Items where Subject is "plant"

A

Adam-Blondon, A. F., Alaux, M., Pommier, C., Cantu, D., Cheng, Z. M., Cramer, G. R., Davies, C., Delrot, S., Deluc, L., Di Gaspero, G., Grimplet, J., Fennell, A., Londo, J. P., Kersey, P., Mattivi, F., Naithani, S., Neveu, P., Nikolski, M., Pezzotti, M., Reisch, B. I., Topfer, R., Vivier, M. A., Ware, D., Quesneville, H. (November 2016) Towards an open grapevine information system. Horticulture Research, 3. p. 16056. ISSN 2052-7276 (Linking)

Adrion, JR, Cole, C. B., Dukler, N., Galloway, JG, Gladstein, AL, Gower, G, Kyriazis, CC, Ragsdale, AP, Tsambos, G, Baumdicker, F, Carlson, J., Cartwright, R. A., Durvasula, A, Gronau, I., Kim, BY, McKenzie, P, Messer, PW, Noskova, E, Ortega-Del Vecchyo, D., Racimo, F, Struck, TJ, Gravel, S, Gutenkunst, R. N., Lohmueller, K. E., Ralph, PL, Schrider, D. R., Siepel, A., Kelleher, J. E., Kern, A. D. (June 2020) A Community-Maintained Standard Library of Population Genetic Models. Elife, 9. ISSN 2050-084X (Electronic)2050-084X (Linking)

Aguirre, Lyndsey, Hendelman, Anat, Hutton, Samuel F, McCandlish, David M, Lippman, Zachary B (October 2023) Idiosyncratic and dose-dependent epistasis drives variation in tomato fruit size. Science, 382 (6668). pp. 315-320. ISSN 0036-8075

Ahmed, Jahed, Alaba, Oluwafemi, Ameen, Gazala, Arora, Vaishali, Arteaga-Vazquez, Mario A, Arun, Alok, Bailey-Serres, Julia, Bartley, Laura E, Bassel, George W, Bergmann, Dominique C, Bertolini, Edoardo, Bhati, Kaushal Kumar, Blanco-Touriñán, Noel, Briggs, Steven P, Brumos, Javier, Buer, Benjamin, Burlaocot, Adrien, Cervantes-Pérez, Sergio Alan, Chen, Sixue, Contreras-Moreira, Bruno, CORPAS, Francisco J, Cruz-Ramirez, Alfredo, Cuevas-Velazquez, Cesar L, Cuperus, Josh T, David, Lisa I, de Folter, Stefan, Denolf, Peter H, Ding, Pingtao, Dwyer, William P, Evans, Matthew MS, George, Nancy, Handakumbura, Pubudu P, Harrison, Maria J, Haswell, Elizabeth S, Herath, Venura, Jiao, Yuling, Jinkerson, Robert E, John, Uwe, Joshi, Sanjay, Joshi, Abhishek, Joubert, Lydia-Marie, Katam, Ramesh, Kaur, Harmanpreet, Kazachkova, Yana, Raju, Sunil K Kenchanmane, Khan, Mather A, Khangura, Rajdeep, Kumar, Ajay, Kumar, Arun, Kumar, Pankaj, Kumar, Pradeep, Lavania, Dhruv, Lew, Tedrick Thomas Salim, Lewsey, Mathew G, Lin, Chien-Yuan, Liu, Dianyi, Liu, Le, Liu, Tie, Lokdarshi, Ansul, My Luong, Ai, Macaulay, Iain C, Mahmud, Sakil, Mähönen, Ari Pekka, Malukani, Kamal Kumar, Marand, Alexandre P, Martin, Carly A, McWhite, Claire D, Mehta, Devang, Martín, Miguel Miñambres, Mortimer, Jenny C, Nikolov, Lachezar A, Nobori, Tatsuya, Nolan, Trevor M, Ogden, Aaron J, Otegui, Marisa S, Ott, Mark-Christoph, Palma, José M, Paul, Puneet, Rehman, Atique U, Romera-Branchat, Maida, Romero, Luis C, Roth, Ronelle, Sah, Saroj K, Shahan, Rachel, Solanki, Shyam, Song, Bao-Hua, Sozzani, Rosangela, Stacey, Gary, Stepanova, Anna N, Taylor, Nicolas L, Tello-Ruiz, Marcela K, Tran, Tuan M, Tripathi, Rajiv Kumar, Vadde, Batthula Vijaya Lakshmi Vadde, Varga, Tamas, Vidovic, Marija, Walley, Justin W, Wang, Zhiyong, Weizbauer, Renate A, Whelan, James, Wijeratne, Asela J, Xiang, Tingting, Xu, Shouling, Yadegari, Ramin, Yu, Houlin, Yuan, Hai Ying, Zanini, Fabio, Zhao, Feng, Zhu, Jie, Zhuang, Xiaohong, Jha, Suryatapa Ghosh, Borowsky, Alexander T, Cole, Benjamin J, Fahlgren, Noah, Farmer, Andrew, Huang, Shao-shan Carol, Karia, Purva, Libault, Marc, Provart, Nicholas J, Rice, Selena L, Saura-Sanchez, Maite, Agarwal, Pinky, Ahkami, Amir H, Anderton, Christopher R, Briggs, Steven P, Brophy, Jennifer AN, Denolf, Peter, Di Costanzo, Luigi F, Exposito-Alonso, Moises, Giacomello, Stefania, Gomez-Cano, Fabio, Kaufmann, Kerstin, Ko, Dae Kwan, Kumar, Sagar, Malkovskiy, Andrey V, Nakayama, Naomi, Obata, Toshihiro, Otegui, Marisa S, Palfalvi, Gergo, Quezada-Rodríguez, Elsa H, Singh, Rajveer, Uhrig, R Glen, Waese, Jamie, Van Wijk, Klaas, Wright, R Clay, Ehrhardt, David W, Birnbaum, Kenneth D, Rhee, Seung Y (September 2021) Vision, challenges and opportunities for a Plant Cell Atlas. eLife, 10. ISSN 2050-084X

Al-Jaber, Nabilah A, Awaad, Amani S, Moses, John E (October 2011) Review on some antioxidant plants growing in Arab world. Journal of Saudi Chemical Society, 15 (4). pp. 293-307. ISSN 1319-6103

Alfonso, Yoselin Benitez, Cantrill, Laurence, Jackson, David (2006) Plasmodesmata: Cell-Cell Channels in Plants. In: Cell-Cell Channels. Springer New York, pp. 101-112. ISBN 978-0-387-36058-4

Alonge, M., Soyk, S., Ramakrishnan, S., Wang, X., Goodwin, S., Sedlazeck, F. J., Lippman, Z. B., Schatz, M. C. (October 2019) RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biol, 20 (1). p. 224. ISSN 1474-7596 (Public Dataset)

Alonge, Michael, Lebeigle, Ludivine, Kirsche, Melanie, Jenike, Katie, Ou, Shujun, Aganezov, Sergey, Wang, Xingang, Lippman, Zachary B, Schatz, Michael C, Soyk, Sebastian (December 2022) Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing. Genome Biology, 23 (1). p. 258. ISSN 1474-7596

Altpeter, F., Springer, N. M., Bartley, L. E., Blechl, A., Brutnell, T. P., Citovsky, V., Conrad, L., Gelvin, S. B., Jackson, D., Kausch, A. P., Lemaux, P. G., Medford, J. I., Orozo-Cardenas, M., Tricoli, D., VanEck, J., Voytas, D. F., Walbot, V., Wang, K., Zhang, Z. J., Stewart, C. N. (June 2016) Advancing Crop Transformation in the Era of Genome Editing. Plant Cell, 28 (7). pp. 1510-1520. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Alves, Cristiane S, Nogueira, Fabio TS (June 2021) Plant Small RNA World Growing Bigger: tRNA-Derived Fragments, Longstanding Players in Regulatory Processes. Frontiers in Molecular Biosciences, 8. ISSN 2296-889X

Artz, Oliver, Ackermann, Amanda, Taylor, Laura, Koo, Peter K, Pedmale, Ullas V (January 2023) Light and temperature regulate m6A-RNA modification to regulate growth in plants. bioRxiv. (Submitted)

Aubert, Juliette, Bellegarde, Fanny, Oltehua-Lopez, Omar, Leblanc, Olivier, Arteaga-Vazquez, Mario A, Martienssen, Robert A, Grimanelli, Daniel (August 2022) AGO104 is a RdDM effector of paramutation at the maize b1 locus. PLoS One, 17 (8). e0273695-e0273695. ISSN 1932-6203 (Public Dataset)

Avraham, S., Tung, C. W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L. D., Stevens, P., Vincent, L., Zapata, F., Ware, D. H. (January 2008) The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res, 36 (Databa). D449-54.

Awaad, Amani S, Al-Jaber, Nabilah A, Moses, John E, El-Meligy, Reham M, Zain, Mohamed E (January 2013) Antiulcerogenic activities of the extracts and isolated flavonoids of Euphorbia cuneata Vahl. Phytotherapy Research, 27 (1). pp. 126-130. ISSN 0951-418X

Awaad, Amani S, Al-Jaber, Nabilah A, Soliman, Gamal A, Al-Outhman, Mounerah R, Zain, Mohamed E, Moses, John E, El-Meligy, Reham M (March 2012) New biological activities of Casimiroa edulis leaf extract and isolated compounds. Phytotherapy Research, 26 (3). pp. 452-457. ISSN 0951-418X

Azumi, Y., Liu, D. H., Zhao, D. Z., Li, W. X., Wang, G. F., Hu, Y., Ma, H. (June 2002) Homolog interaction during meiotic prophase I in Arabidopsis requires the SOLO DANCERS gene encoding a novel cyclin-like protein. Embo Journal, 21 (12). pp. 3081-3095. ISSN 0261-4189

B

Baerenfaller, K., Bastow, R., Beynon, J., Brady, S., Brendel, V., Donaldson, S., Dooley, R., Forster, M., Friesner, J., Gifford, D., Grotewold, E., Gutierrez, R., Huala, E., Jaiswal, P., Joshi, H., Kersey, P., Liu, L., Loraine, A., Lyons, E., May, S., Mayer, K., MacLean, D., Meyers, B., Mueller, L., Muller, R., Muller, H. M., Ouellette, F., Pires, J. C., Provart, N., Staiger, D., Stanzione, D., Taylor, J., Taylor, C., Town, C., Toyoda, T., Vaughn, M., Walsh, S., Ware, D., Weckwerth, W., Int Arabidopsis, Informatics (June 2012) Taking the Next Step: Building an Arabidopsis Information Portal. Plant Cell, 24 (6). pp. 2248-2256. ISSN 1040-4651

Bal, Arya Kumar, De, Deepesh N. (1961) Developmental changes in the submicroscopic morphology of the cytoplasmic components during microsporogenesis in Tradescantia. Developmental Biology, 3. pp. 241-254.

Banker, Howard James (1912) Type studies in the Hydnaceae - I. The genus Manina. Mycologia, 4 (5). pp. 271-278.

Banker, Howard James (September 1914) Type studies in the Hydnaceae - VII. The genera Asterodon and Hydnochaete. Mycologia, 6 (5). pp. 231-234.

Banks, J. A., Nishiyama, T., Hasebe, M., Bowman, J. L., Gribskov, M., Depamphilis, C., Albert, V. A., Aono, N., Aoyama, T., Ambrose, B. A., Ashton, N. W., Axtell, M. J., Barker, E., Barker, M. S., Bennetzen, J. L., Bonawitz, N. D., Chapple, C., Cheng, C., Correa, L. G. G., Dacre, M., Debarry, J., Dreyer, I., Elias, M., Engstrom, E. M., Estelle, M., Feng, L., Finet, C., Floyd, S. K., Frommer, W. B., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, K. G., Koehler, B., Kolukisaoglu, U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Li, Y., Litt, A., Lyons, E., Manning, G., Maruyama, T., Michael, T. P., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-roeber, B., Nelson, D. R., Obara, M., Oguri, Y., Olmstead, R. G., Onodera, N., Petersen, B. L., Pils, B., Prigge, M., Rensing, S. A., Riaño-Pachón, D. M., Roberts, A. W., Sato, Y., Scheller, H. V., Schulz, B., Schulz, C., Shakirov, E. V., Shibagaki, N., Shinohara, N., Shippen, D. E., Sørensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theiben, G., Ulvskov, P., Wakazuki, S., Weng, J., Willats, W. W. G. T., Wipf, D., Wolf, P. G., Yang, L., Zimmer, A. D., Zhu, Q., Mitros, T., Hellsten, U., Loqué, D., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E. (May 2011) The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 (6032). pp. 963-966. ISSN 00368075

Bannigan, A., Scheible, W. R., Lukowitz, W., Fagerstrom, C., Wadsworth, P., Somerville, C., Baskin, T. I. (August 2007) A conserved role for kinesin-5 in plant mitosis. Journal of Cell Science, 120 (16). pp. 2819-2827. ISSN 0021-9533

Barkan, A., Martienssen, R. A. (April 1991) Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. Proceedings of the National Academy of Sciences of the United States of America, 88 (8). pp. 3502-3506. ISSN 0027-8424

Barnes, Allison C, Rodríguez-Zapata, Fausto, Juárez-Núñez, Karla A, Gates, Daniel J, Janzen, Garrett M, Kur, Andi, Wang, Li, Jensen, Sarah E, Estévez-Palmas, Juan M, Crow, Taylor M, Kavi, Heli S, Pil, Hannah D, Stokes, Ruthie L, Knizner, Kevan T, Aguilar-Rangel, Maria R, Demesa-Arévalo, Edgar, Skopelitis, Tara, Pérez-Limón, Sergio, Stutts, Whitney L, Thompson, Peter, Chiu, Yu-Chun, Jackson, David, Muddiman, David C, Fiehn, Oliver, Runcie, Daniel, Buckler, Edward S, Ross-Ibarra, Jeffrey, Hufford, Matthew B, Sawers, Ruairidh JH, Rellán-Álvarez, Rubén (July 2022) An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time. Proceedings of the National Academy of Sciences of USA, 119 (27). e2100036119. ISSN 0027-8424

Bartlett, M. E., Williams, S. K., Taylor, Z., DeBlasio, S., Goldshmidt, A., Hall, D. H., Schmidt, R. J., Jackson, D. P., Whipple, C. J. (November 2015) The Maize PI/GLO Ortholog Zmm16/sterile tassel silky ear1 Interacts with the Zygomorphy and Sex Determination Pathways in Flower Development. Plant Cell, 27 (11). pp. 3081-3098. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Bassuner, B. M., Lam, R., Lukowitz, W., Yeung, E. C. (January 2007) Auxin and root initiation in somatic embryos of Arabidopsis. Plant Cell Reports, 26 (1). pp. 1-11. ISSN 0721-7714

Bateson, William, Saunders, Edith Rebecca, Punnett, Reginald Crundall (1906) Further experiments on inheritance in sweet peas and stocks: preliminary account. Proceedings of the Royal Society of London. Series B. Biological sciences., 77 (517). pp. 236-238.

Baulcombe, D., Huttly, A., Martienssen, R. (1987) Hormonal and development control of gene expression in wheat. Biochem Soc Trans, 15 (1). pp. 9-11. ISSN 0300-5127

Baulcombe, D., Lazarus, C., Martienssen, R. (1984) Gibberellins and gene control in cereal aleurone cells. J Embryol Exp Morphol, 83 Sup. pp. 119-135. ISSN 0022-0752

Bayer, M., Nawy, T., Giglione, C., Galli, M., Meinnel, T., Lukowitz, W. (March 2009) Paternal Control of Embryonic Patterning in Arabidopsis thaliana. Science, 323 (5920). pp. 1485-1488. ISSN 0036-8075

Bayer, P. E., Golicz, A. A., Scheben, A., Batley, J., Edwards, D. (August 2020) Plant pan-genomes are the new reference. Nat Plants, 6 (8). pp. 914-920. ISSN 2055-0278

Bell, E. M., Lin, W. C., Husbands, A. Y., Yu, L., Jaganatha, V., Jablonska, B., Mangeon, A., Neff, M. M., Girke, T., Springer, P. S. (December 2012) Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Proceedings of the National Academy of Sciences of the United States of America, 109 (51). pp. 21146-21151. ISSN 00278424

Belling, John (1931) Chiasmas in flowering plants. University of California Publications in Botany, 16 (8). pp. 311-338.

Belling, John (1931) Chromomeres of Liliaceous plants. University of California Publications in Botany, 16 (5). pp. 153-170.

Belling, John (1925) Chromosomes of Canna and of Hemerocallis. The Journal of Heredity, 16. p. 465.

Belling, John (June 1927) Configurations of bivalents of Hyacinthus with regard to segmental interchange. The Biological Bulletin, 52 (6). pp. 480-487.

Belling, John (December 1928) Contraction of chromosomes during maturation divisions in Lilium and other plants. University of California Publications in Botany, 14 (14). pp. 335-343.

Belling, John (July 1933) Crossing over and gene rearrangement in flowering plants. Genetics, 18 (4). pp. 388-413.

Belling, John (1931) Cytological investigations. In: Carnegie Institution of Washington Year Book No. 30, 1930-31. Carnegie Institution of Washington, Washington, D.C., p. 280.

Belling, John (December 1924) Detachment (elimination) of chromosomes in Cipripedium acaule. Botanical Gazette, 78 (4). p. 458.

Belling, John (1927) Diminution in number of nodes in the bivalents of Lilium. Nature, 120 (3024). p. 549.

Belling, John (1927) Forms of plant chromosomes. The Journal of Heredity, 18 (8). p. 371.

Belling, John (1928) Genes and chromomeres in flowering plants. Nature, 121 (3056). p. 831.

Belling, John (January 1925) Homologous and similar chromosomes in diploid and triploid hyacinths. Genetics, 10 (1). pp. 59-71.

Belling, John (1927) Multiple chromosomes and reduction divisions in flowering plants. Nature, 119. p. 122.

Belling, John (June 1928) Nodes and chiasmas in the bivalents of Lilium with regard to segmental interchange. The Biological Bulletin, 54 (6). pp. 465-472.

Belling, John (March 1929) Nodes and internodes of trivalents of Hyacinthus. University of California Publications in Botany, 14 (18). pp. 379-388.

Belling, John (1925) On the origin of species in flowering plants. Nature, 116. p. 279.

Belling, John (December 1925) Production of triploid and tetraploid plants. The Journal of Heredity, 16 (12). pp. 463-466.

Belling, John (1912) Second generation of the cross between velvet and lyon beans. Project Report. Florida Agricultural Experiment Station, Gainesville, FL.

Belling, John (1913) Third generation of the cross between velvet and lyon beans. Project Report. Florida Agricultural Experiment Station, Gainesville, FL.

Belling, John (June 1927) The attachments of chromosomes at the reduction division in flowering plants. Journal of Genetics, 18 (2). pp. 177-205.

Belling, John (1923) The attraction between homologous chromosomes. In: Scientific papers of the second International Congress of Eugenics : held at American Museum of Natural History, New York, September 22-28, 1921. Williams & Williams, Baltimore, pp. 84-85.

Belling, John (July 1921) The behavior of homologous chromosomes in a triploid Canna. Proceedings of the National Academy of Sciences, 7 (7). pp. 197-201.

Belling, John (September 1924) The distribution of chromosomes in the pollen-grains of a triploid hyacinth. The American Naturalist, 58 (658). pp. 440-446.

Belling, John (September 1928) A method for the study of chromosomes in pollen-mother-cells. University of California Publications in Botany, 14 (9). pp. 293-299.

Belling, John (1927) The nodes at the reduction division in bivalents of Hyacinthus. Nature, 119. p. 527.

Belling, John (July 1925) The origin of chromosomal mutations in Uvularia. Journal of Genetics, 15 (3). pp. 245-266.

Belling, John (October 1928) The ultimate chromomeres of Lilium and Aloë with regard to the numbers of genes. University of California Publications in Botany, 14 (11). pp. 307-318.

Belling, John (February 1928) A working hypothesis for segmental interchange between homologous chromosomes in flowering plants. University of California Publications in Botany, 14 (8). pp. 283-291.

Belling, John, Blakeslee, Albert Francis (1926) On the attachment of non-homologous chromosomes at the reduction division in certain 25-chromosome Daturas. Proceedings of the National Academy of Sciences, 12 (1). pp. 7-11.

Belling, John, Blakeslee, Albert Francis (July 1922) The assortment of chromosomes in triploid Daturas. The American Naturalist, 56 (645). pp. 339-346.

Belling, John, Blakeslee, Albert Francis (March 1924) The configurations and sizes of the chromosomes in the trivalents of 25-chromosome Daturas. Proceedings of the National Academy of Sciences, 10 (3). pp. 116-120.

Belling, John, Blakeslee, Albert Francis (January 1924) The distribution of chromosomes in tetraploid Daturas. The American Naturalist, 58 (654). pp. 60-70.

Belling, John, Blakeslee, Albert Francis (April 1923) The reduction division in haploid, diploid, triploid, and tetraploid daturas. Proceedings of the National Academy of Sciences, 9 (4). pp. 106-111.

Belling, John (1914) The mode of inheritance of semi-sterility in the offspring of certain hybrid plants. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 12 (5). pp. 303-342.

Bemer, M., Wolters-Arts, M., Grossniklaus, U., Angenent, G. C. (August 2008) The MADS Domain Protein DIANA Acts Together with AGAMOUS-LIKE80 to Specify the Central Cell in Arabidopsis Ovules. Plant Cell, 20 (8). pp. 2088-2101.

Benitez-Alfonso, Y., Jackson, D. P., Maule, A. (2011) Redox regulation of intercellular transport. Protoplasma, 248 (1). pp. 131-140.

Benoit, M., Drost, H. G., Catoni, M., Gouil, Q., Lopez-Gomollon, S., Baulcombe, D., Paszkowski, J. (September 2019) Environmental and epigenetic regulation of Rider retrotransposons in tomato. PLoS Genet, 15 (9). e1008370. ISSN 1553-7390

Benoit, M. (August 2020) The Great Escape: How a Plant DNA Virus Hijacks an Imprinted Host Gene to Avoid Silencing. Plant Cell, 32 (10). pp. 3051-3052. ISSN 1040-4651

Benoit, M. (April 2020) On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis. Plant Cell. ISSN 1040-4651

Benoit, M. (May 2020) Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves. Plant Cell. ISSN 1040-4651

Benoit, Matthias (January 2022) Four to the floor: Active DNA demethylation defines somatic epigenetic patterns and impacts quantitative traits. The Plant cell. ISSN 1532-298X

Benoit, Matthias (January 2022) Hot 'n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize. The Plant cell, 34 (1). pp. 497-498. ISSN 1532-298X

Benoit, Matthias (December 2020) Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean. The Plant Cell, 32 (12). pp. 3646-3647. ISSN 1040-4651

Berger, F., Cao, X. F., Chandler, V., Dennis, L., Martienssen, R., Meyers, B., Pikaard, C., Peacock, J., Richards, E., Wagner, D., Weigel, D., Colot, V., Deal, R., Dean, C., Ecker, J., Gehring, M., Gong, Z. Z., Gregory, B., Rodrigo, G., Gutierrez-Marcos, J., Hasebe, M., Hwang, I. D., Jacobsen, S., Kakutani, T., Li, J. Y., Michaels, S., Noh, Y. S., Provart, N., Vaughn, M., Comm, EPIC Planning (June 2012) Reading the Second Code: Mapping Epigenomes to Understand Plant Growth, Development, and Adaptation to the Environment. The Plant cell, 24 (6). pp. 2257-2261. ISSN 1040-4651

Bergner, Anna Dorothy, Avery, Amos G., Blakeslee, Albert Francis (October 1940) Chromosomal deficiencies in Datura stramonium, induced by colchicine treatment. American Journal of Botany, 27 (8). pp. 676-683.

Bergner, Anna Dorothy, Blakeslee, Albert Francis (1931) Chromosome configurations in intra- and inter- specific hypbrids of Datura (abstract). Fifth International Botanical Congress . International Botanical Congress, Cambridge.

Bergner, Anna Dorothy, Blakeslee, Albert Francis (January 1943) Chromosome ends in Datura Pruinosa. Proceedings of the National Academy of Sciences, 29 (1). pp. 1-7.

Bergner, Anna Dorothy, Blakeslee, Albert Francis (June 1935) Chromosome ends in Datura discolor. Proceedings of the National Academy of Sciences, 21 (6). pp. 369-374.

Bergner, Anna Dorothy, Blakeslee, Albert Francis (April 1934) Cytology of a translocation of the 1.2 chromosome in Datura. Bulletin of the Torrey Botanical Club, 61 (4). pp. 197-209.

