitochondrial glutaminase and supports breast cancer tumorigenesis. Proc Natl Acad Sci U S A. ISSN 1091-6490 (Public Dataset)

Griffin, A. D., Turtzo, L. C., Parikh, G. Y., Tolpygo, A., Lodato, Z., Moses, A. D., Nair, G., Perl, D. P., Edwards, N. A., Dardzinski, B. J., Armstrong, R. C., Ray-Chaudhury, A., Mitra, P. P., Latour, L. L. (October 2019) Traumatic microbleeds suggest vascular injury and predict disability in traumatic brain injury. Brain, 142 (11). pp. 3550-3564. ISSN 0006-8950

Grinevich, V., Kolleker, A., Eliava, M., Takada, N., Takuma, H., Fukazawa, Y., Shigemoto, R., Kuhl, D., Waters, J., Seeburg, P.H., Osten, P. (October 2009) Fluorescent Arc/Arg3.1 indicator mice: A versatile tool to study brain activity changes in vitro and in vivo. Journal of Neuroscience Methods, 184 (1). pp. 25-36.

Gryder, B. E., Pomella, S., Sayers, C., Wu, X. S., Song, Y., Chiarella, A. M., Bagchi, S., Chou, H. C., Sinniah, R. S., Walton, A., Wen, X., Rota, R., Hathaway, N. A., Zhao, K., Chen, J., Vakoc, C. R., Shern, J. F., Stanton, B. Z., Khan, J. (December 2019) Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma. Nat Genet, 51 (12). pp. 1714-1722. ISSN 1061-4036 (Public Dataset)

Gunner, G., Cheadle, L., Johnson, K. M., Ayata, P., Badimon, A., Mondo, E., Nagy, M. A., Liu, L., Bemiller, S. M., Kim, K. W., Lira, S. A., Lamb, B. T., Tapper, A. R., Ransohoff, R. M., Greenberg, M. E., Schaefer, A., Schafer, D. P. (July 2019) Sensory lesioning induces microglial synapse elimination via ADAM10 and fractalkine signaling. Nat Neurosci, 22 (7). pp. 1075-1088. ISSN 1097-6256 (Print)1097-6256

Guo, X., Keyes, W. M., Papazoglu, C., Zuber, J., Li, W., Lowe, S. W., Vogel, H., Mills, A. A. (December 2009) TAp63 induces senescence and suppresses tumorigenesis in vivo. Nat Cell Biol, 11 (12). 1451–1457.

Gutbrod, MJ, Roche, B, Steinberg, JI, Lakhani, AA, Chang, K, Schorn, AJ, Martienssen, RA (February 2022) Dicer promotes genome stability via the bromodomain transcriptional co-activator BRD4. Nature Communications, 13 (1). p. 1001. ISSN 2041-1723

Gutiérrez, R. A., Stokes, T. L., Thum, K., Xu, X., Obertello, M., Katari, M. S., Tanurdzic, M., Dean, A., Nero, D. C., McClung, C. R., Coruzzi, G. M. (March 2008) Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci U S A, 105 (12). pp. 4939-4944. ISSN 0027-8424

H

Haery, L., Deverman, B. E., Matho, K. S., Cetin, A., Woodard, K., Cepko, C., Guerin, K. I., Rego, M. A., Ersing, I., Bachle, S. M., Kamens, J., Fan, M. (November 2019) Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation. Front Neuroanat, 13. p. 93. ISSN 1662-5129 (Print)1662-5129

Han, Y., Kebschull, J. M., Campbell, R. A. A., Cowan, D., Imhof, F., Zador, A. M., Mrsic-Flogel, T. D. (April 2018) The logic of single-cell projections from visual cortex. Nature, 556 (7699). pp. 51-56. ISSN 0028-0836

Hanasoge Somasundara, Amritha Varshini, Moss, Matthew A, Feigman, Mary J, Chen, Chen, Cyrill, Samantha L, Ciccone, Michael F, Trousdell, Marygrace C, Vollbrecht, Macy, Li, Siran, Kendall, Jude, Beyaz, Semir, Wilkinson, John E, Dos Santos, Camila O (December 2021) Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis. Cell Reports, 37 (10). p. 110099. ISSN 2211-1247

Hansen, Kasper B, Wollmuth, Lonnie P, Bowie, Derek, Furukawa, Hiro, Menniti, Frank S, Sobolevsky, Alexander I, Swanson, Geoffrey T, Swanger, Sharon A, Greger, Ingo H, Nakagawa, Terunaga, McBain, Chris J, Jayaraman, Vasanthi, Low, Chian-Ming, Dell'Acqua, Mark L, Diamond, Jeffrey S, Camp, Chad R, Perszyk, Riley E, Yuan, Hongjie, Traynelis, Stephen F (October 2021) Structure, Function, and Pharmacology of Glutamate Receptor Ion Channels. Pharmacological Reviews, 73 (4). pp. 298-487. ISSN 0031-6997

Harris, James Arthur (September 1921) Leaf-tissue production and water content in a mutant race of Phaseolus vulgaris. Botanical Gazette, 72 (3). pp. 151-161.

Harris, James Arthur, Kirkpatrick, William F., Blakeslee, Albert Francis, Warner, D. E., Card, L. E. (May 1921) The egg records of limited periods as criteria for predicting the egg production of the white leghorn fowl. Genetics, 6 (3). pp. 265-309.

Harris, Reginald Gordon (February 1925) Reversal of function in a species of Oligarces. Biological Bulletin, The, 48 (2). pp. 139-144.

Harvey, C. D., Yasuda, R., Zhong, H., Svoboda, K. (July 2008) The spread of ras activity triggered by activation of a single dendritic spine. Science, 321 (5885). pp. 136-40.

Hausmann, Frances S, Barrett, John M, Martin, Megan E, Zhan, Huiqing, Shepherd, Gordon MG (October 2022) Axonal Barcode Analysis of Pyramidal Tract Projections from Mouse Forelimb M1 and M2. The Journal of Neuroscience, 42 (41). pp. 7733-7743. ISSN 0270-6474

Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W Jim, Zingg, Brian (June 2023) A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology, 21 (6). e3002133. ISSN 1544-9173

Hazra, Rasmani, Utama, Raditya, Naik, Payal, Dobin, Alexander, Spector, David L (October 2023) Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA sequencing datasets. Stem Cell Reports. ISSN 2213-6711

Hazra, Rasmani, Brine, Lily, Garcia, Libia, Benz, Brian, Chirathivat, Napon, Shen, Michael M, Wilkinson, John Erby, Lyons, Scott K, Spector, David L (November 2022) Platr4 is an early embryonic lncRNA that exerts its function downstream on cardiogenic mesodermal lineage commitment. Developmental Cell, 57 (21). 2450-2468.e7. ISSN 1534-5807

He, Shuning, Krens, Sf Gabby, Zhan, Huiqing, Gong, Zhiyuan, Hogendoorn, Pancras Cw, Spaink, Herman P, Snaar-Jagalska, B Ewa (September 2011) A ΔRaf1-ER-inducible oncogenic zebrafish liver cell model identifies hepatocellular carcinoma signatures. Journal of Pathology, 225 (1). pp. 19-28. ISSN 0022-3417

He, Xue-Yan, Gao, Yuan, Ng, David, Michalopoulou, Evdokia, George, Shanu, Adrover, Jose M, Sun, Lijuan, Albrengues, Jean, Daßler-Plenker, Juliane, Han, Xiao, Wan, Ledong, Wu, Xiaoli Sky, Shui, Longling S, Huang, Yu-Han, Liu, Bodu, Su, Chang, Spector, David L, Vakoc, Christopher R, Van Aelst, Linda, Egeblad, Mikala (February 2024) Chronic stress increases metastasis via neutrophil-mediated changes to the microenvironment. Cancer Cell. ISSN 1535-6108

He, M., Huang, Z. J. (February 2018) Genetic approaches to access cell types in mammalian nervous systems. Curr Opin Neurobiol, 50. pp. 109-118. ISSN 0959-4388

He, X. Y., Ng, D., Van Aelst, L., Egeblad, M. (November 2019) Stressing Out about Cancer Immunotherapy. Cancer Cell, 36 (5). pp. 468-470. ISSN 15356108 (ISSN)

He, C., Bozler, J., Janssen, K. A., Wilusz, J. E., Garcia, B. A., Schorn, A. J., Bonasio, R. (January 2021) TET2 chemically modifies tRNAs and regulates tRNA fragment levels. Nature Structural and Molecular Biology, 28 (1). pp. 62-70. ISSN 1545-9993

Heidegger, Simon, Stritzke, Florian, Dahl, Sarah, Daßler-Plenker, Juliane, Joachim, Laura, Buschmann, Dominik, Fan, Kaiji, Sauer, Carolin M, Ludwig, Nils, Winter, Christof, Enssle, Stefan, Li, Suqi, Perl, Markus, Görgens, André, Haas, Tobias, Orberg, Erik Thiele, Göttert, Sascha, Wölfel, Catherine, Engleitner, Thomas, Cortés-Ciriano, Isidro, Rad, Roland, Herr, Wolfgang, Giebel, Bernd, Ruland, Jürgen, Bassermann, Florian, Coch, Christoph, Hartmann, Gunther, Poeck, Hendrik (September 2023) Targeting nucleic acid sensors in tumor cells to reprogram biogenesis and RNA cargo of extracellular vesicles for T cell-mediated cancer immunotherapy. Cell Reports Medicine, 4 (9). p. 101171. ISSN 2666-3791

Helmchen, F., Svoboda, K., Denk, W., Tank, D. W. (November 1999) In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons. Nature Neuroscience, 2 (11). pp. 989-96. ISSN 1097-6256

Helmstaedter, M., Mitra, P. P. (February 2012) Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology, 22 (1). pp. 162-169. ISSN 09594388 (ISSN)

Hendelman, Anat, Zebell, Sophia, Rodriguez-Leal, Daniel, Dukler, Noah, Robitaille, Gina, Wu, Xuelin, Kostyun, Jamie, Tal, Lior, Wang, Peipei, Bartlett, Madelaine E, Eshed, Yuval, Efroni, Idan, Lippman, Zachary B (April 2021) Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection. Cell, 184 (7). 1724-1739.e16. ISSN 0092-8674

Henry, Samantha, Trousdell, Marygrace C, Cyrill, Samantha L, Zhao, Yixin, Feigman, Mary J, Bouhuis, Julia M, Aylard, Dominik A, Siepel, Adam, Dos Santos, Camila O (May 2021) Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland. Journal of Mammary Gland Biology and Neoplasia. ISSN 1083-3021

Hernandez, D. E., Salvadores, N. A., Moya-Alvarado, G., Catalan, R. J., Bronfman, F. C., Court, F. A. (October 2018) Axonal degeneration induced by glutamate-excitotoxicity is mediated by necroptosis. J Cell Sci, 131 (22). ISSN 0021-9533

Hillowe, Andrew, Gordon, Chris, Wang, Liqun, Rizzo, Robert C, Trotman, Lloyd C, Ojima, Iwao, Bialkowska, Agnieszka, Kaczocha, Martin (2023) Fatty acid binding protein 5 regulates docetaxel sensitivity in taxane-resistant prostate cancer cells. PLoS One, 18 (10). e0292483. ISSN 1932-6203

Hirokawa, J., Vaughan, A., Masset, P., Ott, T., Kepecs, A. (December 2019) Frontal cortex neuron types categorically encode single decision variables. Nature, 576 (7787). pp. 446-451. ISSN 0028-0836 (Public Dataset)

Hirschhorn, Daniel, Budhu, Sadna, Kraehenbuehl, Lukas, Gigoux, Mathieu, Schröder, David, Chow, Andrew, Ricca, Jacob M, Gasmi, Billel, De Henau, Olivier, Mangarin, Levi Mark B, Li, Yanyun, Hamadene, Linda, Flamar, Anne-Laure, Choi, Hyejin, Cortez, Czrina A, Liu, Cailian, Holland, Aliya, Schad, Sara, Schulze, Isabell, Betof Warner, Allison, Hollmann, Travis J, Arora, Arshi, Panageas, Katherine S, Rizzuto, Gabrielle A, Duhen, Rebekka, Weinberg, Andrew D, Spencer, Christine N, Ng, David, He, Xue-Yan, Albrengues, Jean, Redmond, David, Egeblad, Mikala, Wolchok, Jedd D, Merghoub, Taha (March 2023) T cell immunotherapies engage neutrophils to eliminate tumor antigen escape variants. Cell, 186 (7). 1432-1447.e17. ISSN 0092-8674 (Public Dataset)

Hirschhorn, D., Ricca, J., Gasmi, B., DeHanau, O., Mangarin, L. M., Budhu, S., Li, Y. Y., Cortez, C., Liu, C. L., Zappasodi, R., Houghton, S., Betof, A., Lacouture, M., Hollman, T., Albrengues, J., Egeblad, M., Wolchok, J. D., Merghoub, T. (May 2018) A delicate interplay between adaptive and innate immunity caused by immunotherapy triggers tumor immunity and aseptic inflammation. Journal of Immunology, 200 (1 supp). Meeting Abstract: 178.42 . ISSN 0022-1767

Ho, Y. J., Anaparthy, N., Molik, D., Mathew, G., Aicher, T., Patel, A., Hicks, J., Gale Hammell, M. (July 2018) Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations. Genome Res, 28 (9). pp. 1353-1363. ISSN 1088-9051

Hodge, R. D., Kowalczyk, T. D., Wolf, S. A., Encinas, J. M., Rippey, C. F., Enikolopov, G. N., Kempermann, G., Hevner, R. F. (April 2008) Intermediate Progenitors in Adult Hippocampal Neurogenesis: Tbr2 Expression and Coordinate Regulation of Neuronal Output. J. Neurosci., 28 (14). pp. 3707-3717.

Hoffmann, Markus, Hofmann-Winkler, Heike, Smith, Joan C, Krüger, Nadine, Arora, Prerna, Sørensen, Lambert K, Søgaard, Ole S, Hasselstrøm, Jørgen Bo, Winkler, Michael, Hempel, Tim, Raich, Lluís, Olsson, Simon, Danov, Olga, Jonigk, Danny, Yamazoe, Takashi, Yamatsuta, Katsura, Mizuno, Hirotaka, Ludwig, Stephan, Noé, Frank, Kjolby, Mads, Braun, Armin, Sheltzer, Jason M, Pöhlmann, Stefan (March 2021) Camostat mesylate inhibits SARS-CoV-2 activation by TMPRSS2-related proteases and its metabolite GBPA exerts antiviral activity. EBioMedicine, 65. p. 103255. ISSN 2352-3964

Holtmaat, A., Bonhoeffer, T., Chow, D. K., Chuckowree, J., De Paola, V., Hofer, S. B., Hubener, M., Keck, T., Knott, G., Lee, W. C., Mostany, R., Mrsic-Flogel, T. D., Nedivi, E., Portera-Cailliau, C., Svoboda, K., Trachtenberg, J. T., Wilbrecht, L. (July 2009) Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat Protoc, 4 (8). pp. 1128-44. ISSN 1750-2799 (Electronic)

Holtmaat, A., De Paola, V., Wilbrecht, L., Knott, G. W. (September 2008) Imaging of experience-dependent structural plasticity in the mouse neocortex in vivo. Behav Brain Res, 192 (1). pp. 20-25.

Hoshii, Takayuki, Cifani, Paolo, Feng, Zhaohui, Huang, Chun-Hao, Koche, Richard, Chen, Chun-Wei, Delaney, Christopher D, Lowe, Scott W, Kentsis, Alex, Armstrong, Scott A (February 2018) A Non-catalytic Function of SETD1A Regulates Cyclin K and the DNA Damage Response. Cell, 172 (5). 1007-1021.e17. ISSN 0092-8674

Hossain, Manzar, Bhalla, Kuhulika, Stillman, Bruce (March 2021) Multiple, short protein binding motifs in ORC1 and CDC6 control the initiation of DNA replication. Molecular Cell. ISSN 1097-2765

Hou, Shurong, Tiriac, Hervé, Sridharan, Banu Priya, Scampavia, Louis, Madoux, Franck, Seldin, Jan, Souza, Glauco R, Watson, Donald, Tuveson, David, Spicer, Timothy P (July 2018) Advanced Development of Primary Pancreatic Organoid Tumor Models for High-Throughput Phenotypic Drug Screening. Slas Discovery, 23 (6). pp. 574-584. ISSN 2472-5552

Hrvatin, S., Hochbaum, D. R., Nagy, M. A., Cicconet, M., Robertson, K., Cheadle, L., Zilionis, R., Ratner, A., Borges-Monroy, R., Klein, A. M., Sabatini, B. L., Greenberg, M. E. (January 2018) Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci, 21 (1). pp. 120-129. ISSN 1097-6256 (Print)1097-6256

Hsu, Y. B., Huang, C. F., Lin, K. T., Kuo, Y. L., Lan, M. C., Lan, M. Y. (June 2019) Podoplanin, a Potential Therapeutic Target for Nasopharyngeal Carcinoma. Biomed Res Int, 2019. p. 7457013.

Hu, Jing, Sánchez-Rivera, Francisco J, Wang, Zhenghan, Johnson, Gabriela N, Ho, Yu-Jui, Ganesh, Karuna, Umeda, Shigeaki, Gan, Siting, Mujal, Adriana M, Delconte, Rebecca B, Hampton, Jessica P, Zhao, Huiyong, Kottapalli, Sanjay, de Stanchina, Elisa, Iacobuzio-Donahue, Christine A, Pe'er, Dana, Lowe, Scott W, Sun, Joseph C, Massagué, Joan (April 2023) STING inhibits the reactivation of dormant metastasis in lung adenocarcinoma. Nature, 616 (7958). pp. 806-813. ISSN 0028-0836 (Public Dataset)

Hu, Thomas, Allam, Mayar, Cai, Shuangyi, Henderson, Walter, Yueh, Brian, Garipcan, Aybuke, Ievlev, Anton V, Afkarian, Maryam, Beyaz, Semir, Coskun, Ahmet F (December 2023) Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology. Nature Communications, 14 (1). p. 8260. ISSN 2041-1723

Hu, Tuo, Shukla, Surendra K, Vernucci, Enza, He, Chunbo, Wang, Dezhen, King, Ryan J, Jha, Kanupriya, Siddhanta, Kasturi, Mullen, Nicholas J, Attri, Kuldeep S, Murthy, Divya, Chaika, Nina V, Thakur, Ravi, Mulder, Scott E, Pacheco, Camila G, Fu, Xiao, High, Robin R, Yu, Fang, Lazenby, Audrey, Steegborn, Clemens, Lan, Ping, Mehla, Kamiya, Rotili, Dante, Chaudhary, Sarika, Valente, Sergio, Tafani, Marco, Mai, Antonello, Auwerx, Johan, Verdin, Eric, Tuveson, David, Singh, Pankaj K (July 2021) Metabolic Rewiring by Loss of Sirt5 Promotes Kras-induced Pancreatic Cancer Progression. Gastroenterology. ISSN 0016-5085

Huang, C., Wang, P., Xie, Z., Wang, L., Zhong, Y. (July 2013) The differential requirement of mushroom body α/β subdivisions in long-term memory retrieval in Drosophila. Protein and Cell, 4 (7). pp. 512-519. ISSN 1674800X

Huang, C. , Zheng, X., Zhao, H., Li, M., Wang, P. , Xie, Z., Wang, L., Zhong, Y. (November 2012) A Permissive Role of Mushroom Body α/β Core Neurons in Long-Term Memory Consolidation in Drosophila. Current Biology, 22 (21). pp. 1981-1989. ISSN 0960-9822

Huang, T. H., Wu, A. T. H., Cheng, T. S., Lin, K. T., Lai, C. J., Hsieh, H. W., Chang, P. M., Wu, C. W., Huang, C. F., Chen, K. Y. (October 2019) In silico identification of thiostrepton as an inhibitor of cancer stem cell growth and an enhancer for chemotherapy in non-small-cell lung cancer. J Cell Mol Med. ISSN 1582-1838

Huang, T. H., Wu, A. T. H., Cheng, T. S., Lin, K. T., Lai, C. J., Hsieh, H. W., Chang, P. M. H., Wu, C. W., Huang, C. Y. F., Chen, K. Y. (December 2019) In silico identification of thiostrepton as an inhibitor of cancer stem cell growth and an enhancer for chemotherapy in non–small-cell lung cancer. Journal of Cellular and Molecular Medicine, 23 (12). pp. 8184-8195. ISSN 15821838 (ISSN)

Huang, Xiaozhen, Tang, Lingli, Yu, Yuan, Dalrymple, Justin, Lippman, Zachary B., Xu, Cao (May 2018) Control of flowering and inflorescence architecture in tomato by synergistic interactions between ALOG transcription factors. Journal of Genetics and Genomics, 45 (10). pp. 557-560. ISSN 1673-8527

Huang, Y. H., Klingbeil, O., He, X. Y., Wu, X. S., Arun, G., Lu, B., Somerville, T. D. D., Milazzo, J. P., Wilkinson, J. E., Demerdash, O. E., Spector, D. L., Egeblad, M., Shi, J., Vakoc, C. R. (July 2018) POU2F3 is a master regulator of a tuft cell-like variant of small cell lung cancer. Genes Dev, 32 (13-14). pp. 915-928. ISSN 0890-9369

Huang, Z. J., Paul, A. (June 2019) The diversity of GABAergic neurons and neural communication elements. Nat Rev Neurosci, 29 (9). pp. 563-572. ISSN 1471-003x

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Huber, D., Petreanu, L., Ghitani, N., Ranade, S., Hromadka, T., Mainen, Z., Svoboda, K. (January 2008) Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature, 451 (7174). pp. 61-4.

Hugel, S., Abegg, M., De Paola, V., Caroni, P., Gahwiler, B. H., McKinney, R. A. (March 2009) Dendritic Spine Morphology Determines Membrane-Associated Protein Exchange between Dendritic Shafts and Spine Heads. Cerebral Cortex, 19 (3). pp. 697-702. ISSN 1047-3211

Huilgol, Dhananjay, Levine, Jesse M, Galbavy, William, Wang, Bor-Shuen, He, Miao, Suryanarayana, Shreyas M, Huang, Z Josh (August 2023) Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex. Neuron, 111 (16). 2557-2569.e4. ISSN 0896-6273

Huilgol, Dhananjay, Russ, Jeffrey B, Srivas, Sweta, Huang, Z Josh (August 2023) The progenitor basis of cortical projection neuron diversity. Current Opinion in Neurobiology, 81. p. 102726. ISSN 0959-4388

Humpton, T. J., Alagesan, B., DeNicola, G. M., Lu, D., Yordanov, G. N., Leonhardt, C. S., Yao, M. A., Alagesan, P., Zaatari, M. N., Park, Y., Skepper, J. N., Macleod, K. F., Perez-Mancera, P. A., Murphy, M. P., Evan, G. I., Vousden, K. H., Tuveson, D. A. (July 2019) Oncogenic Kras induces Nix-mediated mitophagy to promote pancreatic cancer. Cancer Discov, 99 (9). pp. 1268-1298. ISSN 2159-8274

Huo, B. X., Zeater, N., Lin, M. K., Takahashi, Y. S., Hanada, M., Nagashima, J., Lee, B. C., Hata, J., Zaheer, A., Grunert, U., Miller, M. I., Rosa, M. G. P., Okano, H., Martin, P. R., Mitra, P. P. (July 2019) Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets. Eur J Neurosci. ISSN 0953-816x (Public Dataset)

Hwang, I., Cao, D., Na, Y., Kim, D. Y., Zhang, T., Yao, J., Oh, H., Hu, J., Zheng, H., Yao, Y., Paik, J. (March 2018) Far Upstream Element-Binding Protein 1 Regulates LSD1 Alternative Splicing to Promote Terminal Differentiation of Neural Progenitors. Stem Cell Reports, 10 (4). pp. 1208-1221. ISSN 2213-6711 (Electronic)2213-6711 (Linking)

I

Ibrahim, Leena Ali, Huang, Shuhan, Fernandez-Otero, Marian, Sherer, Mia, Qiu, Yanjie, Vemuri, Spurti, Xu, Qing, Machold, Robert, Pouchelon, Gabrielle, Rudy, Bernardo, Fishell, Gord (November 2021) Bottom-up inputs are required for establishment of top-down connectivity onto cortical layer 1 neurogliaform cells. Neuron, 109 (21). 3473-3485.e5. ISSN 0896-6273

Iijima-Ando, K., Hearn, S. A., Shenton, C., Gatt, A., Zhao, L., Iijima, K. (2009) Mitochondrial mislocalization underlies Ab42-induced neuronal dysfunction in a drosophila model of alzheimer's disease. PLoS ONE, 4 (12). pp. 1-13.