Bergner, Anna Dorothy, Blakeslee, Albert Francis (1932) Cytology of the Ferox-quercifolia-stramonium triangle change in Datura. Proceedings of the National Academy of Sciences, 18 (2). pp. 151-159.

Bergner, Anna Dorothy, Cartledge, J. Lincoln, Blakeslee, Albert Francis (December 1934) Chromosome behavior due to a gene which prevents metaphase pairing in Datura. Cytologia, 6 (1). pp. 19-37.

Bergner, Anna Dorothy, Satina, Sophia Alexandrovna, Avery, Amos G., Blakeslee, Albert Francis (1929) Translocated Sugarloaf, a pure breeding chromosomal type in Datura induced by radium treatment (Abstract). Science, 70 (1823). p. 562.

Bergner, Anna Dorothy, Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (January 1933) Prime types in Datura. Proceedings of the National Academy of Sciences, 19 (1). pp. 103-115.

Berube, Benjamin (August 2021) Epigenetic Control of Meiotic Recombination and Drive. PhD thesis, Cold Spring Harbor Laboratory.

Bevan, M., Bancroft, I., Mewes, H. W., Martienssen, R., McCombie, R. (1999) Clearing a path through the jungle: Progress in Arabidopsis genomics. Bioessays, 21 (2). pp. 110-120. ISSN 02659247 (ISSN)

Bevan, M., Bennetzen, J. L., Martienssen, R. (April 1998) Genome studies and molecular evolution commonalities, contrasts, continuity and change in plant genomes. Current Opinion in Plant Biology, 1 (2). pp. 101-102. ISSN 1369-5266

Bevan, M., Ecker, J., Theologis, S., Federspiel, N., Davis, R., McCombie, D., Martienssen, R., Chen, E., Waterston, B., Wilson, R., Rounsley, S., Venter, C., Tabata, S., Salanoubat, M., Quetier, F., Cherry, J. M., Meinke, D. (April 1997) Objective: The complete sequence of a plant genome. Plant cell, 9 (4). pp. 476-478. ISSN 1040-4651

Birol, I., Champ, M., Cant, J. (September 2010) GENOME INFORMATICS. In: Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference on GENOME INFORMATICS, September 15–September 19, 2010, Wellcome Conference Center.

Blakeslee, Albert Francis (1932) Are freesias fragrant? The National Horticultural Magazine.

Blakeslee, Albert Francis (February 1924) Bottle grafting again. The Journal of Heredity, 15 (2). p. 54.

Blakeslee, Albert Francis (1941) Chromosomal interchanges. In: University of Pennsylvania Bicentennial Conference.

Blakeslee, Albert Francis (1938) Colchicine. The Teaching Biologist, 7 (4). p. 52.

Blakeslee, Albert Francis (1913) Conjugation in the heterogamic genus Zygorhynchus. Mycologisches Centralblatt, 2. pp. 241-244.

Blakeslee, Albert Francis (February 1917) Corn and education. The Journal of Heredity, 8 (2). pp. 51-57.

Blakeslee, Albert Francis (April 1929) Cryptic types in Datura: Due to chromosomal interchange, and their geographical distribution. The Journal of Heredity, 20 (4). pp. 177-190.

Blakeslee, Albert Francis (March 1924) Distinction between primary and secondary chromosomal mutants in Datura. Proceedings of the National Academy of Sciences, 10 (3). pp. 109-116.

Blakeslee, Albert Francis (September 1937) Dédoublement du nombre de chromosomes chez les plantes par traitement chimique. Comptes rendus des séances de l’Académie des Sciences, 205. p. 476.

Blakeslee, Albert Francis (1931) Extra chromosomes a source of variations in the jimson weed. Project Report. Smithosonian Institution, Washington, D.C..

Blakeslee, Albert Francis (May 1913) Field work on trees. The Nature Study Review, 9 (5). pp. 121-125.

Blakeslee, Albert Francis (1928) Genetics of Datura. In: Verhandlungen des V Internationalen Kongresses fur Vererbungs wissenshaft. Supplementbank I der Zeit. fur induktive Abstammungs und Vererbungslehre.

Blakeslee, Albert Francis (May 1921) The Globe, a simple trisomic mutant in Datura. Proceedings of the National Academy of Sciences, 7 (5). pp. 148-152.

Blakeslee, Albert Francis (1940) Induced evolution in plants through chromosome changes. n/a.

Blakeslee, Albert Francis (March 1934) New Jimson weeds from old chromosomes. The Journal of Heredity, 25 (3). pp. 80-108.

Blakeslee, Albert Francis (1927) Nubbin, a compound chromosomal type in Datura. Annals of the New York Academy of Sciences, 30. 1-29, plates 1.

Blakeslee, Albert Francis (January 1913) Tree study in winter. The Nature Study Review, 9 (1). pp. 13-21.

Blakeslee, Albert Francis (1913) Trees in winter: their study, planting, care, and identification. Macmillan Company, New York.

Blakeslee, Albert Francis (September 1918) Unlike reaction of different individuals to fragrance in verbena flowers. Science, 48 (1238). pp. 298-299.

Blakeslee, Albert Francis (January 1922) Variations in Datura due to changes in chromosome number. The American Naturalist, 56 (642). pp. 16-31.

Blakeslee, Albert Francis (1923) Variations in the Jimson weed (Datura stramonium) caused by differences in the number of chromosomes. In: Scientific papers of the second International Congress of Eugenics : held at American Museum of Natural History, New York, September 22-28, 1921. Williams & Williams, altimore, pp. 82-83.

Blakeslee, Albert Francis (1906) Zygospore germinations in the mucorineae. Annales Mycologici, 4 (1). 28 p., 1 plate.

Blakeslee, Albert Francis (July 1906) Zygospores and sexual strains in the common bread mould, rhizopus nigricans. Science, 24 (604). pp. 118-122.

Blakeslee, Albert Francis (April 1921) An apparent case of non-Mendelian inheritance in Datura due to a disease. Proceedings of the National Academy of Sciences, 7 (4). pp. 116-118.

Blakeslee, Albert Francis (August 1929) An attempt to analyze the composition of Nubbin, a compound (2n+1) chromosomal type in Datura (Abstract). In: International Congress of Plant Sciences, New York.

Blakeslee, Albert Francis (March 1907) The biological significance and control of sex - The nature and significance of sexual differentiation in plants. Science, 25 (636). pp. 366-384.

Blakeslee, Albert Francis (May 1910) The botanic garden as a field museum of agriculture. Science, 31 (801). pp. 658-688.

Blakeslee, Albert Francis (1921) A chemical method of distinguishing genetic types of yellow cones in Rudbeckia. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 25 (3/4). pp. 211-222.

Blakeslee, Albert Francis (February 1927) The chromosomal constitution of Nubbin, a compound (2n + 1) type in Datura. Proceedings of the National Academy of Sciences, 13 (2). pp. 79-85.

Blakeslee, Albert Francis (May 1921) The globe mutant in the jimson weed (Datura Stramonium). Genetics, 6 (3). pp. 241-264.

Blakeslee, Albert Francis (April 1921) A graft-infectious disease of datura resembling a vegetative mutation. Journal of Genetics, 11 (1). p. 17.

Blakeslee, Albert Francis (July 1927) A paradise for plant lovers. The biological station at Alto da Serra, Brazil. The Scientific Monthly, 25 (1). pp. 5-18.

Blakeslee, Albert Francis (March 1939) The present and potential service of chemistry to plant breeding. American Journal of Botany, 26 (3). pp. 163-172.

Blakeslee, Albert Francis (1932) The species problem in Datura. In: Sixth International Congress of Genetics, Ithaca, NY.

Blakeslee, Albert Francis, Avery, Amos G. (January 1941) Classification and location of genes in Datura (Abstract). Genetics, 26 (1). pp. 138-139.

Blakeslee, Albert Francis, Avery, Amos G. (November 1937) Methods of inducing chromosome doubling in plants by treatment with colchicine (Abstract). Science, 86 (2236). p. 408.

Blakeslee, Albert Francis, Avery, Amos G. (October 1934) Three genes located in the 21.22 chromosome of the Jimson weed. The Journal of Heredity, 25 (10). pp. 393-404.

Blakeslee, Albert Francis, Avery, Amos G. (November 1940) A white-flowered race of Datura from aged seed which is genetically distinct from similar white races in nature (Abstract). Science, 92 (2393). p. 415.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy (1940) Genes associated with prime types in Datura and their possible relation to the hypothesis of position effect (Abstract). Genetics, 25 (1). p. 111.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy (May 1936) A method of isolating tertiary 2n + 1 forms in Datura from prime types by use of double half chromosomes (Abstract). Science, 83 (2160). p. 486.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy (May 1935) A type in Datura with extra-chromosomal material which in inheritance resembles a recessive (Abstract). Science, 81 (2106). pp. 463-464.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy, Cartledge, J. Lincoln, Potter, James S., Satina, Sophia Alexandrovna (1929) Analysis of Datura stramonium plants grown from seeds exposed to X-rays (Abstract). The Anatomical Record , 44 (3). p. 281.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy, Satina, Sophia Alexandrovna, Cartledge, J. Lincoln, Buchholz, John Theodore (1935) Datura investigations. In: Annual Report of Department of Genetics, Carnegie Institution of Washington, Year Book No. 34, 1934-35. Carnegie Institution of Washington, Washington, D.C., pp. 37-39.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy, Satina, Sophia Alexandrovna, Cartledge, J. Lincoln, Buchholz, John Theodore (1936) Datura investigations. In: Annual Report of Department of Genetics, Carnegie Institution of Washington, Year Book No. 35, 1935-1936. Carnegie Institution of Washington, Washington, D.C., pp. 37-40.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy, Satina, Sophia Alexandrovna, Cartledge, J. Lincoln, Buchholz, John Theodore (1937) Datura investigations. In: Annual Report of Department of Genetics, Carnegie Institution of Washington, Year Book No. 36, 1936-1937. Carnegie Institution of Washington, Washington, D.C., pp. 38-44.

Blakeslee, Albert Francis, Avery, Amos G., Bergner, Anna Dorothy, Satina, Sophia Alexandrovna, Sinnott, Edmond Ware (May 1939) Induction of periclinal chimeras in Datura stramonium by colchicine treatment (Abstract). Science, 89 (2314). p. 402.

Blakeslee, Albert Francis, Avery, Amos G., Cartledge, J. Lincoln (1938) Induction of polyploids in Datura and other plants by treatment with colchicine (Abstract). Genetics, 23 (1). p. 140.

Blakeslee, Albert Francis, Avery, Billings T. (March 1917) Adzuki beans and jimson weeds. The Journal of Heredity, 8 (3). pp. 125-131.

Blakeslee, Albert Francis, Avery, Billings T. (March 1919) Mutations in the jimson weed. The Journal of Heredity, 10 (3). pp. 111-120.

Blakeslee, Albert Francis, Avery, Billings T. (1918) A vegetative reversion in Portulaca (abstract). Brooklyn Botanical Garden Memoirs, 1. p. 18.

Blakeslee, Albert Francis, Belling, John (July 1924) Chromosomal chimeras in the jimson weed. Science, 60 (1540). pp. 19-20.

Blakeslee, Albert Francis, Belling, John (May 1924) Chromosomal mutations in the jimson weed, Datura stramonium. The Journal of Heredity, 15 (5). pp. 195-205.

Blakeslee, Albert Francis, Belling, John, Farnham, M. E. (October 1920) Chromosomal duplication and Mendelian phenomena in datura mutants. Science, 52 (1347). pp. 388-390.

Blakeslee, Albert Francis, Belling, John, Farnham, Marshall E. (December 1923) Inheritance in tetraploid Daturas. Botanical Gazette, 76 (4). pp. 329-373.

Blakeslee, Albert Francis, Belling, John, Farnham, Marshall E., Bergner, Anna Dorothy (June 1922) A haploid mutant in the Jimson weed, "Datura stramonium". Science, 55 (1433). pp. 646-647.

Blakeslee, Albert Francis, Belling, John, Harris, James Arthur (September 1922) The probability established by a culture of given size that a mating is capable of producing only dominant individuals. The American Naturalist, 56 (646). pp. 458-461.

Blakeslee, Albert Francis, Bergner, Anna Dorothy, Avery, Amos G. (May 1930) Compensating extra chromosomal types in Datura and their use as testers (Abstract). Science, 71 (1846). p. 516.

Blakeslee, Albert Francis, Bergner, Anna Dorothy, Avery, Amos G. (January 1937) Distribution of chromosomal prime types in Datura stramonium (Abstract). Genetics, 22. p. 186.

Blakeslee, Albert Francis, Bergner, Anna Dorothy, Avery, Amos G. (1933) Methods of synthesizing pure-breeding types with predicted characters in the Jimson weed, Datura stramonium. Proceedings of the National Academy of Sciences, 19 (1). pp. 115-122.

Blakeslee, Albert Francis, Cartledge, J. Lincoln (July 1927) Sterility of pollen in datura. Memoirs of the Horticultural Society of New York, 3. pp. 305-312.

Blakeslee, Albert Francis, Cartledge, J. Lincoln, Welch, Donald S. (October 1921) Sexual dimorphism in Cunninghamella. Botanical Gazette, 72 (4). pp. 185-219.

Blakeslee, Albert Francis, Cleland, Ralph E. (March 1930) Circle formation in Datura and Oenothera. Proceedings of the National Academy of Sciences, 16 (3). pp. 177-183.

Blakeslee, Albert Francis, Farnham, Marshall E. (July 1923) Bottle grafting. The Journal of Heredity, 14 (4). pp. 171-173.

Blakeslee, Albert Francis, Farnham, Marshall E. (November 1923) Trisomic inheritance in the Poinsettia mutant of Datura. The American Naturalist, 57 (653). pp. 481-495.

Blakeslee, Albert Francis, Jarvis, Chester Deacon (1911) New England trees in winter. Connecticut Agricultural Experiment Station, Storrs, Connecticut.

Blakeslee, Albert Francis, Morrison, Gordon, Avery, Amos G. (May 1927) Mutations in a haploid Datura. The Journal of Heredity, 18 (6). pp. 193-199.

Blakeslee, Albert Francis, Satina, Sophia Alexandrovna, Avery, Amos G. (May 1940) Utilization of induced periclinal chimeras in determining the constitution of organs and their origin from the three germ layers in Datura (Abstract). Science, 91 (2366). p. 423.

Blakeslee, Albert Francis, Satina, Sophia Alexandrovna, Bergner, Anna Dorothy, Avery, Amos G. (1933) Primary and secondary 1n+1 types, a new unbalance in the Jimson weed (Abstract). Science, 77 (2004). p. 518.

Blakeslee, Albert Francis, Satina, Sophia Alexandrovna, Bergner, Anna Dorothy, Potter, James S., Avery, Amos G. (1930) F1's from radium-treated pollen (Abstract). The Anatomical Record, 47 (3). p. 383.

Blakeslee, Albert Francis, Warmke, Harry Earl (November 1939) Effect of induced polyploidy on doubleness and flecking in flowers of Portulaca grandiflora (Abstract). Science, 90 (2340). pp. 411-412.

Blakeslee, Albert Francis (November 1914) Corn and men. The interacting influence of heredity and environment - Movements for betterment of men, or corn, or any other living thing, one-sided unless they take both factors into account. The Journal of Heredity, 5 (11). pp. 511-518.

Blakeslee, Albert Francis (August 1914) A possible habit mutant of the sugar maple (Acer Saccharum). Torreya, 14 (8). pp. 140-143.

Blakeslee, Albert Francis, Schulze, A. F. (April 1914) A possible mutant in the bellwort (Oakesia Sessilifolia) which prevents seed formation. Science, 39 (1008). pp. 621-622.

Bogdanove, A. J., Koebnik, R., Lu, H., Furutani, A., Angiuoli, S. V., Patil, P. B., Van Sluys, M. A., Ryan, R. P., Meyer, D. F., Han, S. W., Aparna, G., Rajaram, M., Delcher, A. L., Phillippy, A. M., Puiu, D., Schatz, M. C., Shumway, M., Sommer, D. D., Trapnell, C., Benahmed, F., Dimitrov, G., Madupu, R., Radune, D., Sullivan, S., Jha, G., Ishihara, H., Lee, S. W., Pandey, A., Sharma, V., Sriariyanun, M., Szurek, B., Vera-Cruz, C. M., Dorman, K. S., Ronald, P. C., Verdier, V., Dow, J. M., Sonti, R. V., Tsuge, S., Brendel, V. P., Rabinowicz, P. D., Leach, J. E., White, F. F., Salzberg, S. L. (2011) Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology, 193 (19). pp. 5450-5464. ISSN 00219193 (ISSN)

Bolduc, N., Hake, S., Jackson, D. (2008) Dual functions of the KNOTTED1 homeodomain: sequence-specific DNA binding and regulation of cell-to-cell transport. Science Signaling, 1 (23). pe28.

Bombarely, A., Moser, M., Amrad, A., Bao, M., Bapaume, L., Barry, C. S., Bliek, M., Boersma, M. R., Borghi, L., Bruggmann, R., Bucher, M., D'Agostino, N., Davies, K., Druege, U., Dudareva, N., Egea-Cortines, M., Delledonne, M., Fernandez-Pozo, N., Franken, P., Grandont, L., Heslop-Harrison, J. S., Hintzsche, J., Johns, M., Koes, R., Lv, X., Lyons, E., Malla, D., Martinoia, E., Mattson, N. S., Morel, P., Mueller, L. A., Muhlemann, J., Nouri, E., Passeri, V., Pezzotti, M., Qi, Q., Reinhardt, D., Rich, M., Richert-Poggeler, K. R., Robbins, T. P., Schatz, M. C., Schranz, M. E., Schuurink, R. C., Schwarzacher, T., Spelt, K., Tang, H., Urbanus, S. L., Vandenbussche, M., Vijverberg, K., Villarino, G. H., Warner, R. M., Weiss, J., Yue, Z., Zethof, J., Quattrocchio, F., Sims, T. L., Kuhlemeier, C. (May 2016) Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nat Plants, 2 (6). p. 16074. ISSN 2055-0278 (Electronic)2055-0278 (Linking)

Bommert, P., Je, B. I., Goldshmidt, A., Jackson, D. (September 2013) The maize G alpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size. Nature, 502 (7472). pp. 555-558. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Bommert, P., Nagasawa, N. S., Jackson, D. (March 2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036

Bommert, P., Satoh-Nagasawa, N., Jackson, D. P., Hirano, H.Y. (January 2005) Genetics and evolution of inflorescence and flower development in grasses. Plant Cell Physiol, 46 (1). pp. 69-78. ISSN 0032-0781 (Print)

Borg, M, Jacob, Y., Susaki, D., LeBlanc, C., Buendia, D, Axelsson, E., Kawashima, T., Voigt, P., Boavida, L. C., Becker, J. D., Higashiyama, T., Martienssen, R. A., Berger, F. (June 2020) Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology, 22 (6). p. 621. ISSN 1465-7392

Borges, F., Calarco, J. P., Martienssen, R. A. (2013) Reprogramming the Epigenome in Arabidopsis Pollen. Cold Spring Harbor Symposia on Quantitative Biology, 77. pp. 1-5. ISSN 00917451 (ISSN)

Borges, F., Gardner, R., Lopes, T., Calarco, J. P., Boavida, L. C., Slotkin, R. K., Martienssen, R. A., Becker, J. D. (October 2012) FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant methods, 8 (1). p. 44. ISSN 1746-4811 (Electronic)1746-4811 (Linking)

Borges, F., Martienssen, R. A. (November 2015) The expanding world of small RNAs in plants. Nat Rev Mol Cell Biol, 16. pp. 727-741. ISSN 1471-0080 (Electronic)1471-0072 (Linking)

Borges, F., Parent, J. S., van Ex, F., Wolff, P., Martinez, G., Kohler, C., Martienssen, R. A. (February 2018) Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis. Nat Genet, 50 (2). pp. 186-192. ISSN 1061-4036

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdžić, M., Berube, B., Brooks, A., Thompson, W. F., Hanley-Bowdoin, L., Martienssen, R. A. (November 2020) Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31 (3). pp. 591-600. ISSN 0960-9822

Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M. (October 2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171 (2). 287-304.e15. ISSN 0092-8674

Boyle, B., Hopkins, N., Lu, Z. Y., Garay, J. A. R., Mozzherin, D., Rees, T., Matasci, N., Narro, M. L., Piel, W. H., McKay, S. J., Lowry, S., Freeland, C., Peet, R. K., Enquist, B. J. (January 2013) The taxonomic name resolution service: an online tool for automated standardization of plant names. BMC Bioinformatics, 14. ISSN 1471-2105

Brenner, E. D., Stevenson, D. W., McCombie, R. W., Katari, M. S., Rudd, S. A., Mayer, K. F., Palenchar, P. M., Runko, S. J., Twigg, R. W., Dai, G., Martienssen, R. A., Benfey, P. N., Coruzzi, G. M. (2003) Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology, 4 (12). R78. ISSN 1474-7596

Brink, Royal Alexander, MacGillivray, J. H., Demerec, Milislav (January 1926) Effect of the waxy gene in maize pollen,- a reply to criticisms. Genetics, 11 (1). pp. 38-40.

Brooks, C., Nekrasov, V., Lippman, Z., Van Eck, J. (September 2014) Efficient gene editing in tomato in the first generation using the CRISPR/Cas9 system. Plant Physiology, 166 (3). pp. 1292-1297. ISSN 0032-0889

Brooks, L., Strable, J., Zhang, X., Ohtsu, K., Zhou, R., Sarkar, A., Hargreaves, S., Elshire, R. J., Eudy, D., Pawlowska, T., Ware, D. H., Janick-Buckner, D., Buckner, B., Timmermans, M. C. P., Schnable, P. S., Nettleton, D., Scanlon, M. J. (May 2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5 (5). e1000476.

Bruskiewich, R., Coe, E. H., Jaiswal, P., McCouch, S., Polacco, M., Stein, L., Vincent, L., Ware, D. (April 2002) The Plant Ontology (TM) Consortium and plant ontologies. Comparative and Functional Genomics, 3 (2). pp. 137-142. ISSN 1531-6912

Buchholz, John Theodore, Blakeslee, Albert Francis (April 1927) Abnormalities in pollen-tube growth in Datura due to the gene "tricarpel". Proceedings of the National Academy of Sciences, 13 (4). pp. 242-249.

Buchholz, John Theodore, Blakeslee, Albert Francis (December 1930) Pollen tube growth and control of gametophytic selection in Cocklebur, a 25-chromosome Datura. Botanical Gazette, 90 (4). pp. 366-383.

Buchholz, John Theodore, Blakeslee, Albert Francis (July 1927) Pollen-tube behavior with reference to sterility in Datura. Memoirs of the Horticultural Society of New York, 3. pp. 245-260.

Buchholz, John Theodore, Blakeslee, Albert Francis (1930) Pollen-tube growth and seed production after radium treatment (Abstract). The Anatomical Record, 47 (3). p. 382.

Buchholz, John Theodore, Blakeslee, Albert Francis (July 1927) Pollen-tube growth at various temperatures. American Journal of Botany, 14 (7). pp. 358-369.

Buchholz, John Theodore, Blakeslee, Albert Francis (November 1929) Pollen-tube growth in crosses between balanced chromosomal types of Datura stramonium. Genetics, 14 (6). pp. 538-568.

Buchholz, John Theodore, Blakeslee, Albert Francis (January 1941) Pollen-tube growth in intra- and interspecific pollinations between balanced polyploids of Datura (Abstract). Genetics, 26 (1). p. 142.

Buchholz, John Theodore, Blakeslee, Albert Francis (1932) Pollen-tube growth in primary and secondary 2n+1 Daturas. American Journal of Botany, 19 (7). pp. 604-626.

Buchholz, John Theodore, Blakeslee, Albert Francis (March 1930) Pollen-tube growth of the primary mutant of Datura, Rolled, and its two secondaries. Proceedings of the National Academy of Sciences, 16 (3). pp. 190-195.

Buchholz, John Theodore, Blakeslee, Albert Francis (March 1930) Radium experiments with Datura. I: The identification and transmission of lethals of pollen-tube growth in F1's from radium-treated parents. The Journal of Heredity, 21 (3). pp. 119-129.

Buchholz, John Theodore, Blakeslee, Albert Francis (June 1922) Studies of the pollen tubes and abortive ovules of the Globe mutant of Datura. Science, 55 (1431). pp. 597-599.

Buchholz, John Theodore, Blakeslee, Albert Francis, Avery, Amos G. (April 1935) Pollen-tube growth of a translocation of the 1.2 chromosome in Datura. Proceedings of the National Academy of Sciences, 21 (4). pp. 208-213.

Buchholz, John Theodore, Doak, Clifton Childress, Blakeslee, Albert Francis (April 1932) Control of gametophytic selection in Datura through shortening and splicing of styles. Bulletin of the Torrey Botanical Club, 59 (3). pp. 109-118.

Buchholz, John Theodore, Williams, L. F., Blakeslee, Albert Francis (December 1935) Pollen-tube growth of ten species of Datura in interspecific pollinations. Proceedings of the National Academy of Sciences, 21 (12). pp. 651-656.

Buckler, E. S., Holland, J. B., Bradbury, P. J., Acharya, C. B., Brown, P. J., Browne, C., Ersoz, E., Flint-Garcia, S., Garcia, A., Glaubitz, J. C., Goodman, M. M., Harjes, C., Guill, K., Kroon, D. E., Larsson, S., Lepak, N. K., Li, H., Mitchell, S. E., Pressoir, G., Peiffer, J. A., Rosas, M. O., Rocheford, T. R., Romay, M. C., Romero, S., Salvo, S., Sanchez Villeda, H., da Silva, H. S., Sun, Q., Tian, F., Upadyayula, N., Ware, D. H., Yates, H., Yu, J., Zhang, Z., Kresovich, S., McMullen, M. D. (August 2009) The genetic architecture of maize flowering time. Science, 325 (5941). pp. 714-8. ISSN 1095-9203 (Electronic)

Budziszewski, G. J., Lewis, S. P., Glover, L. W., Reineke, J., Jones, G., Ziemnik, L. S., Lonowski, J., Nyfeler, B., Aux, G., Zhou, Q., McElver, J., Patton, D. A., Martienssen, R., Grossniklaus, U., Ma, H., Law, M., Levin, J. Z. (December 2001) Arabidopsis genes essential for seedling viability: Isolation of Insertional mutants and molecular cloning. Genetics, 159 (4). pp. 1765-1778. ISSN 0016-6731

Buell, C. R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Zhu, W., Wang, A., Maiti, R., Haas, B., Wortman, J., Pertea, M., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, J., Jin, S., Johri, S., Reardon, M., Webb, K., Hill, J., Moffat, K., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., De Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Yu, Y., Kim, H., Rambo, T., Currie, J., Collura, K., Kernodle-Thompson, S., Wei, F., Kudrna, D., Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Henry, D., Oates, R., Palmer, M., Pries, G., Saski, C., Simmons, J., Soderlund, C., Nelson, W., De La Bastide, M., Spiegel, L., Nascimento, L., Huang, E., Preston, R., Zutavern, T., Palmer, L., O'Haughnessy, A., Dike, S., Minx, P., Cordum, H., Wilson, R., Jin, W., Lee, H. R., Jiang, J., Jackson, S. (2005) Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium. Genome Research, 15 (9). pp. 1284-1291. ISSN 10889051 (ISSN)

Bukhari, A. I. (May 1977) Transposition of DNA sequences. Brookhaven Symp Biol (29). pp. 218-32.

Bukowski, R., Guo, X., Lu, Y., Zou, C., He, B., Rong, Z., Wang, B., Xu, D., Yang, B., Xie, C., Fan, L., Gao, S., Xu, X., Zhang, G., Li, Y., Jiao, Y., Doebley, J. F., Ross-Ibarra, J., Lorant, A., Buffalo, V., Romay, M. C., Buckler, E. S., Ware, D., Lai, J., Sun, Q., Xu, Y. (April 2018) Construction of the third generation Zea mays haplotype map. Gigascience, 7 (4). pp. 1-12. ISSN 2047-217x

Bukowski, R., Guo, X., Lu, Y., Zou, C., He, B., Rong, Z., Wang, B., Xu, D., Yang, B., Xie, C., Fan, L., Gao, S., Xu, X., Zhang, G., Li, Y., Jiao, Y., Doebley, J. F., Ross-Ibarra, J., Lorant, A., Buffalo, V., Romay, M. C., Buckler, E. S., Ware, D., Lai, J., Sun, Q., Xu, Y. (April 2018) Construction of the third-generation Zea mays haplotype map. Gigascience, 7 (4). pp. 1-12. ISSN 2047-217x

Burko, Y., Seluzicki, A., Zander, M., Pedmale, U., Ecker, J.R., Chory, J. (February 2020) Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism. Plant Cell. ISSN 1040-4651

Byrne, M., Kidney, C., Martienssen, R. (July 2004) Homeobox genes in Arabidopsis and their epigenetic regulation. Developmental Biology, 271 (2). p. 553. ISSN 0012-1606

Byrne, M. E., Groover, A. T., Fontana, J. R., Martienssen, R. A. (September 2003) Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development, 130 (17). pp. 3941-50. ISSN 0950-1991 (Print)0950-1991 (Linking)

Byrne, M. E., Kidner, C. A., Martienssen, R. A. (October 2003) Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development, 13 (5). pp. 551-7. ISSN 0959-437X

Byrne, M. E., Simorowski, J., Martienssen, R. A. (April 2002) ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development, 129 (8). pp. 1957-1965. ISSN 0950-1991

Byrne, Dennis, Scheben, Armin, Scott, John K, Webber, Bruce L, Batchelor, Kathryn L, Severn-Ellis, Anita A, Gooden, Ben, Bell, Karen L (August 2022) Genomics reveals the history of a complex plant invasion and improves the management of a biological invasion from the South African-Australian biotic exchange. Ecology and Evolution, 12 (8). e9179. ISSN 2045-7758

C

Cahn, Jonathan, Lloyd, James PB, Karemaker, Ino D, Jansen, Pascal WTC, Pflueger, Jahnvi, Duncan, Owen, Petereit, Jakob, Bogdanovic, Ozren, Millar, A Harvey, Vermeulen, Michiel, Lister, Ryan (December 2024) Characterization of DNA methylation reader proteins of Arabidopsis thaliana. Genome Research. ISSN 1088-9051 (Public Dataset)

Cain, Stanley Adair (1936) Archidiaceae. In: Moss Flora of North America North of Mexico. A. J. Grout, Newfane, Vermont.

Cain, Stanley Adair (1936) Ecological work on the Great Smokey Mountains Region. Journal of the Southern Appalachian Botanical Club, 1. p. 25.

Cain, Stanley Adair (1936) Synusiae as a basis for plant sociological field work. American Midland Naturalist, 17 (3). pp. 665-672.

Cain, Stanley Adair (1936) The composition and structure of an oak woods, Cold Spring Harbor, Long Island, with special attention to sampling methods. American Midland Naturalist, 17 (4). pp. 725-740.

Cain, Stanley Adair (1936) A plant sociological herbarium based on synusiae. Ecology, 17 (3). pp. 537-539.

Calarco, Joseph P. (2013) Chromatin Dynamics during Germline Development. PhD thesis, Cold Spring Harbor Laboratory.

Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hufnagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S. H., Childs, K. L., Sun, Y., Jiang, N., Yandell, M. (February 2014) MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations. Plant Physiol, 164 (2). pp. 513-24. ISSN 0032-0889

Canaran, P., Buckler, E. S., Glaubitz, J. C., Stein, L. D., Sun, Q., Zhao, W., Ware, D. H. (2008) Panzea: an update on new content and features. Nucleic Acids Res, 36 (Databa). D1041-3.

Cannon, S. B., McCombie, W. R., Sato, S., Tabata, S., Denny, R., Palmer, L., Katari, M., Young, N. D., Stacey, G. (December 2003) Evolution and microsynteny of the apyrase gene family in three legume genomes. Molecular Genetics and Genomics, 270 (4). pp. 347-361. ISSN 1617-4615

Canto-Pastor, A., Molla-Morales, A., Ernst, E., Dahl, W., Zhai, J., Yan, Y., Meyers, B. C., Shanklin, J., Martienssen, R. (January 2015) Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biol (Stuttg), 17 (s1). pp. 59-65. ISSN 1435-8603

Carillo, P., Feil, R., Gibon, Y., Satoh-Nagasawa, N., Jackson, D., Blasing, O. E., Stitt, M., Lunn, J. E. (June 2013) A fluorometric assay for trehalose in the picomole range. Plant methods, 9 (1). p. 21. ISSN 1746-4811

Cartledge, J. Lincoln, Blakeslee, Albert Francis (February 1934) Mutation rate increased by aging seeds as shown by pollen abortion. Proceedings of the National Academy of Sciences, 20 (2). pp. 103-110.

Cartledge, J. Lincoln, Murray, Merrit J., Blakeslee, Albert Francis (November 1935) Increased mutation rate from aged Datura pollen. Proceedings of the National Academy of Sciences, 21 (11). pp. 597-600.

Castle, William Ernest (February 1915) Selection, sugar-beets and thrips. The American Naturalist, 49 (578). pp. 121-122.

Castle, William Ernest (May 1914) An apple chimera. The Journal of Heredity, 5 (5). pp. 200-202.

Celaya, R. B., Pedmale, U. V., Liscum, E. (2009) Signaling in Plant Phototropism. In: Signaling in Plants. Springer Berlin Heidelberg, pp. 239-260. ISBN 9783540892281

Chandran, D., Scanlon, M. J., Ohtsu, K., Timmermans, M. C., Schnable, P. S., Wildermuth, M. C. (October 2015) Laser Microdissection-Mediated Isolation and In Vitro Transcriptional Amplification of Plant RNA. Curr Protoc Mol Biol, 112. 25A 3.1-25A 3.23. ISSN 1934-3647 (Electronic)1934-3647 (Linking)

Chen, H., Jackson, D., Kim, J. Y. (February 2014) Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking. Plant Signaling and Behavior, 9 (2). ISSN 1559-2316

Chen, J. P., Jiao, Y. P., Laza, H., Payton, P., Ware, D., Xin, Z. G. (November 2019) Identification of the First Nuclear Male Sterility Gene (Male-sterile 9) in Sorghum. Plant Genome, 12 (3). Article No 190020. ISSN 1940-3372

Chen, Y. H., Li, H. J., Shi, D. Q., Yuan, L., Liu, J., Sreenivasan, R., Baskar, R., Grossniklaus, U., Yang, W. C. (November 2007) The central cell plays a critical role in pollen tube guidance in Arabidopsis. Plant Cell, 19 (11). pp. 3563-3577. ISSN 1040-4651

Chen, Wenkang, Chen, Lu, Zhang, Xuan, Yang, Ning, Guo, Jianghua, Wang, Min, Ji, Shenghui, Zhao, Xiangyu, Yin, Pengfei, Cai, Lichun, Xu, Jing, Zhang, Lili, Han, Yingjia, Xiao, Yingni, Xu, Gen, Wang, Yuebin, Wang, Shuhui, Wu, Sheng, Yang, Fang, Jackson, David, Cheng, Jinkui, Chen, Saihua, Sun, Chuanqing, Qin, Feng, Tian, Feng, Fernie, Alisdair R, Li, Jiansheng, Yan, Jianbing, Yang, Xiaohong (March 2022) Convergent selection of a WD40 protein that enhances grain yield in maize and rice. Science, 375 (6587). eabg7985. ISSN 0036-8075

Chia, J. M., Song, C., Bradbury, P. J., Costich, D., de Leon, N., Doebley, J., Elshire, R. J., Gaut, B., Geller, L., Glaubitz, J. C., Gore, M., Guill, K. E., Holland, J., Hufford, M. B., Lai, J., Li, M., Liu, X., Lu, Y., McCombie, R., Nelson, R., Poland, J., Prasanna, B. M., Pyhajarvi, T., Rong, T., Sekhon, R. S., Sun, Q., Tenaillon, M. I., Tian, F., Wang, J., Xu, X., Zhang, Z., Kaeppler, S. M., Ross-Ibarra, J., McMullen, M. D., Buckler, E. S., Zhang, G., Xu, Y., Ware, D. (June 2012) Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet, 44 (7). 803-U238. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Chitwood, D. H. (2009) Patterning in Leaves via a Cascade of Small RNAs. PhD thesis, Cold Spring Harbor Laboratory.

Chitwood, D. H., Guo, M., Nogueira, F. T. S., Timmermans, M. C. P. (March 2007) Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex. Development, 134 (5). pp. 813-23. ISSN 0950-1991 (Print)

Chitwood, D. H., Timmermans, M. C. P. (September 2010) Small RNAs are on the move. Nature, 467 (7314). pp. 415-419. ISSN 0028-0836

Choi, K., Zhao, X., Tock, A. J., Lambing, C., Underwood, C. J., Hardcastle, T. J., Serra, H., Kim, J., Cho, H. S., Kim, J., Ziolkowski, P. A., Yelina, N. E., Hwang, I., Martienssen, R. A., Henderson, I. R. (April 2018) Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions. Genome Res, 28 (4). pp. 532-546. ISSN 1088-9051

Choisne, N., Demange, N., Orjeda, G., Samain, S., D'Hont, A., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., Scarpelli, C., Weissenbach, J., Salanoubat, M., Quetier, F., Singh, N. K., Mohapatra, T., Sharma, T. R., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S. K., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Dixit, R., Singh, H., Swain, S. C., Pal, S., Ragiba, M., Singh, P. K., Singhal, V., Mendiratta, S. D., Batra, K., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Vydianathan, R., Vij, S., Kapur, A., Khurana, P., Sharma, S., Khurana, J. P., Tyagi, A. K., Yuan, Q. P., Ouyang, S., Liu, J., Zhu, W., Wang, A. H., Lin, H. N., Hamilton, J., Haas, B., Wortman, J., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, B., Jin, S. H., Johri, S., Reardon, M., Vuong, H., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., de Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Buell, C. R., Yu, Y., Rambo, T., Currie, J., Collura, K., Kim, H. R., Stum, D., Wang, W. M., Kudrna, D., Mueller, C., Wing, R. A., Kramer, M., Spiegel, L., Nascimento, L., Preston, R., Zutavern, T., Palmer, L., O'Shaughnessy, A., McCombie, W. R. (September 2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biology, 3. ISSN 1741-7007

Chomet, Paul, Martienssen, Rob (September 2017) Barbara McClintock’s Final Years as Nobelist and Mentor: A Memoir. Cell, 170 (6). pp. 1049-1054. ISSN 0092-8674

Chougule, K, Tello-Ruiz, MK, Wei, S, Olson, A, Lu, Z, Kumari, S, Kumar, V, Contreras-Moreira, B, Naamati, G, Dyer, S, Papatheodorou, I, George, N, Elser, J, Naithani, S, Jaiswal, P, Ware, D (January 2024) Pan genome resources for grapevine. In: UNSPECIFIED.

Chougule, K. M., Wang, L., Stein, J. C., Wang, X., Devisetty, U. K., Klein, R. R., Ware, D. (August 2018) Improved RNA-seq Workflows Using CyVerse Cyberinfrastructure. Curr Protoc Bioinformatics. e53. ISSN 1934-3396

Christensen, S. A., Nemchenko, A., Borrego, E., Murray, I., Sobhy, I. S., Bosak, L., Deblasio, S., Erb, M., Robert, C. A., Vaughn, K. A., Herrfurth, C., Tumlinson, J., Feussner, I., Jackson, D., Turlings, T. C., Engelberth, J., Nansen, C., Meeley, R., Kolomiets, M. V. (April 2013) The maize lipoxygenase, ZmLOX10, mediates green leaf volatile, jasmonate and herbivore-induced plant volatile production for defense against insect attack. Plant Journal, 74 (1). pp. 59-73. ISSN 09607412 (ISSN)

Cibrian-Jaramillo, A., De la Torre-Barcena, J. E., Lee, E. K., Katari, M. S., Little, D. P., Stevenson, D. W., Martienssen, R. A., Coruzzi, G. M., DeSalle, R. (March 2010) Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution. Genome Biology and Evolution, 2. pp. 225-239. ISSN 1759-6653

Cibrian-Jaramillo, A., Martienssen, R. A. (2009) Darwin's "Abominable Mystery": the role of RNA interference in the evolution of flowering plants. Cold Spring Harbor Symposia on Quantitative Biology, 74. pp. 267-273. ISSN 00917451 (ISSN)

Cilia, M., Cantrill, L., van Bel, A. (January 2002) Plasmodesma 2001: on safari through the symplast. Plant Cell, 14 (1). pp. 7-10. ISSN 1040-4651 (Print)

Cipollini, M. L., Strahl, M., Gorden, N. S., Tomlinson, P., Ware, R. (June 2013) Vegetative survey of Martha's Meadow, an open limestone habitat in northwestern Georgia. Southeastern Naturalist, 12 (2). pp. 317-338. ISSN 15287092

Ciren, Danielle (February 2024) Decoding cis-regulatory control and evolution of conserved and divergent phenotypes in plants. PhD thesis, Cold Spring Harbor Laboratory.

Ciren, Danielle, Zebell, Sophia, Lippman, Zachary B (December 2023) Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator. bioRxiv. (Submitted)

Ciren, Danielle, Zebell, Sophia, Lippman, Zachary B (March 2024) Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator. PLoS Genetics, 20 (3). e1011174. ISSN 1553-7390

Claeys, H., Van Landeghem, S., Dubois, M., Maleux, K., Inzé, D. (June 2014) What Is Stress? Dose-response effects in commonly used in vitro stress assays. Plant Physiology, 165 (2). pp. 519-527. ISSN 15322548

Claeys, H., Vi, S. L., Xu, X., Satoh-Nagasawa, N., Eveland, A. L., Goldshmidt, A., Feil, R., Beggs, G. A., Sakai, H., Brennan, R. G., Lunn, J. E., Jackson, D. (April 2019) Control of meristem determinacy by trehalose 6-phosphate phosphatases is uncoupled from enzymatic activity. Nat Plants, 5 (4). pp. 352-357. ISSN 2055-0278

Clarke, Jennifer L, Cooper, Laurel D, Poelchau, Monica F, Berardini, Tanya Z, Elser, Justin, Farmer, Andrew D, Ficklin, Stephen, Kumari, Sunita, Laporte, Marie-Angélique, Nelson, Rex T, Sadohara, Rie, Selby, Peter, Thessen, Anne E, Whitehead, Brandon, Sen, Taner Z (November 2023) Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database : the journal of biological databases and curation, 2023. baad076. ISSN 1758-0463

Cleland, Ralph E., Blakeslee, Albert Francis (1930) Interaction between complexes as evidence for segmental interchange in Oenothera. Proceedings of the National Academy of Sciences, 16 (3). pp. 183-189.

Cleland, Ralph E., Blakeslee, Albert Francis (1931) Segmental interchange, the basis of chromosomal attachments in Oenothera. Cytologia, 2 (3). pp. 175-233.

Colasanti, J., Tyers, M., Sundaresan, V. (April 1991) Isolation and characterization of cDNA clones encoding a functional p34cdc2 homologue from Zea mays. Proc Natl Acad Sci U S A, 88 (8). pp. 3377-81. ISSN 0027-8424 (Print)0027-8424 (Linking)

Concia, L., Brooks, A. M., Wheeler, E., Zynda, G. J., Wear, E. E., LeBlanc, C., Song, J., Lee, T. J., Pascuzzi, P. E., Martienssen, R. A., Vaughn, M. W., Thompson, W. F., Hanley-Bowdoin, L. (March 2018) Genome-Wide Analysis of the Arabidopsis Replication Timing Program. Plant Physiol, 176 (3). pp. 2166-2185. ISSN 0032-0889

Conn, A., Chandrasekhar, A., Rongen, M. V., Leyser, O., Chory, J., Navlakha, S. (September 2019) Network trade-offs and homeostasis in Arabidopsis shoot architectures. PLoS Comput Biol, 15 (9). e1007325. ISSN 1553-734x (Public Dataset)

Conn, A., Pedmale, U. V., Chory, J., Navlakha, S. (July 2017) High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles. Cell Syst, 5 (1). 53-62.e3. ISSN 2405-4712 (Print)2405-4712

Consortium, Arabidopsis Interactome Mapping (July 2011) Evidence for Network Evolution in an Arabidopsis Interactome Map. Science, 333 (6042). pp. 601-607.

Copenhaver, G. P., Nickel, K., Kuromori, T., Benito, M. I., Kaul, S., Lin, X., Bevan, M., Murphy, G., Harris, B., Parnell, L. D., McCombie, W. R., Martienssen, R. A., Marra, M., Preuss, D. (1999) Genetic definition and sequence analysis of Arabidopsis centromeres. Science, 286 (5449). pp. 2468-2474. ISSN 00368075 (ISSN)

Corcoran, Emma Tung, LeBlanc, Chantal, Huang, Yi-Chun, Tsang, Mia Arias, Sarkiss, Anthony, Hu, Yuzhao, Pedmale, Ullas V, Jacob, Yannick (July 2022) Systematic histone H4 replacement in Arabidopsis thaliana reveals a role for H4R17 in regulating flowering time. The Plant Cell. koac211. ISSN 1040-4651

Correns, Carl E. (1906) Das Keimen der beiderlei Fruchte der Dimorphotheca pluvialis. Berichte der Deutschen Botanischen Gesellschaft, 24. pp. 174-176.

Correns, Carl E. (1908) Die Rolle der männlichen Keimzellen bei der Geschlechtsbestimmung der gynodioscischen Pflanzen. Berichte der Deutschen Botanischen Gesellschaft, 26. pp. 686-701.

Correns, Carl E. (May 1908) Die bestimmung des geschlechtes bei den pflanzen. Umschau. pp. 361-367.

Correns, Carl E. (1907) Weitere Untersuchungen uber die Geschlechtsformen polygamer blutenpflanzen und ihre beeinflussbarkeit. Jahrb. f. wissen. Botan., 45 (4). pp. 661-700.

Correns, Carl E. (1907) Zur Kenntnis der geschlechtsformen polygamer Blutenpflanzen und ihre Beeinflussbarkeit. Pringsheim's Jahrbuch Wissenschaftlich Botanik, 44. pp. 124-173.

Cranston, K. A., Hurwitz, B. L., Ware, D. H., Stein, L. D., Wing, R. A. (October 2009) Species Trees from Highly Incongruent Gene Trees in Rice. Systematic Biology, 58 (5). pp. 489-500. ISSN 1063-5157

Creasey, K. M., Martienssen, R. A. (2011) Germline Reprogramming of Heterochromatin in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 75. pp. 269-274. ISSN 00917451 (ISSN)

Creasey, K. M., Zhai, J., Borges, F., Van Ex, F., Regulski, M., Meyers, B. C., Martienssen, R. A. (March 2014) miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature, 508 (7496). pp. 411-415. ISSN 0028-0836

Creighton, H. B., McClintock, B. (March 1935) The Correlation of Cytological and Genetical Crossing-Over in Zea Mays. A Corroboration. Proc Natl Acad Sci U S A, 21 (3). pp. 148-50. ISSN 0027-8424 (Print)0027-8424 (Linking)

D

Dale, Savanah Marie, Tomaszewski, Elise, Lippman, Zachary, Van Eck, Joyce (July 2024) Engineering the future of Physalis grisea: A focus on agricultural challenges, model species status, and applied improvements. Plants People Planet. ISSN 2572-2611

Dampanaboina, L., Jiao, Y., Chen, J., Gladman, N., Chopra, R., Burow, G., Hayes, C., Christensen, S. A., Burke, J., Ware, D., Xin, Z. (October 2019) Sorghum MSD3 Encodes an omega-3 Fatty Acid Desaturase that Increases Grain Number by Reducing Jasmonic Acid Levels. Int J Mol Sci, 20 (21). ISSN 1422-0067 (Public Dataset)

Davenport, Charles Benedict (1907) Demonstrations of methods and results of pedigree breeding of plants and animals. The Boston Society for Experimental Biology and Medicine, 4. p. 147.

De, Deepesh N. (1958) Pollen tube mitosis without culture medium: metaphase arrest by acenaphthene. Stain Technology, 33 (1). pp. 57-58.

De, Deepesh N. (1957) Ultrastructure of nuclear membrane in plant cells. Experimental Cell Research, 12. pp. 181-184.

Dellaporta, S. L., Chomet, P. S., Mottinger, J. P., Wood, J. A., Yu, S. M., Hicks, J. B. (1984) Endogenous transposable elements associated with virus infection in maize. Cold Spring Harbor Symposia on Quantitative Biology, 49. pp. 321-328. ISSN 00917451 (ISSN)

Demerec, Milislav (April 1931) Behaviour of two mutable genes of Delphinium ajacis. Journal of Genetics, 24 (2). pp. 179-193.

Demerec, Milislav (1930) The behaviour of two mutable genes of Delphinium ajacis (Abstract). In: Fifth International Botanical Congress.