Iossifov, I., Rodriguez-Esteban, R., Mayzus, I., Millen, K. J., Rzhetsky, A. (November 2009) Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput Biol, 5 (11). e1000559.

Ipsaro, Jonathan J, Joshua-Tor, Leemor (February 2022) Developmental roles and molecular mechanisms of Asterix/GTSF1. Wiley Interdisciplinary Reviews: RNA. e1716. ISSN 1757-7004

J

James, Ranjit Immanuel, Verma, Richa, Johnson, Latif Rajesh, Manesh, Abi, Jayakumar, Jaikishan, Sen, Mousumi, Joseph, Jayaraj, Kumarasami, Ramdayalan, Mitra, Partha P, Sivaprakasam, Mohanasankar, Varghese, George M (July 2023) A Standardized Protocol for the Safe Retrieval of Infectious Postmortem Human Brain for Studying Whole-Brain Pathology. American Journal of Forensic Medicine and Pathology. ISSN 0195-7910

Janowitz, T. (July 2018) Cancer: The Tumor-Driven Disease of the Host. Cell Metab, 28 (1). pp. 5-6. ISSN 1550-4131

Javadzadeh, Mitra, Hofer, Sonja B (August 2022) Dynamic causal communication channels between neocortical areas. Neuron, 110 (15). 2470-2483.e7. ISSN 0896-6273

Jbara, Amina, Lin, Kuan-Ting, Stossel, Chani, Siegfried, Zahava, Shqerat, Haya, Amar-Schwartz, Adi, Elyada, Ela, Mogilevsky, Maxim, Raitses-Gurevich, Maria, Johnson, Jared L, Yaron, Tomer M, Ovadia, Ofek, Jang, Gun Ho, Danan-Gotthold, Miri, Cantley, Lewis C, Levanon, Erez Y, Gallinger, Steven, Krainer, Adrian R, Golan, Talia, Karni, Rotem (May 2023) RBFOX2 modulates a metastatic signature of alternative splicing in pancreatic cancer. Nature, 617 (7959). pp. 147-153. ISSN 0028-0836 (Public Dataset)

Je, B. I., Xu, F., Wu, Q., Liu, L., Meeley, R., Gallagher, J. P., Corcilius, L., Payne, R. J., Bartlett, M. E., Jackson, D. (March 2018) The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors. Elife, 7. ISSN 2050-084x

Jiao, Y., Lee, Y. K., Gladman, N., Chopra, R., Christensen, S. A., Regulski, M., Burow, G., Hayes, C., Burke, J., Ware, D., Xin, Z. (February 2018) MSD1 regulates pedicellate spikelet fertility in sorghum through the jasmonic acid pathway. Nat Commun, 9 (1). p. 822. ISSN 2041-1723

Jorstad, Nikolas L, Close, Jennie, Johansen, Nelson, Yanny, Anna Marie, Barkan, Eliza R, Travaglini, Kyle J, Bertagnolli, Darren, Campos, Jazmin, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Ding, Song-Lin, Gelfand, Emily, Goldy, Jeff, Hirschstein, Daniel, Kiick, Katelyn, Kroll, Matthew, Kunst, Michael, Lathia, Kanan, Long, Brian, Martin, Naomi, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Ruiz, Augustin, Shapovalova, Nadiya, Shehata, Soraya, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Callaway, Edward M, Hof, Patrick R, Keene, C Dirk, Levi, Boaz P, Linnarsson, Sten, Mitra, Partha P, Smith, Kimberly, Hodge, Rebecca D, Bakken, Trygve E, Lein, Ed S (October 2023) Transcriptomic cytoarchitecture reveals principles of human neocortex organization. Science, 382 (6667). eadf6812. ISSN 0036-8075

Jorstad, Nikolas L, Song, Janet HT, Exposito-Alonso, David, Suresh, Hamsini, Castro-Pacheco, Nathan, Krienen, Fenna M, Yanny, Anna Marie, Close, Jennie, Gelfand, Emily, Long, Brian, Seeman, Stephanie C, Travaglini, Kyle J, Basu, Soumyadeep, Beaudin, Marc, Bertagnolli, Darren, Crow, Megan, Ding, Song-Lin, Eggermont, Jeroen, Glandon, Alexandra, Goldy, Jeff, Kiick, Katelyn, Kroes, Thomas, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Siletti, Kimberly, Somasundaram, Saroja, Tieu, Michael, Torkelson, Amy, Feng, Guoping, Hopkins, William D, Höllt, Thomas, Keene, C Dirk, Linnarsson, Sten, McCarroll, Steven A, Lelieveldt, Boudewijn P, Sherwood, Chet C, Smith, Kimberly, Walsh, Christopher A, Dobin, Alexander, Gillis, Jesse, Lein, Ed S, Hodge, Rebecca D, Bakken, Trygve E (October 2023) Comparative transcriptomics reveals human-specific cortical features. Science, 382 (6667). eade9516. ISSN 0036-8075

Josselsohn, R. H., Tuveson, D. A. (September 2020) Pancreatic cancer SLUGged. J Exp Med, 217 (9). ISSN 0022-1007

Jr, Okobi Daniel E, Banerjee, Arkarup, Matheson, Andrew MM, Phelps, Steven M, Long, Michael A (March 2019) Motor cortical control of vocal interaction in neotropical singing mice. Science, 363 (6430). 983-+. ISSN 0036-8075

K

Kang, Min-Sung, Kim, Yong Jun, Heo, Jung, Rajendran, Sujeevan, Wang, Xingang, Bae, Jong Hyang, Lippman, Zachary, Park, Soon Ju (June 2022) Newly Discovered Alleles of the Tomato Antiflorigen Gene SELF PRUNING Provide a Range of Plant Compactness and Yield. International Journal of Molecular Sciences, 23 (13). p. 7149. ISSN 1661-6596

Karakaya, Eda, Oleinik, Natalia, Edwards, Jazlyn, Tomberlin, Jensen, Barker, Randy Bent, Berber, Burak, Ericsson, Maria, Alsudani, Habeeb, Ergul, Adviye, Beyaz, Semir, Lemasters, John J, Ogretmen, Besim, Albayram, Onder (February 2024) p17/C18-ceramide-mediated mitophagy is an endogenous neuroprotective response in preclinical and clinical brain injury. PNAS Nexus, 3 (2). ISSN 2752-6542

Karthik, Srinivasa, Joseph, Jayaraj, Jayakumar, Jaikishan, Manoj, Rahul, Shetty, Mahesh, Bota, Mihail, Verma, Richa, Mitra, Partha, Sivaprakasam, Mohanasankar (September 2023) Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain. Journal of Neuroscience Methods, 397. p. 109921. ISSN 0165-0270

Kastriti, M. E., Kameneva, P., Kamenev, D., Dyachuk, V., Furlan, A., Hampl, M., Memic, F., Marklund, U., Lallemend, F., Hadjab, S., Calvo-Enrique, L., Ernfors, P., Fried, K., Adameyko, I. (January 2019) Schwann Cell Precursors Generate the Majority of Chromaffin Cells in Zuckerkandl Organ and Some Sympathetic Neurons in Paraganglia. Frontiers in Molecular Neuroscience, 12. ISSN 1662-5099

Katt, W. P., Lukey, M. J., Cerione, R. A. (September 2019) Starving the Devourer: Cutting Cancer Off from Its Favorite Foods. Cell Chem Biol, 26 (9). pp. 1197-1199. ISSN 2451-9448

Kees, T., Egeblad, M. (July 2011) Innate Immune Cells in Breast Cancer - From Villains to Heroes? Journal of Mammary Gland Biology and Neoplasia, 16 (3). pp. 189-203. ISSN 1573-7039 (Electronic)1083-3021 (Linking)

Kepecs, A. (July 2019) Summary: Order and Disorder in Brains and Behavior. Cold Spring Harb Symp Quant Biol, 83. pp. 219-225. ISSN 0091-7451

Kepecs, A., Lisman, J. (February 2003) Information encoding and computation with spikes and bursts. Network, 14 (1). pp. 103-18. ISSN 0954-898X (Print)

Kepecs, A., Van Rossum, M. C. W., Song, S., Tegner, J. (2002) Spike-timing-dependent plasticity: Common themes and divergent vistas. Biological Cybernetics, 87 (5-6). pp. 446-458. ISSN 03401200 (ISSN)

Kerbel, R. S., Benezra, R., Lyden, D. C., Hattori, K., Heissig, B., Nolan, D. J., Mittal, V., Shaked, Y., Dias, S., Bertolini, F., Rafii, S. (August 2008) Endothelial progenitor cells are cellular hubs essential for neoangiogenesis of certain aggressive adenocarcinomas and metastatic transition but not adenomas. Proc Natl Acad Sci U S A, 105 (34). E54 .

Kerr, J. B., Hutt, K. J, Michalak, E. M., Cook, M., Vandenberg, C. J., Liew, S. H., Bouillet, P., Mills, A., Scott, C. L., Findlay, J. K., Strasser, A. (November 2012) DNA Damage-Induced Primordial Follicle Oocyte Apoptosis and Loss of Fertility Require TAp63-Mediated Induction of Puma and Noxa. Molecular Cell, 48 (3). pp. 343-352. ISSN 1097-2765

Kerschensteiner, D., Liu, H., Cheng, C. W., Demas, J., Cheng, S. H., Hui, C. c., Chow, R. L., Wong, R. O. L. (March 2008) Genetic Control of Circuit Function: Vsx1 and Irx5 Transcription Factors Regulate Contrast Adaptation in the Mouse Retina. J. Neurosci., 28 (10). pp. 2342-2352.

Kim, M., McCormick, S., Timmermans, M., Sinha, N. (July 2003) The expression domain of PHANTASTICA determines leaflet placement in compound leaves. Nature, 424 (6947). pp. 438-443. ISSN 0028-0836

Kim, S. B., Karre, S., Wu, Q., Park, M., Meyers, E., Claeys, H., Wisser, R., Jackson, D., Balint-Kurti, P. (August 2020) Multiple insertions of COIN, a novel maize Foldback transposable element, in the Conring gene cause a spontaneous progressive cell death phenotype. Plant J. ISSN 0960-7412

Kirberger, S. E., Ycas, P. D., Johnson, J. A., Chen, C., Ciccone, M. F., Woo, R. W. L., Urick, A. K., Zahid, H., Shi, K., Aihara, H., McAllister, S. D., Kashani-Sabet, M., Shi, J., Dickson, A., Dos Santos, C. O., Pomerantz, W. C. K. (February 2019) Selectivity, ligand deconstruction, and cellular activity analysis of a BPTF bromodomain inhibitor. Org Biomol Chem, 17 (2). pp. 2020-2027. ISSN 1477-0520

Kitagawa, Munenori, Tran, Thu M, Jackson, David (June 2023) Traveling with purpose: cell-to-cell transport of plant mRNAs. Trends in Cell Biology. S0962-8924(23)00106. ISSN 0962-8924

Kitagawa, M., Balkunde, R., Bui, H., Jackson, D. (August 2019) An Aminoacyl tRNA Synthetase, OKI1, Is Required for Proper Shoot Meristem Size in Arabidopsis. Plant Cell Physiol, 60 (11). pp. 2597-2608. ISSN 0032-0781

Kitagawa, Munenori, Wu, Peipei, Balkunde, Rachappa, Cunniff, Patrick, Jackson, David (January 2022) An RNA exosome subunit mediates cell-to-cell trafficking of a homeobox mRNA via plasmodesmata. Science, 375 (6577). pp. 177-182. ISSN 0036-8075

Kleeman, Sam O, Thakir, Tuba Mansoor, Demestichas, Breanna, Mourikis, Nicholas, Loiero, Dominik, Ferrer, Miriam, Bankier, Sean, Riazat-Kesh, Yosef JRA, Lee, Hassal, Chantzichristos, Dimitrios, Regan, Claire, Preall, Jonathan, Sinha, Sarthak, Rosin, Nicole, Yipp, Bryan, de Almeida, Luiz GN, Biernaskie, Jeff, Dufour, Antoine, Tober-Lau, Pinkus, Ruusalepp, Arno, Bjorkegren, Johan LM, Ralser, Markus, Kurth, Florian, Demichev, Vadim, Heywood, Todd, Gao, Qing, Johannsson, Gudmundur, Koelzer, Viktor H, Walker, Brian R, Meyer, Hannah V, Janowitz, Tobias (August 2023) Cystatin C is glucocorticoid responsive, directs recruitment of Trem2+ macrophages, and predicts failure of cancer immunotherapy. Cell Genomics, 3 (8). p. 100347. ISSN 2666-979X

Klein, Harry, Gallagher, Joseph, Demesa-Arevalo, Edgar, Abraham-Juárez, María Jazmín, Heeney, Michelle, Feil, Regina, Lunn, John E, Xiao, Yuguo, Chuck, George, Whipple, Clinton, Jackson, David, Bartlett, Madelaine (January 2022) Recruitment of an ancient branching program to suppress carpel development in maize flowers. Proceedings of the National Academy of Sciences of USA, 119 (2). e2115871119-e2115871119. ISSN 0027-8424

Kleinfeld, D., Luan, L., Mitra, P. P., Robinson, J. T., Sarpeshkar, R., Shepard, K., Xie, C., Harris, T. D. (August 2019) Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain? Neuron, 103 (6). pp. 1005-1015. ISSN 0896-6273

Knauer, S., Holt, A.L., Rubio-Somoza, I., Tucker, E. J., Hinze, A., Pisch, M., Javelle, M., Timmermans, M. C. P., Tucker, M. R., Laux, T. (January 2013) A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem. Developmental Cell. ISSN 15345807

Kneissig, M., Keuper, K., de Pagter, M. S., van Roosmalen, M. J., Martin, J., Otto, H., Passerini, V., Campos Sparr, A., Renkens, I., Kropveld, F., Vasudevan, A., Sheltzer, J. M., Kloosterman, W. P., Storchova, Z. (November 2019) Micronuclei-based model system reveals functional consequences of chromothripsis in human cells. Elife, 8. e50292. ISSN 2050-084x (Public Dataset)

Kneuss, E., Munafo, M., Eastwood, E. L., Deumer, U. S., Preall, J. B., Hannon, G. J., Czech, B. (August 2019) Specialization of the Drosophila nuclear export family protein Nxf3 for piRNA precursor export. Genes Dev, 33 (17-18). pp. 1208-1220. ISSN 0890-9369

Knobloch, H. S., Charlet, A., Hoffmann, L., Eliava, M., Khrulev, S., Cetin, A., Osten, P., Schwarz, M., Seeburg, P., Stoop, R., Grinevich, V. (February 2012) Evoked axonal oxytocin release in the central amygdala attenuates fear response. Neuron, 73 (3). pp. 553-566. ISSN 08966273 (ISSN)

Kopec, C. D., Bowers, A. C., Pai, S. , Brody, C. D. (March 2011) Semi-automated atlas-based analysis of brain histological sections. Journal of Neuroscience Methods, 196 (1). ISSN 0165-0270

Kopp, S. J., Banisadr, G., Glajch, K., Maurer, U. E., Grunewald, K., Miller, R. J., Osten, P., Spear, P. G. (October 2009) Infection of neurons and encephalitis after intracranial inoculation of herpes simplex virus requires the entry receptor nectin-1. Proceedings of the National Academy of Sciences of the United States of America, 106 (42). pp. 17916-20. ISSN 0027-8424

Koulakov, A. A., Rinberg, D. (October 2011) Sparse Incomplete Representations: A Potential Role of Olfactory Granule Cells. Neuron, 72 (1). pp. 124-136. ISSN 0896-6273

Krause, William C, Rodriguez, Ruben, Gegenhuber, Bruno, Matharu, Navneet, Rodriguez, Andreas N, Padilla-Roger, Adriana M, Toma, Kenichi, Herber, Candice B, Correa, Stephanie M, Duan, Xin, Ahituv, Nadav, Tollkuhn, Jessica, Ingraham, Holly A (October 2021) Oestrogen engages brain MC4R signalling to drive physical activity in female mice. Nature. ISSN 0028-0836

Kressel, A. M., Tsaava, T., Levine, Y. A., Chang, E. H., Addorisio, M. E., Chang, Q., Burbach, B. J., Carnevale, D., Lembo, G., Zador, A. M., Andersson, U., Pavlov, V. A., Chavan, S. S., Tracey, K. J. (November 2020) Identification of a brainstem locus that inhibits tumor necrosis factor. Proc Natl Acad Sci U S A, 117 (47). pp. 29803-29810. ISSN 0027-8424 (Print)0027-8424

Krizhanovsky, V., Xue, W., Zender, L., Yon, M., Hernando, E., Lowe, S. W. (2008) Implications of cellular senescence in tissue damage response, tumor suppression, and stem cell biology. Cold Spring Harb Symp Quant Biol, 73. pp. 513-22.

Krizhanovsky, V., Yon, M., Dickens, R. A., Hearn, S. A., Simon, J., Ma, B., Miething, C., Zender, L., Lowe, S. W. (August 2008) Senescence of activated stellate cells limits liver fibrosis. Cell, 134 (4). 657-667 .

Kwon, C. T., Heo, J., Lemmon, Z. H., Capua, Y., Hutton, S. F., Van Eck, J., Park, S. J., Lippman, Z. B. (December 2019) Rapid customization of Solanaceae fruit crops for urban agriculture. Nat Biotechnol, 38. pp. 182-188. ISSN 1087-0156

Kwon, Choon-Tak, Tang, Lingli, Wang, Xingang, Gentile, Iacopo, Hendelman, Anat, Robitaille, Gina, Van Eck, Joyce, Xu, Cao, Lippman, Zachary B (March 2022) Dynamic evolution of small signalling peptide compensation in plant stem cell control. Nature Plants. ISSN 2055-0278

L

La Manno, Gioele, Siletti, Kimberly, Furlan, Alessandro, Gyllborg, Daniel, Vinsland, Elin, Mossi Albiach, Alejandro, Mattsson Langseth, Christoffer, Khven, Irina, Lederer, Alex R, Dratva, Lisa M, Johnsson, Anna, Nilsson, Mats, Lönnerberg, Peter, Linnarsson, Sten (July 2021) Molecular architecture of the developing mouse brain. Nature. ISSN 0028-0836

Laguillo-Diego, Alejandra, Kiewisz, Robert, Martí-Gómez, Carlos, Baum, Daniel, Müller-Reichert, Thomas, Vernos, Isabelle (November 2022) MCRS1 modulates the heterogeneity of microtubule minus-end morphologies in mitotic spindles. Molecular Biology of the Cell. mbcE22080306T. ISSN 1059-1524

Lak, A., Okun, M., Moss, M. M., Gurnani, H., Farrell, K., Wells, M. J., Reddy, C. B., Kepecs, A., Harris, K. D., Carandini, M. (December 2019) Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value. Neuron. ISSN 0896-6273

Lanctot, Amy (September 2022) At home and away: A mobile transcription factor regulates meristem development in discrete spatial domains. Plant Physiology. kiac453. ISSN 0032-0889

Lanctot, Amy (February 2022) Branching out underground: brassinosteroid signaling promotes lateral root development in rice. Plant Physiology. ISSN 1532-2548

Langdon, Christopher, Genkin, Mikhail, Engel, Tatiana A (April 2023) A unifying perspective on neural manifolds and circuits for cognition. Nature Reviews Neuroscience. ISSN 1471-003X

Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Flowers, Katelyn, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (December 2023) The molecular cytoarchitecture of the adult mouse brain. Nature, 624 (7991). pp. 333-342. ISSN 0028-0836

Lassus, Patrice, Opitz-Araya, Ximena, Lazebnik, Yuri (2002) Requirement for caspase-2 in stress-induced apoptosis before mitochondrial permeabilization. Science, 297 (5585). pp. 1352-1354. ISSN 1095-9203

Laszlovszky, T, Schlingloff, D, Hegedüs, P, Freund, T. F., Gulyás, A., Kepecs, A., Hangya, B. (June 2020) Distinct Synchronization, Cortical Coupling and Behavioral Function of Two Basal Forebrain Cholinergic Neuron Types. Nature Neuroscience, 23 (8). pp. 992-1003. ISSN 1097-6256

Lau, B. Y. B., Krishnan, K., Huang, Z. J., Shea, S. D. (January 2020) Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires MECP2. J Neurosci, 40 (7). pp. 1514-1526. ISSN 0270-6474

Laubscher, Dominik, Gryder, Berkley E, Sunkel, Benjamin D, Andresson, Thorkell, Wachtel, Marco, Das, Sudipto, Roschitzki, Bernd, Wolski, Witold, Wu, Xiaoli S, Chou, Hsien-Chao, Song, Young K, Wang, Chaoyu, Wei, Jun S, Wang, Meng, Wen, Xinyu, Ngo, Quy Ai, Marques, Joana G, Vakoc, Christopher R, Schäfer, Beat W, Stanton, Benjamin Z, Khan, Javed (November 2021) BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma. Nature Communications, 12 (1). p. 6924. ISSN 2041-1723

Lazutkin, AA, Shuvaev, SA, Barykina, NV (January 2019) Click histochemistry for whole-mount staining of brain structures. MethodsX, 6. pp. 1986-1991. ISSN 2215-0161

Lee, Ser Yee, Goh, Brian KP, Sepideh, Gholami, Allen, John C, Merkow, Ryan P, Teo, Jin Yao, Chandra, Deepa, Koh, Ye Xin, Tan, Ek Khoon, Kam, Juinn Haur, Cheow, Peng Chung, Chow, Pierce KH, Ooi, London LPJ, Chung, Alexander YF, D'Angelica, Michael I, Jarnagin, William R, Peter Kingham, T, Chan, Chung Yip (March 2019) Laparoscopic Liver Resection Difficulty Score-a Validation Study. Journal of Gastrointestinal Surgery, 23 (3). pp. 545-555. ISSN 1091-255X

Lee, M. F., Trotman, L. C. (December 2019) PTEN: Bridging Endocytosis and Signaling. Cold Spring Harb Perspect Med. ISSN 2157-1422

Lee, S., Kruglikov, I., Huang, Z. J., Fishell, G., Rudy, B. (October 2013) A disinhibitory circuit mediates motor integration in the somatosensory cortex. Nature Neuroscience, 16. pp. 1662-1670. ISSN 10976256 (ISSN)

Lee, B.C., Lin, M.K., Fu, Y., Hata, J., Miller, M.I., Mitra, P. P. (May 2020) Multimodal Cross-registration and Quantification of Metric Distortions in Marmoset Whole Brain Histology using Diffeomorphic Mappings. J Comp Neurol. ISSN 0021-9967

Lenos, K. J., Lodestijn, S. C., Lyons, S. K., Bijlsma, M. F., Miedema, D. M., Vermeulen, L. (August 2019) A marker-independent lineage-tracing system to quantify clonal dynamics and stem cell functionality in cancer tissue. Nat Protoc, 14 (9). pp. 2648-2671. ISSN 1750-2799

Li, Zhen, Huang, Xiaoqian, Zhan, Huiqing, Zeng, Zhiqiang, Li, Caixia, Spitsbergen, Jan M, Meierjohann, Svenja, Schartl, Manfred, Gong, Zhiyuan (February 2012) Inducible and repressable oncogene-addicted hepatocellular carcinoma in Tet-on xmrk transgenic zebrafish. Journal of Hepatology, 56 (2). pp. 419-425. ISSN 0168-8278

Li, Zhen, Zheng, Weiling, Wang, Zhengyuan, Zeng, Zhiqiang, Zhan, Huiqing, Li, Caixia, Zhou, Li, Yan, Chuan, Spitsbergen, Jan M, Gong, Zhiyuan (March 2013) A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. DMM Disease Models and Mechanisms, 6 (2). pp. 414-423. ISSN 1754-8403

Li, F., Deng, Z., Zhang, L., Wu, C., Jin, Y., Hwang, I., Vladimirova, O., Xu, L., Yang, L., Lu, B., Dheekollu, J., Li, J. Y., Feng, H., Hu, J., Vakoc, C. R., Ying, H., Paik, J., Lieberman, P. M., Zheng, H. (August 2019) ATRX loss induces telomere dysfunction and necessitates induction of alternative lengthening of telomeres during human cell immortalization. Embo j, 38 (19). e96659. ISSN 0261-4189

Li, T., Huang, J., Jiang, Y., Zeng, Y., He, F., Zhang, M. Q., Han, Z., Zhang, X. (March 2009) Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development. Genomics, 93 (3). pp. 235-242.

Li, W., Cressy, M., Qin, H., Fulga, T., Van Vactor, D., Dubnau, J. (March 2013) MicroRNA-276a Functions in Ellipsoid Body and Mushroom Body Neurons for Naive and Conditioned Olfactory Avoidance in Drosophila. Journal of Neuroscience, 33 (13). pp. 5821-33. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Li, Shi-Bin, Borniger, Jeremy C, Yamaguchi, Hiroshi, Hédou, Julien, Gaudilliere, Brice, de Lecea, Luis (September 2020) Hypothalamic circuitry underlying stress-induced insomnia and peripheral immunosuppression. Science Advances, 6 (37). eabc2590-eabc2590. ISSN 2375-2548

Li, Xiang, Huang, Chun-Hao, Sánchez-Rivera, Francisco J, Kennedy, Margaret C, Tschaharganeh, Darjus F, Morris, John P, Montinaro, Antonella, O'Rourke, Kevin P, Banito, Ana, Wilkinson, John E, Chen, Chi-Chao, Ho, Yu-Jui, Dow, Lukas E, Tian, Sha, Luan, Wei, de Stanchina, Elisa, Zhang, Tinghu, Gray, Nathanael S, Walczak, Henning, Lowe, Scott W (April 2022) A preclinical platform for assessing antitumor effects and systemic toxicities of cancer drug targets. Proceedings of the National Academy of Sciences of USA, 119 (17). e2110557119. ISSN 0027-8424

Li, Zhengnian, Ishida, Ryosuke, Liu, Yan, Wang, Jinhua, Li, Yina, Gao, Yang, Jiang, Jie, Che, Jianwei, Sheltzer, Jason M, Robers, Matthew B, Zhang, Tinghu, Westover, Kenneth D, Nabet, Behnam, Gray, Nathanael S (May 2022) Synthesis and Structure-Activity relationships of cyclin-dependent kinase 11 inhibitors based on a diaminothiazole scaffold. European Journal of Medicinal Chemistry, 238. p. 114433. ISSN 0223-5234

Liang, D., McHugh, K. M., Brophy, P. D., Shaikh, N., Manak, J. R., Andrews, P., Hakker, I., Wang, Z., Schwaderer, A. L., Hains, D. S. (August 2019) DNA copy number variations in children with vesicoureteral reflux and urinary tract infections. PLoS One, 14 (8). e0220617. ISSN 1932-6203

Liao, S. C., Hsu, H. W., Chuang, K. L., Huang, Z. Y., Lin, K. T., Hsu, W. H., Chang, K. H., Huang, C. F., Su, C. L. (June 2019) Using the Pleiotropic Characteristics of Curcumin to Validate the Potential Application of a Novel Gene Expression Screening Platform. Nutrients, 11 (6). ISSN 2072-6643

Liao, S. C., Hsu, W. H., Huang, Z. Y., Chuang, K. L., Lin, K. T., Tseng, C. L., Tsai, T. H., Dao, A. H., Su, C. L., Huang, C. F. (December 2019) Bioactivity Evaluation of a Novel Formulated Curcumin. Nutrients, 11 (12). ISSN 2072-6643 (Public Dataset)

Lin, M. K., Takahashi, Y. S., Huo, B. X., Hanada, M., Nagashima, J., Hata, J., Tolpygo, A. S., Ram, K., Lee, B. C., Miller, M. I., Rosa, M. G., Sasaki, E., Iriki, A., Okano, H., Mitra, P. (February 2019) A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Elife, 8. ISSN 2050-084x

Lin, Guifang, He, Cheng, Zheng, Jun, Koo, Dal-Hoe, Le, Ha, Zheng, Huakun, Tamang, Tej Man, Lin, Jinguang, Liu, Yan, Zhao, Mingxia, Hao, Yangfan, McFraland, Frank, Wang, Bo, Qin, Yang, Tang, Haibao, McCarty, Donald R, Wei, Hairong, Cho, Myeong-Je, Park, Sunghun, Kaeppler, Heidi, Kaeppler, Shawn M, Liu, Yunjun, Springer, Nathan, Schnable, Patrick S, Wang, Guoying, White, Frank F, Liu, Sanzhen (June 2021) Chromosome-level genome assembly of a regenerable maize inbred line A188. Genome biology, 22 (1). p. 175. ISSN 1474-760X

Lin, Xun, Gaudino, Stephen J, Jang, Kyung Ku, Bahadur, Tej, Singh, Ankita, Banerjee, Anirban, Beaupre, Michael, Chu, Timothy, Wong, Hoi Tong, Kim, Chang-Kyung, Kempen, Cody, Axelrad, Jordan, Huang, Huakang, Khalid, Saba, Shah, Vyom, Eskiocak, Onur, Parks, Olivia B, Berisha, Artan, McAleer, Jeremy P, Good, Misty, Hoshino, Miko, Blumberg, Richard, Bialkowska, Agnieszka B, Gaffen, Sarah L, Kolls, Jay K, Yang, Vincent W, Beyaz, Semir, Cadwell, Ken, Kumar, Pawan (January 2022) IL-17RA-signaling in Lgr5+ intestinal stem cells induces expression of transcription factor ATOH1 to promote secretory cell lineage commitment. Immunity. ISSN 1074-7613

Lindemann, R., Newbold, A., Whitecross, K., Cluse, L., Frew, A., Ellis, L., Williams, S., Wiegmans, A., Dear, A., Scott, C., Pelligrini, M., Wei, A., Richon, V., Marks, P., Lowe, S. W., Smyth, M., Johnstone, R. (February 2008) Defining the apoptotic pathways underlying HDAC inhibitor-mediated tumor therapy in vivo. Onkologie, 31 (Suppl.). pp. 69-70. ISSN 0378-584X

Lindsay, Penelope, Swentowsky, Kyle W, Jackson, David (December 2023) Cultivating Potential: Harnessing Plant Stem Cells for Agricultural Crop Improvement. Molecular Plant. ISSN 1674-2052

Lippman, Z. B., Cohen, O., Alvarez, J. P., Abu-Abied, M., Pekker, I., Paran, I., Eshed, Y., Zamir, D. (November 2008) The Making of a Compound Inflorescence in Tomato and Related Nightshades. PLoS Biology, 6 (11). e288.

Liu, Hao, Caballero-Florán, René N, Hergenreder, Ty, Yang, Tao, Hull, Jacob M, Pan, Geng, Li, Ruonan, Veling, Macy W, Isom, Lori L, Kwan, Kenneth Y, Huang, Z Josh, Fuerst, Peter G, Jenkins, Paul M, Ye, Bing (April 2023) DSCAM gene triplication causes excessive GABAergic synapses in the neocortex in Down syndrome mouse models. PLoS Biology, 21 (4). e3002078. ISSN 1544-9173

Liu, P. H., Shah, R. B., Li, Y., Arora, A., Ung, P. M., Raman, R., Gorbatenko, A., Kozono, S., Zhou, X. Z., Brechin, V., Barbaro, J. M., Thompson, R., White, R. M., Aguirre-Ghiso, J. A., Heymach, J. V., Lu, K. P., Silva, J. M., Panageas, K. S., Schlessinger, A., Maki, R. G., Skinner, H. D., de Stanchina, E., Sidi, S. (January 2019) An IRAK1-PIN1 signalling axis drives intrinsic tumour resistance to radiation therapy. Nat Cell Biol, 21 (2). pp. 203-213. ISSN 1465-7392

Liu, L, Lindsay, PL, Jackson, D (May 2021) Next generation cereal crop yield enhancement: From knowledge of inflorescence development to practical engineering by genome editing. International Journal of Molecular Sciences, 22 (10). p. 5167. ISSN 1661-6596

Liu, Lei, Gallagher, Joseph, Arevalo, Edgar Demesa, Chen, Richelle, Skopelitis, Tara, Wu, Qingyu, Bartlett, Madelaine, Jackson, David (March 2021) Enhancing grain-yield-related traits by CRISPR-Cas9 promoter editing of maize CLE genes. Nature Plants, 7 (3). pp. 287-294. ISSN 2055-026X

Liu, Songlei, Punthambaker, Sukanya, Iyer, Eswar PR, Ferrante, Thomas, Goodwin, Daniel, Fürth, Daniel, Pawlowski, Andrew C, Jindal, Kunal, Tam, Jenny M, Mifflin, Lauren, Alon, Shahar, Sinha, Anubhav, Wassie, Asmamaw T, Chen, Fei, Cheng, Anne, Willocq, Valerie, Meyer, Katharina, Ling, King-Hwa, Camplisson, Conor K, Kohman, Richie E, Aach, John, Lee, Je Hyuk, Yankner, Bruce A, Boyden, Edward S, Church, George M (March 2021) Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. ISSN 0305-1048

Liu, Y., Li, M., Zhang, X., Lu, Y., Gong, H., Yin, J., Chen, Z., Qian, L., Yang, Y., Andolina, I. M., Shipp, S., McLoughlin, N., Tang, S., Wang, W. (August 2020) Hierarchical Representation for Chromatic Processing across Macaque V1, V2, and V4. Neuron, 108 (3). pp. 538-550. ISSN 0896-6273

Lobo, Anandi, Mishra, Sourav K, Jha, Shilpy, Tiwari, Ankit, Kapoor, Rahul, Sharma, Shivani, Kaushal, Seema, Kiranmai, N Sri, Das, M Rakshitha, Peddinti, Kamal P, Sharma, Shailendra K, Bhardwaj, Nitin, Arora, Samriti, Jain, Deepika, Jain, Ekta, Munjal, Gauri, Shinde, Sayali, Malik, Vipra, Singh, Hena, Varshney, Juhi, Pradhan, Dinesh, Dixit, Mallika, Pattnaik, Niharika, Sharma, Ashish K, Barapatre, Yogesh R, Pradhan, Manas, Satapathy, Kaliprasad, Rath, Debadarshi, Jaiswal, Sunil, Das, Stithi, Khadenga, Chiraranjan, Routa, Sudhasmita, Baisakh, Manas R, Tiwari, Romila, Sampat, Nakul Y, Chakrabarti, Indranil, Parwani, Anil V, Mohanty, Sambit K (January 2024) Evaluation of programmed cell death ligand 1 expression in a contemporary cohort of penile squamous cell carcinoma and its correlation with clinicopathologic and survival parameters: A study of 134 patients. American Journal of Clinical Pathology. aqad107. ISSN 0002-9173

Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (February 2020) ZEBrA - Zebra finch Expression Brain Atlas: a resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol. ISSN 0021-9967 (Public Dataset)

Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (August 2020) ZEBrA: Zebra finch Expression Brain Atlas-A resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol, 528 (12). pp. 2099-2131. ISSN 0021-9967

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (July 2021) Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain. PLoS Biology, 19 (7). e3001341. ISSN 1545-7885

Lukey, M. J., Cluntun, A. A., Katt, W. P., Lin, M. J., Druso, J. E., Ramachandran, S., Erickson, J. W., Le, H. H., Wang, Z. E., Blank, B., Greene, K. S., Cerione, R. A. (October 2019) Liver-Type Glutaminase GLS2 Is a Druggable Metabolic Node in Luminal-Subtype Breast Cancer. Cell Rep, 29 (1). 76-88 e7. ISSN 2211-1247

Lukey, M. J., Greene, K.S., Cerione, R.A. (March 2020) Lysine succinylation and SIRT5 couple nutritional status to glutamine catabolism. Mol Cell Oncol, 7 (3). p. 1735284. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Lukow, Devon A, Sausville, Erin L, Suri, Pavit, Chunduri, Narendra Kumar, Wieland, Angela, Leu, Justin, Smith, Joan C, Girish, Vishruth, Kumar, Ankith A, Kendall, Jude, Wang, Zihua, Storchova, Zuzana, Sheltzer, Jason M (August 2021) Chromosomal instability accelerates the evolution of resistance to anti-cancer therapies. Developmental Cell. ISSN 1534-5807

Luo, Y., Yang, Y., Liu, M., Wang, D., Wang, F., Bi, Y., Ji, J., Li, S., Liu, Y., Chen, R., Huang, H., Wang, X., Swidnicka-Siergiejko, A. K., Janowitz, T., Beyaz, S., Wang, G., Xu, S., Bialkowska, A. B., Luo, C. K., Pin, C. L., Liang, G., Lu, X., Wu, M., Shroyer, K. R., Wolff, R. A., Plunkett, W., Ji, B., Li, Z., Li, E., Li, X., Yang, V. W., Logsdon, C. D., Abbruzzese, J. L., Lu, W. (July 2019) Oncogenic KRAS Reduces Expression of FGF21 in Acinar Cells to Promote Pancreatic Tumorigenesis in Mice on a High-Fat Diet. Gastroenterology, 157 (5). ISSN 0016-5085

Luo, Pei X, Zakharenkov, Hannah Cortez, Torres, Lisette Y, Rios, Roberto A, Gegenhuber, Bruno, Black, Alexis M, Xu, Christine K, Minie, Vanessa A, Tran, Amy M, Tollkuhn, Jessica, Trainor, Brian C (May 2022) Oxytocin receptor behavioral effects and cell types in the bed nucleus of the stria terminalis. Hormones and Behaviour, 143. p. 105203. ISSN 0018-506X

Ly, M., Rentas, S., Vujovic, A., Wong, N., Moreira, S., Xu, J., Holzapfel, N., Bhatia, S., Tran, D., Minden, M. D., Draper, J. S., Hope, K. J. (September 2019) Diminished AHR signaling drives human acute myeloid leukemia stem cell maintenance. Cancer Res. ISSN 0008-5472

M

Ma, Wai Kit, Voss, Dillon M, Scharner, Juergen, Costa, Ana SH, Lin, Kuang-Ting, Jeon, Hyun Yong, Wilkinson, John E, Jackson, Michaela, Rigo, Frank, Bennett, C Frank, Krainer, Adrian R (December 2021) ASO-based PKM splice-switching therapy inhibits hepatocellular carcinoma growth. Cancer Research. canres.0948.2020-canres.0948.2020. ISSN 0008-5472

Machens, C. K., Brody, C. D. (February 2008) Design of continuous attractor networks with monotonic tuning using a symmetry principle. Neural Comput, 20 (2). pp. 452-85.

Maihofer, Adam X, Engchuan, Worrawat, Huguet, Guillaume, Klein, Marieke, MacDonald, Jeffrey R, Shanta, Omar, Thiruvahindrapuram, Bhooma, Jean-Louis, Martineau, Saci, Zohra, Jacquemont, Sebastien, Scherer, Stephen W, Ketema, Elizabeth, Aiello, Allison E, Amstadter, Ananda B, Avdibegović, Esmina, Babic, Dragan, Baker, Dewleen G, Bisson, Jonathan I, Boks, Marco P, Bolger, Elizabeth A, Bryant, Richard A, Bustamante, Angela C, Caldas-de-Almeida, Jose Miguel, Cardoso, Graça, Deckert, Jurgen, Delahanty, Douglas L, Domschke, Katharina, Dunlop, Boadie W, Dzubur-Kulenovic, Alma, Evans, Alexandra, Feeny, Norah C, Franz, Carol E, Gautam, Aarti, Geuze, Elbert, Goci, Aferdita, Hammamieh, Rasha, Jakovljevic, Miro, Jett, Marti, Jones, Ian, Kaufman, Milissa L, Kessler, Ronald C, King, Anthony P, Kremen, William S, Lawford, Bruce R, Lebois, Lauren AM, Lewis, Catrin, Liberzon, Israel, Linnstaedt, Sarah D, Lugonja, Bozo, Luykx, Jurjen J, Lyons, Michael J, Mavissakalian, Matig R, McLaughlin, Katie A, McLean, Samuel A, Mehta, Divya, Mellor, Rebecca, Morris, Charles Phillip, Muhie, Seid, Orcutt, Holly K, Peverill, Matthew, Ratanatharathorn, Andrew, Risbrough, Victoria B, Rizzo, Albert, Roberts, Andrea L, Rothbaum, Alex O, Rothbaum, Barbara O, Roy-Byrne, Peter, Ruggiero, Kenneth J, Rutten, Bart PF, Schijven, Dick, Seng, Julia S, Sheerin, Christina M, Sorenson, Michael A, Teicher, Martin H, Uddin, Monica, Ursano, Robert J, Vinkers, Christiaan H, Voisey, Joanne, Weber, Heike, Winternitz, Sherry, Xavier, Miguel, Yang, Ruoting, McD Young, Ross, Zoellner, Lori A, Psychiatric Genomics Consortium PTSD Working Group, Psychiatric Genomics Consortium CNV Working Group, Salem, Rany M, Shaffer, Richard A, Wu, Tianying, Ressler, Kerry J, Stein, Murray B, Koenen, Karestan C, Sebat, Jonathan, Nievergelt, Caroline M (September 2022) Rare copy number variation in posttraumatic stress disorder. Molecular Psychiatry. ISSN 1359-4184

Mainen, Z. F., Kepecs, A. (February 2009) Neural representation of behavioral outcomes in the orbitofrontal cortex. Current Opinion in Neurobiology, 19 (1). pp. 84-91.

Maiorino, L., Egeblad, M. (August 2019) Tumours pick the path to cancer inflammation. Nat Cell Biol, 21 (9). pp. 1055-1057. ISSN 1465-7392

Majdandzic, Antonio, Rajesh, Chandana, Koo, Peter K (May 2023) Correcting gradient-based interpretations of deep neural networks for genomics. Genome Biology, 24 (1). p. 109. ISSN 1474-760X

Majka, P., Bai, S., Bakola, S., Bednarek, S., Chan, J. M., Jermakow, N., Passarelli, L., Reser, D. H., Theodoni, P., Worthy, K. H., Wang, X. J., Wojcik, D. K., Mitra, P. P., Rosa, M. G. P. (February 2020) Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nat Commun, 11 (1). p. 1133. ISSN 2041-1723 (Public Dataset)

Makino, H., Malinow, R. (November 2009) AMPA Receptor Incorporation into Synapses during LTP: The Role of Lateral Movement and Exocytosis. Neuron, 64 (3). pp. 381-390. ISSN 0896-6273

Makino, H., Malinow, R. (2011) Compartmentalized versus global synaptic plasticity on dendrites controlled by experience. Neuron, 72 (6). pp. 1001-1011. ISSN 08966273 (ISSN)

Maletic-Savatic, M., Vingara, L. K., Manganas, L. N., Li, Y., Zhang, S., Sierra, A., Hazel, R., Smith, D., Wagshul, M. E., Henn, F., Krupp, L., Enikolopov, G., Benveniste, H., Djuric, P. M., Pelczer, I. (2008) Metabolomics of neural progenitor cells: a novel approach to biomarker discovery. Cold Spring Harb Symp Quant Biol, 73. pp. 389-401. ISSN 1943-4456 (Electronic)0091-7451 (Linking)

Maletic-Savatic, M., Koothan, T., Malinow, R. (September 1998) Calcium-evoked dendritic exocytosis in cultured hippocampal neurons. Part II: mediation by calcium/calmodulin-dependent protein kinase II. Journal of Neuroscience, 18 (17). pp. 6814-21. ISSN 0270-6474

Malinow, R. (1998) Silent synapses in three forms of central plasticity. In: Central synapses: quantal mechanisms and plasticity. HFSP Workshop IV, HFSP W . Human Frontier Science Program, Strasbourg, France. ISBN 9789291640034

Mandelbaum, G., Taranda, J., Haynes, T. M., Hochbaum, D. R., Huang, K. W., Hyun, M., Umadevi Venkataraju, K., Straub, C., Wang, W., Robertson, K., Osten, P., Sabatini, B. L. (March 2019) Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus. Neuron, 102 (3). 636-652 e.. ISSN 0896-6273

Mao, T., O'Connor, D. H., Scheuss, V., Nakai, J., Svoboda, K. (March 2008) Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. PLoS ONE, 3 (3). e1796.