Deng, Cecilia H, Naithani, Sushma, Kumari, Sunita, Cobo-Simón, Irene, Quezada-Rodríguez, Elsa H, Skrabisova, Maria, Gladman, Nick, Correll, Melanie J, Sikiru, Akeem Babatunde, Afuwape, Olusola O, Marrano, Annarita, Rebollo, Ines, Zhang, Wentao, Jung, Sook (December 2023) Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences. Database : the journal of biological databases and curation, 2023. ISSN 1758-0463

Dennenmoser, S., Sedlazeck, F. J., Schatz, M. C., Altmuller, J., Zytnicki, M., Nolte, A. W. (December 2018) Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish. Mol Ecol, 28 (6). pp. 1491-1505. ISSN 0962-1083

Devos, Katrien M, Qi, Peng, Bahri, Bochra A, Gimode, Davis M, Jenike, Katharine, Manthi, Samuel J, Lule, Dagnachew, Lux, Thomas, Martinez-Bello, Liliam, Pendergast, Thomas H, Plott, Chris, Saha, Dipnarayan, Sidhu, Gurjot S, Sreedasyam, Avinash, Wang, Xuewen, Wang, Hao, Wright, Hallie, Zhao, Jianxin, Deshpande, Santosh, de Villiers, Santie, Dida, Mathews M, Grimwood, Jane, Jenkins, Jerry, Lovell, John, Mayer, Klaus FX, Mneney, Emmarold E, Ojulong, Henry F, Schatz, Michael C, Schmutz, Jeremy, Song, Bo, Tesfaye, Kassahun, Odeny, Damaris A (June 2023) Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nature Communications, 14 (1). p. 3694. ISSN 2041-1723

Dharmawardhana, P., Ren, L. Y., Amarasinghe, V., Monaco, M., Thomason, J., Ravenscroft, D., McCouch, S., Ware, D., Jaiswal, P. (May 2013) A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress. Rice, 6 (1). pp. 1-15. ISSN 1939-8425

Ding, D., Zhang, L., Wang, H., Liu, Z., Zhang, Z., Zheng, Y. (January 2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot, 103 (1). pp. 29-38.

Dong, O. X., Ao, K., Xu, F., Johnson, K. C. M., Wu, Y., Li, L., Xia, S., Liu, Y., Huang, Y., Rodriguez, E., Chen, X., Chen, S., Zhang, Y., Petersen, M., Li, X. (August 2018) Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases. Nat Plants, 4 (9). pp. 699-710. ISSN 2055-0278

Downs, G. S., Liseron-Monfils, C., Lukens, L. N. (March 2014) Regulatory motifs identified from a maize developmental coexpression network. Genome, 57 (3). pp. 181-184. ISSN 0831-2796

Du, Yanfang, Lunde, China, Li, Yunfu, Jackson, David, Hake, Sarah, Zhang, Zuxin (February 2021) Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize. Proceedings of the National Academy of Sciences of USA, 118 (7). e2019218118-e2019218118. ISSN 0027-8424

Dubois, M., Van den Broeck, L., Claeys, H., Van Vlierberghe, K., Matsui, M., Inze, D. (September 2015) The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis. Plant Physiol, 169 (1). pp. 166-79. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Dunn, P. P., Packman, L. C., Pappin, D. J., Gray, J. C. (February 1988) N-terminal amino acid sequence analysis of the subunits of pea photosystem I. Febs Letters, 228 (1). pp. 157-61. ISSN 0014-5793

E

Eigsti, Orie J. (1936) Cytological studies in the Resedaceae. Botanical Gazette, 98 (2). p. 363.

Eigsti, Orie J. (1937) Pollen tube studies in Reseda species (Abstract). Genetics, 22 (1). pp. 191-192.

Elbl, Paula M, de Souza, Diego T, Rosado, Daniele, de Oliveira, Leandro F, Navarro, Bruno V, Matioli, Sergio R, Floh, Eny IS (January 2022) Building an embryo: An auxin gene toolkit for zygotic and somatic embryogenesis in Brazilian pine. Gene, 817. p. 146168. ISSN 0378-1119

Esmon, C. A., Pedmale, U. V., Liscum, E. (2005) Plant tropisms: providing the power of movement to a sessile organism. Int J Dev Biol, 49 (5-6). pp. 665-74. ISSN 0214-6282 (Print)0214-6282

Eveland, A. L., Jackson, D. P. (May 2012) Sugars, signalling, and plant development. Journal of Experimental Botany, 63 (9). pp. 3367-3377. ISSN 0022-0957

F

Fahlgren, Noah, Kapoor, Muskan, Yordanova, Galabina, Papatheodorou, Irene, Waese, Jamie, Cole, Benjamin, Harrison, Peter, Ware, Doreen, Tickle, Timothy, Paten, Benedict, Burdett, Tony, Elsik, Christine G, Tuggle, Christopher K, Provart, Nicholas J (October 2022) Toward a Data Infrastructure for the Plant Cell Atlas. Plant Physiology. ISSN 1532-2548

Falcone Ferreyra, M. L., Casas, M. I., Questa, J. I., Herrera, A. L., Deblasio, S., Wang, J., Jackson, D., Grotewold, E., Casati, P. (2012) Evolution and expression of tandem duplicated maize flavonol synthase genes. Frontiers in Plant Science, 3. p. 101. ISSN 1664-462x

Fang, Y., Spector, D. L. (2010) BiFC imaging assay for plant protein-protein interactions. Cold Spring Harbor Protocols, 2010 (2). ISSN 1559-6095

Fang, Y., Spector, D. L. (2010) Four-dimensional imaging of plant cells during the cell cycle. Cold Spring Harbor Protocols, 2010 (2). ISSN 1559-6095

Fang, Y., Spector, D. L. (May 2007) Identification of Nuclear Dicing Bodies Containing Proteins for MicroRNA Biogenesis in Living Arabidopsis Plants. Current Biology, 17 (9). pp. 818-823. ISSN 0960-9822 (Print)

Fang, Y., Spector, D. L. (2010) Live cell imaging of plants. Cold Spring Harbor Protocols, 2010 (2). ISSN 1559-6095

Fano, Ugo, Marinelli, L. D. (1943) Note on the time intensity factor in radiobiology. Proceedings of the National Academy of Sciences, 29 (2). pp. 59-66.

Ferrandiz, C., Gu, Q., Martienssen, R., Yanofsky, M. F. (February 2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development, 127 (4). pp. 725-734. ISSN 0950-1991

Fichtenbauer, D., Xu, X. M., Jackson, D., Kragler, F. (March 2012) The chaperonin CCT8 facilitates spread of tobamovirus infection. Plant Signaling & Behavior, 7 (3). pp. 318-21. ISSN 1559-2316

Fields, Peter D, Waneka, Gus, Naish, Matthew, Schatz, Michael C, Henderson, Ian R, Sloan, Daniel B (April 2022) Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome. Genome Biology and Evolution, 14 (5). evac059. ISSN 1759-6653

Flanagan, C. A., Hu, Y., Ma, H. (August 1996) Specific expression of the AGL1 MADS-box gene suggests regulatory functions in Arabidopsis gynoecium and ovule development. Plant Journal, 10 (2). pp. 343-53. ISSN 0960-7412

Flanagan, C. A., Ma, H. (January 1993) Agl1 and Agl2, 2 Agamous-Related Mads-Box Genes, Are Differentially Expressed During Flower Development. Journal of Cellular Biochemistry, 53 (S17B). p. 14. ISSN 0730-2312

Friml, Jiří, Benfey, Philip, Benková, Eva, Bennett, Malcolm, Berleth, Thomas, Geldner, Niko, Grebe, Markus, Heisler, Marcus, Hejátko, Jan, Jürgens, Gerd, Laux, Thomas, Lindsey, Keith, Lukowitz, Wolfgang, Luschnig, Christian, Offringa, Remko, Scheres, Ben, Swarup, Raanjan, Torres-Ruiz, Ramón, Weijers, Dolf, Zažímalová, Eva (2006) Apical-basal polarity: Why plant cells don't standon their heads. Trends in Plant Science, 11 (1). pp. 12-14. ISSN 13601385

G

Gager, Charles Stuart, Blakeslee, Albert Francis (February 1927) Chromosome and gene mutations in Datura following exposure to radium rays. Proceedings of the National Academy of Sciences, 13 (2). pp. 75-79.

Gallavotti, A., Barazesh, S., Malcomber, S., Hall, D., Jackson, D. P., Schmidt, R. J., McSteen, P. (2008) sparse inflorescence1 encodes a monocot-specific YUCCA-like gene required for vegetative and reproductive development in maize. Proceedings of the National Academy of Sciences of the United States of America, 105 (39). pp. 15196-201. ISSN 0027-8424

Gaudinier, A., Rodriguez-Medina, J., Zhang, L., Olson, A., Liseron-Monfils, C., Bagman, A. M., Foret, J., Abbitt, S., Tang, M., Li, B., Runcie, D. E., Kliebenstein, D. J., Shen, B., Frank, M. J., Ware, D., Brady, S. M. (October 2018) Transcriptional regulation of nitrogen-associated metabolism and growth. Nature, 563 (7730). pp. 259-264. ISSN 0028-0836

Gendrel, A. V., Lippman, Z., Yordan, C., Colot, V., Martienssen, R. A. (September 2002) Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science, 297 (5588). pp. 1871-1873. ISSN 0036-8075

Gill, B. S., Appels, R., Botha-Oberholster, A. M., Buell, C. R., Bennetzen, J. L., Chalhoub, B., Chumley, F., Dvořák, J., Iwanaga, M., Keller, B., Li, W., McCombie, W. R., Ogihara, Y., Quetier, F., Sasaki, T. (2004) A workshop report on wheat genome sequencing: International genome research on wheat consortium. Genetics, 168 (2). pp. 1087-1096. ISSN 00166731 (ISSN)

Gladman, Nicholas, Kumari, Sunita, Fahey, Audrey, Regulski, Michael, Ware, Doreen (September 2024) GRAS Family Transcription Factor Binding Behaviors in Sorghum bicolor, Oyrza, and Maize. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Gladman, N., Jiao, Y., Lee, Y. K., Zhang, L., Chopra, R., Regulski, M., Burow, G., Hayes, C., Christensen, S. A., Dampanaboina, L., Chen, J., Burke, J., Ware, D., Xin, Z. (October 2019) Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module. Int J Mol Sci, 20 (19). ISSN 1422-0067

Gladman, Nicholas, Goodwin, Sara, Chougule, Kapeel, Richard McCombie, William, Ware, Doreen (January 2023) Era of gapless plant genomes: innovations in sequencing and mapping technologies revolutionize genomics and breeding. Current Opinion in Biotechnology, 79. p. 102886. ISSN 0958-1669

Gladman, Nicholas, Olson, Andrew, Wei, Sharon, Chougule, Kapeel, Lu, Zhenyuan, Tello-Ruiz, Marcela, Meijs, Ivar, Van Buren, Peter, Jiao, Yinping, Wang, Bo, Kumar, Vivek, Kumari, Sunita, Zhang, Lifang, Burke, John, Chen, Junping, Burow, Gloria, Hayes, Chad, Emendack, Yves, Xin, Zhanguo, Ware, Doreen (January 2022) SorghumBase: a web-based portal for sorghum genetic information and community advancement. Planta: an international journal of plant biology, 255 (2). p. 35. ISSN 0032-0935

Goff, S. A, Vaughn, M., McKay, S., Lyons, E., Stapleton, A. E, Gessler, D. , Matasci, N., Wang, L., Hanlon, M., Lenards, A., Muir, A., Merchant, N., Lowry, S., Mock, S., Helmke, M., Kubach, A., Narro, M., Hopkins, N., Micklos, D., Hilgert, U., Gonzales, M, Jordan, C., Skidmore, E., Dooley, R., Cazes, J., McLay, R., Lu, Z., Pasternak, S., Koesterke, L., Piel, W. H., Grene, R., Noutsos, C., Gendler, K., Feng, X., Tang, C., Lent, M., Kim, S. J., Kvilekval, K., Manjunath, B.S., Tannen, V., Stamatakis, A., Sanderson, M. J., Welch, S. M., Cranston, K. , Soltis, P. , Soltis, D., O'Meara, B., Ane, C., Brutnell, T., Kleibenstein, D. J., White, J. W., Leebens-Mack, J., Donoghue, M. J., Spalding, E. P., Vision, T. J., Myers, C. R., Lowenthal, D., Enquist, B. J., Boyle, B., Akoglu, A., Andrews, G., Ram, S., Ware, D., Stein, L., Stanzione, D. (2011) The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science, 2. ISSN 1664-462X

Golicz, A. A., Bayer, P. E., Barker, G. C., Edger, P. P., Kim, H., Martinez, P. A., Chan, C. K., Severn-Ellis, A., McCombie, W. R., Parkin, I. A., Paterson, A. H., Pires, J. C., Sharpe, A. G., Tang, H., Teakle, G. R., Town, C. D., Batley, J., Edwards, D. (November 2016) The pangenome of an agronomically important crop plant Brassica oleracea. Nat Commun, 7. p. 13390. ISSN 2041-1723 (Electronic)2041-1723 (Linking) (Public Dataset)

Gore, M. A., Chia, J. M., Elshire, R. J., Sun, Q., Ersoz, E. S., Hurwitz, B. L., Peiffer, J. A., McMullen, M. D., Grills, G. S., Ross-Ibarra, J., Ware, D. H., Buckler, E. S. (November 2009) A first-generation haplotype map of maize. Science, 326 (5956). pp. 1115-1117. ISSN 0036-8075

Gortner, Ross Aiken (April 1918) Book Review: The anthocyanin pigments of plants. Science, 47 (1217). pp. 418-419.

Gortner, Ross Aiken (September 1913) Review of Haas and Hill's "An introduction to the chemistry of plant products". Science, 38 (977). pp. 407-408.

Gortner, Ross Aiken (January 1917) The organic matter of the soil: III. On the production of humus from manures. Soil Science, 3 (1). pp. 1-8.

Gortner, Ross Aiken, Doherty, Everett H. (May 1918) Hydration capacity of gluten from "strong" and "weak" flours. Journal of Agricultural Research, 13 (8). pp. 389-418.

Gortner, Ross Aiken, Harris, James Arthur (February 1914) Notes on the technique of the determination of the depression of the freezing point of vegetable saps. The Plant World, 17 (2). pp. 49-53.

Gortner, Ross Aiken, Harris, James Arthur (January 1913) On a possible relationship between the structural peculiarities of normal and teratological fruits of Passiflora gracilis and some physico-chemical properties of their expressed juices. Bulletin of the Torrey Botanical Club, 40 (1). pp. 27-34.

Gortner, Ross Aiken, Harris, James Arthur (January 1914) On axial abscission in Impatiens sultani as the result of traumatic stimuli. American Journal of Botany, 1 (1). pp. 48-50.

Gortner, Ross Aiken, Lawrence, John Vincent, Harris, James Arthur (1916) The extraction of sap from plant tissues by pressure. The Biochemical Bulletin, 5 (20). pp. 139-142.

Gortner, Ross Aiken, Shaw, William M. (February 1917) The organic matter of the soil: IV. Some data on humus-phosphoric acid. Soil Science, 3 (2). pp. 99-111.

Grativol, C., Regulski, M., Bertalan, M., McCombie, W. R., da Silva, F. R., Zerlotini Neto, A., Vicentini, R., Farinelli, L., Hemerly, A. S., Martienssen, R. A., Ferreira, P. C. G. (July 2014) Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum. Plant Journal, 79 (1). pp. 162-172. ISSN 09607412

Griesbach, R. J., Malmberg, R. L., Carlson, P. S. (1982) An Improved Technique for the Isolation of Higher-Plant Chromosomes. Plant Science Letters, 24 (1). pp. 55-60.

Groover, A. T., Fontana, J. R., Arroyo, J. M., Yordan, C., McCombie, W. R., Martienssen, R. A. (2003) Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiology, 132 (2). pp. 698-708. ISSN 00320889 (ISSN)

Groover, A. T., Martienssen, R. M. (June 2000) Identifying genes involved in pattern formation using Arabidopsis genetraps. Developmental Biology, 222 (1). p. 226. ISSN 0012-1606

Grosjean, Nicolas, Zhang, Lifang, Kumaran, Desigan, Xie, Meng, Fahey, Audrey, Santiago, Kassandra, Hu, Fangle, Regulski, Michael, Blaby, Ian K, Ware, Doreen, Blaby-Haas, Crysten E (October 2024) Functional diversification within the heme-binding split-barrel family. Journal of Biological Chemistry. p. 107888. ISSN 0021-9258 (Public Dataset)

Grotewold, E., Athma, P., Peterson, T. (June 1991) Alternatively spliced products of the maize P gene encode proteins with homology to the DNA-binding domain of myb-like transcription factors. Proc Natl Acad Sci U S A, 88 (11). pp. 4587-91. ISSN 0027-8424 (Print)0027-8424 (Linking)

Grout, Abel Joel (1936) Moss flora of North America North of Mexico. A. J. Grout, Newfane, Vermont.

Gruntman, E., Qi, Y., Slotkin, R. K., Roeder, T., Martienssen, R. A., Sachidanandam, R. (September 2008) Kismeth: analyzer of plant methylation states through bisulfite sequencing. BMC bioinformatics, 9. p. 371. ISSN 1471-2105 (Electronic)1471-2105 (Linking)

Gu, Q., Ferrandiz, C., Yanofsky, M. F., Martienssen, R. (April 1998) The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development. Development, 125 (8). pp. 1509-1517. ISSN 0950-1991

Guillotin, Bruno, Rahni, Ramin, Passalacqua, Michael, Mohammed, Mohammed Ateequr, Xu, Xiaosa, Raju, Sunil Kenchanmane, Ramírez, Carlos Ortiz, Jackson, David, Groen, Simon C, Gillis, Jesse, Birnbaum, Kenneth D (May 2023) A pan-grass transcriptome reveals patterns of cellular divergence in crops. Nature, 617 (7962). pp. 785-791. ISSN 0028-0836

Guo, M., Thomas, J., Collins, G. A., Timmermans, M. C. P. (January 2008) Direct Repression of KNOX Loci by the ASYMMETRIC LEAVES1 Complex of Arabidopsis. Plant Cell, 20 (1). pp. 48-58.

Gupta, Parul, Naithani, Sushma, Tello-Ruiz, Marcela Karey, Chougule, Kapeel, D’Eustachio, Peter, Fabregat, Antonio, Jiao, Yinping, Keays, Maria, Lee, Young Koung, Kumari, Sunita, Mulvaney, Joseph, Olson, Andrew, Preece, Justin, Stein, Joshua, Wei, Sharon, Weiser, Joel, Huerta, Laura, Petryszak, Robert, Kersey, Paul, Stein, Lincoln D., Ware, Doreen, Jaiswal, Pankaj (November 2016) Gramene Database: Navigating Plant Comparative Genomics Resources. Current Plant Biology, 7-8. pp. 10-15. ISSN 2214-6628

Gutiérrez, R. A., Stokes, T. L., Thum, K., Xu, X., Obertello, M., Katari, M. S., Tanurdzic, M., Dean, A., Nero, D. C., McClung, C. R., Coruzzi, G. M. (March 2008) Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci U S A, 105 (12). pp. 4939-4944. ISSN 0027-8424

H

Hake, S, Jackson, D (October 1995) Genetic and molecular analysis of patterning in plant development. ASGSB bulletin : publication of the American Society for Gravitational and Space Biology, 8 (2). pp. 29-37. ISSN 0898-4697

Han, C. D., Coe, E. H., Martienssen, R. A. (1992) Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. EMBO J, 11 (11). pp. 4037-4046. ISSN 0261-4189

Han, C. D., Derby, R. J., Schnable, P. S., Martienssen, R. A. (1995) Characterization of the plastids affected by class-ii albino mutations of maize at the morphological and transcript levels. Maydica, 40 (1). pp. 13-22. ISSN 0025-6153

Han, J. J., Jackson, D., Martienssen, R. (July 2012) Pod corn is caused by rearrangement at the Tunicate1 locus. The Plant cell, 24 (7). pp. 2733-44. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Harris, James Arthur (June 1906) Apparently imparipinnate leaves in cassia. The Plant World, 9 (6). pp. 139-142.

Harris, James Arthur (December 1912) Biometric data on the inflorescence and fruit of Crinum longifolium. Missouri Botanical Garden Annual Report, 1912. pp. 75-99.

Harris, James Arthur (August 1917) Biometric studies on the somatic and genetic physiology of the sugar beet. The American Naturalist, 51 (608). pp. 507-512.

Harris, James Arthur (1912) Chloranthy and vivipary in the staminate inflorescence of Euchlaena mexicana. Torreya, 12. p. 181.

Harris, James Arthur (December 1909) Correlation in the inflorescence of Celastrus scandens. Missouri Botanical Garden Annual Report, 1909. pp. 116-122.

Harris, James Arthur (October 1910) Correlation in the inflorescence of Sanguinaria. Biologischen Centralblatt, 30 (19). pp. 629-633.

Harris, James Arthur (June 1916) DeVriesian mutation in the garden bean, Phaseolus vulgaris. Proceedings of the National Academy of Sciences, 2 (6). pp. 317-318.

Harris, James Arthur (November 1914) Further observations on the relationship between the number of ovules formed and the number of seeds developing in Cercis. Bulletin of the Torrey Botanical Club, 41 (11). pp. 533-549.

Harris, James Arthur (1911) Further observations on the selective elimination of ovaries in Staphylea. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 5 (2). pp. 173-188.

Harris, James Arthur (1911) Further observations on the selective elimination of ovaries in Staphylea. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 5 (2). pp. 173-188.

Harris, James Arthur (June 1918) Further studies on the interrelationship of morphological and physiological characters in seedlings of Phaseolus. Brooklyn Botanic Garden Memoirs. pp. 167-174.

Harris, James Arthur (March 1917) Further studies on the relationship between bilateral asymmetry and fertility and fecundity in the unilocular fruit. Genetics, 2. pp. 186-204.

Harris, James Arthur (September 1921) Leaf-tissue production and water content in a mutant race of Phaseolus vulgaris. Botanical Gazette, 72 (3). pp. 151-161.

Harris, James Arthur (August 1913) Note on the alpine dwarfing of Polygonum bistorta. Torreya, 13 (8). pp. 182-184.

Harris, James Arthur (1913) Note on the relationship between barometric pressure and carbon dioxide excretion in man. The Biochemical Bulletin, 2 (8). p. 530.

Harris, James Arthur (1911) Observations on the physiology of seed development in Staphylea. Beihefte zum Botan Centralblatt, 28 (1).

Harris, James Arthur (1911) Observations on the physiology of seed development in Staphylea. Beihefte zum Botan Centralblatt, 28 (1).

Harris, James Arthur (July 1914) On a chemical peculiarity of the dimorphic anthers of Lagerstroemia indica, with a suggestion as to its ecological significance. Annals of Botany, 28 (111). pp. 499-507.

Harris, James Arthur (July 1915) On a criterion of substratum homogeneity (or heterogeneity) in field experiments. The American Naturalist, 49 (583). pp. 430-454.

Harris, James Arthur (September 1912) On differential mortality with respect to seed weight occurring in field cultures of Phaseolus vulgaris. The American Naturalist, 46 (549). pp. 512-525.

Harris, James Arthur (February 1914) On differential mortality with respect to seed weight occurring in field cultures of Pisum sativum. The American Naturalist, 48 (566). pp. 83-86.

Harris, James Arthur (1914) On differential mortality with respect to seed weight occurring in field cultures of Pisum sativum. The American Naturalist, 48 (566). p. 83.

Harris, James Arthur (March 1917) On the applicability of Pearson's biserial r to the problem of asymmetry and fertility in the unilocular fruit. Genetics, 2 (2). pp. 205-212.

Harris, James Arthur (October 1914) On the correlation between somatic characters and fertility. II. Illustrations from Phaseolus vulgaris. American Journal of Botany, 1 (8). pp. 398-411.

Harris, James Arthur (1911) On the correlation between somatic characters and fertility: Illustrations from the involucral whorl of Hibiscus. Biometrika, 8 (1- 2). pp. 52-65.

Harris, James Arthur (December 1915) On the distribution and correlation of the sexes (staminate and pistillate flowers) in the inflorescence of the aroids Arisarum vulgare and Arisarum proboscideum. Bulletin of the Torrey Botanical Club, 42 (12). pp. 663-673.

Harris, James Arthur (December 1917) On the distribution of abnormalities in the inflorescence of Spiraea vanhouttei. American Journal of Botany, 4 (10). pp. 624-636.

Harris, James Arthur (November 1918) On the osmotic concentration of the tissue fluids of Phanerogamic epiphytes. American Journal of Botany, 5 (9). pp. 490-506.

Harris, James Arthur (1918) On the osmotic concentration of the tissue fluids of desert Loranthaceae. Memoirs of the Torrey Botanical Club, 17. pp. 307-315.

Harris, James Arthur (1918) On the osmotic concentration of the tissue fluids of desert Loranthaceae. Memoirs of the Torrey Botanical Club, 17. pp. 307-315.