Masset, P., Ott, T., Lak, A., Hirokawa, J., Kepecs, A. (June 2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182. ISSN 0092-8674

Matsukawa, Toshihiro, Yin, Mianmian, Baslan, Timour, Chung, Yang Jo, Cao, Dengchao, Bertoli, Ryan, Zhu, Yuelin J, Walker, Robert L, Freeland, Amy, Knudsen, Erik, Lowe, Scott W, Meltzer, Paul S, Aplan, Peter D (September 2022) Mcm2 hypomorph leads to acute leukemia or hematopoietic stem cell failure, dependent on genetic context. The FASEB Journal, 36 (9). e22430. ISSN 0892-6638

Mattick, John S, Amaral, Paulo P, Carninci, Piero, Carpenter, Susan, Chang, Howard Y, Chen, Ling-Ling, Chen, Runsheng, Dean, Caroline, Dinger, Marcel E, Fitzgerald, Katherine A, Gingeras, Thomas R, Guttman, Mitchell, Hirose, Tetsuro, Huarte, Maite, Johnson, Rory, Kanduri, Chandrasekhar, Kapranov, Philipp, Lawrence, Jeanne B, Lee, Jeannie T, Mendell, Joshua T, Mercer, Timothy R, Moore, Kathryn J, Nakagawa, Shinichi, Rinn, John L, Spector, David L, Ulitsky, Igor, Wan, Yue, Wilusz, Jeremy E, Wu, Mian (January 2023) Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews Molecular Cell Biology. ISSN 1471-0072

McGinty, V. B., Hayden, B. Y., Heilbronner, S. R., Dumont, E. C., Graves, S. M., Mirrione, M. M., Hoffman, J. d., Sartor, G. C., España, R. A., Millan, E. Z., DiFeliceantonio, A. G., Marchant, N. J., Napier, T. C., Root, D. H., Borgland, S. L., Treadway, M. T., Floresco, S. B., McGinty, J. F., Haber, S. N. (2011) Emerging, Reemerging, and Forgotten Brain Areas of the Reward Circuit: Notes from the 2010 Motivational and Neural Networks Conference. Behavioural Brain Research, 225 (1). pp. 348-357. ISSN 0166-4328

Medwig-Kinney, Taylor N, Kinney, Brian A, Martinez, Michael AQ, Yee, Callista, Sirota, Sydney S, Mullarkey, Angelina A, Somineni, Neha, Hippler, Justin, Zhang, Wan, Shen, Kang, Hammell, Christopher, Pani, Ariel M, Matus, David Q (December 2023) Dynamic compartmentalization of the pro-invasive transcription factor NHR-67 reveals a role for Groucho in regulating a proliferative-invasive cellular switch in C. elegans. eLife, 12. RP84355. ISSN 2050-084X

Metz, Charles William, Moses, Mildred S. (December 1928) Observations on sex-ratio determination in Sciara (Diptera). Proceedings of the National Academy of Sciences, 14 (12). pp. 930-932.

Michael, Todd P, Ernst, Evan, Hartwick, Nolan, Chu, Philomena, Bryant, Douglas, Gilbert, Sarah, Ortleb, Stefan, Baggs, Erin L, Sree, K Sowjanya, Appenroth, Klaus J, Fuchs, Joerg, Jupe, Florian, Sandoval, Justin P, Krasileva, Ksenia V, Borisjuk, Ljudmylla, Mockler, Todd C, Ecker, Joseph R, Martienssen, Robert A, Lam, Eric (December 2020) Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Research, 31 (2). pp. 225-238. ISSN 1088-9051

Middleton, EA, He, X.-Y., Denorme, F, Campbell, RA, Ng, D., Salvatore, S., Mostyka, M, Baxter-Stoltzfus, A., Borczuk, A., Loda, M., Cody, MJ, Manne, BK, Portier, I, Harris, E, Petrey, AC, Beswick, EJ, Caulin, AF, Iovino, A, Abegglen, LM, Weyrich, AS, Rondina, MT, Egeblad, M., Schiffman, JD, Con Yost, C (June 2020) Neutrophil Extracellular Traps (NETs) Contribute to Immunothrombosis in COVID-19 Acute Respiratory Distress Syndrome. Blood. ISSN 0006-4971

Mikhailik, Anatoly, Michurina, Tatyana V, Dikranian, Krikor, Hearn, Stephen, Maxakov, Vladimir I, Siller, Saul S, Takemaru, Ken-Ichi, Enikolopov, Grigori, Peunova, Natalia (May 2021) nNOS regulates ciliated cell polarity, ciliary beat frequency, and directional flow in mouse trachea. Life science alliance, 4 (5). ISSN 2575-1077

Miller, C. T., Hale, M. E., Okano, H., Okabe, S., Mitra, P. (February 2019) Comparative Principles for Next-Generation Neuroscience. Frontiers in Behavioral Neuroscience, 13. ISSN 1662-5153

Mineyeva, Olga A, Barykina, Natalia V, Bezriadnov, Dmitry V, Latushkin, Sergey T, Ryazanov, Alexander I, Unezhev, Vitaliy N, Shuvaev, Sergey A, Usova, Svetlana V, Lazutkin, Alexander A (May 2019) Suppressed neurogenesis without cognitive deficits: effects of fast neutron irradiation in mice. NeuroReport, 30 (8). pp. 538-543. ISSN 0959-4965

Mirabelli, C. K., Nusse, R., Tuveson, D. A., Williams, B. O. (July 2019) Perspectives on the role of Wnt biology in cancer. Sci Signal, 12 (589). ISSN 1945-0877

Miraucourt, L. S., da Silva, J. S., Burgos, K., Li, J., Abe, H., Ruthazer, E. S., Cline, H. T. (January 2012) GABA expression and regulation by sensory experience in the developing visual system. PLoS ONE, 7 (1). ISSN 19326203 (ISSN)

Mirrione, M. M., Li, B., Henn, F. A. (May 2011) Lateral Habenula Circuit Activity Following High Frequency Deep Brain Stimulation. Biological Psychiatry, 69 (9). 127S-128S. ISSN 0006-3223

Mishra, Sushanta Kumar, Millman, Scott Evan, Zhang, Lingbo (December 2022) Metabolism in acute myeloid leukemia: mechanistic insights and therapeutic targets. Blood. ISSN 0006-4971

Miura, K., Mainen, Z. F., Uchida, N. (June 2012) Odor Representations in Olfactory Cortex: Distributed Rate Coding and Decorrelated Population Activity. Neuron, 74 (6). pp. 1087-1098. ISSN 0896-6273

Mo, Yan, Duan, Shoufu, Zhang, Xu, Hua, Xu, Zhou, Hui, Wei, Hong-Jian, Watanabe, Jun, McQuillan, Nicholas, Su, Zhenyi, Gu, Wei, Wu, Cheng-Chia, Vakoc, Christopher R, Hashizume, Rintaro, Chang, Kenneth, Zhang, Zhiguo (October 2022) Epigenome programing by H3.3K27M mutation creates a dependence of pediatric glioma on SMARCA4. Cancer Discovery. CD-21. ISSN 2159-8274

Mohan, Hemanth, An, Xu, Xu, X Hermione, Kondo, Hideki, Zhao, Shengli, Matho, Katherine S, Wang, Bor-Shuen, Musall, Simon, Mitra, Partha, Huang, Z Josh (January 2023) Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks. Nature Neuroscience. ISSN 1097-6256

Mohanasundaram, Boominathan, Palit, Shirsa, Bhide, Amey J, Pala, Madhusmita, Rajoria, Kanishka, Girigosavi, Payal, Banerjee, Anjan K (February 2024) PpSCARECROW1 (PpSCR1) regulates leaf blade and mid-vein development in Physcomitrium patens. Plant Molecular Biology, 114 (1). ISSN 0167-4412 (Public Dataset)

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A., Lipson, M. (February 2020) Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation. Nat Biomed Eng, 4 (2). pp. 223-231. ISSN 2157-846x (Public Dataset)

Moral, J.A., Leung, J., Rojas, L.A., Ruan, J., Zhao, J., Sethna, Z., Ramnarain, A., Gasmi, B., Gururajan, M., Redmond, D., Askan, G., Bhanot, U., Elyada, E., Park, Y., Tuveson, D. A., Gonen, M., Leach, S.D., Wolchok, J.D., DeMatteo, R. P., Merghoub, T., Balachandran, V. P. (February 2020) ILC2s Amplify PD-1 Blockade by Activating Tissue-Specific Cancer Immunity. Nature, 579 (7797). pp. 130-135. ISSN 0028-0836 (Public Dataset)

Moses, Mildred S., Metz, Charles W. (December 1928) Evidence that the female is responsible for the sex ratio in Sciara (Diptera). Proceedings of the National Academy of Sciences, 14 (12). pp. 928-930.

Mousset, Alexandra, Lecorgne, Enora, Bourget, Isabelle, Lopez, Pascal, Jenovai, Kitti, Cherfils-Vicini, Julien, Dominici, Chloé, Rios, Géraldine, Girard-Riboulleau, Cédric, Liu, Bodu, Spector, David L, Ehmsen, Sidse, Renault, Shufang, Hego, Caroline, Mechta-Grigoriou, Fatima, Bidard, François-Clément, Terp, Mikkel Green, Egeblad, Mikala, Gaggioli, Cédric, Albrengues, Jean (April 2023) Neutrophil extracellular traps formed during chemotherapy confer treatment resistance via TGF-β activation. Cancer Cell, 41 (4). 757-775.e10. ISSN 1535-6108 (Public Dataset)

Muller, D., Hida, B., Guidone, G., Speth, R. C., Michurina, T. V., Enikolopov, G. N., Middendorff, R. (October 2009) Expression of Guanylyl Cyclase (GC)-A and GC-B during Brain Development: Evidence for a Role of GC-B in Perinatal Neurogenesis. Endocrinology, 150 (12). pp. 5520-5529. ISSN 0013-7227

Munir, Hafsa, Jones, James O, Janowitz, Tobias, Hoffmann, Markus, Euler, Maximilien, Martins, Carla P, Welsh, Sarah J, Shields, Jacqueline D (January 2021) Stromal-driven and Amyloid β-dependent induction of neutrophil extracellular traps modulates tumor growth. Nature Communications, 12 (1). p. 683. ISSN 2041-1723

Murn, J., Alibert, O., Wu, N., Tendil, S., Gidrol, X. (December 2008) Prostaglandin E2 regulates B cell proliferation through a candidate tumor suppressor, Ptger4. J Exp Med, 205 (13). pp. 3091-103.

Murn, J., Mlinaric-Rascan, I., Vaigot, P., Alibert, O., Frouin, V., Gidrol, X. (July 2009) A Myc-regulated transcriptional network controls B-cell fate in response to BCR triggering. BMC Genomics, 10. p. 323.

Murthy, M., Turner, G. (2013) Dissection of the head cuticle and sheath of living flies for whole-cell patch-clamp recordings in the brain. Cold Spring Harbor Protocols, 8 (2). pp. 134-139. ISSN 19403402 (ISSN)

Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S., Churchland, A. K. (October 2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22 (10). pp. 1677-1686. ISSN 1097-6256

Musall, Simon, Sun, Xiaonan R, Mohan, Hemanth, An, Xu, Gluf, Steven, Li, Shu-Jing, Drewes, Rhonda, Cravo, Emma, Lenzi, Irene, Yin, Chaoqun, Kampa, Björn M, Churchland, Anne K (January 2023) Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making. Nature Neuroscience. ISSN 1097-6256

Muthuswamy, S. K. (2011) 3D culture reveals a signaling network. Breast Cancer Research, 13 (1). ISSN 1465-542X

Myat, M. M., Louis, D., Mavrommatis, A., Collins, L., Mattis, J., Ledru, M., Verghese, S., Su, T. T. (May 2019) Regulators of cell movement during development and regeneration in Drosophila. Open Biol, 9 (5). p. 180245. ISSN 2046-2441

N

Nadif Kasri, N., Govek, E. E., Van Aelst, L. (March 2008) Characterization of Oligophrenin -1, a RhoGAP Lost in Patients Affected with Mental Retardation: Lentiviral Injection in Organotypic Brain Slice Cultures. Methods Enzymol, 439. pp. 255-266.

Nadif Kasri, N., Nakano-Kobayashi, A., Malinow, R., Li, B., Van Aelst, L. (June 2009) The Rho-linked mental retardation protein oligophrenin-1 controls synapse maturation and plasticity by stabilizing AMPA receptors. Genes Dev, 23 (11). pp. 1289-1302. ISSN 0890-9369

Naish, Matthew, Alonge, Michael, Wlodzimierz, Piotr, Tock, Andrew J, Abramson, Bradley W, Schmücker, Anna, Mandáková, Terezie, Jamge, Bhagyshree, Lambing, Christophe, Kuo, Pallas, Yelina, Natasha, Hartwick, Nolan, Colt, Kelly, Smith, Lisa M, Ton, Jurriaan, Kakutani, Tetsuji, Martienssen, Robert A, Schneeberger, Korbinian, Lysak, Martin A, Berger, Frédéric, Bousios, Alexandros, Michael, Todd P, Schatz, Michael C, Henderson, Ian R (November 2021) The genetic and epigenetic landscape of the Arabidopsis centromeres. Science, 374 (6569). eabi7489. ISSN 0036-8075

Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P., Churchland, A. K. (October 2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105 (1). pp. 165-179. ISSN 0896-6273 (Public Dataset)

Nakano-Kobayashi, A., Nadif Kasri, N., Newey, S. E., Van Aelst, L. (July 2009) The Rho-Linked Mental Retardation Protein OPHN1 Controls Synaptic Vesicle Endocytosis via Endophilin A1. Curr Biol, 19 (13). 1133-1139 .

Narasimhan, Arun, Venkataraju, Kannan Umadevi, Mizrachi, Judith, Albeanu, Dinu F, Osten, Pavel (April 2017) Oblique light-sheet tomography: fast and high resolution volumetric imaging of mouse brains. bioRxiv. (Submitted)

Nayar, Saba, Campos, Joana, Smith, Charlotte G, Iannizzotto, Valentina, Gardner, David H, Mourcin, Frédéric, Roulois, David, Turner, Jason, Sylvestre, Marvin, Asam, Saba, Glaysher, Bridget, Bowman, Simon J, Fearon, Douglas T, Filer, Andrew, Tarte, Karin, Luther, Sanjiv A, Fisher, Benjamin A, Buckley, Christopher D, Coles, Mark C, Barone, Francesca (July 2019) Immunofibroblasts are pivotal drivers of tertiary lymphoid structure formation and local pathology. Proceedings of the National Academy of Sciences of USA, 116 (27). pp. 13490-13497. ISSN 0027-8424

Nemec, P., Osten, P. (January 2020) The evolution of brain structure captured in stereotyped cell count and cell type distributions. Curr Opin Neurobiol, 60. pp. 176-183. ISSN 0959-4388

Nie, Shujun, Wang, Bo, Ding, Haiping, Lin, Haijian, Zhang, Li, Li, Qigui, Wang, Yujiao, Zhang, Bin, Liang, Anping, Zheng, Qi, Wang, Hui, Lv, Huayang, Zhu, Kun, Jia, Minghui, Wang, Xiaotong, Du, Jiyuan, Zhao, Runtai, Jiang, Zhenzhen, Xia, Caina, Qiao, Zhenghao, Li, Xiaohu, Liu, Boyan, Zhu, Hongbo, An, Rong, Li, Yucui, Jiang, Qian, Chen, Benfang, Zhang, Hongkai, Wang, Dening, Tang, Changxiao, Yuan, Yang, Dai, Jie, Zhan, Jing, He, Weiqiang, Wang, Xuebo, Shi, Jian, Wang, Bin, Gong, Min, He, Xiujing, Li, Peng, Huang, Li, Li, Hui, Pan, Chao, Huang, Hong, Yuan, Guangsheng, Lan, Hai, Nie, Yongxin, Li, Xinzheng, Zhao, Xiangyu, Zhang, Xiansheng, Pan, Guangtang, Wu, Qingyu, Xu, Fang, Zhang, Zhiming (July 2021) Genome assembly of the Chinese maize elite inbred line RP125 and its EMS mutant collection provide new resources for maize genetics research and crop improvement. The Plant journal : for cell and molecular biology. ISSN 1365-313X

Nielsen, Sebastian R, Strøbech, Jan E, Horton, Edward R, Jackstadt, Rene, Laitala, Anu, Bravo, Marina C, Maltese, Giorgia, Jensen, Adina RD, Reuten, Raphael, Rafaeva, Maria, Karim, Saadia A, Hwang, Chang-Il, Arnes, Luis, Tuveson, David A, Sansom, Owen J, Morton, Jennifer P, Erler, Janine T (June 2021) Suppression of tumor-associated neutrophils by lorlatinib attenuates pancreatic cancer growth and improves treatment with immune checkpoint blockade. Nature Communications, 12 (1). p. 3414. ISSN 2041-1723

Ning, Qiang, Jian, Yinan, Du, Yanfang, Li, Yunfu, Shen, Xiaomeng, Jia, Haitao, Zhao, Ran, Zhan, Jimin, Yang, Fang, Jackson, David, Liu, Lei, Zhang, Zuxin (October 2021) An ethylene biosynthesis enzyme controls quantitative variation in maize ear length and kernel yield. Nature Communications, 12 (1). p. 5832. ISSN 2041-1723

Nowak, D. G., Katsenelson, K. C., Watrud, K. E., Chen, M., Mathew, G., D'Andrea, V. D., Lee, M. F., Swamynathan, M. M., Casanova-Salas, I., Jibilian, M. C., Buckholtz, C. L., Ambrico, A. J., Pan, C. H., Wilkinson, J. E., Newton, A. C., Trotman, L. C. (May 2019) The PHLPP2 phosphatase is a druggable driver of prostate cancer progression. J Cell Biol, 218 (6). pp. 1943-1957. ISSN 0021-9525

Nowak, M., Kramer, B., Haupt, M., Papapanou, P. N., Kebschull, J., Hoffmann, P., Jepsen, S., Perner, S., Schmidt-Wolf, I. G. H., Kebschull, M. (September 2012) Activation of invariant natural killer T-cells in periodontitis lesions. Immunology, 137 (S1). p. 465. ISSN 0019-2805

Nurk, Sergey, Koren, Sergey, Rhie, Arang, Rautiainen, Mikko, Bzikadze, Andrey V, Mikheenko, Alla, Vollger, Mitchell R, Altemose, Nicolas, Uralsky, Lev, Gershman, Ariel, Aganezov, Sergey, Hoyt, Savannah J, Diekhans, Mark, Logsdon, Glennis A, Alonge, Michael, Antonarakis, Stylianos E, Borchers, Matthew, Bouffard, Gerard G, Brooks, Shelise Y, Caldas, Gina V, Chen, Nae-Chyun, Cheng, Haoyu, Chin, Chen-Shan, Chow, William, de Lima, Leonardo G, Dishuck, Philip C, Durbin, Richard, Dvorkina, Tatiana, Fiddes, Ian T, Formenti, Giulio, Fulton, Robert S, Fungtammasan, Arkarachai, Garrison, Erik, Grady, Patrick GS, Graves-Lindsay, Tina A, Hall, Ira M, Hansen, Nancy F, Hartley, Gabrielle A, Haukness, Marina, Howe, Kerstin, Hunkapiller, Michael W, Jain, Chirag, Jain, Miten, Jarvis, Erich D, Kerpedjiev, Peter, Kirsche, Melanie, Kolmogorov, Mikhail, Korlach, Jonas, Kremitzki, Milinn, Li, Heng, Maduro, Valerie V, Marschall, Tobias, McCartney, Ann M, McDaniel, Jennifer, Miller, Danny E, Mullikin, James C, Myers, Eugene W, Olson, Nathan D, Paten, Benedict, Peluso, Paul, Pevzner, Pavel A, Porubsky, David, Potapova, Tamara, Rogaev, Evgeny I, Rosenfeld, Jeffrey A, Salzberg, Steven L, Schneider, Valerie A, Sedlazeck, Fritz J, Shafin, Kishwar, Shew, Colin J, Shumate, Alaina, Sims, Ying, Smit, Arian FA, Soto, Daniela C, Sović, Ivan, Storer, Jessica M, Streets, Aaron, Sullivan, Beth A, Thibaud-Nissen, Françoise, Torrance, James, Wagner, Justin, Walenz, Brian P, Wenger, Aaron, Wood, Jonathan MD, Xiao, Chunlin, Yan, Stephanie M, Young, Alice C, Zarate, Samantha, Surti, Urvashi, McCoy, Rajiv C, Dennis, Megan Y, Alexandrov, Ivan A, Gerton, Jennifer L, O'Neill, Rachel J, Timp, Winston, Zook, Justin M, Schatz, Michael C, Eichler, Evan E, Miga, Karen H, Phillippy, Adam M (April 2022) The complete sequence of a human genome. Science, 376 (6588). pp. 44-53. ISSN 0036-8075

O

Obreshkove, V., Banta, Arthur Mangun (1928) A study of the rate of oxygen consumption of different Cladocera clones derived from a single mother. The Anatomical Record, 41 (1). pp. 33-34.

Ogawa, Yuki, Lim, Brian C, George, Shanu, Oses-Prieto, Juan A, Rasband, Joshua M, Eshed-Eisenbach, Yael, Hamdan, Hamdan, Nair, Supna, Boato, Francesco, Peles, Elior, Burlingame, Alma L, Van Aelst, Linda, Rasband, Matthew N (October 2023) Antibody-directed extracellular proximity biotinylation reveals that Contactin-1 regulates axo-axonic innervation of axon initial segments. Nature Communications, 14 (1). p. 6797. ISSN 2041-1723

Ogawa, Yuki, Lim, Brian C, George, Shanu, Oses-Prieto, Juan A, Rasband, Joshua M, Eshed-Eisenbach, Yael, Nair, Supna, Boato, Francesco, Peles, Elior, Burlingame, Alma L, Van Aelst, Linda, Rasband, Matthew N (March 2023) Antibody-directed extracellular proximity biotinylation reveals Contactin-1 regulates axo-axonic innervation of axon initial segments. (Submitted)

Okamura, Eiichi, Tam, Oliver H, Posfai, Eszter, Li, Lingyu, Cockburn, Katie, Lee, Cheryl QE, Garner, Jodi, Rossant, Janet (November 2019) Esrrb function is required for proper primordial germ cell development in presomite stage mouse embryos. Developmental Biology, 455 (2). pp. 382-392. ISSN 0012-1606

Olsen, Timothy, Caruana, Dennis, Cheslack-Postava, Keely, Szema, Austin, Thieme, Juergen, Kiss, Andrew, Singh, Malvika, Smith, Gregory, McClain, Steven, Glotch, Timothy, Esposito, Michael, Promisloff, Robert, Ng, David, He, Xueyan, Egeblad, Mikala, Kew, Richard, Szema, Anthony (August 2022) Iraq/Afghanistan war lung injury reflects burn pits exposure. Scientific Reports, 12 (1). p. 14671. ISSN 2045-2322

Omary, Moutasem, Gil-Yarom, Naama, Yahav, Chen, Steiner, Evyatar, Hendelman, Anat, Efroni, Idan (March 2022) A conserved superlocus regulates above- and belowground root initiation. Science, 375 (6584). eabf4368. ISSN 0036-8075

Oni, T. E., Biffi, G., Baker, L. A., Hao, Y., Tonelli, C., Somerville, T. D. D., Deschênes, A., Belleau, P., Hwang, C. I., Sánchez-Rivera, F. J., Cox, H., Brosnan, E., Doshi, A., Lumia, R. P., Khaledi, K., Park, Y., Trotman, L. C., Lowe, S. W., Krasnitz, A., Vakoc, C. R., Tuveson, D. A. (July 2020) SOAT1 promotes mevalonate pathway dependency in pancreatic cancer. J Exp Med, 217 (9). ISSN 0022-1007

Ono, T., Losada, A., Hirano, M., Myers, M. P., Neuwald, A. F., Hirano, T. (October 2003) Differential contributions of condensin I and condensin II to mitotic chromosome architecture in vertebrate cells. Cell, 115 (1). pp. 109-121. ISSN 0092-8674

Ordovas-Montanes, J., Beyaz, S., Rakoff-Nahoum, S., Shalek, A. K. (February 2020) Distribution and storage of inflammatory memory in barrier tissues. Nat Rev Immunol, 20 (5). pp. 308-320. ISSN 1474-1733

Ott, T., Nieder, A. (January 2019) Dopamine and Cognitive Control in Prefrontal Cortex. Trends Cogn Sci, 23 (3). pp. 213-234. ISSN 1364-6613

Ouyang, W., Liao, W., Luo, C. T., Yin, N., Huse, M., Kim, M. V., Peng, M., Chan, P., Ma, Q., Mo, Y., Meijer, D., Zhao, K., Rudensky, A. Y., Atwal, G., Zhang, M. Q., Li, M. O. (November 2012) Novel Foxo1-dependent transcriptional programs control T reg cell function. Nature, 491 (7425). pp. 554-559.

Oviedo, H. V., Reyes, A. D. (March 2012) Integration of Subthreshold and Suprathreshold Excitatory Barrages along the Somatodendritic Axis of Pyramidal Neurons. PLoS ONE, 7 (3). e33831. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

P

Paffenholz, Stella V, Salvagno, Camilla, Ho, Yu-Jui, Limjoco, Matthew, Baslan, Timour, Tian, Sha, Kulick, Amanda, de Stanchina, Elisa, Wilkinson, John E, Barriga, Francisco M, Zamarin, Dmitriy, Cubillos-Ruiz, Juan R, Leibold, Josef, Lowe, Scott W (February 2022) Senescence induction dictates response to chemo- and immunotherapy in preclinical models of ovarian cancer. Proceedings of the National Academy of Sciences of USA, 119 (5). e2117754119-e2117754119. ISSN 0027-8424

Pai, E. L., Vogt, D., Clemente-Perez, A., McKinsey, G. L., Cho, F. S., Hu, J. S., Wimer, M., Paul, A., Fazel Darbandi, S., Pla, R., Nowakowski, T. J., Goodrich, L. V., Paz, J. T., Rubenstein, J. L. R. (January 2019) Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function. Cell Rep, 26 (5). 1157-1173.e5. ISSN 2211-1247

Pai, S., Erlich, J. C., Kopec, C., Brody, C. D. (September 2011) Minimal impairment in a rat model of duration discrimination following excitotoxic lesions of primary auditory and prefrontal cortices. Front Syst Neurosci, 5 (74). ISSN 1662-5137

Panea, C, Zhang, R, VanValkenburgh, J, Ni, M, Adler, C, Wei, Y, Ochoa, F, Schmahl, J, Tang, Y, Siao, CJ, Poueymirou, W, Espert, J, Lim, WK, Atwal, GS, Murphy, AJ, Sleeman, MA, Hovhannisyan, Z, Haxhinasto, S (July 2021) Butyrophilin-like 2 regulates site-specific adaptations of intestinal γδ intraepithelial lymphocytes. Communications Biology, 4 (1). ISSN 2399-3642 (In Press)

Papayannakos, Christopher J, DeVoti, James A, Israr, Mohd, Alsudani, Habeeb, Bonagura, Vincent, Steinberg, Bettie M (July 2021) Extracellular vesicles produced by primary human keratinocytes in response to TLR agonists induce stimulus-specific responses in antigen-presenting cells. Cellular Signalling, 83. p. 109994. ISSN 0898-6568

Paszkowski, J., Martienssen, R. A. (November 2012) Cell signaling and gene regulation. Current Opinion in Plant Biology, 15 (5). pp. 493-495. ISSN 1369-5266

Paul, Thomas A, Rovnak, Joel, Quackenbush, Sandra L, Whitlock, Kathleen, Zhan, Huiqing, Gong, Zhiyuan, Spitsbergen, Jan, Bowser, Paul R, Casey, James W (April 2011) Transgenic expression of walleye dermal sarcoma virus rv-cyclin (orfA) in zebrafish does not result in tissue proliferation. Marine Biotechnology, 13 (2). pp. 142-150. ISSN 1436-2228

Paul, A., Cai, Y., Atwal, G. S., Huang, Z. J. (June 2012) Developmental Coordination of Gene Expression between Synaptic Partners During GABAergic Circuit Assembly in Cerebellar Cortex. Frontiers in Neural Circuits, 6. p. 37. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Pearson, H. B., Perez-Mancera, P. A., Dow, L. E., Ryan, A., Tennstedt, P., Bogani, D., Elsum, I., Greenfield, A., Tuveson, D. A., Simon, R., Humbert, P. O. (November 2011) SCRIB expression is deregulated in human prostate cancer, and its deficiency in mice promotes prostate neoplasia. Journal of Clinical Investigation, 121 (11). pp. 4257-4267. ISSN 0021-9738

Peng, Hanchuan, Xie, Peng, Liu, Lijuan, Kuang, Xiuli, Wang, Yimin, Qu, Lei, Gong, Hui, Jiang, Shengdian, Li, Anan, Ruan, Zongcai, Ding, Liya, Yao, Zizhen, Chen, Chao, Chen, Mengya, Daigle, Tanya L, Dalley, Rachel, Ding, Zhangcan, Duan, Yanjun, Feiner, Aaron, He, Ping, Hill, Chris, Hirokawa, Karla E, Hong, Guodong, Huang, Lei, Kebede, Sara, Kuo, Hsien-Chi, Larsen, Rachael, Lesnar, Phil, Li, Longfei, Li, Qi, Li, Xiangning, Li, Yaoyao, Li, Yuanyuan, Liu, An, Lu, Donghuan, Mok, Stephanie, Ng, Lydia, Nguyen, Thuc Nghi, Ouyang, Qiang, Pan, Jintao, Shen, Elise, Song, Yuanyuan, Sunkin, Susan M, Tasic, Bosiljka, Veldman, Matthew B, Wakeman, Wayne, Wan, Wan, Wang, Peng, Wang, Quanxin, Wang, Tao, Wang, Yaping, Xiong, Feng, Xiong, Wei, Xu, Wenjie, Ye, Min, Yin, Lulu, Yu, Yang, Yuan, Jia, Yuan, Jing, Yun, Zhixi, Zeng, Shaoqun, Zhang, Shichen, Zhao, Sujun, Zhao, Zijun, Zhou, Zhi, Huang, Z Josh, Esposito, Luke, Hawrylycz, Michael J, Sorensen, Staci A, Yang, X William, Zheng, Yefeng, Gu, Zhongze, Xie, Wei, Koch, Christof, Luo, Qingming, Harris, Julie A, Wang, Yun, Zeng, Hongkui (October 2021) Morphological diversity of single neurons in molecularly defined cell types. Nature, 598 (7879). pp. 174-181. ISSN 0028-0836

Perlee, Sarah, Kikuchi, Sota, Nakadai, Tomoyoshi, Masuda, Takeshi, Ohtsuki, Sumio, Matsumoto, Makoto, Rahmutulla, Bahityar, Fukuyo, Masaki, Cifani, Paolo, Kentsis, Alex, Roeder, Robert G, Kaneda, Atsushi, Hoshii, Takayuki (October 2023) SETD1A function in leukemia is mediated through interaction with mitotic regulators BuGZ/BUB3. EMBO Reports, 24 (10). e57108. ISSN 1469-221X

Perry, Lauren M, Pan, Dana, Loehfelm, Thomas W, Tejaswi, Sooraj, Gholami, Sepideh (December 2020) Pancreaticoportal Fistula Causing Hepatic Necrosis Treated With Pancreatic Duct Stenting. American Journal of Gastroenterology, 115 (12). p. 1933. ISSN 0002-9270

Petruzzelli, M, Ferrer, M, Schuijs, MJ, Kleeman, SO, Mourikis, N, Hall, Z, Perera, D, Raghunathan, S, Vacca, M, Gaude, E, Lukey, MJ, Jodrell, DI, Frezza, C, Wagner, EF, Venkitaraman, AR, Halim, TYF, Janowitz, T (February 2022) Early Neutrophilia Marked by Aerobic Glycolysis Sustains Host Metabolism and Delays Cancer Cachexia. Cancers, 14 (4). p. 963. ISSN 2072-6694

Pfeffer, C. K., Xue, M., He, M., Huang, Z. J., Scanziani, M. (August 2013) Inhibition of inhibition in visual cortex: The logic of connections between molecularly distinct interneurons. Nature Neuroscience, 16 (8). pp. 1068-1076. ISSN 10976256

Phan, Minh Son, Matho, Katherine, Beaurepaire, Emmanuel, Livet, Jean, Chessel, Anatole (July 2022) nAdder: A scale-space approach for the 3D analysis of neuronal traces. PLoS Computational Biology, 18 (7). e1010211. ISSN 1553-734X

Pinskiy, V., Tolpygo, A. S., Jones, J., Weber, K., Franciotti, N., Mitra, P. P. (2013) A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal of Neuroscience Methods, 218 (2). pp. 206-21. ISSN 0165-0270

Pisano, Thomas J, Dhanerawala, Zahra M, Kislin, Mikhail, Bakshinskaya, Dariya, Engel, Esteban A, Hansen, Ethan J, Hoag, Austin T, Lee, Junuk, de Oude, Nina L, Venkataraju, Kannan Umadevi, Verpeut, Jessica L, Hoebeek, Freek E, Richardson, Ben D, Boele, Henk-Jan, Wang, Samuel S-H (September 2021) Homologous organization of cerebellar pathways to sensory, motor, and associative forebrain. Cell reports, 36 (12). p. 109721. ISSN 2211-1247

Pollatou, A., Ferrante, D. D. (August 2020) Out-of-focus brain image detection in serial tissue sections. J Neurosci Methods, 345. p. 108852. ISSN 0165-0270

Polyanskaya, Sofya A, Moreno, Rosamaria Y, Lu, Bin, Feng, Ruopeng, Yao, Yu, Irani, Seema, Klingbeil, Olaf, Yang, Zhaolin, Wei, Yiliang, Demerdash, Osama E, Benjamin, Lukas A, Weiss, Mitchell J, Zhang, Yan Jessie, Vakoc, Christopher R (January 2022) SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia. Cell Reports, 38 (2). p. 110233. ISSN 2211-1247

Pomella, Silvia, Cassandri, Matteo, D'Archivio, Lucrezia, Porrazzo, Antonella, Cossetti, Cristina, Phelps, Doris, Perrone, Clara, Pezzella, Michele, Cardinale, Antonella, Wachtel, Marco, Aloisi, Sara, Milewski, David, Colletti, Marta, Sreenivas, Prethish, Walters, Zoë S, Barillari, Giovanni, Di Giannatale, Angela, Milano, Giuseppe Maria, De Stefanis, Cristiano, Alaggio, Rita, Rodriguez-Rodriguez, Sonia, Carlesso, Nadia, Vakoc, Christopher R, Velardi, Enrico, Schafer, Beat W, Guccione, Ernesto, Gatz, Susanne A, Wasti, Ajla, Yohe, Marielle, Ignatius, Myron, Quintarelli, Concetta, Shipley, Janet, Miele, Lucio, Khan, Javed, Houghton, Peter J, Marampon, Francesco, Gryder, Berkley E, De Angelis, Biagio, Locatelli, Franco, Rota, Rossella (December 2023) MYOD-SKP2 axis boosts tumorigenesis in fusion negative rhabdomyosarcoma by preventing differentiation through p57Kip2 targeting. Nature Communications, 14 (1). p. 8373. ISSN 2041-1723

Ponz-Sarvise, M., Corbo, V., Tiriac, H., Engle, D. D., Frese, K. K., Oni, T. E., Hwang, C. I., Ohlund, D., Chio, I. I. C., Baker, L. A., Filippini, D., Wright, K., Bapiro, T. E., Huang, P. S., Smith, P. D., Yu, K. H., Jodrell, D. I., Park, Y., Tuveson, D. A. (September 2019) Identification of Resistance Pathways Specific to Malignancy Using Organoid Models of Pancreatic Cancer. Clin Cancer Res, 25 (22). pp. 6742-6755. ISSN 1078-0432 (Print)1078-0432

Pouchelon, Gabrielle, Dwivedi, Deepanjali, Bollmann, Yannick, Agba, Chimuanya K, Xu, Qing, Mirow, Andrea MC, Kim, Sehyun, Qiu, Yanjie, Sevier, Elaine, Ritola, Kimberly D, Cossart, Rosa, Fishell, Gord (November 2021) The organization and development of cortical interneuron presynaptic circuits are area specific. Cell Reports, 37 (6). p. 109993. ISSN 2211-1247

Prasanna, Pataje G, Citrin, Deborah E, Hildesheim, Jeffrey, Ahmed, Mansoor M, Venkatachalam, Sundar, Riscuta, Gabriela, Xi, Dan, Zheng, Guangrong, Deursen, Jan van, Goronzy, Jorg, Kron, Stephen J, Anscher, Mitchell S, Sharpless, Norman E, Campisi, Judith, Brown, Stephen L, Niedernhofer, Laura J, O'Loghlen, Ana, Georgakilas, Alexandros G, Paris, Francois, Gius, David, Gewirtz, David A, Schmitt, Clemens A, Abazeed, Mohamed E, Kirkland, James L, Richmond, Ann, Romesser, Paul B, Lowe, Scott W, Gil, Jesus, Mendonca, Marc S, Burma, Sandeep, Zhou, Daohong, Coleman, C Norman (October 2021) Therapy-Induced Senescence: Opportunities to Improve Anticancer Therapy. Journal of the National Cancer Institute, 113 (10). pp. 1285-1298. ISSN 0027-8874

Prasanth, K. V. , Spector, D. L. (2005) The cell nucleus. In: Encyclopedia of life sciences. John Wiley & Sons, London ; New York. ISBN 0470016175

Q

Qian, Zhe, Song, Dongyan, Ipsaro, Jonathan J, Bautista, Carmelita, Joshua-Tor, Leemor, Yeh, Johannes T-H, Tonks, Nicholas K (September 2023) Manipulating PTPRD function with ectodomain antibodies. Genes and Development. ISSN 0890-9369

Qian, Yongjun, Li, Jiayun, Zhao, Shengli, Matthews, Elizabeth A, Adoff, Michael, Zhong, Weixin, An, Xu, Yeo, Michele, Park, Christine, Yang, Xiaolu, Wang, Bor-Shuen, Southwell, Derek G, Huang, Z Josh (October 2022) Programmable RNA sensing for cell monitoring and manipulation. Nature. ISSN 0028-0836

Qin, Hongtao, Cressy, Michael, Li, Wanhe, Coravos, Jonathan S, Izzi, Stephanie A, Dubnau, Joshua (April 2012) Gamma Neurons Mediate Dopaminergic Input during Aversive Olfactory Memory Formation in Drosophila. Current Biology, 22 (7). pp. 608-614. ISSN 0960-9822

Quail, Daniela F, Amulic, Borko, Aziz, Monowar, Barnes, Betsy J, Eruslanov, Evgeniy, Fridlender, Zvi G, Goodridge, Helen S, Granot, Zvi, Hidalgo, Andrés, Huttenlocher, Anna, Kaplan, Mariana J, Malanchi, Ilaria, Merghoub, Taha, Meylan, Etienne, Mittal, Vivek, Pittet, Mikael J, Rubio-Ponce, Andrea, Udalova, Irina A, van den Berg, Timo K, Wagner, Denisa D, Wang, Ping, Zychlinsky, Arturo, de Visser, Karin E, Egeblad, Mikala, Kubes, Paul (June 2022) Neutrophil phenotypes and functions in cancer: A consensus statement. Journal of Experimental Medicine, 219 (6). e20220011. ISSN 0022-1007

Quirk, M. C., Sosulski, D. L., Feierstein, C. E., Uchida, N., Mainen, Z. F. (November 2009) A defined network of fast-spiking interneurons in orbitofrontal cortex: responses to behavioral contingencies and ketamine administration. Frontiers in Systems Neuroscience, 3. p. 13. ISSN ISSN 1662-5137

R

Ragan, T., Kadiri, L. R., Venkataraju, K. U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H. S., Osten, P. (March 2012) Serial two-photon tomography for automated ex vivo mouse brain imaging. Nature Methods, 9 (3). pp. 255-258. ISSN 15487091 (ISSN)

Rahman, M. A., Lin, K. T., Bradley, R. K., Abdel-Wahab, O., Krainer, A. R. (March 2020) Recurrent SRSF2 mutations in MDS affect both splicing and NMD. Genes Dev, 34 (5-6). pp. 413-427. ISSN 0890-9369

Ranade, S. P., Mainen, Z. F. (August 2009) Transient firing of dorsal raphe neurons encodes diverse and specific sensory, motor and reward events. Journal of Neurophysiology, 102 (5). pp. 3026-3037. ISSN 00223077 (ISSN)

Rappold, Phillip M, Vuong, Lynda, Leibold, Josef, Chakiryan, Nicholas H, Curry, Michael, Kuo, Fengshen, Sabio, Erich, Jiang, Hui, Nixon, Briana G, Liu, Ming, Berglund, Anders E, Silagy, Andrew W, Mascareno, Eduardo A, Golkaram, Mahdi, Marker, Mahtab, Reising, Albert, Savchenko, Alexander, Millholland, John, Chen, Ying-Bei, Russo, Paul, Coleman, Jonathan, Reznik, Ed, Manley, Brandon J, Ostrovnaya, Irina, Makarov, Vladimir, DiNatale, Renzo G, Blum, Kyle A, Ma, Xiaoxiao, Chowell, Diego, Li, Ming O, Solit, David B, Lowe, Scott W, Chan, Timothy A, Motzer, Robert J, Voss, Martin H, Hakimi, A Ari (October 2022) A Targetable Myeloid Inflammatory State Governs Disease Recurrence in Clear-Cell Renal Cell Carcinoma. Cancer Discovery, 12 (10). pp. 2308-2329. ISSN 2159-8274

Rashid, S., Long, Z., Singh, S., Kohram, M., Vashistha, H., Navlakha, S., Salman, H., Oltvai, Z. N., Bar-Joseph, Z. (June 2019) Adjustment in tumbling rates improves bacterial chemotaxis on obstacle-laden terrains. Proc Natl Acad Sci U S A, 116 (24). pp. 11770-11775. ISSN 0027-8424 (Public Dataset)

Rebbeck, C. A., Leroi, A. M., Burt, A. (January 2011) Mitochondrial capture by a transmissible cancer. Science, 331 (6015). p. 303.

Rehberg, M., Lepier, A., Solchenberger, B., Osten, P., Blum, R. (October 2008) A new non-disruptive strategy to target calcium indicator dyes to the endoplasmic reticulum. Cell Calcium, 44 (4). pp. 386-99. ISSN 0143-4160 (Print)

Rein, B., Tan, T., Yang, F., Wang, W., Williams, J., Zhang, F., Mills, A., Yan, Z. (February 2020) Reversal of Synaptic and Behavioral Deficits in a 16p11.2 Duplication Mouse Model via Restoration of the GABA Synapse Regulator Npas4. Mol Psychiatry. ISSN 1359-4184

Ren, Zuen, Liang, Huizhi, Galbo, Phillip M, Dharmaratne, Malindrie, Kulkarni, Ameya S, Fard, Atefeh Taherian, Aoun, Marie Louise, Martinez-Lopez, Nuria, Suyama, Kimita, Benard, Outhiriaradjou, Zheng, Wei, Liu, Yang, Albanese, Joseph, Zheng, Deyou, Mar, Jessica C, Singh, Rajat, Prystowsky, Michael B, Norton, Larry, Hazan, Rachel B (February 2022) Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer. Proceedings of the National Academy of Sciences of USA, 119 (8). e2107266119-e2107266119. ISSN 0027-8424

Replogle, J. M., Zhou, W., Amaro, A. E., McFarland, J. M., Villalobos-Ortiz, M., Ryan, J., Letai, A., Yilmaz, O., Sheltzer, J., Lippard, S. J., Ben-David, U., Amon, A. (December 2020) Aneuploidy increases resistance to chemotherapeutics by antagonizing cell division. Proc Natl Acad Sci U S A, 117 (48). pp. 30566-30576. ISSN 0027-8424 (Print)0027-8424

Rey-Suarez, Ivan, Wheatley, Brittany A, Koo, Peter, Bhanja, Anshuman, Shu, Zhou, Mochrie, Simon, Song, Wenxia, Shroff, Hari, Upadhyaya, Arpita (January 2020) WASP family proteins regulate the mobility of the B cell receptor during signaling activation. Nature Communications, 11 (1). p. 439. ISSN 2041-1723

Ricardo-Lax, Inna, Luna, Joseph M, Thao, Tran Thi Nhu, Le Pen, Jérémie, Yu, Yingpu, Hoffmann, H-Heinrich, Schneider, William M, Razooky, Brandon S, Fernandez-Martinez, Javier, Schmidt, Fabian, Weisblum, Yiska, Trüeb, Bettina Salome, Berenguer Veiga, Inês, Schmied, Kimberly, Ebert, Nadine, Michailidis, Eleftherios, Peace, Avery, Sánchez-Rivera, Francisco J, Lowe, Scott W, Rout, Michael P, Hatziioannou, Theodora, Bieniasz, Paul D, Poirier, John T, MacDonald, Margaret R, Thiel, Volker, Rice, Charles M (October 2021) Replication and single-cycle delivery of SARS-CoV-2 replicons. Science. ISSN 0036-8075

Richards, B. A., Lillicrap, T. P., Beaudoin, P., Bengio, Y., Bogacz, R., Christensen, A., Clopath, C., Costa, R. P., de Berker, A., Ganguli, S., Gillon, C. J., Hafner, D., Kepecs, A., Kriegeskorte, N., Latham, P., Lindsay, G. W., Miller, K. D., Naud, R., Pack, C. C., Poirazi, P., Roelfsema, P., Sacramento, J., Saxe, A., Scellier, B., Schapiro, A. C., Senn, W., Wayne, G., Yamins, D., Zenke, F., Zylberberg, J., Therien, D., Kording, K. P. (November 2019) A deep learning framework for neuroscience. Nat Neurosci, 22 (11). pp. 1761-1770. ISSN 1097-6256

Riddle, Oscar (June 1908) The rate of growth of the egg-yolk in the chick, and the significance of white and yellow yolk in the ova of vertebrates. Science, 27 (703). p. 945.

Riddle, Oscar, Reinhart, Warren H. (1928) Physiological activity and the Manoilov reaction. The American Journal of Physiology, 87 (2). pp. 517-525.