Harris, James Arthur (December 1912) On the relationship between bilateral asymmetry and fertility and fecundity. Archiv für Entwicklungsmechanik der Organismem, 35 (3). pp. 500-522.

Harris, James Arthur (September 1912) On the relationship between the bilateral asymmetry of the unilocular fruit and the weight of the seed which it produces. Science, 36 (926). pp. 414-415.

Harris, James Arthur (1912) On the relationship between the bilateral asymmetry of the unilocular fruit and the weight of the seeds which it produces. Science, 36 (926). pp. 414-415.

Harris, James Arthur (August 1913) On the relationship between the number of ovules formed and the capacity of the ovary for developing its ovules into seeds. Bulletin of the Torrey Botanical Club, 40 (8). pp. 447-455.

Harris, James Arthur (1914) On the relationship between the number of ovules formed and the number of seeds developed in Cercis. Bulletin of the Torrey Botanical Club, 41 (4). pp. 243-256.

Harris, James Arthur (1906) Prolification of the fruit in capsicum and passiflora. Missouri Botanical Garden Annual Report. pp. 133-145.

Harris, James Arthur (1913) Prolification of the fruit of okra, Hibiscus esculentus. Torreya, 13. pp. 33-35.

Harris, James Arthur (September 1918) Secondary parasitism in Phoradendron. Botanical Gazette, 66 (3). pp. 275-276.

Harris, James Arthur (1917) Studies on the correlation between morphological and physiological characters: II. Further studies on the relationship between bilateral asymmetry and fertility and fecundity in the uniocular fruit. Genetics, 2 (2). p. 186.

Harris, James Arthur (1917) Studies on the correlation between morphological and physiological characters: III. On the applicability of Pearson's bi-serial r to the problem of asymmetry and fertility in the uniocular fruit. Genetics, 2 (2). pp. 205-212.

Harris, James Arthur (1916) Studies on the correlation of morphological and physiological characters: I. The development of the primordial leaves in teratological bean seedlings. Genetics, 1 (2). pp. 185-196.

Harris, James Arthur (1917) Sunspots, climatic factors, and plant activities. The American Naturalist, 51 (612). pp. 761-764.

Harris, James Arthur (May 1917) Supplementary determinations of the relationship between the number of ovules per pod and fertility in Phaseolus. Genetics, 2 (3). pp. 282-290.

Harris, James Arthur (March 1913) Supplementary note of the significance of variety tests. Science, 37 (952). pp. 493-494.

Harris, James Arthur (November 1913) Supplementary studies on the differential mortality with respect to seed weight in the germination of garden beans. The American Naturalist, 47 (563). pp. 683-700.

Harris, James Arthur (December 1913) Supplementary studies on the differential mortality with respect to seed weight in the germination of garden beans. II. The American Naturalist, 47 (564). pp. 739-759.

Harris, James Arthur (February 1906) Syncarpy in Martynia lutea. Torreya, 6 (2). pp. 25-28.

Harris, James Arthur (1911) Teratological fruits of Ptelea. Bulletin of the Torrey Botanical Club, 38 (8). pp. 385-387.

Harris, James Arthur (1921) Tissue weight and water content in a tetracotyledonous mutant of Phaseolus vulgaris. Proceedings of the Society for Experimental Biology and Medicine, 18. pp. 207-209.

Harris, James Arthur (June 1909) Variation in the number of seeds per pod in the broom, Cytisus scoparius. The American Naturalist, 43 (510). pp. 350-355.

Harris, James Arthur (1925) The accumulation of chlorides in the leaf tissue fluids of Egyptian cotton with the march of the season. Proceedings of the Society for Experimental Biology and Medicine, 22. pp. 415-417.

Harris, James Arthur (April 1917) The application of correlation formulae to the problem of varietal differences in disease resistance: Data from the Vermont experiments with potatoes. The American Naturalist, 51 (604). pp. 238-244.

Harris, James Arthur (May 1916) A contribution to the problem of homotyposis: Data from the legume Cercis canadensis. Biometrika, 11 (3). pp. 201-214.

Harris, James Arthur (December 1909) The correlation between length of flowering-stalk and number of flowers per inflorescence in Nothoscordum and Allium. Missouri Botanical Garden Annual Report, 1909. pp. 105-115.

Harris, James Arthur (1909) The correlation between the length of flowering stalk and number of flowers in Nothoscordium and Allium. Missouri Botanical Garden Annual Report, 1909. pp. 105-115.

Harris, James Arthur (September 1913) The data of inter-varietal and inter-specific competition in their relation to the problem of natural selection. Science, 38 (977). pp. 402-403.

Harris, James Arthur (May 1905) The dehiscence of anthers by apical pores. Technical Report. Missouri Botanical Garden Press.

Harris, James Arthur (October 1915) An extension to 5.99º of tables to determine the osmotic pressure of expressed vegetable saps from the depression of the freezing point. American Journal of Botany, 2 (8). pp. 418-419.

Harris, James Arthur (October 1913) A first study of the relationship between the weight of the bean seed, Phaseolus vulgaris, and the time required for its germination. The Plant World, 16 (10). pp. 267-274.

Harris, James Arthur (September 1913) An illustration of the influence of substratum heterogeneity upon experimental results. Science, 38 (975). pp. 345-346.

Harris, James Arthur (January 1915) The influence of position in the pod upon the weight of the bean seed. The American Naturalist, 49 (577). pp. 44-47.

Harris, James Arthur (March 1912) The influence of the seed upon the size of the fruit in Staphylea. I. Botanical Gazette, 53 (3). pp. 204-218.

Harris, James Arthur (May 1912) The influence of the seed upon the size of the fruit in Staphylea. II. Botanical Gazette, 53 (5). pp. 396-414.

Harris, James Arthur (January 1918) The interrelationship of the number of stamens and pistils in the flowers of Ficaria. The Biological Bulletin, 34 (1). pp. 7-17.

Harris, James Arthur (June 1909) The leaves of podophyllum. Botanical Gazette, 47 (6). pp. 438-444.

Harris, James Arthur (1913) A quantitative study of the factors influencing the weight of the bean seed: I. Intra-ovarial correlations. Beihefte zum Botan Centralblatt, 31. p. 1.

Harris, James Arthur (September 1916) A quantitative study of the factors influencing the weight of the bean seed: II. Correlation between number of pods per plant and seed weight. Bulletin of the Torrey Botanical Club, 43 (9). pp. 485-494.

Harris, James Arthur (April 1910) A quantitative study of the morphology of the fruit of the blood root, Sanguinaria canadensis. Biometrika, 7 (3). pp. 305-351.

Harris, James Arthur (March 1913) The relationship between the weight of the seed planted and the characteristics of the plant produced. 1. Biometrika, 9 (1, 2). pp. 11-21.

Harris, James Arthur (April 1914) The relationship between the weight of the seed planted and the characteristics of the plant produced. II. Biometrika, 10 (1). pp. 72-84.

Harris, James Arthur (August 1916) A tetracotyledonous race of Phaseolus vulgaris. Memoirs of the New York Botanical Garden, 6. pp. 229-244.

Harris, James Arthur (May 1924) The tissue fluids of Cuscuta. Bulletin of the Torrey Botanical Club, 51 (4). pp. 127-131.

Harris, James Arthur (1919) The transformation of the plant ovule into an ovary. Proceedings of the Society for Experimental Biology and Medicine, 16 (8). pp. 134-136.

Harris, James Arthur (1917) The weight of seeds as related to their number and position. Torreya, 17. pp. 180-182.

Harris, James Arthur, Avery, Billings T. (April 1918) Correlation of morphological variations in the seedling of Phaseolus vulgaris. Bulletin of the Torrey Botanical Club, 45 (3). pp. 109-119.

Harris, James Arthur, Gortner, Ross Aiken (July 1913) Further notes on the relationship between the weight of the sugar beet and the composition of its juice. The Biochemical Bulletin, 2 (8). pp. 524-529.

Harris, James Arthur, Gortner, Ross Aiken (February 1914) Notes on the calculation of the osmotic pressure of expressed vegetable saps from the depression of the freezing point, with a table for the values of P for Δ = 0.001 ∘∘ to Δ = 2.999 ∘. American Journal of Botany, 1 (2). pp. 75-78.

Harris, James Arthur, Gortner, Ross Aiken (March 1913) On the relationship between the weight of the sugar beet and the composition of its juice. Journal of Industrial and Engineering Chemistry, 5 (3). pp. 192-195.

Harris, James Arthur, Gortner, Ross Aiken (January 1914) Researches on the physico-chemical properties of vegetable saps. 2. Note on a comparison of the physico-chemical constants of the juice of apples and pears of varying size and fertility. The Biochemical Bulletin, 3 (10). 196-201, with plate 2.

Harris, James Arthur, Gortner, Ross Aiken, Hoffman, Walter F., Valentine, A. T. (1921) Maximum values of osmotic concentration in plant tissue fluids. Proceedings of the Society for Experimental Biology and Medicine, 18. pp. 106-109.

Harris, James Arthur, Gortner, Ross Aiken, Lawrence, John Vincent (January 1921) On the differentiation of the leaf tissue fluids of ligneous and herbaceous plants with respect to osmotic concentration and electrical conductivity. J Gen Physiol., 3 (3). pp. 343-345.

Harris, James Arthur, Gortner, Ross Aiken, Lawrence, John Vincent (November 1920) On the relationship between freezing point lowering, ∆, and specific electrical conductivity, K, of plant tissue fluids. Science, 52 (1351). pp. 494-495.

Harris, James Arthur, Gortner, Ross Aiken, Lawrence, John Vincent (March 1915) Studies on the physico-chemical properties of vegetable saps. III: A comparison of the physico-chemical constants of the juices expressed from the wall with those from the included carpellary whorl in proliferous fruits of Passiflora gracilis. The Biochemical Bulletin, 4 (13). pp. 52-79.

Harris, James Arthur, Gortner, Ross Aiken, Lawrence, John Vincent (February 1921) The osmotic concentration and electrical conductivity of the tissue fluids of ligneous and herbaceous plants. Journal of Physical Chemistry, 25 (2). pp. 122-146.

Harris, James Arthur, Gortner, Ross Aiken, Lawrence, John Vincent (June 1917) The relationship between the osmotic concentration of leaf sap and height of leaf insertion in trees. Bulletin of the Torrey Botanical Club, 44 (6). pp. 267-286.

Harris, James Arthur, Hoffman, Clara T., Hoffman, Walter F. (October 1925) Sulphate content of the leaf-tissue fluids of Egyptian and Upland cotton. Journal of Agricultural Research, 31 (7). pp. 653-661.

Harris, James Arthur, Hoffman, Walter F., Sinclair, W. B., Johnson, Beatrice W., Evans, R. D. (December 1925) The leaf-tissue fluids of Egyptian cottons. Journal of Agricultural Research, 31 (11). pp. 1027-1033.

Harris, James Arthur, Lawrence, John Vincent (October 1917) Cryoscopic determinations on tissue fluids of plants of Jamaican coastal deserts. Botanical Gazette, 64 (4). pp. 285-305.

Harris, James Arthur, Lawrence, John Vincent (October 1916) On the osmotic pressure of the tissue fluids of Jamaican Loranthaceae parasitic on various hosts. American Journal of Botany, 3 (8). pp. 438-455.

Harris, James Arthur, Lawrence, John Vincent (March 1917) The osmotic concentration of the sap of the leaves of mangrove trees. The Biological Bulletin, 32 (3). pp. 202-211.

Harris, James Arthur, Lawrence, John Vincent (May 1917) The osmotic concentration of the tissue fluids of Jamaican montane rain-forest vegetation. American Journal of Botany, 4 (5). pp. 268-298.

Harris, James Arthur, Lawrence, John Vincent, Gortner, Ross Aiken (April 1915) On the osmotic pressure of the juices of desert plants. Science, 41 (1061). pp. 656-658.

Harris, James Arthur, Lawrence, John Vincent, Gortner, Ross Aiken (July 1916) The cryoscopic constants of expressed vegetable saps as related to local environmental conditions in the Arizona deserts. Physiological Researches, 2 (1, Ser).

Harris, James Arthur, Lawrence, Zonja Wallen, Hoffman, Walter F., Lawrence, John Vincent, Valentine, A. T. (February 1924) Tissue fluids of Egyptian and Upland cottons and their F1 hybrid. Journal of Agricultural Research, 27 (5). pp. 267-328.

Harris, James Arthur, Popenoe, Wilson (November 1916) Freezing-point lowering of the leaf sap of the horticultural types of Persea Americana. Journal of Agricultural Research, 7 (6). pp. 261-268.

Harris, James Arthur, Sinnott, Edmond Ware (January 1921) The vascular anatomy of normal and variant seedlings of phaseolus vulgaris. Proceedings of the National Academy of Sciences, 7 (1). pp. 35-41.

Harris, James Arthur, Sinnott, Edmond Ware, Pennypacker, John Y., Durham, G. B. (July 1921) Correlations between anatomical characters in the seedling of Phaseolus vulgaris. American Journal of Botany, 8 (7). pp. 339-365.

Harris, James Arthur, Sinnott, Edmond Ware, Pennypacker, John Y., Durham, G. B. (November 1921) The interrelationship of the number of the two types of vascular bundles in the transition zone of the axis of Phaseolus vulgaris. American Journal of Botany, 8 (9). pp. 425-432.

Harris, James Arthur, Sinnott, Edmond Ware, Pennypacker, John Y., Durham, G. B. (February 1921) The vascular anatomy of dimerous and trimerous seedlings of Phaseolus vulgaris. American Journal of Botany, 8 (2). pp. 63-102.

Harris, James Arthur, Sinnott, Edmond Ware, Pennypacker, John Y., Durham, G. B. (October 1921) The vascular anatomy of hemitrimerous seedlings of Phaseolus vulgaris. American Journal of Botany, 8 (8). pp. 375-381.

Hauser, F., Chen, W. X., Deinlein, U., Chang, K., Ossowski, S., Fitz, J., Hannon, G. J., Schroeder, J. I. (August 2013) A Genomic-Scale Artificial MicroRNA Library as a Tool to Investigate the Functionally Redundant Gene Space in Arabidopsis. Plant Cell, 25 (8). pp. 2848-2863. ISSN 1040-4651

He, Jia, Alonge, Michael, Ramakrishnan, Srividya, Benoit, Matthias, Soyk, Sebastian, Reem, Nathan, Hendelman, Anat, Eck, Joyce Van, Schatz, Michael, Lippman, Zachary (2022) Establishing Physalisas a new Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome. bioRxiv. (Submitted)

He, Jia, Van Eck, Joyce, Lippman, Zachary B (June 2024) Blooming balloons: Searching for mechanisms of the inflated calyx. Current Opinion in Plant Biology, 81. p. 102595. ISSN 1369-5266

Henderson, Lena B. (June 1926) The effect of the tides on pollination and rate of growth in plantago. Technical Report. Long Island Biological Association The Biological Laboratory, Cold Spring Harbor,, NY.

Herridge, Rowan P, Dolata, Jakub, Migliori, Valentina, de Santis Alves, Cristiane, Borges, Filipe, Schorn, Andrea J, van Ex, Frédéric, Lin, Ann, Bajczyk, Mateusz, Parent, Jean-Sebastien, Leonardi, Tommaso, Hendrick, Alan, Kouzarides, Tony, Martienssen, Robert A (September 2024) Pseudouridine guides germline small RNA transport and epigenetic inheritance. Nature Structural & Molecular Biology. ISSN 1545-9993 (Public Dataset)

Hills-Muckey, Kelly, Martinez, Michael AQ, Stec, Natalia, Hebbar, Shilpa, Saldanha, Joanne, Medwig-Kinney, Taylor N, Moore, Frances EQ, Ivanova, Maria, Morao, Ana, Ward, JD, Moss, Eric G, Ercan, Sevinc, Zinovyeva, Anna Y, Matus, David Q, Hammell, Christopher M (October 2021) An engineered, orthogonal auxin analog/AtTIR1(F79G) pairing improves both specificity and efficacy of the auxin degradation system in Caenorhabditis elegans. Genetics: a periodical record of investigations bearing on heredity and variation. ISSN 1943-2631

Hon, T., Mars, K., Young, G., Tsai, Y. C., Karalius, J. W., Landolin, J. M., Maurer, N., Kudrna, D., Hardigan, M. A., Steiner, C. C., Knapp, S. J., Ware, D., Shapiro, B., Peluso, P., Rank, D. R. (November 2020) Highly accurate long-read HiFi sequencing data for five complex genomes. Sci Data, 7 (1). p. 399. ISSN 2052-4463

Horvath, D. P., Patel, S., Doǧramaci, M., Chao, W. S., Anderson, J. V., Foley, M. E., Scheffler, B., Lazo, G., Dorn, K., Yan, C., Childers, A., Schatz, M., Marcus, S. (May 2018) Gene Space and Transcriptome Assemblies of Leafy Spurge (Euphorbia esula) Identify Promoter Sequences, Repetitive Elements, High-Quality Markers, and a Full-Length Chloroplast Genome. Weed Science, 66 (3). pp. 355-367. ISSN 00431745 (ISSN)

Hossain, Chandrema, Hernandez, Victoria, McHugh, Luisa, Tran, Phu-Tri, Nash, Bruce (April 2022) Analyzing the impacts of tobacco mosaic virus on the microbial diversity of Nicotiana benthamiana. Journal of Plant Pathology. ISSN 2239-7264

Hu, Haifei, Scheben, Armin, Wang, Jian, Li, Fangping, Li, Chengdao, Edwards, David, Zhao, Junliang (November 2023) Unravelling inversions: Technological advances, challenges, and potential impact on crop breeding. Plant Biotechnology Journal. ISSN 1467-7644

Hu, Y, Wu, Q, Sprague, SA, Park, J, Oh, M, Rajashekar, CB, Koiwa, H, Nakata, PA, Cheng, N, Hirschi, KD, White, FF, Park, S (November 2015) Tomato expressing Arabidopsis glutaredoxin gene AtGRXS17 confers tolerance to chilling stress via modulating cold responsive components. Horticulture Research, 2 (1). ISSN 2052-7276

Hu, Haifei, Scheben, Armin, Verpaalen, Brent, Tirnaz, Soodeh, Bayer, Philipp E, Hodel, Richard GJ, Batley, Jacqueline, Soltis, Douglas E, Soltis, Pamela S, Edwards, David (July 2021) Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. New Phytologist. ISSN 0028-646X

Huanca-Mamani, W., Garcia-Aguilar, M., Leon-Martinez, G., Grossniklaus, U., Vielle-Calzada, J. P. (November 2005) CHR11, a chromatin-remodeling factor essential for nuclear proliferation during female gametogenesis in Arabidopsis thaliana. Proc Natl Acad Sci U S A, 102 (47). pp. 17231-17236. ISSN 0027-8424

Huang, H., Mizukami, Y., Hu, Y., Ma, H. (October 1993) Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res, 21 (20). pp. 4769-76. ISSN 0305-1048 (Print)

Huang, H., Tudor, M., Weiss, C. A., Hu, Y., Ma, H. (June 1995) The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol Biol, 28 (3). pp. 549-67. ISSN 0167-4412 (Print)

Huang, H., Weiss, C. A., Ma, H. (January 1994) Regulated Expression of the Arabidopsis G-Protein Alpha-Subunit Gene Gpa1. International Journal of Plant Sciences, 155 (1). pp. 3-14. ISSN 1058-5893

Huang, J., Lu, G., Liu, L., Raihan, M. S., Xu, J., Jian, L., Zhao, L., Tran, T. M., Zhang, Q., Liu, J., Li, W., Wei, C., Braun, D. M., Li, Q., Fernie, A. R., Jackson, D., Yan, J. (August 2020) The Kernel Size-Related Quantitative Trait Locus qKW9 Encodes a Pentatricopeptide Repeat Protein That Aaffects Photosynthesis and Grain Filling. Plant Physiol, 183 (4). pp. 1696-1709. ISSN 0032-0889 (Print)0032-0889

Huck, N., Moore, J. M., Federer, M., Grossniklaus, U. (May 2003) The Arabidopsis mutant feronia disrupts the female gametophytic control of pollen tube reception. Development, 130 (10). pp. 2149-2159. ISSN 0950-1991

Hufford, M. B., Xu, X., van Heerwaarden, J., Pyhajarvi, T., Chia, J. M., Cartwright, R. A., Elshire, R. J., Glaubitz, J. C., Guill, K. E., Kaeppler, S. M., Lai, J. S., Morrell, P. L., Shannon, L. M., Song, C., Springer, N. M., Swanson-Wagner, R. A., Tiffin, P., Wang, J., Zhang, G. Y., Doebley, J., McMullen, M. D., Ware, D., Buckler, E. S., Yang, S., Ross-Ibarra, J. (July 2012) Comparative population genomics of maize domestication and improvement. Nature Genetics, 44 (7). pp. 808-811. ISSN 1061-4036

Hung, H. Y., Shannon, L. M., Tian, F., Bradbury, P. J., Chen, C., Flint-Garcia, S. A., McMullen, M. D., Ware, D., Buckler, E. S., Doebley, J. F., Holland, J. B. (July 2012) ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proceedings of the National Academy of Sciences of the United States of America, 109 (28). E1913-E1921. ISSN 0027-8424

Husbands, A. Y., Aggarwal, V., Ha, T., Timmermans, M. C. (August 2016) In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 28 (8). pp. 1783-94. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Husbands, A. Y., Benkovics, A. H., Nogueira, F. T., Lodha, M., Timmermans, M. C. (December 2015) The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 27 (12). pp. 3321-3335. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Husbands, A. Y., Chitwood, D. H., Plavskin, Y., Timmermans, M. C. P. (September 2009) Signals and prepatterns: new insights into organ polarity in plants. Genes and Development, 23 (17). pp. 1986-97. ISSN 08909369 (ISSN)

Husbands, Aman Y, Feller, Antje, Aggarwal, Vasudha, Dresden, Courtney E, Holub, Ashton S, Ha, Taekjip, Timmermans, Marja CP (March 2023) The START domain potentiates HD-ZIPIII transcriptional activity. The Plant Cell. ISSN 1040-4651

Huttly, A. K., Martienssen, R. A., Baulcombe, D. C. (1988) Sequence heterogeneity and differential expression of the alpha-Amy2 gene family in wheat. Mol Gen Genet, 214 (2). pp. 232-240. ISSN 0026-8925

I

Ilic, K., Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., Rhee, S. Y. (February 2007) The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology, 143 (2). pp. 587-599. ISSN 0032-0889

International Rice Genome Sequencing Project, (August 2005) The map-based sequence of the rice genome. Nature, 436 (7052). pp. 793-800. ISSN 0028-0836

Iohannes, Sessen Daniel, Jackson, David (September 2023) Tackling redundancy: genetic mechanisms underlying paralog compensation in plants. New Phytologist. ISSN 0028-646X

Itoh, T., Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., De Oliveira, A. C., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y. I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J. P., Kikuchi, S., Komatsu, S., Koyanagi, K. O., Kubooka, H., Lieberherr, D., Lin, Y. C., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W. R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., Oota, S., Osato, N., Palmer, L. E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N. K., Smith-White, B., Takeda, J. I., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A. K., Vanavichit, A., Wang, A., Wing, R. A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T., Sasaki, T. (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project. Genome Research, 17 (2). pp. 175-183. ISSN 10889051 (ISSN)

J

Jackson, D. (March 2017) No sex please, we're (in)breeding. EMBO Journal, 36 (6). pp. 703-704. ISSN 0261-4189

Jackson, D. (March 2015) Plasmodesmata spread their influence. F1000Prime Reports, 7. Article number 25. ISSN 20517599

Jackson, D. P. (April 1991) Colouring the snapdragon. Current Biology, 1 (2). p. 99. ISSN 0960-9822

Jackson, D. P. (January 2007) Imaging of Fresh Arabidopsis Tissues in the Scanning Electron Microscope. Cold Spring Harbor Protocols, 2007 (1).