Roach, James, Churchland, Anne, Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits. (Submitted)

Roach, James P, Churchland, Anne K, Engel, Tatiana A (January 2023) Choice selective inhibition drives stability and competition in decision circuits. Nature Communications, 14 (1). p. 147. ISSN 2041-1723

Rodriguez-Leal, D., Xu, C., Kwon, C. T., Soyars, C., Demesa-Arevalo, E., Man, J., Liu, L., Lemmon, Z. H., Jones, D. S., Van Eck, J., Jackson, D. P., Bartlett, M. E., Nimchuk, Z. L., Lippman, Z. B. (April 2019) Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nat Genet, 51 (5). pp. 786-792. ISSN 1061-4036

Rogava, Meri, Aprati, Tyler J, Chi, Wei-Yu, Melms, Johannes C, Hug, Clemens, Davis, Stephanie H, Earlie, Ethan M, Chung, Charlie, Deshmukh, Sachin K, Wu, Sharon, Sledge, George, Tang, Stephen, Ho, Patricia, Amin, Amit Dipak, Caprio, Lindsay, Gurjao, Carino, Tagore, Somnath, Ngo, Bryan, Lee, Michael J, Zanetti, Giorgia, Wang, Yiping, Chen, Sean, Ge, William, Melo, Luiza Martins Nascentes, Allies, Gabriele, Rösler, Jonas, Gibney, Goeffrey T, Schmitz, Oliver J, Sykes, Megan, Creusot, Rémi J, Tüting, Thomas, Schadendorf, Dirk, Röcken, Martin, Eigentler, Thomas K, Molotkov, Andrei, Mintz, Akiva, Bakhoum, Samuel F, Beyaz, Semir, Cantley, Lewis C, Sorger, Peter K, Meckelmann, Sven W, Tasdogan, Alpaslan, Liu, David, Laughney, Ashley M, Izar, Benjamin (January 2024) Loss of Pip4k2c confers liver-metastatic organotropism through insulin-dependent PI3K-AKT pathway activation. Nature Cancer. ISSN 2662-1347 (Public Dataset)

Ropelewski, Alexander J, Rizzo, Megan A, Swedlow, Jason R, Huisken, Jan, Osten, Pavel, Khanjani, Neda, Weiss, Kurt, Bakalov, Vesselina, Engle, Michelle, Gridley, Lauren, Krzyzanowski, Michelle, Madden, Tom, Maiese, Deborah, Mandal, Meisha, Waterfield, Justin, Williams, David, Hamilton, Carol M, Huggins, Wayne (July 2022) Standard metadata for 3D microscopy. Scientific Data, 9 (1). p. 449. ISSN 2052-4463

Rozenblit, M., Hendrickx, W., Heguy, A., Chiriboga, L., Loomis, C., Ray, K., Darvishian, F., Egeblad, M., Demaria, S., Marincola, F. M., Bedognetti, D., Adams, S. (June 2019) Transcriptomic profiles conducive to immune-mediated tumor rejection in human breast cancer skin metastases treated with Imiquimod. Sci Rep, 9 (1). p. 8572. ISSN 2045-2322

Ruiz-Ortiz, Jenelys, Tollkuhn, Jessica (January 2021) Specificity in sociogenomics: Identifying causal relationships between genes and behavior. Hormones and Behaviour, 127. p. 104882. ISSN 0018-506X

Rupert, Deborah D, Pagliaro, Alexa, Choe, Jane, Shea, Stephen D (August 2023) Selective deletion of Methyl CpG binding protein 2 from parvalbumin interneurons in the auditory cortex delays the onset of maternal retrieval in mice. The Journal of Neuroscience. JN-RM-0838-23. ISSN 0270-6474

Rupert, Deborah D, Shea, Stephen D (May 2022) Parvalbumin-Positive Interneurons Regulate Cortical Sensory Plasticity in Adulthood and Development Through Shared Mechanisms. Frontiers in Neural Circuits, 16. p. 886629. ISSN 1662-5110

S

Safaric Tepes, Polona, Pal, Debjani, Lindsted, Trine, Ibarra, Ingrid, Lujambio, Amaia, Jimenez Sabinina, Vilma, Senturk, Serif, Miller, Madison, Korimerla, Navya, Huang, Jiahao, Glassman, Lawrence, Lee, Paul, Zeltsman, David, Hyman, Kevin, Esposito, Michael, Hannon, Greg, Sordella, Raffaella (July 2021) An epigenetic switch regulates the ontogeny of AXL positive/EGFR-TKI resistant cells by modulating miR-335 expression. eLife, 10. ISSN 2050-084X

Sahai, E., Astsaturov, I., Cukierman, E., DeNardo, D. G., Egeblad, M., Evans, R. M., Fearon, D., Greten, F. R., Hingorani, S. R., Hunter, T., Hynes, R. O., Jain, R. K., Janowitz, T., Jorgensen, C., Kimmelman, A. C., Kolonin, M. G., Maki, R. G., Powers, R. S., Pure, E., Ramirez, D. C., Scherz-Shouval, R., Sherman, M. H., Stewart, S., Tlsty, T. D., Tuveson, D. A., Watt, F. M., Weaver, V., Weeraratna, A. T., Werb, Z. (March 2020) A framework for advancing our understanding of cancer-associated fibroblasts. Nat Rev Cancer, 20 (3). pp. 174-186. ISSN 1474-175x

Sapiro, A. L., Shmueli, A., Henry, G. L., Li, Q., Shalit, T., Yaron, O., Paas, Y., Billy Li, J., Shohat-Ophir, G. (February 2019) Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain. Proc Natl Acad Sci U S A, 116 (6). pp. 2318-2327. ISSN 0027-8424

Sartorius, A., Henn, F. A. (2007) Deep brain stimulation of the lateral habenula in treatment resistant major depression. Med Hypotheses, 69 (6). pp. 1305-8. ISSN 0306-9877 (Print)0306-9877 (Linking)

Sartorius, A., Ruf, M., Kief, C., Demirakca, T., Bailer, J., Ende, G., Henn, F. A., Meyer-Lindenberg, A., Dressing, H. (August 2008) Abnormal amygdala activation profile in pedophilia. Eur Arch Psychiatry Clin Neurosci, 258 (5). pp. 271-7. ISSN 0940-1334 (Print)0940-1334 (Linking)

Sartorius, A., Schloss, P., Vollmayr, B., Ende, G., Neumann-Haefelin, C., Hoehn, M., Henn, F. A. (2006) Correlation between MR-spectroscopic rat hippocampal choline levels and phospholipase A2. World J Biol Psychiatry, 7 (4). pp. 246-50. ISSN 1562-2975 (Print)1562-2975 (Linking)

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (April 1928) Studies on biochemical differences between sexes in Mucors. 5. Quantitative determinations of sugars in (+) and (-) races. Proceedings of the National Academy of Sciences, 14 (4). pp. 308-316.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (March 1928) Studies on the biochemical differences between sexes in Mucors. 4. Enzymes which act upon carbohydrates and their derivatives. Proceedings of the National Academy of Sciences, 14 (3). pp. 229-235.

Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A., Paninski, L. (April 2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16 (4). e1007791. ISSN 1553-734x

Scharner, J., Ma, W. K., Zhang, Q., Lin, K. T., Rigo, F., Bennett, C. F., Krainer, A. R. (December 2019) Hybridization-mediated off-target effects of splice-switching antisense oligonucleotides. Nucleic Acids Res, 48 (2). ISSN 0305-1048 (Public Dataset)

Schmack, K., Sterzer, P. (June 2019) Delusions: sticking with conclusions. Brain, 142 (6). pp. 1497-1500. ISSN 0006-8950

Schmitt, A., Fendt, M., Zink, M., Ebert, U., Starke, M., Berthold, M., Herb, A., Petroianu, G., Falkai, P., Henn, F. A. (February 2007) Altered NMDA receptor expression and behavior following postnatal hypoxia: potential relevance to schizophrenia. J Neural Transm, 114 (2). pp. 239-48. ISSN 0300-9564 (Print)0300-9564 (Linking)

Schmitt, A., May, B., Muller, B., Jatzko, A., Petroianu, G., Braus, D. F., Henn, F. A. (November 2003) Effects of chronic haloperidol and clozapine treatment on AMPA and kainate receptor binding in rat brain. Pharmacopsychiatry, 36 (6). pp. 292-6. ISSN 0176-3679 (Print)0176-3679 (Linking)

Schmitt, A., Weber, S., Jatzko, A., Braus, D. F., Henn, F. A. (January 2004) Hippocampal volume and cell proliferation after acute and chronic clozapine or haloperidol treatment. J Neural Transm, 111 (1). pp. 91-100. ISSN 0300-9564 (Print)0300-9564 (Linking)

Schulz, D., Smith, D., Yu, M., Lee, H., Henn, F. A. (February 2013) Selective breeding for helplessness in rats alters the metabolic profile of the hippocampus and frontal cortex: A 1H-MRS study at 9.4 T. International Journal of Neuropsychopharmacology, 16 (1). pp. 199-212. ISSN 14611457

Schwörer, Simon, Cimino, Francesco V, Ros, Manon, Tsanov, Kaloyan M, Ng, Charles, Lowe, Scott W, Carmona-Fontaine, Carlos, Thompson, Craig B (May 2023) Hypoxia Potentiates the Inflammatory Fibroblast Phenotype Promoted by Pancreatic Cancer Cell-Derived Cytokines. Cancer Research, 83 (10). pp. 1596-1610. ISSN 0008-5472

Seeburg, P. H., Osten, P. (August 2003) Neurobiology: a thorny issue. Nature, 424 (6949). pp. 627-8. ISSN 1476-4687 (Electronic)

Seidenman, K. J., Steinberg, J. P., Huganir, R., Malinow, R. (October 2003) Glutamate receptor subunit 2 serine 880 phosphorylation modulates synaptic transmission and mediates plasticity in CA1 pyramidal cells. Journal of Neuroscience, 23 (27). pp. 9220-9228. ISSN 0270-6474

Sekutowicz, M., Guggenmos, M., Kuitunen-Paul, S., Garbusow, M., Sebold, M., Pelz, P., Priller, J., Wittchen, H. U., Smolka, M. N., Zimmermann, U. S., Heinz, A., Sterzer, P., Schmack, K. (July 2019) Neural Response Patterns During Pavlovian-to-Instrumental Transfer Predict Alcohol Relapse and Young Adult Drinking. Biol Psychiatry (19). pp. 31513-6. ISSN 0006-3223

Shaashua, Lee, Ben-Shmuel, Aviad, Pevsner-Fischer, Meirav, Friedman, Gil, Levi-Galibov, Oshrat, Nandakumar, Subhiksha, Barki, Debra, Nevo, Reinat, Brown, Lauren E, Zhang, Wenhan, Stein, Yaniv, Lior, Chen, Kim, Han Sang, Bojmar, Linda, Jarnagin, William R, Lecomte, Nicolas, Mayer, Shimrit, Stok, Roni, Bishara, Hend, Hamodi, Rawand, Levy-Lahad, Ephrat, Golan, Talia, Porco, John A, Iacobuzio-Donahue, Christine A, Schultz, Nikolaus, Tuveson, David A, Lyden, David, Kelsen, David, Scherz-Shouval, Ruth (October 2022) BRCA mutational status shapes the stromal microenvironment of pancreatic cancer linking clusterin expression in cancer associated fibroblasts with HSF1 signaling. Nature Communications, 13 (1). p. 6513. ISSN 2041-1723

Shakiba, Mojdeh, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Menocal, Laura, Dündar, Friederike, Carson, Sandra E, Bruno, Emmanuel M, Sanchez-Rivera, Francisco J, Lowe, Scott W, Camara, Steven, Koche, Richard P, Reuter, Vincent P, Socci, Nicholas D, Whitlock, Benjamin, Tamzalit, Fella, Huse, Morgan, Hellmann, Matthew D, Wells, Daniel K, Defranoux, Nadine A, Betel, Doron, Philip, Mary, Schietinger, Andrea (February 2022) TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion. Journal of Experimental Medicine, 219 (2). ISSN 0022-1007

Shanmugam, M., Hernandez, N. (May 2008) Mitotic Functions for SNAP45, a Subunit of the Small Nuclear RNA-activating Protein Complex SNAPc. J Biol Chem, 283 (21). pp. 14845-56.

Sharma, Ashika, Jayakumar, Jaikishan, Mitra, Partha P, Chakraborti, Sutanu, Kumar, P Sreenivasa (June 2021) Application of Supervised Machine Learning to Extract Brain Connectivity Information from Neuroscience Research Articles. Interdisciplinary Sciences: Computational Life Sciences. ISSN 1913-2751

Shen, Yang, Dasgupta, Sanjoy, Navlakha, Saket (September 2023) Reducing Catastrophic Forgetting With Associative Learning: A Lesson From Fruit Flies. Neural Computation. pp. 1-23. ISSN 0899-7667

Shen, W., Da Silva, J. S., He, H., Cline, H. T. (April 2009) Type A GABA-receptor-dependent synaptic transmission sculpts dendritic arbor structure in Xenopus tadpoles in vivo. J Neurosci, 29 (15). pp. 5032-43. ISSN 0270-6474 (Print)1529-2401 (Electronic)

Shen, Yang, Wang, Julia, Navlakha, Saket (August 2021) A Correspondence between Normalization Strategies in Artificial and Biological Neural Networks. Neural Computation. pp. 1-25. ISSN 0899-7667

Sheng, L., Rigo, F., Bennett, C. F., Krainer, A. R., Hua, Y. (April 2020) Comparison of the Efficacy of MOE and PMO Modifications of Systemic Antisense Oligonucleotides in a Severe SMA Mouse Model. Nucleic Acids Research, 6 (48). pp. 2853-2865. ISSN 0305-1048 (Public Dataset)

Sheu, Yi-Jun, Kawaguchi, Risa Karakida, Gillis, Jesse, Stillman, Bruce (December 2022) Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters. eLife, 11. e84320. ISSN 2050-084X (Public Dataset)

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Shih, M. M., Davis, F. P., Henry, G. L., Dubnau, J. (January 2019) Nuclear Transcriptomes of the Seven Neuronal Cell Types That Constitute the Drosophila Mushroom Bodies. G3 (Bethesda), 9 (1). pp. 81-94. ISSN 2160-1836

Shrestha, Padmina, Jaganathan, Anbalagan, Huilgol, Dhananjay, Ballon, Carlos, Hwangbo, Yon, Mills, Alea A (January 2023) Chd5 regulates the transcription factor Six3 to promote neuronal differentiation. Stem Cells. sxad002. ISSN 1066-5099 (Public Dataset)

Shuvaev, S. A., Baserdem, B., Zador, A. M., Koulakov, A. A. (April 2019) Network cloning using DNA barcodes. Proc Natl Acad Sci U S A, 116 (19). pp. 9610-9615. ISSN 0027-8424

Shuvaev, Sergey, Lazutkin, Alexander, Kiryanov, Roman, Anokhin, Konstantin, Enikolopov, Grigori, Koulakov, Alexei A (March 2022) Spatiotemporal 3D image registration for mesoscale studies of brain development. Scientific Reports, 12 (1). p. 3648. ISSN 2045-2322

Silva, J. M., Marran, K., Parker, J. S., Silva, J., Golding, M., Schlabach, M. R., Elledge, S. J., Hannon, G. J., Chang, K. (February 2008) Profiling essential genes in human mammary cells by multiplex RNAi screening. Science, 319 (5863). pp. 617-20.

Silva, Talita M, Borniger, Jeremy C, Alves, Michele Joana, Alzate Correa, Diego, Zhao, Jing, Fadda, Paolo, Toland, Amanda Ewart, Takakura, Ana C, Moreira, Thiago S, Czeisler, Catherine M, Otero, José Javier (April 2021) Machine learning approaches reveal subtle differences in breathing and sleep fragmentation in Phox2b-derived astrocytes ablated mice. Journal of Neurophysiology, 125 (4). pp. 1164-1179. ISSN 0022-3077

Simhal, Anish K, Maclachlan, Kylee H, Elkin, Rena, Zhu, Jiening, Norton, Larry, Deasy, Joseph O, Oh, Jung Hun, Usmani, Saad Z, Tannenbaum, Allen (November 2023) Gene interaction network analysis in multiple myeloma detects complex immune dysregulation associated with shorter survival. Blood Cancer Journal, 13 (1). p. 175. ISSN 2044-5385

Simhal, Anish Kumar, Maclachlan, Kylee H, Usmani, Saad Z, Norton, Larry, Deasy, Joseph O, Oh, Jung Hun, Tannenbaum, Allen (November 2023) Network Modeling of Apoptosis-Related Genes Reveal a High-Risk Cluster in Multiple Myeloma. In: UNSPECIFIED.

Sindhwani, S., Syed, A.M., Ngai, J., Kingston, B.R., Maiorino, L., Rothschild, J., MacMillan, P., Zhang, Y., Rajesh, N.U., Hoang, T., Wu, J.L.Y., Wilhelm, S., Zilman, A., Gadde, S., Sulaiman, A., Ouyang, B., Lin, Z., Wang, L., Egeblad, M., Chan, W.C.W. (January 2020) The entry of nanoparticles into solid tumours. Nat Mater. ISSN 1476-1122 (Public Dataset)

Sinnakannu, J. R., Lee, K. L., Cheng, S., Li, J., Yu, M., Tan, S. P., Ong, C. C. H., Li, H., Than, H., Anczukow-Camarda, O., Krainer, A. R., Roca, X., Rozen, S. G., Iqbal, J., Yang, H., Chuah, C., Ong, S. T. (February 2020) SRSF1 mediates cytokine-induced impaired imatinib sensitivity in chronic myeloid leukemia. Leukemia, 34 (7). pp. 1787-1798. ISSN 0887-6924

Skirpan, A., Culler, A. H., Gallavotti, A., Jackson, D., Cohen, J. D., McSteen, P. (March 2009) BARREN INFLORESCENCE2 Interaction with ZmPIN1a Suggests a Role in Auxin Transport During Maize Inflorescence Development. Plant and Cell Physiology, 50 (3). pp. 652-657. ISSN 0032-0781

Slepicka, P. F., Somasundara, A. V. H., Dos Santos, C. O. (October 2020) The molecular basis of mammary gland development and epithelial differentiation. Semin Cell Dev Biol. ISSN 1084-9521

Somerville, T. D. D., Biffi, G., DaBler-Plenker, J., Hur, S.K., He, X.-Y., Vance, K.E., Miyabayashi, K., Xu, Y., Maia-Silva, D., Klingbeil, O., Demerdash, O. E., Preall, J. B., Hollingsworth, M. A., Egeblad, M., Tuveson, D. A., Vakoc, C. R. (April 2020) Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation. Elife, 9. e53381. ISSN 2050-084x (Public Dataset)

Somerville, T. D. D., Xu, Y., Wu, X. S., Maia-Silva, D., Hur, S. K., de Almeida, L. M. N., Preall, J. B., Koo, P. K., Vakoc, C. R. (May 2020) ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancer. Proc Natl Acad Sci U S A, 117 (21). pp. 11471-11482. ISSN 0027-8424 (Print)0027-8424

Song, G., Kwon, C. T., Kim, S. H., Shim, Y., Lim, C., Koh, H. J., An, G., Kang, K., Paek, N. C. (January 2019) The Rice SPOTTED LEAF4 (SPL4) Encodes a Plant Spastin That Inhibits ROS Accumulation in Leaf Development and Functions in Leaf Senescence. Frontiers in Plant Science, 9. ISSN 1664-462X

Song, Dongyan, Adrover, Jose M, Felice, Christy, Christensen, Lisa N, He, Xue-Yan, Merrill, Joseph R, Wilkinson, John E, Janowitz, Tobias, Lyons, Scott K, Egeblad, Mikala, Tonks, Nicholas K (July 2022) PTP1B inhibitors protect against acute lung injury and regulate CXCR4 signaling in neutrophils. JCI Insight, 7 (14). e158199. ISSN 2379-3708

Soto-Feliciano, Yadira M, Sánchez-Rivera, Francisco J, Perner, Florian, Barrows, Douglas W, Kastenhuber, Edward R, Ho, Yu-Jui, Carroll, Thomas, Xiong, Yijun, Anand, Disha, Soshnev, Alexey A, Gates, Leah, Beytagh, Mary Clare, Cheon, David, Gu, Shengqing, Liu, X Shirley, Krivtsov, Andrei V, Meneses, Maximiliano, de Stanchina, Elisa, Stone, Richard M, Armstrong, Scott A, Lowe, Scott W, Allis, C David (January 2023) A Molecular Switch between Mammalian MLL Complexes Dictates Response to Menin-MLL Inhibition. Cancer Discovery, 13 (1). pp. 146-169. ISSN 2159-8274

Spector, D. L. (December 2006) SnapShot: Cellular Bodies. Cell, 127 (5). p. 1070.

Spors, H., Albeanu, D. F., Murthy, V. N., Rinberg, D., Uchida, N., Wachowiak, M., Friedrich, R. W. (October 2012) Illuminating Vertebrate Olfactory Processing. Journal of Neuroscience, 32 (41). pp. 14102-14108. ISSN 0270-6474

Sroka, Martyna W, Skopelitis, Damianos, Vermunt, Marit W, Preall, Jonathan B, El Demerdash, Osama, de Almeida, Larissa MN, Chang, Kenneth, Utama, Raditya, Gryder, Berkley, Caligiuri, Giuseppina, Ren, Diqiu, Nalbant, Benan, Milazzo, Joseph P, Tuveson, David A, Dobin, Alexander, Hiebert, Scott W, Stengel, Kristy R, Mantovani, Roberto, Khan, Javed, Kohli, Rahul M, Shi, Junwei, Blobel, Gerd A, Vakoc, Christopher R (September 2023) Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3-FOXO1 in rhabdomyosarcoma. Proceedings of the National Academy of Sciences of USA, 120 (36). e2303859120. ISSN 0027-8424 (Public Dataset)

Stadtfeld, M., Apostolou, E., Ferrari, F., Choi, J., Walsh, R. M., Chen, T., Oi, S., Kim, S. Y., Bestor, T., Shioda, T., Park, P. J., Hochedlinger, K. (March 2012) Ascorbic acid prevents loss of Dlk1-Dio3 imprinting and facilitates generation of all-iPS cell mice from terminally differentiated B cells. Nature Genetics, 44. pp. 398-405. ISSN 10614036 (ISSN)

Standring, Oliver, Gholami, Sepideh (September 2023) Adjuvant hepatic artery infusion pump chemotherapy for resected colorectal cancer liver metastases. Surgery, 174 (3). pp. 747-749. ISSN 0039-6060

Stark, K. L., Xu, B., Bagchi, A., Lai, W. S., Liu, H., Hsu, R., Wan, X., Pavlidis, P., Mills, A. A., Karayiorgou, M., Gogos, J. A. (June 2008) Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model. Nat Genet, 40 (6). pp. 751-760.

Steele, Nina G, Biffi, Giulia, Kemp, Samantha B, Zhang, Yaqing, Drouillard, Donovan, Syu, LiJyun, Hao, Yuan, Oni, Tobiloba E, Brosnan, Erin, Elyada, Ela, Doshi, Abhishek, Hansma, Christa, Espinoza, Carlos, Abbas, Ahmed, The, Stephanie, Irizarry-Negron, Valerie, Halbrook, Christopher J, Franks, Nicole E, Hoffman, Megan T, Brown, Kristee, Carpenter, Eileen S, Nwosu, Zeribe C, Johnson, Craig, Lima, Fatima, Anderson, Michelle A, Park, Youngkyu, Crawford, Howard C, Lyssiotis, Costas A, Frankel, Timothy L, Rao, Arvind, Bednar, Filip, Dlugosz, Andrzej A, Preall, Jonathan B, Tuveson, David A, Allen, Benjamin L, Pasca di Magliano, Marina (April 2021) Inhibition of Hedgehog Signaling Alters Fibroblast Composition in Pancreatic Cancer. Clinical Cancer Research, 27 (7). pp. 2023-2037. ISSN 1078-0432

Stefanski, Heather E, Xing, Yan, Nicholls, Jemma, Jonart, Leslie, Goren, Emily, Taylor, Patricia A, Mills, Alea A, Riddle, Megan, McGrath, John, Tolar, Jakub, Hollander, Georg A, Blazar, Bruce R (January 2022) P63 targeted deletion under the FOXN1 promoter disrupts pre-and post-natal thymus development, function and maintenance as well as induces severe hair loss. PLoS One, 17 (1). ISSN 1932-6203

Stepanyants, A., Hirsch, J. A., Martinez, L. M., Kisvarday, Z. F., Ferecsko, A. S., Chklovskii, D. B. (January 2008) Local Potential Connectivity in Cat Primary Visual Cortex. Cerebral Cortex, 18 (1). pp. 13-28.

Stephenson-Jones, M., Bravo-Rivera, C., Ahrens, S., Furlan, A., Xiao, X., Fernandes-Henriques, C., Li, B. (January 2020) Opposing Contributions of GABAergic and Glutamatergic Ventral Pallidal Neurons to Motivational Behaviors. Neuron. ISSN 0896-6273

Stillman, Bruce (February 2022) The remarkable gymnastics of ORC. eLife, 11. ISSN 2050-084X

Su, Q, Kim, SY, Adewale, F, Zhou, Y, Aldler, C, Ni, M, Wei, Y, Burczynski, ME, Atwal, GS, Sleeman, MW, Murphy, AJ, Xin, Y, Cheng, X (November 2021) Single-cell RNA transcriptome landscape of hepatocytes and non-parenchymal cells in healthy and NAFLD mouse liver. iScience, 24 (11). p. 103233. ISSN 2589-0042

Sulger, J., Dumais-Huber, C., Zerfass, R., Henn, F. A., Aldenhoff, J. B. (March 1999) The calcium response of human T lymphocytes is decreased in aging but increased in Alzheimer's dementia. Biological Psychiatry, 45 (6). pp. 737-42. ISSN 0006-3223 (Print)0006-3223 (Linking)

Sultan, Sam, Snider, Joseph, Conn, Adam, Li, Mao, Topp, Christopher N, Navlakha, Saket (2020) A Statistical Growth Property of Plant Root Architectures. Plant Phenomics, 2020. p. 2073723. ISSN 2643-6515

Sun, Lijuan, Han, Xiao, Egeblad, Mikala (December 2022) Isolation of mouse mammary carcinoma-derived macrophages and cancer cells for co-culture assays. STAR Protocols, 3 (4). p. 101833. ISSN 2666-1667 (In Press)

Sun, Xueqin, Klingbeil, Olaf, Lu, Bin, Wu, Caizhi, Ballon, Carlos, Ouyang, Meng, Wu, Xiaoli S, Jin, Ying, Hwangbo, Yon, Huang, Yu-Han, Somerville, Tim DD, Chang, Kenneth, Park, Jung, Chung, Taemoon, Lyons, Scott K, Shi, Junwei, Vogel, Hannes, Schulder, Michael, Vakoc, Christopher R, Mills, Alea A (December 2022) BRD8 maintains glioblastoma by epigenetic reprogramming of the p53 network. Nature. ISSN 0028-0836

Sun, Yonghao, Dong, Liang, Zhang, Ying, Lin, Da, Xu, Weize, Ke, Changxiong, Han, Linqian, Deng, Lulu, Li, Guoliang, Jackson, David, Li, Xingwang, Yang, Fang (June 2020) 3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize. Genome Biology, 21 (1). p. 143. ISSN 1474-760X

Sun, Yu-Chi, Chen, Xiaoyin, Fischer, Stephan, Lu, Shaina, Zhan, Huiqing, Gillis, Jesse, Zador, Anthony M (May 2021) Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections. Nature Neuroscience. ISSN 1097-6256

Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (2022) Conserved coexpression at single cell resolution across primate brains. (Submitted)

Svoboda, K., Ugurbil, K. (October 2003) New technologies: probing neurons and their networks - Editorial Overview. Current Opinion in Neurobiology, 13 (5). pp. 568-569. ISSN 0959-4388

Syrjänen, Johanna L, Epstein, Max, Gómez, Ricardo, Furukawa, Hiro (June 2023) Structure of human CALHM1 reveals key locations for channel regulation and blockade by ruthenium red. Nature Communications, 14 (1). p. 3821. ISSN 2041-1723 (Public Dataset)

Szadai, Zoltán, Pi, Hyun-Jae, Chevy, Quentin, Ócsai, Katalin, Albeanu, Dinu F, Chiovini, Balázs, Szalay, Gergely, Katona, Gergely, Kepecs, Adam, Rózsa, Balázs (November 2022) Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment. eLife, 11. e78815. ISSN 2050-084X

T

Tai, Y., Gallo, N. B., Wang, M., Yu, J. R., Van Aelst, L. (February 2019) Axo-axonic Innervation of Neocortical Pyramidal Neurons by GABAergic Chandelier Cells Requires AnkyrinG-Associated L1CAM. Neuron, 102 (2). pp. 267-270. ISSN 0896-6273

Takacs, E. M., Li, J., Du, C., Ponnala, L., Janick-Buckner, D., Yu, J., Muehlbauer, G. J., Schnable, P. S., Timmermans, M. C. P., Sun, Q., Nettleton, D., Scanlon, M. J. (August 2012) Ontogeny of the maize shoot apical meristem. Plant Cell, 24 (8). pp. 3219-3234.

Takao, Sumiko, Forbes, Lauren, Uni, Masahiro, Cheng, Shuyuan, Pineda, Jose Mario Bello, Tarumoto, Yusuke, Cifani, Paolo, Minuesa, Gerard, Chen, Celine, Kharas, Michael G, Bradley, Robert K, Vakoc, Christopher R, Koche, Richard P, Kentsis, Alex (February 2021) Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia. eLife, 10. pp. 1-46. ISSN 2050-084X

Tamura, T., Chiang, A. S., Ito, N., Liu, H. P., Horiuchi, J., Tully, T., Saitoe, M. (December 2003) Aging specifically impairs amnesiac-dependent memory in Drosophila. Neuron, 40 (5). pp. 1003-1011. ISSN 0896-6273

Taniguchi, H., Lu, J., Huang, Z. J. (January 2013) The spatial and temporal origin of chandelier cells in mouse neocortex. Science, 339 (6115). pp. 70-4. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Tarumoto, Y., Lin, S., Wang, J., Milazzo, J. P., Xu, Y., Lu, B., Yang, Z., Wei, Y., Polyanskaya, S., Wunderlich, M., Gray, N. S., Stegmaier, K., Vakoc, C. R. (November 2019) Salt-Inducible Kinase inhibition suppresses acute myeloid leukemia progression in vivo. Blood. ISSN 0006-4971

Tee, Sui Seng, Kim, Nathaniel, Cullen, Quinlan, Eskandari, Roozbeh, Mamakhanyan, Arsen, Srouji, Rami M, Chirayil, Rachel, Jeong, Sangmoo, Shakiba, Mojdeh, Kastenhuber, Edward R, Chen, Shuibing, Sigel, Carlie, Lowe, Scott W, Jarnagin, William R, Thompson, Craig B, Schietinger, Andrea, Keshari, Kayvan R (April 2022) Ketohexokinase-mediated fructose metabolism is lost in hepatocellular carcinoma and can be leveraged for metabolic imaging. Science Advances, 8 (14). eabm7985. ISSN 2375-2548

Teta, M., Thomas, A., Okegbe, T., Murchison, E. P., Nagy, A., Hannon, G. J., Millar, S. E. (July 2008) Dicer is required for maintenance of hair follicle stem cells in adult skin. Developmental Biology, 319 (2). p. 556. ISSN 0012-1606

Thanaj, Marjola, Mielke, Johanna, McGurk, Kathryn, Bai, Wenjia, Savioli, Nicoló, de Marvao, Antonio, Meyer, Hannah, Zeng, Lingyao, Sohler, Florian, Wilkins, Martin, Ware, James, Bender, Christian, Rueckert, Daniel, MacNamara, Aidan, Freitag, Daniel, O’Regan, Declan (2021) Genetic and environmental determinants of diastolic heart function. medRxiv. (Submitted)

Thome, J., Duman, R. S., Henn, F. A. (July 2002) Molecular aspects of antidepressive therapy. Transsynaptic effects on signal transduction, gene expression and neuronal plasticity. Nervenarzt, 73 (7). pp. 595-9. ISSN 0028-2804 (Print)0028-2804 (Linking)

Thompson, Dane A, Tsaava, Tea, Rishi, Arvind, Nadella, Sandeep, Mishra, Lopa, Tuveson, David A, Pavlov, Valentin A, Brines, Michael, Tracey, Kevin J, Chavan, Sangeeta S (2023) Optogenetic stimulation of the brainstem dorsal motor nucleus ameliorates acute pancreatitis. Frontiers in Immunology, 14. p. 1166212. ISSN 1664-3224

Tian, C., Ohlund, D., Rickelt, S., Lidstrom, T., Huang, Y., Hao, L., Zhao, R. T., Franklin, O., Bhatia, S. N., Tuveson, D. A., Hynes, R. O. (February 2020) Cancer-cell-derived matrisome proteins promote metastasis in pancreatic ductal adenocarcinoma. Cancer Res, 80 (7). pp. 1461-1474. ISSN 0008-5472

Tierney, Braden T, Kim, JangKeun, Overbey, Eliah G, Ryon, Krista A, Foox, Jonathan, Sierra, Maria, Bhattacharya, Chandrima, Damle, Namita, Najjar, Deena, Park, Jiwoon, Garcia Medina, Sebastian, Houerbi, Nadia, Meydan, Cem, Wain Hershberg, Jeremy, Qiu, Jake, Kleinman, Ashley, Al Ghalith, Gabe, MacKay, Matthew, Afshin, Evan E, Dhir, Raja, Borg, Joseph, Gatt, Christine, Brereton, Nicholas, Readhead, Ben, Beyaz, Semir, Venkateswaran, Kasthuri J, Blease, Kelly, Moreno, Juan, Boddicker, Andrew, Zhao, Junhua, Lajoie, Bryan, Scott, Ryan T, Altomare, Andrew, Kruglyak, Semyon, Levy, Shawn, Church, George, Mason, Christopher E (October 2023) Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation. (Submitted)

Tonks, Nicholas K (April 2023) Protein Tyrosine Phosphatases: Mighty oaks from little acorns grow. IUBMB Life, 75 (4). pp. 337-352. ISSN 1521-6543

Tonks, N. K. (January 2013) Protein tyrosine phosphatases - from housekeeping enzymes to master regulators of signal transduction. Febs Journal, 280 (2). pp. 346-378. ISSN 1742464X

Tost, H., Meyer-Lindenberg, A., Klein, S., Schmitt, A., Hohn, F., Tenckhoff, A., Ruf, M., Ende, G., Rietschel, M., Henn, F. A., Braus, D. F. (December 2006) D2 antidopaminergic modulation of frontal lobe function in healthy human subjects. Biol Psychiatry, 60 (11). pp. 1196-205. ISSN 0006-3223 (Print)0006-3223 (Linking)

Triplett, J. W., Pfeiffenberger, C., Yamada, J., Stafford, B. K., Sweeney, N. T., Litke, A. M., Sher, A., Koulakov, A. A., Feldheim, D. A. (November 2011) Competition is a driving force in topographic mapping. Proceedings of the National Academy of Sciences of the United States of America, 108 (47). pp. 19060-19065. ISSN 00278424

Trivedi, Gaurang, Inoue, Daichi, Chen, Cynthia, Bitner, Lillian, Chung, Young Rock, Taylor, Justin, Gönen, Mithat, Wess, Jürgen, Abdel-Wahab, Omar, Zhang, Lingbo (2019) Muscarinic acetylcholine receptor regulates self-renewal of early erythroid progenitors. Science Translational Medicine, 11 (511).

Truong, Thu H, Benner, Elizabeth A, Hagen, Kyla M, Temiz, Nuri A, Kerkvliet, Carlos Perez, Wang, Ying, Cortes-Sanchez, Emilio, Yang, Chieh-Hsiang, Trousdell, Marygrace C, Pengo, Thomas, Guillen, Katrin P, Welm, Bryan E, Dos Santos, Camila O, Telang, Sucheta, Lange, Carol A, Ostrander, Julie H (June 2021) PELP1/SRC-3-dependent regulation of metabolic PFKFB kinases drives therapy resistant ER+ breast cancer. Oncogene. ISSN 0950-9232

Tsaniras, S. C., Delinasios, G. J., Petropoulos, M., Panagopoulos, A., Anagnostopoulos, A. K., Villiou, M., Vlachakis, D., Bravou, V., Stathopoulos, G. T., Taraviras, S. (November 2019) DNA Replication Inhibitor Geminin and Retinoic Acid Signaling Participate in Complex Interactions Associated With Pluripotency. Cancer Genomics Proteomics, 16 (6). pp. 593-601. ISSN 1109-6535

Tsigankov, D. N., Koulakov, A. A. (November 2009) Optimal axonal and dendritic branching strategies during the development of neural circuitry. Front Neural Circuits, 3. p. 18. ISSN 1662-5110 (Electronic)

Tuveson, D., Clevers, H. (June 2019) Cancer modeling meets human organoid technology. Science, 364 (6444). pp. 952-955. ISSN 0036-8075

Tyekucheva, S., Yolken, R. H., McCombie, W. R., Parla, J., Kramer, M., Wheelan, S. J., Sabunciyan, S. (October 2011) Establishing the baseline level of repetitive element expression in the human cortex. BMC Genomics, 12. article number 495. ISSN 1471-2164

U

Ueda, H.R., Dodt, H.-U., Osten, P., Economo, M.N., Chandrashekar, J., Keller, P.J. (May 2020) Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy. Neuron, 106 (3). pp. 369-387. ISSN 0896-6273

Urai, Anne E, Doiron, Brent, Leifer, Andrew M, Churchland, Anne K (January 2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience. ISSN 1097-6256

Utama, Raditya, Bastian, Anja, Sadagopan, Narayanan, Jin, Ying, Antoniou, Eric, Gao, Qing, Huang, Yinghui J, Gopalakrishna-Pillai, Sailesh, Lee, Peter P, Atwal, Gurinder S (February 2019) Cell non-autonomous interactions during non-immune stromal progression in the breast tumor microenvironment. BioRxiv. (Unpublished)

V

Vasquez, J.H., Borniger, J. C. (March 2020) Neuroendocrine and Behavioral Consequences of Hyperglycemia in Cancer. Endocrinology, 161 (5). ISSN 0013-7227

Vasudevan, A., Baruah, P.S., Smith, J.C., Wang, Z., Sayles, N. M., Andrews, P., Kendall, J., Leu, J., Chunduri, N.K., Levy, D., Wigler, M., Storchova, Z., Sheltzer, J. M. (February 2020) Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. Developmental Cell, 52 (4). pp. 413-428. ISSN 1534-5807

Vasudevan, Anand, Schukken, Klaske M, Sausville, Erin L, Girish, Vishruth, Adebambo, Oluwadamilare A, Sheltzer, Jason M (February 2021) Aneuploidy as a promoter and suppressor of malignant growth. Nature Reviews Cancer, 21 (2). pp. 89-103. ISSN 1474-175X

Venkatasubramani, J.P., Subramanyam, P., Pal, R., Reddy, B.K., Srinivasan, D.J., Chattarji, S., Iossifov, I., Klann, E., Bhattacharya, S. (March 2020) N-terminal Variant Asp14Asn of the Human p70 S6 Kinase 1 Enhances Translational Signaling Causing Different Effects in Developing and Mature Neuronal Cells. Neurobiology of Learning and Memory, 171 (107203). ISSN 1074-7427

Vicanolo, Tommaso, Hidalgo, Andres, Adrover, Jose M (May 2022) Measuring Circadian Neutrophil Infiltration in Tissues by Paired Whole-Mount Tissue Clearing and Flow Cytometry. In: Methods in Molecular Biology. Springer US, pp. 265-284. ISBN 9781071622483

Vidne, M., Ahmadian, Y., Shlens, J., Pillow, J. W., Kulkarni, J., Litke, A. M., Chichilnisky, E. J., Simoncelli, E., Paninski, L. (August 2012) Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. Journal of Computational Neuroscience, 33 (1). pp. 97-121. ISSN 09295313 (ISSN)

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

W

Walker, W. H., Borniger, J. C. (June 2019) Molecular Mechanisms of Cancer-Induced Sleep Disruption. Int J Mol Sci, 20 (11). ISSN 1422-0067

Walker, W. H., Borniger, J. C., Gaudier-Diaz, M. M., Hecmarie Melendez-Fernandez, O., Pascoe, J. L., Courtney DeVries, A., Nelson, R. J. (May 2019) Acute exposure to low-level light at night is sufficient to induce neurological changes and depressive-like behavior. Mol Psychiatry. ISSN 1476-5578

Wang, Gang, Li, Jianlong, Bojmar, Linda, Chen, Haiyan, Li, Zhong, Tobias, Gabriel C, Hu, Mengying, Homan, Edwin A, Lucotti, Serena, Zhao, Fengbo, Posada, Valentina, Oxley, Peter R, Cioffi, Michele, Kim, Han Sang, Wang, Huajuan, Lauritzen, Pernille, Boudreau, Nancy, Shi, Zhanjun, Burd, Christin E, Zippin, Jonathan H, Lo, James C, Pitt, Geoffrey S, Hernandez, Jonathan, Zambirinis, Constantinos P, Hollingsworth, Michael A, Grandgenett, Paul M, Jain, Maneesh, Batra, Surinder K, DiMaio, Dominick J, Grem, Jean L, Klute, Kelsey A, Trippett, Tanya M, Egeblad, Mikala, Paul, Doru, Bromberg, Jacqueline, Kelsen, David, Rajasekhar, Vinagolu K, Healey, John H, Matei, Irina R, Jarnagin, William R, Schwartz, Robert E, Zhang, Haiying, Lyden, David (June 2023) Tumour extracellular vesicles and particles induce liver metabolic dysfunction. Nature, 618 (7964). pp. 374-382. ISSN 0028-0836 (Public Dataset)

Wang, H., Lacoche, S., Huang, L., Xue, B., Muthuswamy, S. K. (January 2013) Rotational motion during three-dimensional morphogenesis of mammary epithelial acini relates to laminin matrix assembly. Proceedings of the National Academy of Sciences of the United States of America, 110 (1). pp. 163-168. ISSN 00278424

Wang, J. X., Furukawa, H. (January 2019) Dissecting diverse functions of NMDA receptors by structural biology. Curr Opin Struct Biol, 54. pp. 34-42. ISSN 0959-440x

Wang, X., Tucciarone, J., Jiang, S., Yin, F., Wang, B. S., Wang, D., Jia, Y., Jia, X., Li, Y., Yang, T., Xu, Z., Akram, M. A., Wang, Y., Zeng, S., Ascoli, G. A., Mitra, P., Gong, H., Luo, Q., Huang, Z. J. (March 2019) Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Rep, 26 (11). 3145-3159.e5.

Wang, Y., Leonard, M. K., Snyder, D. E., Fisher, M. L., Eckert, R. L., Kaetzel, D. M. (August 2019) NME1 Drives Expansion of Melanoma Cells with Enhanced Tumor Growth and Metastatic Properties. Mol Cancer Res, 17 (8). pp. 1665-1674. ISSN 1541-7786

Wang, Bor-Shuen, Bernardez Sarria, Maria Sol, An, Xu, He, Miao, Alam, Nazia M, Prusky, Glen T, Crair, Michael C, Huang, Z Josh (February 2021) Retinal and Callosal Activity-Dependent Chandelier Cell Elimination Shapes Binocularity in Primary Visual Cortex. Neuron, 109 (3). 502-515.e7. ISSN 0896-6273

Wang, Minghui, Gallo, Nicholas B, Tai, Yilin, Li, Bo, Van Aelst, Linda (April 2021) Oligophrenin-1 moderates behavioral responses to stress by regulating parvalbumin interneuron activity in the medial prefrontal cortex. Neuron. ISSN 0896-6273

Wang, Xingang, Aguirre, Lyndsey, Rodríguez-Leal, Daniel, Hendelman, Anat, Benoit, Matthias, Lippman, Zachary B (April 2021) Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit. Nature Plants, 7 (4). pp. 419-427. ISSN 2055-026X

Wang, Zhikai, Moresco, Philip, Yan, Ran, Li, Jiayun, Gao, Ya, Biasci, Daniele, Yao, Min, Pearson, Jordan, Hechtman, Jaclyn F, Janowitz, Tobias, Zaidi, Raza M, Weiss, Matthew J, Fearon, Douglas T (January 2022) Carcinomas assemble a filamentous CXCL12-keratin-19 coating that suppresses T cell-mediated immune attack. Proceedings of the National Academy of Sciences of USA, 119 (4). e2119463119-e2119463119. ISSN 0027-8424

Wear, Emily E, Song, Jawon, Zynda, Gregory J, Mickelson-Young, Leigh, LeBlanc, Chantal, Lee, Tae-Jin, Deppong, David O, Allen, George C, Martienssen, Robert A, Vaughn, Matthew W, Hanley-Bowdoin, Linda, Thompson, William F (October 2020) Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLoS Genetics, 16 (10). e1008623. ISSN 1553-7404

Wei, Y. (2012) Eigenvalue spectra of asymmetric random matrices for multicomponent neural networks. Physical Review E , 85 (6-2).

Weiner, B. G., Posfai, A., Wingreen, N. S. (August 2019) Spatial ecology of territorial populations. Proc Natl Acad Sci U S A, 116 (36). pp. 17874-17879. ISSN 0027-8424

Wen, Qing, Zhou, Jiaqi, Tian, Congcong, Li, Xinran, Song, Guibing, Gao, Yuan, Sun, Yaping, Ma, Chiyuan, Yao, Sitong, Liang, Xiaoyan, Kang, Xing, Wang, Nan, Yao, Yuan, Wang, Hongbao, Liang, Xiaohuan, Tang, Jialin, Offer, Steven M, Lei, Xiaohua, Yu, Chuanhe, Liu, Xiangyu, Liu, Zichuan, Wang, Zhiquan, Gan, Haiyun (September 2023) Symmetric inheritance of parental histones contributes to safeguarding the fate of mouse embryonic stem cells during differentiation. Nature Genetics, 55 (9). pp. 1555-1566. ISSN 1061-4036

Wen, Q., Chklovskii, D. B. (May 2008) A cost-benefit analysis of neuronal morphology. J Neurophysiol, 99 (5). pp. 2320-8.