Jackson, D. P. (1992) In-situ hybridisation in plants. In: Molecular Plant Pathology: A Practical Approach. Practical Approach Series, 1 (85). Oxford University Press. ISBN 978-0-19-963102-5

Jackson, D. P. (1996) Plant morphogenesis: Designing leaves. Current Biology, 6 (8). pp. 917-919. ISSN 09609822 (ISSN)

Jackson, D. P. (November 2012) Talk from David Jackson at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Jackson, D. P., Culianez-Macia, F., Prescott, A. G., Roberts, K., Martin, C. (February 1991) Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 3 (2). pp. 115-125. ISSN 1040-4651 (Print)1040-4651 (Linking)

Jackson, D. P., Hake, S. (1997) Morphogenesis on the move: Cell-to cell trafficking of plant regulatory proteins. Current Opinion in Genetics and Development, 7 (4). pp. 495-500. ISSN 0959437X (ISSN)

Jackson, D. P., Roberts, K., Martin, C. (July 1992) Temporal And Spatial Control Of Expression Of Anthocyanin Biosynthetic Genes In Developing Flowers Of Antirrhinum majus. Plant Journal, 2 (4). pp. 425-434. ISSN 0960-7412

Jackson, David (2007) Transcription Factor Movement Through Plasmadesmata. In: Plasmodesmata. Blackwell Publishing Ltd, pp. 113-134. ISBN 9780470988572

Jacob, Y., Martienssen, R. A. (January 2011) Chromatin reprogramming: gender equality during Arabidopsis germline differentiation. Current biology, 21 (1). R20-2. ISSN 1879-0445 (Electronic)0960-9822 (Linking)

Jaiswal, P., Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L. D., Ware, D. H., Zapata, F. (2005) Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comp Funct Genomics, 6 (7-8). pp. 388-97. ISSN 1531-6912 (Print)

Jaiswal, P., Ware, D., Ni, J. J., Chang, K., Zhao, W., Schmidt, S., Pan, X. K., Clark, K., Teytelman, L., Cartinhour, S., Stein, L., McCouch, S. (April 2002) Gramene: development and integration of trait and gene ontologies for rice. Comparative and Functional Genomics, 3 (2). pp. 132-136. ISSN 1531-6912

Javelle, M., Klein-Cosson, C., Vernoud, V., Boltz, V., Maher, C., Timmermans, M. C. P., Depege-Fargeix, N., Rogowsky, P. M. (October 2011) Genome-Wide Characterization of the HD-ZIP IV Transcription Factor Family in Maize: Preferential Expression in the Epidermis. Plant Physiology, 157 (2). pp. 790-803. ISSN 0032-0889

Javelle, M., Marco, C. F., Timmermans, M. (2011) In Situ Hybridization for the Precise Localization of Transcripts in Plants. Journal of Visualized Experiments (57). ISSN 1940-087X (Electronic)1940-087X (Linking)

Javelle, M., Timmermans, M. C. (February 2012) In situ localization of small RNAs in plants by using LNA probes. Nat Protoc, 7 (3). pp. 533-41. ISSN 1750-2799 (Electronic)1750-2799 (Linking)

Je, B. I., Gruel, J., Lee, Y. K., Bommert, P., Arevalo, E. D., Eveland, A. L., Wu, Q., Goldshmidt, A., Meeley, R., Bartlett, M., Komatsu, M., Sakai, H., Jonsson, H., Jackson, D. (July 2016) Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits. Nat Genet, 48 (7). pp. 785-791. ISSN 1546-1718 (Electronic)1061-4036 (Linking) (Public Dataset)

Je, B. I., Xu, F., Wu, Q., Liu, L., Meeley, R., Gallagher, J. P., Corcilius, L., Payne, R. J., Bartlett, M. E., Jackson, D. (March 2018) The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors. Elife, 7. ISSN 2050-084x

Jeffrey Chen, Z., Wang, J., Tian, L., Lee, H. S., Wang, J. J., Chen, M., Lee, J. J., Josefsson, C., Madlung, A., Watson, B., Lippman, Z., Vaughn, M., Chris Pires, J., Colot, V., Doerge, R. W., Martienssen, R. A., Comai, L., Osborn, T. C. (August 2004) The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological journal of the Linnean Society. Linnean Society of London, 82 (4). pp. 689-700. ISSN 0024-4066 (Print)0024-4066 (Linking)

Jiang, F., Guo, M., Yang, F., Duncan, K., Jackson, D., Rafalski, A., Wang, S., Li, B. (May 2012) Mutations in an AP2 transcription factor-like gene affect internode length and leaf shape in maize. PLoS ONE, 7 (5). Article no.e37040.

Jiang, K., Liberatore, K. L., Park, S. J., Alvarez, J. P., Lippman, Z. B. (December 2013) Tomato yield heterosis is triggered by a dosage sensitivity of the florigen pathway that fine-tunes shoot architecture. PLoS Genetics, 9 (12). e1004043. ISSN 1553-7390

Jiang, Chenglin, Sun, Ju, Li, Rui, Yan, Shijuan, Chen, Wei, Guo, Liang, Qin, Guochen, Wang, Pengcheng, Luo, Cheng, Huang, Wenjie, Zhang, Qinghua, Fernie, Alisdair R, Jackson, David, Li, Xiang, Yan, Jianbing (April 2022) A reactive oxygen species burst causes haploid induction in maize. Molecular Plant. ISSN 1674-2052

Jiao, Yinping, Nigam, Deepti, Barry, Kerrie, Daum, Chris, Yoshinaga, Yuko, Lipzen, Anna, Khan, Adil, Parasa, Sai-Praneeth, Wei, Sharon, Lu, Zhenyuan, Tello-Ruiz, Marcela K, Dhiman, Pallavi, Burow, Gloria, Hayes, Chad, Chen, Junping, Brandizzi, Federica, Mortimer, Jenny, Ware, Doreen, Xin, Zhanguo (December 2023) A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes. The Plant Journal. ISSN 0960-7412

Jiao, Y., Burke, J. J., Chopra, R., Burow, G., Chen, J., Wang, B., Hayes, C., Emendack, Y., Ware, D., Xin, Z. (July 2016) A Sorghum Mutant Resource as an Efficient Platform for Gene Discovery in Grasses. Plant Cell, 28 (7). pp. 1551-1562. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Jiao, Y., Lee, Y. K., Gladman, N., Chopra, R., Christensen, S. A., Regulski, M., Burow, G., Hayes, C., Burke, J., Ware, D., Xin, Z. (February 2018) MSD1 regulates pedicellate spikelet fertility in sorghum through the jasmonic acid pathway. Nat Commun, 9 (1). p. 822. ISSN 2041-1723

Joly-Lopez, Z., Platts, A. E., Gulko, B., Choi, J. Y., Groen, S. C., Zhong, X., Siepel, A., Purugganan, M. D. (February 2020) An inferred fitness consequence map of the rice genome. Nat Plants, 6 (2). pp. 119-130. ISSN 2055-0278 (Public Dataset)

Jordan, C., Stanzione, D., Ware, D. H., Lu, J., Noutsos, C. (2010) Comprehensive data infrastructure for plant bioinformatics. 2010 IEEE International Conference on Cluster Computing Workshops and Posters.

K

Kaiserli, E., Paldi, K., O'Donnell, L., Batalov, O., Pedmale, U. V., Nusinow, D. A., Kay, S. A., Chory, J. (November 2015) Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. Dev Cell, 35 (3). pp. 311-21. ISSN 1534-5807

Kakeshpour, T., Wu, Q., Tamang, T., Park, J., Park, S. (June 2018) Multiplex Genome Editing of Class II Glutaredoxins in Solanum lycopersicum Via a CRISPR/Cas9 System. In Vitro Cellular & Developmental Biology-Animal, 54 (Supple). S46-S47. ISSN 1071-2690

Kaufmann, Berwind Petersen, Bate, Ruth C. (September 1938) An X-ray induced intercalary duplication in Drosophila involving union of sister chromatids. Proceedings of the National Academy of Sciences, 24 (9). pp. 368-371.

Kaufmann, Berwind Petersen, Gay, Helen, McDonald, Margaret R. (December 1948) Enzymatic degradation of plant chromosomes. American Journal of Botany, 35 (10). p. 794.

Kaul, S., Koo, H. L., Jenkins, J., Rizzo, M., Rooney, T., Tallon, L. J., Feldblyum, T., Nierman, W., Benito, M. I., Lin, X., Town, C. D., Venter, J. C., Fraser, C. M., Tabata, S., Nakamura, Y., Kaneko, T., Sato, S., Asamizu, E., Kato, T., Kotani, H., Sasamoto, S., Ecker, J. R., Theologis, A., Federspiel, N. A., Palm, C. J., Osborne, B. I., Shinn, P., Dewar, K., Kim, C. J., Buehler, E., Dunn, P., Chao, Q., Chen, H., Vysotskaia, V. S., Lenz, C. A., Hansen, N. F., Liu, S. X., Alta, H., Sakano, H., Lam, B., Pham, P. K., Nguyen, M., Yu, G., Southwick, A., Lee, J. M., Miranda, M., Toriumi, M. J., Davis, R. W., Conway, A. B., Conn, L., Hootan, A., Wambutt, R., Murphy, G., Düsterhöft, A., Stiekema, W., Pohl, T., Entian, K. D., Terryn, N., Volckaert, G., Salanoubat, M., Choisne, N., Artiguenave, F., Weissenbach, J., Quetier, F., Rieger, M., Ansorge, W., Unseld, M., Fartmann, B., Valle, G., Wilson, R. K., Sekhon, M., Pepin, K., Murray, J., Johnson, D., Hillier, L., de la Bastide, M., Huang, E., Spiegel, L., Gnoj, L., Habermann, K., Dedhia, N., Parnell, L., Preston, R., Marra, M., McCombie, W. R., Chen, E., Martienssen, R., Mayer, K., Lemcke, K., Haas, B., Haase, D., Rudd, S., Schoof, H., Frishman, D., Morgenstern, B., Zaccaria, P., Mewes, H. W., White, O., Creasy, T. H., Bielke, C. (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408 (6814). pp. 796-815. ISSN 00280836 (ISSN)

Kawahara, Y., de la Bastide, M., Hamilton, J. P., Kanamori, H., McCombie, W. R., Ouyang, S., Schwartz, D. C., Tanaka, T., Wu, J., Zhou, S., Childs, K. L., Davidson, R. M., Lin, H., Quesada-Ocampo, L., Vaillancourt, B., Sakai, H., Lee, S. S., Kim, J., Numa, H., Itoh, T., Buell, C. R., Matsumoto, T. (2013) Improvement of the oryza sativa nipponbare reference genome using next generation sequence and optical map data. Rice, 6 (1). pp. 3-10. ISSN 19398425 (ISSN)

Keller, M. M., Jaillais, Y., Pedmale, U. V., Moreno, J. E., Chory, J., Ballare, C. L. (July 2011) Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades. Plant J, 67 (2). pp. 195-207. ISSN 0960-7412

Khouider, Souraya, Borges, Filipe, LeBlanc, Chantal, Ungru, Alexander, Schnittger, Arp, Martienssen, Robert, Colot, Vincent, Bouyer, Daniel (January 2021) Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications, 12 (1). p. 410. ISSN 2041-1723

Kidner, C. A., Martienssen, R. A. (January 2003) Macro effects of microRNAs in plants. Trends in Genetics, 19 (1). pp. 13-16. ISSN 0168-9525

Kidner, C. A., Timmermans, M. C. (February 2007) Mixing and matching pathways in leaf polarity. Current Opinion in Plant Biology, 10 (1). pp. 13-20. ISSN 1369-5266 (Print)1369-5266

Kidner, C. A., Timmermans, M. C. P. (2010) Signaling sides adaxial-abaxial patterning in leaves. Current Topics in Developmental Biology, 91. pp. 141-168.

Kidner, C. A., Timmermans, M. C. P., Byrne, M. E., Martienssen, R. A. (2002) Developmental genetics of the angiosperm leaf. Advances in Botanical Research, 38. pp. 191-234. ISSN 0065-2296

Kim, M., McCormick, S., Timmermans, M., Sinha, N. (July 2003) The expression domain of PHANTASTICA determines leaflet placement in compound leaves. Nature, 424 (6947). pp. 438-443. ISSN 0028-0836

Kim, Youngin, Kim, Geon Woo, Han, Koeun, Lee, Hea-Young, Jo, Jinkwan, Kwon, Jin-Kyung, Lemmon, Zachary, Lippman, Zachary, Kang, Byoung-Cheorl (May 2022) Identification of Genetic Factors Controlling the Formation of Multiple Flowers Per Node in Pepper (Capsicum spp.). Frontiers in Plant Science, 13. p. 884338. ISSN 1664-462X

Kitagawa, Munenori, Tran, Thu M, Jackson, David (June 2023) Traveling with purpose: cell-to-cell transport of plant mRNAs. Trends in Cell Biology. S0962-8924(23)00106. ISSN 0962-8924

Kitagawa, M., Jackson, D. (April 2019) Control of Meristem Size. Annu Rev Plant Biol, 70. pp. 269-291. ISSN 1543-5008

Kitagawa, Munenori, Jackson, David (March 2022) A Forward Genetic Approach to Identify Plasmodesmal Trafficking Regulators Based on Trichome Rescue. Methods in Molecular Biology, 2457. pp. 393-407. ISSN 1064-3745

Knauer, S., Holt, A.L., Rubio-Somoza, I., Tucker, E. J., Hinze, A., Pisch, M., Javelle, M., Timmermans, M. C. P., Tucker, M. R., Laux, T. (January 2013) A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem. Developmental Cell. ISSN 15345807

Knauer, S., Javelle, M., Li, L., Li, X., Ma, X., Wimalanathan, K., Kumari, S., Johnston, R., Leiboff, S., Meeley, R., Schnable, P. S., Ware, D., Lawrence-Dill, C., Yu, J., Muehlbauer, G. J., Scanlon, M. J., Timmermans, M. C. P. (November 2019) A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits. Genome Res, 29 (12). pp. 1962-1973. ISSN 1088-9051 (Public Dataset)

Kresovich, S., Barbazuk, B., Bedell, J. A., Borrell, A., Buell, C. R., Burke, J., Clifton, S., Cordonnier-Pratt, M. M., Cox, S., Dahlberg, J., Erpelding, J., Fulton, T. M., Fulton, B., Fulton, L., Gingle, A. R., Hash, C. T., Huang, Y., Jordan, D., Klein, P. E., Klein, R. R., Magalhaes, J., McCombie, R., Moore, P., Mullet, J. E., Ozias-Akins, P., Paterson, A. H., Porter, K., Pratt, L., Roe, B., Rooney, W., Schnable, P. S., Stelly, D. M., Tuinstra, M., Ware, D., Warek, U. (2005) Toward sequencing the sorghum genome. A U.S. National Science Foundation-sponsored workshop report. Plant Physiology, 138 (4). pp. 1898-1902. ISSN 00320889 (ISSN)

Kumari, S., Ware, D. (October 2013) Genome-Wide Computational Prediction and Analysis of Core Promoter Elements across Plant Monocots and Dicots. PLoS ONE, 8 (10). Art no. e79011. ISSN 1932-6203

Kurtz, S., Narechania, A., Stein, J. C., Ware, D. H. (October 2008) A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics, 9. p. 517.

Kwon, Choon-Tak, Tang, Lingli, Wang, Xingang, Gentile, Iacopo, Hendelman, Anat, Robitaille, Gina, Van Eck, Joyce, Xu, Cao, Lippman, Zachary (2022) Dynamic evolution of small signaling peptide compensation in plant stem cell control. bioRxiv. (Submitted)

Kwon, Choon-Tak, Tang, Lingli, Wang, Xingang, Gentile, Iacopo, Hendelman, Anat, Robitaille, Gina, Van Eck, Joyce, Xu, Cao, Lippman, Zachary B (March 2022) Dynamic evolution of small signalling peptide compensation in plant stem cell control. Nature Plants. ISSN 2055-0278

L

Lacroix, B., Gizatullina, D. I., Babst, B. A., Gifford, A. N., Citovsky, V. (April 2014) AgrobacteriumT-DNA-encoded protein Atu6002 interferes with the host auxin response. Molecular Plant Pathology, 15 (3). pp. 275-283. ISSN 14646722 (ISSN)

Lalanne, E., Michaelidis, C., Moore, J. M., Gagliano, W., Johnson, A., Patel, R., Howden, R., Vielle-Calzada, J. P., Grossniklaus, U., Twell, D. (August 2004) Analysis of transposon insertion mutants highlights the diversity of mechanisms underlying male progamic development in arabidopsis. Genetics, 167 (4). pp. 1975-1986. ISSN 0016-6731

Lanctot, Amy (January 2024) On the cutting edge of development: Laser-assisted microdissection of the Arabidopsis gynoecium reveals tissue-specific gene expression patterns. Plant Physiology. ISSN 0032-0889

Lanctot, Amy (November 2023) A high-yielding recipe: Cytokinin signaling in soybean roots affects phosphorus uptake efficiency and crop production. Plant Physiology. kiad616. ISSN 0032-0889

Lanctot, Amy (August 2023) The root of the mystery: The role of long non-coding RNAs in regulating transcription. Plant Physiology. kiad434. ISSN 0032-0889

Lanctot, Amy, Hendelman, Anat, Udilovich, Peter, Robitaille, Gina M, Lippman, Zachary (November 2024) Antagonizing cis-regulatory elements of a conserved flowering gene mediate developmental robustness. bioRxiv. ISSN 2692-8205 (Submitted)

Lanctot, Amy (September 2022) At home and away: A mobile transcription factor regulates meristem development in discrete spatial domains. Plant Physiology. kiac453. ISSN 0032-0889

Lanctot, Amy (February 2022) Branching out underground: brassinosteroid signaling promotes lateral root development in rice. Plant Physiology. ISSN 1532-2548

Lanctot, Amy (December 2022) A lotus by any other color: Gene regulation divergence in lotus petal development. Plant Physiology. kiac596. ISSN 0032-0889

Lariguet, P., Schepens, I., Hodgson, D., Pedmale, U. V., Trevisan, M., Kami, C., de Carbonnel, M., Alonso, J. M., Ecker, J. R., Liscum, E., Fankhauser, C. (June 2006) PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proc Natl Acad Sci U S A, 103 (26). pp. 10134-9. ISSN 0027-8424 (Print)0027-8424

Laughlin, Harry Hamilton (1919) Durations of the several mitotic stages in the root -tip cells of the common onion. Project Report. Carnegie Institution of Washington, Washington, D.C..

Laughlin, Harry Hamilton (June 1918) Modifications of the 9:3:3:1 ratio. The American Naturalist, 52 (618/61). pp. 353-364.

Law, M., Childs, K. L., Campbell, M. S., Stein, J. C., Holt, C., Panchy, N., Lei, J., Jao, D., Andorf, C. M., Lawrence, C. J., Ware, D., Shiu, S. H., Sun, Y., Jiang, N., Yandell, M. (November 2014) Automated update, revision and quality control of the Zea mays genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. ISSN 0032-0889

Lawrence, Carolyn J., Ware, Doreen (2008) Databases and data mining. In: Handbook of Maize: History and Practice of Genetics and Genomics. Springer Science + Business Media LLC, pp. 659-672. ISBN 978-0-387-77862-4

Lawrence, John Vincent, Harris, James Arthur (June 1924) Tests of a wet oxidation and modified Volhard method for the determination of chlorides in plant tissue fluids. Journal of the American Chemical Society, 46 (6). pp. 1471-1477.

Lawrence, John Vincent, Harris, James Arthur (October 1925) A practical method for the determination of the chloride content of plant tissue fluids. Ecology, 6 (4). pp. 391-396.

Lee, Eun Song, Heo, Jung, Bang, Woo Young, Chougule, Kapeel M, Waminal, Nomar Espinosa, Hong, Nguyen Thi, Kim, Min Ji, Beak, Hong Kwan, Kim, Yong Jun, Priatama, Ryza A, Jang, Ji In, Cha, Kang Il, Son, Seung Han, Rajendran, Sujeevan, Choo, Young-Kug, Bae, Jong Hyang, Kim, Chul Min, Lee, Young Koung, Bae, Sangsu, Jones, Jonathan DG, Sohn, Kee Hoon, Lee, Jiyoung, Kim, Hyun Hee, Hong, Jong Chan, Ware, Doreen, Kim, Keunhwa, Park, Soon Ju (August 2023) Engineering homoeologs provide a fine scale for quantitative traits in polyploid. Plant Biotechnology Journal. pp. 1-15. ISSN 1467-7644 (Public Dataset)

Lee, Seung Cho, Adams, Dexter W, Ipsaro, Jonathan J, Cahn, Jonathan, Lynn, Jason, Kim, Hyun-Soo, Berube, Benjamin, Major, Viktoria, Calarco, Joseph P, LeBlanc, Chantal, Bhattacharjee, Sonali, Ramu, Umamaheswari, Grimanelli, Daniel, Jacob, Yannick, Voigt, Philipp, Joshua-Tor, Leemor, Martienssen, Robert A (August 2023) Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation. Cell, 186 (19). 4100-4116.e15. ISSN 0092-8674 (Public Dataset)

Lee, YK, Kim, K, Ware, D (April 2024) Role of moss and Arabidopsis zinc-finger homeodomain transcription factors in regulating plant architecture. Plant Biotechnology Reports, 18 (2). pp. 223-231. ISSN 1863-5466

Lee, YK, Olson, A, Kim, K, Ohme-Takagi, M, Ware, D (January 2023) HB31 and HB21 regulate floral architecture through miRNA396/GRF modules in Arabidopsis. Plant Biotechnology Reports. ISSN 1863-5466

Lee, E. K., Cibrian-Jaramillo, A., Kolokotronis, S. O., Katari, M. S., Stamatakis, A., Ott, M., Chiu, J. C., Little, D. P., Stevenson, D. W., McCombie, W. R., Martienssen, R. A., Coruzzi, G., Desalle, R. (December 2011) A functional phylogenomic view of the seed plants. PLoS genetics, 7 (12). e1002411. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Lee, S.C., Ernst, E., Berube, B., Borges, F., Parent, J. S., Ledon, P., Schorn, A., Martienssen, R. A. (April 2020) Arabidopsis Retrotransposon Virus-Like Particles and Their Regulation by Epigenetically Activated Small RNA. Genome Research, 30 (4). pp. 576-588. ISSN 1088-9051

Lee, Seung Cho, Martienssen, Robert A (January 2021) Phase separation in plant miRNA processing. Nature Cell Biology, 23 (1). pp. 5-6. ISSN 1465-7392

Lee, Seung Cho, Martienssen, Robert A (September 2021) Regulation of retrotransposition in Arabidopsis. Biochemical Society Transactions. ISSN 0300-5127

Lee, Young Koung, Kumari, Sunita, Olson, Andrew, Hauser, Felix, Ware, Doreen (August 2022) Role of a ZF-HD Transcription Factor in miR157-Mediated Feed-Forward Regulatory Module That Determines Plant Architecture in Arabidopsis. International Journal of Molecular Sciences, 23 (15). p. 8665. ISSN 1422-0067

Leiboff, S., Li, X., Hu, H. C., Todt, N., Yang, J., Li, X., Yu, X., Muehlbauer, G. J., Timmermans, M. C., Yu, J., Schnable, P. S., Scanlon, M. J. (November 2015) Genetic control of morphometric diversity in the maize shoot apical meristem. Nat Commun, 6. p. 8974. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Leitch, A. R., Schwarzacher, T. , Jackson, D. P. (November 1994) In situ Hybridisation, A Practical Guide. Microscopy Handbooks . BIOS Scientific Publishers. ISBN 1872748481

Li, L., Ljung, K., Breton, G., Schmitz, R. J., Pruneda-Paz, J., Cowing-Zitron, C., Cole, B. J., Ivans, L. J., Pedmale, U. V., Jung, H. S., Ecker, J. R., Kay, S. A., Chory, J. (April 2012) Linking photoreceptor excitation to changes in plant architecture. Genes Dev, 26 (8). pp. 785-90. ISSN 0890-9369

Li, L., Petsch, K., Shimizu, R., Liu, S., Xu, W. W., Ying, K., Yu, J., Scanlon, M. J., Schnable, P. S., Timmermans, M. C. P., Springer, N. M., Muehlbauer, G. J. (January 2013) Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. PLoS Genetics, 9 (1). Article number e1003202. ISSN 15537390 (ISSN)

Li, L., Zhang, Q., Pedmale, U. V., Nito, K., Fu, W., Lin, L., Hazen, S. P., Chory, J. (October 2014) PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade. Mol Plant, 7 (10). pp. 1582-5. ISSN 1674-2052

Liang, C., Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., Hurwitz, B. L., McCouch, S., Ni, J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C. W., Wei, X., Yap, I., Youens-Clark, K., Ware, D. H., Stein, L. D. (January 2008) Gramene: a growing plant comparative genomics resource. Nucleic Acids Res, 36 (Databa). D947-53.

Liang, C., Mao, L., Ware, D. H., Stein, L. D. (October 2009) Evidence-based gene predictions in plant genomes. Genome Res, 19 (10). 1912-1923 .

Liberatore, Katie (April 2014) Investigating the roles of gene dosage and stem cell maintenance in the regulation of plant shoot and inflorescence architecture. PhD thesis, Cold Spring Harbor Laboratory.

Lindbäck, Louise N, Hu, Yuzhao, Ackermann, Amanda, Artz, Oliver, Pedmale, Ullas V (June 2022) UBP12 and UBP13 deubiquitinases destabilize the CRY2 blue light receptor to regulate Arabidopsis growth. Current Biology. ISSN 0960-9822

Lindsay, Penelope, Swentowsky, Kyle W, Jackson, David (December 2023) Cultivating Potential: Harnessing Plant Stem Cells for Agricultural Crop Improvement. Molecular Plant. ISSN 1674-2052

Lindsay, Penelope L, Ivanov, Sergey, Pumplin, Nathan, Zhang, Xinchun, Harrison, Maria J (September 2022) Distinct ankyrin repeat subdomains control VAPYRIN locations and intracellular accommodation functions during arbuscular mycorrhizal symbiosis. Nature Communications, 13 (1). p. 5228. ISSN 2041-1723

Lippman, Z. (November 2012) Talk from Zach Lippman at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Lippman, Z. B., Cohen, O., Alvarez, J. P., Abu-Abied, M., Pekker, I., Paran, I., Eshed, Y., Zamir, D. (November 2008) The Making of a Compound Inflorescence in Tomato and Related Nightshades. PLoS Biology, 6 (11). e288.

Liseron-Monfils, Christophe, Ware, Doreen (December 2015) Revealing gene regulation and associations through biological networks. Current Plant Biology, 3-4. pp. 30-39. ISSN 2214-6628

Lister, C., Jackson, D., Martin, C. (November 1993) Transposon-induced inversion in Antirrhinum modifies nivea gene expression to give a novel flower color pattern under the control of cycloidearadialis. Plant Cell, 5 (11). pp. 1541-53. ISSN 1040-4651 (Print)1040-4651

Liu, Yu, Li, Huinan, Liu, Jie, Wang, Yuebin, Jiang, Chenglin, Zhou, Ziqi, Zhuo, Lin, Li, Wenqiang, Fernie, Alisdair R, Jackson, David, Yan, Jianbing, Luo, Yun (May 2024) The additive function of YIGE2 and YIGE1 in regulating maize ear length. The Plant Journal. ISSN 0960-7412

Liu, Z. J., Kumari, S., Zhang, L. F., Zheng, Y. L., Ware, D. (June 2012) Characterization of miRNAs in Response to Short-Term Waterlogging in Three Inbred Lines of Zea mays. PLoS ONE, 7 (6). e39786. ISSN 1932-6203

Liu, H., Jian, L., Xu, J., Zhang, Q., Zhang, M., Jin, M., Peng, Y., Yan, J., Han, B., Liu, J., Gao, F., Liu, X., Huang, L., Wei, W., Ding, Y., Yang, X., Li, Z., Zhang, M., Sun, J., Bai, M., Song, W., Chen, H., Sun, X., Li, W., Lu, Y., Liu, Y., Zhao, J., Qian, Y., Jackson, D., Fernie, A.R., Yan, J. (May 2020) High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize. Plant Cell, 32 (5). pp. 1397-1413. ISSN 1040-4651

Liu, J., Seetharam, A.S., Chougule, K., Ou, S., Swentowsky, K.W., Gent, J.I., Llaca, V., Woodhouse, M.R., Manchanda, N., Presting, G.G., Kudrna, D., Alabady, M., Hirsch, C.N., Fengler, K.A., Ware, D., Michael, T.P., Hufford, M. B., Dawe, R.K. (May 2020) Gapless Assembly of Maize Chromosomes Using Long-Read Technologies. Genome Biology, 21 (1). p. 121. ISSN 1474-7596

Liu, Lei, Gallagher, Joseph, Arevalo, Edgar Demesa, Chen, Richelle, Skopelitis, Tara, Wu, Qingyu, Bartlett, Madelaine, Jackson, David (March 2021) Enhancing grain-yield-related traits by CRISPR-Cas9 promoter editing of maize CLE genes. Nature Plants, 7 (3). pp. 287-294. ISSN 2055-026X

Lodha, M., Marco, C. F., Timmermans, M. C. (March 2013) The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2. Genes & Development, 27 (6). pp. 596-601. ISSN 0890-9369

Lodha, M., Marco, C. F., Timmermans, M. C. P. (2008) Genetic and epigenetic regulation of stem cell homeostasis in plants. Cold Spring Harbor Symposia on Quantitative Biology, 73. pp. 243-51. ISSN 00917451 (ISSN)

Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R., Krainer, A. R., Barta, A. (April 1999) atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes & Development, 13 (8). pp. 987-1001. ISSN 0890-9369

Lopato, S., Mayeda, A., Krainer, A. R., Barta, A. (April 1996) Pre-mRNA splicing in plants: Characterization of Ser Arg splicing factors. Proceedings of the National Academy of Sciences of the United States of America, 93 (7). pp. 3074-3079. ISSN 0027-8424

Luyet, Basile J. (1932) Variation of the electric resistance of plant tissues for alternating currents of different frequencies during death. J Gen Physiol., 15 (3). pp. 283-287.

M

Ma, H. (December 1994) GTP-binding proteins in plants: new members of an old family. Plant Mol Biol, 26 (5). pp. 1611-36. ISSN 0167-4412 (Print)

Ma, H. (July 1993) Protein phosphorylation in plants: enzymes, substrates and regulators. Trends Genet, 9 (7). pp. 228-30. ISSN 0168-9525 (Print)

Ma, H. (January 1998) To be, or not to be, a flower--control of floral meristem identity. Trends in Genetics, 14 (1). pp. 26-32. ISSN 0168-9525

Ma, H. (1995) Use of cosmid libraries in plant transformations. Methods Mol Biol, 44. pp. 351-67. ISSN 1064-3745 (Print)

Ma, H., Weiss, C. A. (1995) In vitro analysis of G-protein functions. Methods Cell Biol, 49. pp. 471-85. ISSN 0091-679X (Print)

Ma, H., Yanofsky, M. F., Klee, H. J., Bowman, J. L., Meyerowitz, E. M. (August 1992) Vectors for plant transformation and cosmid libraries. Gene, 117 (2). pp. 161-7. ISSN 0378-1119 (Print)0378-1119 (Linking)

MacAlister, C. A., Bergmann, D. C. (March 2011) Sequence and function of basic helix-loop-helix proteins required for stomatal development in Arabidopsis are deeply conserved in land plants. Evolution & Development, 13 (2). pp. 182-192. ISSN 1520-541X

MacAlister, C. A., Ortiz-Ramirez, C., Becker, J. D., Feijo, J. A., Lippman, Z. B. (January 2016) Hydroxyproline O-arabinosyltransferase mutants oppositely alter tip growth in Arabidopsis thaliana and Physcomitrella patens. Plant J, 85 (2). pp. 193-208. ISSN 1365-313X (Electronic)0960-7412 (Linking)

Macalister, C. A., Park, S. J., Jiang, K., Marcel, F., Bendahmane, A., Izkovich, Y., Eshed, Y., Lippman, Z. B. (November 2012) Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene. Nat Genet. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

March, J. F., Pappin, D. J., Casey, R. (March 1988) Isolation and characterization of a minor legumin and its constituent polypeptides from Pisum sativum (pea). Biochem J, 250 (3). pp. 911-5. ISSN 0264-6021 (Print)0264-6021 (Linking)

Marco, C. F., Skopelitis, D. S., Timmermans, M. C. P. (January 2019) In Situ Localization of Small RNAs in Plants. Methods Mol Biol, 1932. pp. 159-173. ISSN 1064-3745

Marizzi, Christine, Florio, Antonia, Lee, Melissa, Khalfan, Mohammed, Ghiban, Cornel, Nash, Bruce, Dorey, Jenna, McKenzie, Sean, Mazza, Christine, Cellini, Fabiana, Baria, Carlo, Bepat, Ron, Cosentino, Lena, Dvorak, Alexander, Gacevic, Amina, Guzman-Moumtzis, Cristina, Heller, Francesca, Holt, Nicholas Alexander, Horenstein, Jeffrey, Joralemon, Vincent, Kaur, Manveer, Kaur, Tanveer, Khan, Armani, Kuppan, Jessica, Laverty, Scott, Lock, Camila, Pena, Marianne, Petrychyn, Ilona, Puthenkalam, Indu, Ram, Daval, Ramos, Arlene, Scoca, Noelle, Sin, Rachel, Gonzalez, Izabel, Thakur, Akansha, Usmanov, Husan, Han, Karen, Wu, Andy, Zhu, Tiger, Micklos, David Andrew (July 2018) DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists. PLoS One, 13 (7). e0199015. ISSN 1932-6203 (Public Dataset)

Maron, L. G., Guimaraes, C. T., Kirst, M., Albert, P. S., Birchler, J. A., Bradbury, P. J., Buckler, E. S., Coluccio, A. E., Danilova, T. V., Kudrna, D., Magalhaes, J. V., Pineros, M. A., Schatz, M. C., Wing, R. A., Kochian, L. V. (March 2013) Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America, 110 (13). pp. 5241-5246. ISSN 0027-8424

Marra, M., Kucaba, T., Sekhon, M., Hillier, L., Martienssen, R., Chinwalla, A., Crockett, J., Fedele, J., Grover, H., Gund, C., McCombie, W. R., McDonald, K., McPherson, J., Mudd, N., Parnell, L., Schein, J., Seim, R., Shelby, P., Waterston, R., Wilson, R. (1999) A map for sequence analysis of the Arabidopsis thaliana genome. Nature Genetics, 22 (3). pp. 265-270. ISSN 10614036 (ISSN)

Martienssen, R. (September 1997) Cell death: Fatal induction in plants. Current Biology, 7 (9). R534-R537. ISSN 0960-9822

Martienssen, R. (April 1998) Chromosomal imprinting in plants. Current Opinion in Genetics & Development, 8 (2). pp. 240-244. ISSN 0959-437X

Martienssen, R. (July 1996) Epigenetic phenomena: Paramutation and gene silencing in plants. Current Biology, 6 (7). pp. 810-813. ISSN 0960-9822

Martienssen, R., Baron, A. (March 1994) Coordinate suppression of mutations caused by Robertson's mutator transposons in maize. Genetics, 136 (3). pp. 1157-1170. ISSN 0016-6731

Martienssen, R., Dolan, L. (1998) Patterns of Vegetative Development. In: Arabidopsis. Sheffield Academic Press, Sheffield, England. ISBN 0849397324

Martienssen, R., McCombie, W. R. (2001) The first plant genome. Cell, 105 (5). pp. 571-574. ISSN 00928674 (ISSN)

Martienssen, R. A. (November 2004) Crop Plant Genome sequence: What is it good for? Crop Science, 44 (6). pp. 1898-1899. ISSN 0011-183X

Martienssen, R. A. (1996) Epigenetic Silencing of Mu Transposable Elements in Maize. In: Epigenetic Mechanisms of Gene Regulation. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., p. 593. ISBN 0270-1847

Martienssen, R. A. (March 1998) Functional genomics: Probing plant gene function and expression with transposons. Proceedings of the National Academy of Sciences of the United States of America, 95 (5). pp. 2021-2026. ISSN 0027-8424

Martienssen, R. A. (2000) Weeding out the genes: the Arabidopsis genome project. Functional & Integrative Genomics, 1 (1). pp. 2-11. ISSN 1438-793X

Martienssen, R. A., Colot, V. (August 2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science, 293 (5532). pp. 1070-1074. ISSN 0036-8075

Martienssen, R. A., Kloc, A., Slotkin, R. K., Tanurdzic, M. (2008) Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor symposia on quantitative biology, 73. pp. 265-71. ISSN 1943-4456 (Electronic)0091-7451 (Linking)

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (2004) Sequencing the maize genome. Current Opinion in Plant Biology, 7 (2). pp. 102-107. ISSN 13695266 (ISSN)

Maruyama, Keizo (1961) Electron microscope observation on the development of chloroplasts of Avena and chlorophyll-deficient mutants. Cytologia, 26. p. 105.

Maruyama, Keizo, Gay, Helen, Kaufmann, Berwind Petersen (1962) Development of the Golgi body in the Tradescantia pollen grain. American Journal of Botany, 49 (6). p. 662.

Maruyama, Keizo, Gay, Helen, Kaufmann, Berwind Petersen (1962) Development of the vacuole in the stigma cell of Tradescantia paludosa. American Journal of Botany, 49 (6, Par). p. 662.

Masuda, H. P., Cabral, L. M., De Veylder, L., Tanurdzic, M., de Almeida Engler, J., Geelen, D., Inze, D., Martienssen, R. A., Ferreira, P. C., Hemerly, A. S. (October 2008) ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO Journal, 27 (20). pp. 2746-56. ISSN 1460-2075 (Electronic)0261-4189 (Linking)

Mateo-Elizalde, Cristian, Lynn, Jason, Ernst, Evan, Martienssen, Rob (February 2023) Duckweeds. Current Biology, 33 (3). R89-R91. ISSN 0960-9822

May, B. P., Martienssen, R. A. (2003) Transposon mutagenesis in the study of plant development. Critical Reviews in Plant Sciences, 22 (1). pp. 1-35. ISSN 0735-2689

May, P., Liao, W., Wu, Y., Shuai, B., McCombie, W. R., Zhang, M. Q., Liu, Q. A. (July 2013) The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development. Nature Communications, 4. ISSN 20411723

Mayer, K., Schuller, C., Wambutt, R., Murphy, G., Volckaert, G., Pohl, T., Dusterhoft, A., Stiekema, W., Entian, K. D., Terryn, N., Harris, B., Ansorge, W., Brandt, P., Grivell, L., Rieger, M., Weichselgartner, M., de Simone, V., Obermaier, B., Mache, R., Muller, M., Kreis, M., Delseny, M., Puigdomenech, P., Watson, M., Schmidtheini, T., Reichert, B., Portatelle, D., Perez-Alonso, M., Boutry, M., Bancroft, I., Vos, P., Hoheisel, J., Zimmermann, W., Wedler, H., Ridley, P., Langham, S. A., McCullagh, B., Bilham, L., Robben, J., Van der Schueren, J., Grymonprez, B., Chuang, Y. J., Vandenbussche, F., Braeken, M., Weltjens, I., Voet, M., Bastiaens, I., Aert, R., Defoor, E., Weitzenegger, T., Bothe, G., Ramsperger, U., Hilbert, H., Braun, M., Holzer, E., Brandt, A., Peters, S., van Staveren, M., Dirske, W., Mooijman, P., Klein Lankhorst, R., Rose, M., Hauf, J., Kotter, P., Berneiser, S., Hempel, S., Feldpausch, M., Lamberth, S., Van den Daele, H., De Keyser, A., Buysshaert, C., Gielen, J., Villarroel, R., De Clercq, R., Van Montagu, M., Rogers, J., Cronin, A., Quail, M., Bray-Allen, S., Clark, L., Doggett, J., Hall, S., Kay, M., Lennard, N., McLay, K., Mayes, R., Pettett, A., Rajandream, M. A., Lyne, M., Benes, V., Rechmann, S., Borkova, D., Blocker, H., Scharfe, M., Grimm, M., Lohnert, T. H., Dose, S., de Haan, M., Maarse, A., Schafer, M., Müller-Auer, S., Gabel, C., Fuchs, M., Fartmann, B., Granderath, K., Dauner, D., Herzl, A., Neumann, S., Argiriou, A., Vitale, D., Liguori, R., Piravandi, E., Massenet, O., Quigley, F., Clabauld, G., Mundlein, A., Felber, R., Schnabl, S., Hiller, R., Schmidt, W., Lecharny, A., Aubourg, S., Chefdor, F., Berger, C., Montfort, A., Casacuberta, E., Gibbons, T., Weber, N., Vandenbol, M., Bargues, M., Terol, J., Perez-Perez, A., Purnelle, B., Bent, E., Johnson, S., Tacon, D., Jesse, T., Heijnen, L., Schwarz, S., Scholler, P., Heber, S., Francs, P., Bielke, C., Frishman, D., Haase, D., Lemcke, K., Mewes, H. W., Stocker, S., Zaccaria, P., Bevan, M., Wilson, R. K., de la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Abu-Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Ryan, E., Andrews, S., Geisel, C., Layman, D., Du, H., Ali, J., Berghoff, A., Jones, K., Drone, K., Cotton, M., Joshu, C., Antonoiu, B., Zidanic, M., Strong, C., Sun, H., Lamar, B., Yordan, C., Ma, P., Zhong, J., Preston, R., Vil, D., Shekher, M., Matero, A., Shah, R., Swaby, I.K., O'Shaughnessy, A., Rodriguez, M., Hoffmann, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Martienssen, R., McCombie, W. R. (December 1999) Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature, 402 (6763). pp. 769-77. ISSN 0028-0836 (Print)0028-0836 (Linking)

McClintock, Barbara (1931) Cytological observations of deficiencies involving known genes, translocations and an inversion in Zea mays. University of Missouri Agricultural Experiment Station Research Bulletin, 163. pp. 3-30.

McClintock, Barbara (March 1929) A cytological and genetical study of triploid maize. Genetics, 14 (2). 180=222.

McCombie, W. R., De la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Yordan, C., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Simorowski, J., May, B., Ma, P., Preston, R., Vil, D., Lei, H. S., Shekher, M., Matero, A., Shah, R., Swaby, I., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Wilson, R. K., Martienssen, R. (2000) The complete sequence of a heterochromatic island from a higher eukaryote. Cell, 100 (3). pp. 377-386. ISSN 00928674 (ISSN)

McKain, M. R., Wickett, N., Zhang, Y., Ayyampalayam, S., McCombie, W. R., Chase, M. W., Pires, J. C., dePamphilis, C. W., Leebens-Mack, J. (February 2012) Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). American Journal of Botany, 99 (2). pp. 397-406. ISSN 0002-9122

McKay, S. J., Skidmore, E. J., LaRose, C. J., Mercer, A. W., Noutsos, C. (October 2013) Cloud Computing with iPlant Atmosphere. Curr Protoc Bioinformatics, 43. 9 15 1-20. ISSN 1934-340X (Electronic)1934-3396 (Linking)

McMullen, M. D., Kresovich, S., Villeda, Hector S., Bradbury, P. J., Li, H., Sun, Q., Flint-Garcia, S., Thornsberry, J., Acharya, C. B., Bottoms, C., Brown, P. J., Browne, C., Eller, M., Guill, K., Harjes, C., Kroon, D. E., Lepak, N.., Mitchell, S. E., Peterson, B., Pressoir, G., Romero, S., Rosas, M. O., Salvo, S., Yates, H., Hanson, M., Jones, E. G., Smith, S., Glaubitz, J. C., Goodman, M. M., Ware, D. H., Holland, J. B., Buckler, E. S. (August 2009) Genetic Properties of the Maize Nested Association Mapping Population. Science, 325 (5941). pp. 737-740.

Mehravi, Shaghayegh, Ranjbar, Gholam Ali, Mirzaghaderi, Ghader, Severn-Ellis, Anita Alice, Scheben, Armin, Edwards, David, Batley, Jacqueline (June 2021) De Novo SNP Discovery and Genotyping of Iranian Pimpinella Species Using ddRAD Sequencing. Agronomy, 11 (7). p. 1342. ISSN 2073-4395

Meier, I., Xu, X. M., Brkljacic, J., Zhao, Q., Wang, H. J. (August 2008) Going green: plants' alternative way to position the Ran gradient. Journal of Microscopy-Oxford, 231 (2). pp. 225-233. ISSN 0022-2720

Merchant, N., Lyons, E., Goff, S., Vaughn, M., Ware, D., Micklos, D., Antin, P. (January 2016) The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences. PLoS Biol, 14 (1). e1002342. ISSN 1545-7885 (Electronic)1544-9173 (Linking)

Meyers, B. C., Axtell, M. J., Bartel, B., Bartel, D. P., Baulcombe, D., Bowman, J. L., Cao, X., Carrington, J. C., Chen, X., Green, P. J., Griffiths-Jones, S., Jacobsen, S. E., Mallory, A. C., Martienssen, R. A., Poethig, R. S., Qi, Y., Vaucheret, H., Voinnet, O., Watanabe, Y., Weigel, D., Zhu, J. K. (December 2008) Criteria for annotation of plant MicroRNAs. The Plant cell, 20 (12). pp. 3186-90. ISSN 1040-4651 (Print)1040-4651 (Linking)

Michael, Todd P, Ernst, Evan, Hartwick, Nolan, Chu, Philomena, Bryant, Douglas, Gilbert, Sarah, Ortleb, Stefan, Baggs, Erin L, Sree, K Sowjanya, Appenroth, Klaus J, Fuchs, Joerg, Jupe, Florian, Sandoval, Justin P, Krasileva, Ksenia V, Borisjuk, Ljudmylla, Mockler, Todd C, Ecker, Joseph R, Martienssen, Robert A, Lam, Eric (December 2020) Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Research, 31 (2). pp. 225-238. ISSN 1088-9051

Ming, R., Hou, S., Feng, Y., Yu, Q., Dionne-Laporte, A., Saw, J. H., Senin, P., Wang, W., Ly, B. V., Lewis, K. L. T., Salzberg, S. L., Feng, L., Jones, M. R., Skelton, R. L., Murray, J. E., Chen, C., Qian, W., Shen, J., Du, P., Eustice, M., Tong, E., Tang, H., Lyons, E., Paull, R. E., Michael, T. P., Wall, K., Rice, D. W., Albert, H., Wang, M. L., Zhu, Y. J., Schatz, M., Nagarajan, N., Acob, R. A., Guan, P., Blas, A., Wai, C. M., Ackerman, C. M., Ren, Y., Liu, C., Wang, J., Na, J. K., Shakirov, E. V., Haas, B., Thimmapuram, J., Nelson, D., Wang, X., Bowers, J. E., Gschwend, A. R., Delcher, A. L., Singh, R., Suzuki, J. Y., Tripathi, S., Neupane, K., Wei, H., Irikura, B., Paidi, M., Jiang, N., Zhang, W., Presting, G., Windsor, A., Navajas-Pérez, R., Torres, M. J., Feltus, F. A., Porter, B., Li, Y., Burroughs, A. M., Luo, M. C., Liu, L., Christopher, D. A., Mount, S. M., Moore, P. H., Sugimura, T., Jiang, J., Schuler, M. A., Friedman, V., Mitchell-Olds, T., Shippen, D. E., Depamphilis, C. W., Palmer, J. D., Freeling, M., Paterson, A. H., Gonsalves, D., Wang, L., Alam, M. (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature, 452 (7190). pp. 991-996. ISSN 00280836 (ISSN)

Ming, R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., Lyons, E., Wang, M. L., Chen, J., Biggers, E., Zhang, J., Huang, L., Zhang, L., Miao, W., Zhang, J., Ye, Z., Miao, C., Lin, Z., Wang, H., Zhou, H., Yim, W. C., Priest, H. D., Zheng, C., Woodhouse, M., Edger, P. P., Guyot, R., Guo, H. B., Guo, H., Zheng, G., Singh, R., Sharma, A., Min, X., Zheng, Y., Lee, H., Gurtowski, J., Sedlazeck, F. J., Harkess, A., McKain, M. R., Liao, Z., Fang, J., Liu, J., Zhang, X., Zhang, Q., Hu, W., Qin, Y., Wang, K., Chen, L. Y., Shirley, N., Lin, Y. R., Liu, L. Y., Hernandez, A. G., Wright, C. L., Bulone, V., Tuskan, G. A., Heath, K., Zee, F., Moore, P. H., Sunkar, R., Leebens-Mack, J. H., Mockler, T., Bennetzen, J. L., Freeling, M., Sankoff, D., Paterson, A. H., Zhu, X., Yang, X., Smith, J. A., Cushman, J. C., Paull, R. E., Yu, Q. (November 2015) The pineapple genome and the evolution of CAM photosynthesis. Nat Genet, 47. pp. 1435-1442. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Mizukami, Y., Huang, H., Tudor, M., Hu, Y., Ma, H. (May 1996) Functional domains of the floral regulator AGAMOUS: characterization of the DNA binding domain and analysis of dominant negative mutations. Plant Cell, 8 (5). pp. 831-45. ISSN 1040-4651 (Print)

Mizukami, Y., Ma, H. (October 1992) Ectopic expression of the floral homeotic gene AGAMOUS in transgenic Arabidopsis plants alters floral organ identity. Cell, 71 (1). pp. 119-31. ISSN 0092-8674 (Print)0092-8674 (Linking)

Mizukami, Y., Ma, H. (August 1995) Separation of AG function in floral meristem determinacy from that in reproductive organ identity by expressing antisense AG RNA. Plant Mol Biol, 28 (5). pp. 767-84. ISSN 0167-4412 (Print)

Mohanasundaram, Boominathan, Palit, Shirsa, Bhide, Amey J, Pala, Madhusmita, Rajoria, Kanishka, Girigosavi, Payal, Banerjee, Anjan K (February 2024) PpSCARECROW1 (PpSCR1) regulates leaf blade and mid-vein development in Physcomitrium patens. Plant Molecular Biology, 114 (1). ISSN 0167-4412 (Public Dataset)

Monaco, M. K., Sen, T. Z., Dharmawardhana, P. D., Ren, L., Schaeffer, M., Naithani, S., Amarasinghe, V., Thomason, J., Harper, L., Gardiner, J., Cannon, E. K. S., Lawrence, C. J., Ware, D., Jaiswal, P. (March 2013) Maize Metabolic Network Construction and Transcriptome Analysis. Plant Genome, 6 (1). ISSN 1940-3372

Monaco, M. K., Stein, J., Naithani, S., Wei, S., Dharmawardhana, P., Kumari, S., Amarasinghe, V., Youens-Clark, K., Thomason, J., Preece, J., Pasternak, S., Olson, A., Jiao, Y., Lu, Z., Bolser, D., Kerhornou, A., Staines, D., Walts, B., Wu, G., D'Eustachio, P., Haw, R., Croft, D., Kersey, P. J., Stein, L., Jaiswal, P., Ware, D. (January 2014) Gramene 2013: comparative plant genomics resources. Nucleic Acids Research, 42 (Databa). D1193-9. ISSN 0305-1048

Moreau, M., Westlake, T., Zampogna, G., Popescu, G., Tian, M., Noutsos, C., Popescu, S. (November 2013) The Arabidopsis oligopeptidases TOP1 and TOP2 are salicylic acid targets that modulate SA-mediated signaling and the immune response. Plant Journal, 76 (4). pp. 603-614. ISSN 09607412

Muskett, P. R., Clissold, L., Marocco, A., Springer, P. S., Martienssen, R., Dean, C. (June 2003) A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome. Plant physiology, 132 (2). pp. 506-16. ISSN 0032-0889 (Print)0032-0889 (Linking)

Mylona, P., Linstead, P., Martienssen, R., Dolan, L. (September 2002) SCHIZORIZA controls an asymmetric cell division and restricts epidermal identity in the Arabidopsis root. Development, 129 (18). pp. 4327-4334. ISSN 0950-1991

N

Nabours, Robert K. (1930) Review of Roberts' "Plant hybridization before Mendel.". Science, 72 (1863). pp. 274-275.