Westcott, Peter MK, Muyas, Francesc, Hauck, Haley, Smith, Olivia C, Sacks, Nathan J, Ely, Zackery A, Jaeger, Alex M, Rideout, William M, Zhang, Daniel, Bhutkar, Arjun, Beytagh, Mary C, Canner, David A, Jaramillo, Grissel C, Bronson, Roderick T, Naranjo, Santiago, Jin, Abbey, Patten, JJ, Cruz, Amanda M, Shanahan, Sean-Luc, Cortes-Ciriano, Isidro, Jacks, Tyler (September 2023) Mismatch repair deficiency is not sufficient to elicit tumor immunogenicity. Nature Genetics. ISSN 1061-4036

Wiede, Florian, Lu, Kun-Hui, Du, Xin, Zeissig, Mara N, Xu, Rachel, Goh, Pei Kee, Xirouchaki, Chrysovalantou E, Hogarth, Samuel J, Greatorex, Spencer, Sek, Kevin, Daly, Roger J, Beavis, Paul A, Darcy, Phillip K, Tonks, Nicholas K, Tiganis, Tony (November 2021) PTP1B is an intracellular checkpoint that limits T cell and CAR T cell anti-tumor immunity. Cancer Discovery. ISSN 2159-8274

Williams, C. D., Banta, Arthur Mangun (1931) A comparison of the regeneration of a highly functional organ with that of a regressing, functionless or slightly functional organ. The Anatomical Record, 51 (1, Sup).

Williams, Edward H, Connell, Claire M, Weaver, James MJ, Beh, Ian, Potts, Harry, Whitley, Cameron T, Bird, Nicholas, Al-Sayed, Tamer, Monaghan, Phillip J, Fehr, Martin, Cathomas, Richard, Bertelli, Gianfilippo, Quinton, Amy, Lewis, Paul, Shamash, Jonathan, Wilson, Peter, Dooley, Michael, Poole, Susan, Mark, Patrick B, Bookman, Michael A, Earl, Helena, Jodrell, Duncan, Tavaré, Simon, Lynch, Andy G, Janowitz, Tobias (December 2019) Multicenter Validation of the CamGFR Model for Estimated Glomerular Filtration Rate. JNCI Cancer Spectrum, 3 (4). pkz068. ISSN 2515-5091

Wong, Jasmine C, Perez-Mancera, Pedro A, Huang, Tannie Q, Kim, Jangkyung, Grego-Bessa, Joaquim, Del Pilar Alzamora, Maria, Kogan, Scott C, Sharir, Amnon, Keefe, Susan H, Morales, Carolina E, Schanze, Denny, Castel, Pau, Hirose, Kentaro, Huang, Guo N, Zenker, Martin, Sheppard, Dean, Klein, Ophir D, Tuveson, David A, Braun, Benjamin S, Shannon, Kevin (November 2020) KrasP34R and KrasT58I mutations induce distinct RASopathy phenotypes in mice. JCI Insight, 5 (21). ISSN 2379-3708

Wood, L., Gray, N. W., Zhou, Z. L., Greenberg, M. E., Shepherd, G. M. G. (October 2009) Synaptic Circuit Abnormalities of Motor-Frontal Layer 2/3 Pyramidal Neurons in an RNA Interference Model of Methyl-CpG-Binding Protein 2 Deficiency. J Neurosci, 29 (40). pp. 12440-12448. ISSN 0270-6474

Wu, Xiaoli S, Vakoc, Christopher R (May 2023) Made to order tuft cells by an OCA-T1 isoform switch. Science Immunology, 8 (83). eadh3123. ISSN 2470-9468

Wu, Q., Xu, F., Liu, L., Char, S. N., Ding, Y., Je, B. I., Schmelz, E., Yang, B., Jackson, D. (December 2019) The maize heterotrimeric G protein beta subunit controls shoot meristem development and immune responses. Proc Natl Acad Sci U S A, 117 (3). pp. 1799-1805. ISSN 0027-8424 (Public Dataset)

Wu, Xiaoli S, He, Xue-Yan, Ipsaro, Jonathan J, Huang, Yu-Han, Preall, Jonathan B, Ng, David, Shue, Yan Ting, Sage, Julien, Egeblad, Mikala, Joshua-Tor, Leemor, Vakoc, Christopher R (May 2022) OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage. Nature. ISSN 0028-0836

Wu, Yuan-Ting, Bennett, Hannah C, Chon, Uree, Vanselow, Daniel J, Zhang, Qingguang, Muñoz-Castañeda, Rodrigo, Cheng, Keith C, Osten, Pavel, Drew, Patrick J, Kim, Yongsoo (June 2022) Quantitative relationship between cerebrovascular network and neuronal cell types in mice. Cell Reports, 39 (12). p. 110978. ISSN 2211-1247

Wu, Yue, Berisha, Adrian, Borniger, Jeremy C (July 2022) Neuropeptides in Cancer: Friend and Foe? Advanced Biology. e2200111. ISSN 2701-0198

X

Xiao, X., Deng, H., Furlan, A., Yang, T., Zhang, X., Hwang, G. R., Tucciarone, J., Wu, P., He, M., Palaniswamy, R., Ramakrishnan, C., Ritola, K., Hantman, A., Deisseroth, K., Osten, P., Huang, Z. J., Li, B. (October 2020) A Genetically Defined Compartmentalized Striatal Direct Pathway for Negative Reinforcement. Cell, 183 (1). 211-227.e20. ISSN 0092-8674

Xiong, Xiwen, Yang, Chenyan, He, Wei-Qi, Yu, Jiahui, Xin, Yue, Zhang, Xinge, Huang, Rong, Ma, Honghui, Xu, Shaofang, Li, Zun, Ma, Jie, Xu, Lin, Wang, Qunyi, Ren, Kaiqun, Wu, Xiaoli S, Vakoc, Christopher R, Zhong, Jiateng, Zhong, Genshen, Zhu, Xiaofei, Song, Yu, Ruan, Hai-Bin, Wang, Qingzhi (September 2022) Sirtuin 6 maintains epithelial STAT6 activity to support intestinal tuft cell development and type 2 immunity. Nature Communications, 13 (1). p. 5192. ISSN 2041-1723

Y

Yaeger, Rona, Mezzadra, Riccardo, Sinopoli, Jenna, Bian, Yu, Marasco, Michelangelo, Kaplun, Esther, Gao, Yijun, Zhao, HuiYong, Paula, Arnaud Da Cruz, Zhu, Yingjie, Perez, Almudena Chaves, Chadalavada, Kalyani, Tse, Edison, Chowdhry, Sudhir, Bowker, Sydney, Chang, Qing, Qeriqi, Besnik, Weigelt, Britta, Nanjangud, Gouri J, Berger, Michael F, Der-Torossian, Hirak, Anderes, Kenna, Socci, Nicholas D, Shia, Jinru, Riely, Gregory J, Murciano-Goroff, Yonina R, Li, Bob T, Christensen, James G, Reis-Filho, Jorge S, Solit, David B, de Stanchina, Elisa, Lowe, Scott W, Rosen, Neal, Misale, Sandra (January 2023) Molecular Characterization of Acquired Resistance to KRASG12C-EGFR Inhibition in Colorectal Cancer. Cancer Discovery, 13 (1). pp. 41-55. ISSN 2159-8274

Yamamoto, K., Venida, A., Yano, J., Biancur, D.E., Kakiuchi, M., Gupta, S., Sohn, A.S.W., Mukhopadhyay, S., Lin, E.Y., Parker, S.J., Banh, R.S., Paulo, J.A., Wen, K.W., Debnath, J., Kim, G.E., Mancias, J.D., Fearon, D. T., Perera, R.M., Kimmelman, A.C. (May 2020) Autophagy Promotes Immune Evasion of Pancreatic Cancer by Degrading MHC-I. Nature, 581 (7806). pp. 100-105. ISSN 0028-0836

Yan, Ran, Moresco, Philip, Gegenhuber, Bruno, Fearon, Douglas T (June 2023) T cell-Mediated Development of Stromal Fibroblasts with an Immune-Enhancing Chemokine Profile. Cancer Immunology Research. OF1-OF11. ISSN 2326-6066

Yan, H., Li, B., Wang, J. (April 2019) Non-equilibrium landscape and flux reveal how the central amygdala circuit gates passive and active defensive responses. J R Soc Interface, 16 (153). p. 20180756. ISSN 1742-5662

Yang, Y., Zador, A. M. (October 2012) Differences in sensitivity to neural timing among cortical areas. Journal of Neuroscience, 32 (43). pp. 15142-15147. ISSN 02706474

Yang, Y. T., Wang, C. L., Van Aelst, L. (August 2012) DOCK7 interacts with TACC3 to regulate interkinetic nuclear migration and cortical neurogenesis. Nature Neuroscience, 15 (9). pp. 1201-10. ISSN 1097-6256

Yang, Huan, Lundbäck, Peter, Ottosson, Lars, Erlandsson-Harris, Helena, Venereau, Emilie, Bianchi, Marco E, Al-Abed, Yousef, Andersson, Ulf, Tracey, Kevin J (June 2021) Redox modifications of cysteine residues regulate the cytokine activity of HMGB1. Molecular Medicine, 27 (1). p. 58. ISSN 1076-1551

Yang, Huan, Zeng, Qiong, Silverman, Harold A, Gunasekaran, Manojkumar, George, Sam J, Devarajan, Alex, Addorisio, Meghan E, Li, Jianhua, Tsaava, Téa, Shah, Vivek, Billiar, Timothy R, Wang, Haichao, Brines, Michael, Andersson, Ulf, Pavlov, Valentin A, Chang, Eric H, Chavan, Sangeeta S, Tracey, Kevin J (August 2021) HMGB1 released from nociceptors mediates inflammation. Proceedings of the National Academy of Sciences of USA, 118 (33). e2102034118-e2102034118. ISSN 0027-8424

Yang, RS, Xu, F, Wang, YM, Zhong, WS, Dong, L, Shi, YN, Tang, TJ, Sheng, HJ, Jackson, D, Yang, F (December 2021) Glutaredoxins regulate maize inflorescence meristem development via redox control of TGA transcriptional activity. Nature Plants. ISSN 2055-0278

Yang, Wen-Hsuan, Qiu, Yijian, Stamatatos, Olivia, Janowitz, Tobias, Lukey, Michael J (May 2021) Enhancing the Efficacy of Glutamine Metabolism Inhibitors in Cancer Therapy. Trends in Cancer. ISSN 2405-8033

Yang, Zhaolin, Wu, Xiaoli S, Wei, Yiliang, Polyanskaya, Sofya A, Iyer, Shruti V, Jung, Moonjung, Lach, Francis P, Adelman, Emmalee R, Klingbeil, Olaf, Milazzo, Joseph P, Kramer, Melissa, Demerdash, Osama E, Chang, Kenneth, Goodwin, Sara, Hodges, Emily, McCombie, W Richard, Figueroa, Maria E, Smogorzewska, Agata, Vakoc, Christopher R (April 2021) Transcriptional silencing of ALDH2 confers a dependency on Fanconi anemia proteins in acute myeloid leukemia. Cancer Discovery. ISSN 2159-8274

Yao, M, Tudi, A, Jiang, T, An, X, Sun, Q, Li, A, Huang, ZJ, Gong, H, Li, X (April 2023) Long-range connectome of pyramidal neurons in the sensorimotor cortex. iScience, 26 (4). p. 106316. ISSN 2589-0042

Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S, Aldridge, Andrew I, Ament, Seth A, Bartlett, Anna, Behrens, M Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L, Doyle, Wayne I, Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R, Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D, Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M, Nery, Joseph R, Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K, Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C, Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R, van Velthoven, Cindy, Wang, Xinxin, White, Owen R, Huang, Z Josh, Kharchenko, Peter V, Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D, Gillis, Jesse, Macosko, Evan Z, Ren, Bing, Ecker, Joseph R, Zeng, Hongkui, Mukamel, Eran A (October 2021) A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature, 598 (7879). pp. 103-110. ISSN 0028-0836

Yazinski, Stephanie A, Westcott, Peter MK, Ong, Kelly, Pinkas, Jan, Peters, Rachel M, Weiss, Robert S (December 2009) Dual inactivation of Hus1 and p53 in the mouse mammary gland results in accumulation of damaged cells and impaired tissue regeneration. Proceedings of the National Academy of Sciences of the United States of America, 106 (50). pp. 21282-21287. ISSN 0027-8424

Yin, J. C. (August 1999) Location, location, location: the many addresses of memory formation. Proceedings of the National Academy of Sciences, 96 (18). pp. 9985-6. ISSN 0027-8424 (Print)

Yin, W., Borniger, J. C., Wang, X., Maguire, S. M., Munselle, M. L., Bezner, K. S., Tesfamariam, H. M., Garcia, A. N., Hofmann, H. A., Nelson, R. J., Gore, A. C. (November 2019) Estradiol treatment improves biological rhythms in a preclinical rat model of menopause. Neurobiol Aging, 83. pp. 1-10. ISSN 1558-1497

Yoles-Frenkel, Michal, Shea, Stephen D, Davison, Ian G, Ben-Shaul, Yoram (August 2022) The Bruce effect: Representational stability and memory formation in the accessory olfactory bulb of the female mouse. Cell Reports, 40 (8). p. 111262. ISSN 2211-1247

Yoo, Hye-Been, Moon, Jin Woo, Kim, Hwa-Ryeon, Lee, Hee Seung, Miyabayashi, Koji, Park, Chan Hee, Ge, Sabrina, Zhang, Amy, Tae, Yoo Keung, Sub, Yujin, Park, Hyun-Woo, Gee, Heon Yung, Notta, Faiyaz, Tuveson, David A, Bang, Seungmin, Kim, Mi-Young, Roe, Jae-Seok (July 2023) A TEAD2-Driven Endothelial-Like Program Shapes Basal-Like Differentiation and Metastasis of Pancreatic Cancer. Gastroenterology, 165 (1). 133-148.e17. ISSN 0016-5085

Yoshimi, A., Lin, K. T., Wiseman, D. H., Rahman, M. A., Pastore, A., Wang, B., Lee, S. C., Micol, J. B., Zhang, X. J., de Botton, S., Penard-Lacronique, V., Stein, E. M., Cho, H., Miles, R. E., Inoue, D., Albrecht, T. R., Somervaille, T. C. P., Batta, K., Amaral, F., Simeoni, F., Wilks, D. P., Cargo, C., Intlekofer, A. M., Levine, R. L., Dvinge, H., Bradley, R. K., Wagner, E. J., Krainer, A. R., Abdel-Wahab, O. (October 2019) Coordinated alterations in RNA splicing and epigenetic regulation drive leukaemogenesis. Nature, 574 (7777). pp. 273-277. ISSN 0028-0836

Yovanno, Remy A, Chou, Tsung Han, Brantley, Sarah J, Furukawa, Hiro, Lau, Albert Y (October 2022) Excitatory and inhibitory D-serine binding to the NMDA receptor. eLife, 11. e77645. ISSN 2050-084X

Yu, M., Lin, G., Arshadi, N., Kalatskaya, I., Xue, B., Haider, S., Nguyen, F., Boutros, P. C., Elson, A., Muthuswamy, L. B., Tonks, N. K., Muthuswamy, S. K. (October 2012) Expression profiling during mammary epithelial cell 3D morphogenesis identifies PTPRO as a novel regulator of morphogenesis and ErbB2 mediated transformation. Mol Cell Biol, 32 (19). pp. 3913-3924. ISSN 1098-5549 (Electronic)0270-7306 (Linking)

Yu, Allen T, Berasain, Carmen, Bhatia, Sonam, Rivera, Keith, Liu, Bodu, Rigo, Frank, Pappin, Darryl J, Spector, David L (May 2021) PHAROH lncRNA regulates Myc translation in hepatocellular carcinoma via sequestering TIAR. eLife, 10. ISSN 2050-084X

Yuan, Zuanning, Schneider, Sarah, Dodd, Thomas, Riera, A., Bai, Lin, Yan, Chunli, Magdalou, Indiana, Ivanov, Ivaylo, Stillman, Bruce, Li, Huilin, Speck, C. (July 2020) Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proceedings of the National Academy of Sciences of the United States of America, 117 (30). pp. 17747-17756. ISSN 0027-8424

Yuste, R., Hawrylycz, M., Aalling, N., Aguilar-Valles, A., Arendt, D., Arnedillo, R. A., Ascoli, G. A., Bielza, C., Bokharaie, V., Bergmann, T. B., Bystron, I., Capogna, M., Chang, Y., Clemens, A., de Kock, C. P. J., DeFelipe, J., Dos Santos, S. E., Dunville, K., Feldmeyer, D., Fiáth, R., Fishell, G. J., Foggetti, A., Gao, X., Ghaderi, P., Goriounova, N. A., Güntürkün, O., Hagihara, K., Hall, V. J., Helmstaedter, M., Herculano, S., Hilscher, M. M., Hirase, H., Hjerling-Leffler, J., Hodge, R., Huang, J., Huda, R., Khodosevich, K., Kiehn, O., Koch, H., Kuebler, E. S., Kühnemund, M., Larrañaga, P., Lelieveldt, B., Louth, E. L., Lui, J. H., Mansvelder, H. D., Marin, O., Martinez-Trujillo, J., Moradi Chameh, H., Nath, A., Nedergaard, M., Němec, P., Ofer, N., Pfisterer, U. G., Pontes, S., Redmond, W., Rossier, J., Sanes, J. R., Scheuermann, R., Serrano-Saiz, E., Steiger, J. F., Somogyi, P., Tamás, G., Tolias, A. S., Tosches, M. A., García, M. T., Vieira, H. M., Wozny, C., Wuttke, T. V., Yong, L., Yuan, J., Zeng, H., Lein, E. (August 2020) A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci, 23 (12). pp. 1456-1468. ISSN 1097-6256

Z

Zador, A. M. (August 2019) A critique of pure learning and what artificial neural networks can learn from animal brains. Nat Commun, 10 (1). p. 3770. ISSN 2041-1723

Zador, A. M., Dubnau, J., Oyibo, H. K., Zhan, H., Cao, G., Peikon, I. D. (October 2012) Sequencing the Connectome. PLoS Biology, 10 (10). ISSN 1544-9173

Zahid, Huda, Buchholz, Caroline R, Singh, Manjulata, Ciccone, Michael F, Chan, Alice, Nithianantham, Stanley, Shi, Ke, Aihara, Hideki, Fischer, Marcus, Schönbrunn, Ernst, Dos Santos, Camila O, Landry, Joseph W, Pomerantz, William CK (September 2021) New Design Rules for Developing Potent Cell-Active Inhibitors of the Nucleosome Remodeling Factor (NURF) via BPTF Bromodomain Inhibition. Journal of Medicinal Chemistry. ISSN 0022-2623

Zavadil, J., Haley, J., Kalluri, R., Muthuswamy, S. K., Thompson, E. (December 2008) Epithelial-Mesenchymal Transition. Cancer Res, 68 (23). pp. 9574-9577.

Zeisler, Zachary R, London, Liza, Janssen, William G, Fredericks, J Megan, Elorette, Catherine, Fujimoto, Atsushi, Zhan, Huiqing, Russ, Brian E, Clem, Roger L, Hof, Patrick R, Stoll, Frederic M, Rudebeck, Peter H (October 2023) Single basolateral amygdala neurons in macaques exhibit distinct connectional motifs with frontal cortex. Neuron, 111 (20). 3307-3320.e5. ISSN 0896-6273

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas A, Gieselmann, Marc A, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana A (April 2023) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. Nature Communications, 14 (1). p. 1858. ISSN 2041-1723

Zhan, L., Rosenberg, A. , Bergami, K. C., Yu, M., Xuan, Z. Y., Jaffe, A. B., Allred, C., Muthuswamy, S. K. (November 2008) Deregulation of Scribble Promotes Mammary Tumorigenesis and Reveals a Role for Cell Polarity in Carcinoma. Cell, 135 (5). pp. 865-878.

Zhang, Anqi, Zador, Anthony M (July 2022) Diversity and task-dependence of task representations in V1 during freely-moving decisions. bioRxiv. (Submitted)

Zhang, Anqi, Zador, Anthony M (December 2023) Neurons in the primary visual cortex of freely moving rats encode both sensory and non-sensory task variables. PLoS Biology, 21 (12). e3002384. ISSN 1545-7885

Zhang, Q., Chao, T. C., Patil, V. S., Qin, Y., Tiwari, S. K., Chiou, J., Dobin, A., Tsai, C. M., Li, Z., Dang, J., Gupta, S., Urdahl, K., Nizet, V., Gingeras, T. R., Gaulton, K. J., Rana, T. M. (March 2019) The long noncoding RNA ROCKI regulates inflammatory gene expression. Embo j, 38 (8). Article number e100041. ISSN 0261-4189

Zhang, Xian, Guan, Wuqiang, Yang, Tao, Furlan, Alessandro, Xiao, Xiong, Yu, Kai, An, Xu, Galbavy, William, Ramakrishnan, Charu, Deisseroth, Karl, Ritola, Kimberly, Hantman, Adam, He, Miao, Josh Huang, Z, Li, Bo (October 2021) Genetically identified amygdala-striatal circuits for valence-specific behaviors. Nature Neuroscience, 24. pp. 1586-1600. ISSN 1097-6256

Zhao, Qi, Molina-Portela, Maria Del Pilar, Parveen, Asma, Adler, Alexander, Adler, Christina, E, Hock, Wang, Wei, Ni, Min, Wei, Yi, Atwal, Gurinder, Mohrs, Markus, Thurston, Gavin, Eichten, Alexandra (November 2020) Heterogeneity and chimerism of endothelial cells revealed by single-cell transcriptome in orthotopic liver tumors. Angiogenesis, 23 (4). pp. 581-597. ISSN 0969-6970

Zhong, H., Sia, G.-M., Sato, T. R., Gray, N. W., Mao, T., Khuchua, Z., Huganir, R. L., Svoboda, K. (May 2009) Subcellular Dynamics of Type II PKA in Neurons. Neuron, 62 (3). pp. 363-374.

Zhu, Chuanmei, Liu, Lei, Crowell, Olivia, Zhao, Hui, Brutnell, Thomas P, Jackson, David, Kellogg, Elizabeth A (2021) The CLV3 Homolog in Setaria viridis Selectively Controls Inflorescence Meristem Size. Frontiers in Plant Science, 12. p. 636749. ISSN 1664-462X

Ziamtsov, I., Navlakha, S. (October 2019) Machine learning approaches to improve three basic plant phenotyping tasks using 3D point clouds. Plant Physiol. ISSN 0032-0889

Zink, M., Rapp, S., Gebicke-Haerter, P. J., Henn, F. A., Thome, J. (September 2005) Antidepressants differentially affect expression of complexin I and II RNA in rat hippocampus. Psychopharmacology (Berl), 181 (3). pp. 560-5. ISSN 0033-3158 (Print)0033-3158 (Linking)

Zito, K., Scheuss, V., Knott, G., Hill, T., Svoboda, K. (January 2009) Rapid Functional Maturation of Nascent Dendritic Spines. Neuron, 61 (2). pp. 247-258.

Zorner, B., Wolfer, D. P., Brandis, D., Kretz, O., Zacher, C., Madani, R., Grunwald, I., Lipp, H. P., Klein, R., Henn, F. A., Gass, P. (November 2003) Forebrain-specific trkB-receptor knockout mice: behaviorally more hyperactive than "depressive". Biol Psychiatry, 54 (10). pp. 972-82. ISSN 0006-3223 (Print)0006-3223 (Linking)

Zuo, Y., Yalavarthi, S., Shi, H., Gockman, K., Zuo, M., Madison, J.A., Blair, C.N., Weber, A., Barnes, B.J., Egeblad, M., Woods, R.J., Kanthi, Y., Knight, J.S. (June 2020) Neutrophil Extracellular Traps in COVID-19. JCI Insight, 5 (11). p. 138999. ISSN 2379-3708

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