Naish, Matthew, Alonge, Michael, Wlodzimierz, Piotr, Tock, Andrew J, Abramson, Bradley W, Schmücker, Anna, Mandáková, Terezie, Jamge, Bhagyshree, Lambing, Christophe, Kuo, Pallas, Yelina, Natasha, Hartwick, Nolan, Colt, Kelly, Smith, Lisa M, Ton, Jurriaan, Kakutani, Tetsuji, Martienssen, Robert A, Schneeberger, Korbinian, Lysak, Martin A, Berger, Frédéric, Bousios, Alexandros, Michael, Todd P, Schatz, Michael C, Henderson, Ian R (November 2021) The genetic and epigenetic landscape of the Arabidopsis centromeres. Science, 374 (6569). eabi7489. ISSN 0036-8075

Naithani, S., Gupta, P., Preece, J., D'Eustachio, P., Elser, J. L., Garg, P., Dikeman, D. A., Kiff, J., Cook, J., Olson, A., Wei, S., Tello-Ruiz, M. K., Mundo, A. F., Munoz-Pomer, A., Mohammed, S., Cheng, T., Bolton, E., Papatheodorou, I., Stein, L., Ware, D., Jaiswal, P. (November 2019) Plant Reactome: a knowledgebase and resource for comparative pathway analysis. Nucleic Acids Res, 48. pp. 1093-1103. ISSN 0305-1048 (Public Dataset)

Naithani, S., Preece, J., D'Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. M., Petryszak, R., Stein, L. D., Ware, D., Jaiswal, P. (October 2016) Plant Reactome: a resource for plant pathways and comparative analysis. Nucleic Acids Res, 45 (D1). D1029-D1039. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Nawy, T., Lukowitz, W., Bayer, M. (February 2008) Talk global, act local - patterning the Arabidopsis embryo. Current Opinion in Plant Biology, 11 (1). pp. 28-33. ISSN 1369-5266

Nie, Yongxin, Wang, Hui, Zhang, Guan, Ding, Haiping, Han, Beibei, Liu, Lei, Shi, Jian, Du, Jiyuan, Li, Xiaohu, Li, Xinzheng, Zhao, Yajie, Zhang, Xiaocong, Liu, Changlin, Weng, Jianfeng, Li, Xinhai, Zhang, Xiansheng, Zhao, Xiangyu, Pan, Guangtang, Jackson, David, Li, Qin-Bao, Stinard, Philip S, Arp, Jennifer, Sachs, Martin M, Moose, Steven, Hunter, Charles T, Wu, Qingyu, Zhang, Zhiming (January 2024) The maize PLASTID TERMINAL OXIDASE (PTOX) locus controls the carotenoid content of kernels. The Plant Journal. ISSN 0960-7412 (Public Dataset)

Nie, Shujun, Wang, Bo, Ding, Haiping, Lin, Haijian, Zhang, Li, Li, Qigui, Wang, Yujiao, Zhang, Bin, Liang, Anping, Zheng, Qi, Wang, Hui, Lv, Huayang, Zhu, Kun, Jia, Minghui, Wang, Xiaotong, Du, Jiyuan, Zhao, Runtai, Jiang, Zhenzhen, Xia, Caina, Qiao, Zhenghao, Li, Xiaohu, Liu, Boyan, Zhu, Hongbo, An, Rong, Li, Yucui, Jiang, Qian, Chen, Benfang, Zhang, Hongkai, Wang, Dening, Tang, Changxiao, Yuan, Yang, Dai, Jie, Zhan, Jing, He, Weiqiang, Wang, Xuebo, Shi, Jian, Wang, Bin, Gong, Min, He, Xiujing, Li, Peng, Huang, Li, Li, Hui, Pan, Chao, Huang, Hong, Yuan, Guangsheng, Lan, Hai, Nie, Yongxin, Li, Xinzheng, Zhao, Xiangyu, Zhang, Xiansheng, Pan, Guangtang, Wu, Qingyu, Xu, Fang, Zhang, Zhiming (July 2021) Genome assembly of the Chinese maize elite inbred line RP125 and its EMS mutant collection provide new resources for maize genetics research and crop improvement. The Plant journal : for cell and molecular biology. ISSN 1365-313X

Nogueira, F. T., Madi, S., Chitwood, D. H., Juarez, M. T., Timmermans, M. C. P. (April 2007) Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev, 21 (7). pp. 750-5. ISSN 0890-9369 (Print)

Nogueira, F. T. S., Chitwood, D. H., Madi, S., Ohtsu, K., Schnable, P. S., Scanlon, M. J., Timmermans, M. C. P. (January 2009) Regulation of Small RNA Accumulation in the Maize Shoot Apex. Plos Genetics, 5 (1). e1000320. ISSN 1553-7390

Nogueira, F. T. S., Timmermans, M. C. (November 2007) An Interplay Between Small Regulatory RNAs Patterns Leaves. Plant Signaling & Behavior, 2 (6). pp. 519-21. ISSN 1559-2316 (Print)

Nogueira, F. T., Sarkar, A. K., Chitwood, D. H., Timmermans, M. C. (2006) Organ Polarity in Plants Is Specified through the Opposing Activity of Two Distinct Small Regulatory RNAs. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 157-64. ISSN 00917451 (ISSN)

Norén Lindbäck, Louise, Ji, Yan, Cervela-Cardona, Luis, Jin, Xu, Pedmale, Ullas V, Strand, Åsa (August 2023) An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis. New Phytologist. ISSN 0028-646X

Noutsos, C., Perera, A. M., Nikolau, B. J., Seaver, S. M., Ware, D. H. (May 2015) Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis. PLoS One, 10 (5). e0124501. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Nowack, Moritz K., Harashima, Hirofumi, Dissmeyer, Nico, Zhao, Xin'Ai, Bouyer, Daniel, Weimer, Annika K., De Winter, Freya, Yang, Fang, Schnittger, Arp (May 2012) Genetic Framework of Cyclin-Dependent Kinase Function in Arabidopsis. Developmental Cell, 22 (5). pp. 1030-1040. ISSN 1534-5807

Ntakirutimana, Fabrice, Tranchant-Dubreuil, Christine, Cubry, Philippe, Chougule, Kapeel, Zhang, Jianwei, Wing, Rod A, Adam, Hélène, Lorieux, Mathias, Jouannic, Stefan (August 2023) Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud. G3: Genes, Genomes, Genetics. jkad174. ISSN 2160-1836 (Public Dataset)

O

Oliver, S. L., Lenards, A. J., Barthelson, R. A., Merchant, N., McKay, S. J. (June 2013) Using the iplant collaborative discovery environment. Current protocols in bioinformatics (SUPPL.). 1.22. ISSN 19343396 (ISSN)

Olson, A., Klein, R. R., Dugas, D. V., Lu, Z. Y., Regulski, M., Klein, P. E., Ware, D. (July 2014) Expanding and Vetting Sorghum bicolor Gene Annotations through Transcriptome and Methylome Sequencing. Plant Genome, 7 (2). p. 20. ISSN 1940-3372

Omary, Moutasem, Gil-Yarom, Naama, Yahav, Chen, Steiner, Evyatar, Hendelman, Anat, Efroni, Idan (March 2022) A conserved superlocus regulates above- and belowground root initiation. Science, 375 (6584). eabf4368. ISSN 0036-8075

Ong-Abdullah, M., Ordway, J. M., Jiang, N., Ooi, S. E., Kok, S. Y., Sarpan, N., Azimi, N., Hashim, A. T., Ishak, Z., Rosli, S. K., Malike, F. A., Bakar, N. A., Marjuni, M., Abdullah, N., Yaakub, Z., Amiruddin, M. D., Nookiah, R., Singh, R., Low, E. L., Chan, K. L., Azizi, N., Smith, S. W., Bacher, B., Budiman, M. A., Van Brunt, A., Wischmeyer, C., Beil, M., Hogan, M., Lakey, N., Lim, C. C., Arulandoo, X., Wong, C. K., Choo, C. N., Wong, W. C., Kwan, Y. Y., Alwee, S. S., Sambanthamurthi, R., Martienssen, R. A. (September 2015) Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature, 525. pp. 533-537. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Ori, N., Juarez, M. T., Jackson, D. P, Yamaguchi, J., Banowetz, G. M., Hake, S. (1999) Leaf senescence is delayed in tobacco plants expressing the maize homeobox gene knotted1 under the control of a senescence-activated promoter. Plant Cell, 11 (6). pp. 1073-1080. ISSN 10404651 (ISSN)

Ortiz-Ramírez, Carlos, Guillotin, Bruno, Xu, Xiaosa, Rahni, Ramin, Zhang, Sanqiang, Yan, Zhe, Coqueiro Dias Araujo, Poliana, Demesa-Arevalo, Edgar, Lee, Laura, Van Eck, Joyce, Gingeras, Thomas R, Jackson, David, Gallagher, Kimberly L, Birnbaum, Kenneth D (December 2021) Ground tissue circuitry regulates organ complexity in maize and Setaria. Science, 374 (6572). pp. 1247-1252. ISSN 0036-8075

Osborn, T. C., Pires, J. C., Birchler, J. A., Auger, D. L., Chen, Z. J., Lee, H. S., Comai, L., Madlung, A., Doerge, R. W., Colot, V., Martienssen, R. A. (March 2003) Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics, 19 (3). pp. 141-7. ISSN 0168-9525

Osterbaan, Larissa J, Hoyle, Victoria, Curtis, Michelle, DeBlasio, Stacy, Rivera, Keith D, Heck, Michelle, Fuchs, Marc (May 2021) Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of by affinity purification and tandem mass spectrometry. The Journal of general virology, 102 (5). ISSN 1465-2099

Ou, Shujun, Collins, Tyler, Qiu, Yinjie, Seetharam, Arun, Menard, Claire, Manchanda, Nancy, Gent, Jonathan, Schatz, Michael, Anderson, Sarah, Hufford, Matthew, Hirsch, Candice (2022) Differences in activity and stability drive transposable element variation in tropical and temperate maize. (Submitted)

Ou, Shujun, Scheben, Armin, Collins, Tyler, Qiu, Yinjie, Seetharam, Arun S, Menard, Claire C, Manchanda, Nancy, Gent, Jonathan I, Schatz, Michael C, Anderson, Sarah N, Hufford, Matthew B, Hirsch, Candice N (September 2024) Differences in activity and stability drive transposable element variation in tropical and temperate maize. Genome Research. ISSN 1088-9051

Ou, S. J., Liu, J. N., Chougule, K. M., Fungtammasan, A., Seetharam, A.S., Stein, J. C., Llaca, V., Manchanda, N., Gilbert, A. M., Wei, S. R., Chin, C. S., Hufnagel, D. E., Pedersen, S., Snodgrass, S. J., Fengler, K., Woodhouse, M., Walenz, B. P., Koren, S., Phillippy, A. M., Hannigan, B. T., Dawe, R. K., Hirsch, C. N., Hufford, M. B., Ware, D. (May 2020) Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature Communications, 11 (1). p. 2288. ISSN 2041-1723

P

Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A., McCombie, W. R. (December 2003) Maize genome sequencing by methylation filtrations. Science, 302 (5653). pp. 2115-2117. ISSN 0036-8075

Pan, X. K., Liu, H., Clarke, J., Jones, J., Bevan, M., Stein, L. (February 2003) ATIDB: Arabidopsis thaliana insertion database. Nucleic Acids Research, 31 (4). pp. 1245-1251. ISSN 0305-1048

Parent, J. S., Borges, F., Shimada, A., Martienssen, R. A. (June 2020) Small RNA Function in Plants: From Chromatin to the Next Generation. Cold Spring Harbor Symposia on Quantitative Biology. ISSN 00917451

Park, S. H., Chin, H. G., Cho, M. J., Martienssen, R. A., Han, C. D. (April 2000) Inhibitor of striate conditionally suppresses cell proliferation in variegated maize. Genes & Development, 14 (8). pp. 1005-1016. ISSN 0890-9369

Parry, G, Provart, NJ, Brady, SM, Uzilday, B, Adams, K, Araújo, W, Aubourg, S, Baginsky, S, Bakker, E, Bärenfaller, K, Batley, J, Beale, M, Beilstein, M, Belkhadir, Y, Mendel, G, Berardini, T, Bergelson, J, Blanco-Herrera, F, Brady, S, Braun, HP, Briggs, S, Brownfield, L, Cardarelli, M, Castellanos-Uribe, M, Coruzzi, G, Dassanayake, M, De Jaeger, G, Dilkes, B, Doherty, C, Ecker, J, Edger, P, Edwards, D, El Kasmi, F, Eriksson, M, Exposito-Alonso, M, Falter-Braun, P, Fernie, A, Ferro, M, Fiehn, O, Friesner, J, Greenham, K, Guo, Y, Hamann, T, Hancock, A, Hauser, MT, Heazlewood, J, Ho, CH, Hõrak, H, Huala, E, Hwang, I, Iuchi, S, Jaiswal, P, Jakobson, L, Jiang, Y, Jiao, Y, Jones, A, Kadota, Y, Khurana, J, Kliebenstein, D, Knee, E, Kobayashi, M, Koch, M, Krouk, G, Larson, T, Last, R, Lepiniec, L, Li, S, Lurin, C, Lysak, M, Maere, S, Malinowski, R, Maumus, F, May, S, Mayer, K, Mendoza-Cozatl, D, Mendoza-Poudereux, I, Micol, JL, Millar, H, Mock, HP, Mukhtar, K, Mukhtar, S, Murcha, M, Nakagami, H, Nakamura, Y, Nicolov, L, Nikolau, B, Nowack, M, Nunes-Nesi, A, Palmgren, M, Parry, G, Patron, N, Peck, S, Pedmale, U, Perrot-Rechenmann, C, Pieruschka, R, Pío-Beltrán, J, Pires, JC, Provart, N, Rajjou, L, Reiser, L (July 2020) Current status of the multinational Arabidopsis community. Plant Direct, 4 (7). ISSN 2475-4455

Passalacqua, Michael John, Gillis, Jesse (November 2023) Coexpression enhances cross-species integration of scRNA-seq across diverse plant species. bioRxiv. (Submitted)

Passalacqua, Michael John, Gillis, Jesse (June 2024) Coexpression enhances cross-species integration of single-cell RNA sequencing across diverse plant species. Nature Plants. ISSN 2055-0278 (Public Dataset)

Paszkowski, J., Martienssen, R. A. (November 2012) Cell signaling and gene regulation. Current Opinion in Plant Biology, 15 (5). pp. 493-495. ISSN 1369-5266

Paterson, A. H., Bowers, J. E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T., Poliakov, A., Schmutz, J., Spannagl, M., Tang, H., Wang, X., Wicker, T., Bharti, A. K., Chapman, J., Feltus, F. A., Gowik, U., Grigoriev, I. V., Lyons, E., Maher, C. A., Martis, M., Narechania, A., Otillar, R. P., Penning, B. W., Salamov, A. A., Wang, Y., Zhang, L., Carpita, N. C., Freeling, M., Gingle, A. R., Hash, C. T., Keller, B., Klein, P., Kresovich, S., McCann, M. C., Ming, R., Peterson, D. G., Mehboob ur, R., Ware, D. H., Westhoff, P., Mayer, K. F. X., Messing, J., Rokhsar, D. S. (January 2009) The Sorghum bicolor genome and the diversification of grasses. Nature, 457 (7229). pp. 551-556.

Paul, Saikat, Jackson, David, Kitagawa, Munenori (April 2024) Tracking the messengers: Emerging advances in mRNA-based plant communication. Current Opinion in Plant Biology, 79. p. 102541. ISSN 1369-5266

Pautler, M., Tanaka, W., Hirano, H. Y., Jackson, D. (March 2013) Grass meristems I: Shoot apical meristem maintenance, axillary meristem determinacy and the floral transition. Plant and Cell Physiology, 54 (3). pp. 302-312. ISSN 00320781 (ISSN)

Pedmale, U. V., Celaya, R. B., Liscum, E. (2010) Phototropism: mechanism and outcomes. Arabidopsis Book, 8. e0125. ISSN 1543-8120

Pedmale, U. V., Huang, S. S., Zander, M., Cole, B. J., Hetzel, J., Ljung, K., Reis, P. A., Sridevi, P., Nito, K., Nery, J. R., Ecker, J. R., Chory, J. (January 2016) Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell, 164 (1-2). pp. 233-45. ISSN 0092-8674

Pedmale, U. V., Liscum, E. (July 2007) Regulation of phototropic signaling in Arabidopsis via phosphorylation state changes in the phototropin 1-interacting protein NPH3. J Biol Chem, 282 (27). pp. 19992-20001. ISSN 0021-9258 (Print)0021-9258

Penning, B. W., Hunter, C. T., Tayengwa, R., Eveland, A. L., Dugard, C. K., Olek, A. T., Vermerris, W., Koch, K. E., McCarty, D. R., Davis, M. F., Thomas, S. R., McCann, M. C., Carpita, N. C. (December 2009) Genetic resources for maize cell wall biology. Plant Physiology, 151 (4). pp. 1703-1728.

Pepenella, Sharon, Hackett, Jennifer, Fernandez-Marco, Cristina, Petracca, Jeffry, Marizzi, Christine, Nash, Bruce, Micklos, David A (April 2024) A Rapid, Equipment-Free DNA Isolation Method for DNA Barcoding. Methods in molecular biology (Clifton, N.J.), 2744. pp. 517-523. ISSN 1064-3745

Petersen, M., Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B., Mundy, J. (December 2000) Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance. Cell, 103 (7). pp. 1111-1120. ISSN 0092-8674

Pham, Vinh Ngoc, Xu, Xiaosa, Huq, Enamul (December 2018) Molecular bases for the constitutive photomorphogenic phenotypes in Arabidopsis. Development, 145 (23). dev169870. ISSN 0950-1991 (Public Dataset)

Pierpoint, W. S., Tatham, A. S., Pappin, D. J. C. (1987) Identification of the virus-induced protein of tobacco leaves that resembles the sweet-protein thaumatin. Physiological and Molecular Plant Pathology, 31 (2). pp. 291-298. ISSN 0885-5765

Pinon, V., Etchells, J. P., Rossignol, P., Collier, S. A., Arroyo, J. M., Martienssen, R. A., Byrne, M. E. (April 2008) Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development, 135 (7). pp. 1315-24. ISSN 0950-1991 (Print)0950-1991 (Linking)

Plavskin, Y., Timmermans, M. C. (January 2013) Small RNA-Regulated Networks and the Evolution of Novel Structures in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 77. ISSN 00917451 (ISSN)

Plavskin, Yevgeniy (August 2013) Regulation of the auxin response by an ancient small RNA pathway. PhD thesis, Cold Spring Harbor Laboratory.

Popescu, G. V., Noutsos, C., Popescu, S. C. (April 2016) Big Data in Plant Science: Resources and Data Mining Tools for Plant Genomics and Proteomics. Methods Mol Biol, 1415. pp. 533-547. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Pruitt, R. E., Bowman, J. L., Grossniklaus, U. (March 2003) Plant genetics: a decade of integration. Nature Genetics, 33. pp. 294-304. ISSN 1061-4036

Pruitt, R. E., Vielle-Calzada, J. P., Ploense, S. E., Grossniklaus, U., Lolle, S. J. (February 2000) FIDDLEHEAD, a gene required to suppress epidermal cell interactions in Arabidopsis, encodes a putative lipid biosynthetic enzyme. Proceedings of the National Academy of Sciences of the United States of America, 97 (3). pp. 1311-1316. ISSN 0027-8424

Pujar, An., Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, Sh., Stevens, P., Zapata, F., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L. D., Ware, D. H., McCouch, S. (October 2006) Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology, 142 (2). pp. 414-428. ISSN 00320889

Q

Qi, Yijun, Hannon, Gregory J. (October 2005) Uncovering RNAi mechanisms in plants: biochemistry enters the foray. FEBS Lett, 579 (26). pp. 5899-903. ISSN 0014-5793 (Print)

Quadrana, L., Bortolini Silveira, A., Mayhew, G. F., LeBlanc, C., Martienssen, R. A., Jeddeloh, J. A., Colot, V. (June 2016) The Arabidopsis thaliana mobilome and its impact at the species level. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

R

Rabinowicz, P. D. (July 2000) Are obese plant genomes on a diet? Genome Research, 10 (7). pp. 893-894. ISSN 1088-9051

Rabinowicz, P. D., Palmer, L. E., May, B. P., Hemann, M. T., Lowe, S. W., McCombie, W. R., Martienssen, R. A. (December 2003) Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research, 13 (12). pp. 2658-64. ISSN 1088-9051

Rabinowicz, P. D., Schutz, K., Dedhia, N., Yordan, C., Parnell, L. D., Stein, L., McCombie, W. R., Martienssen, R. A. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics, 23 (3). pp. 305-308. ISSN 10614036 (ISSN)

Rabinowicz, Pablo D. (2003) Constructing gene-enriched plant genomic libraries using methylation filtration technology. In: Plant functional genomics: methods and protocols. Methods in Molecular Biology, 236 . Humana Press, pp. 21-36.

Ramsey, John S., Ammar, El-Desouky, Mahoney, Jaclyn E., Rivera, Keith, Johnson, Richard, Igwe, David O., Thannhauser, Theodore W., MacCoss, Michael J., Hall, David G., Heck, Michelle (January 2022) Host Plant Adaptation Drives Changes in Diaphorina citri Proteome Regulation, Proteoform Expression, and Transmission of ‘Candidatus Liberibacter asiaticus’, the Citrus Greening Pathogen. Phytopathology, 112 (1). pp. 101-115. ISSN 0031-949X

Ranallo-Benavidez, T Rhyker, Lemmon, Zachary, Soyk, Sebastian, Aganezov, Sergey, Salerno, William J, McCoy, Rajiv C, Lippman, Zachary B, Schatz, Michael C, Sedlazeck, Fritz J (May 2021) Optimized sample selection for cost-efficient long-read population sequencing. Genome Research, 31 (5). pp. 910-918. ISSN 1088-9051

Ravindran, Sandeep (June 2020) QnAs with Zachary B. Lippman. Proceedings of the National Academy of Sciences of USA.

Regulski, M., Lu, Z., Kendall, J., Donoghue, M. T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., McCombie, W. R., Tingey, S., Rafalski, A., Hicks, J., Ware, D., Martienssen, R. (June 2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research, 23 (10). pp. 1651-1662. ISSN 10889051 (ISSN)

Roberts, D., Pedmale, U. V., Morrow, J., Sachdev, S., Lechner, E., Tang, X., Zheng, N., Hannink, M., Genschik, P., Liscum, E. (October 2011) Modulation of phototropic responsiveness in Arabidopsis through ubiquitination of phototropin 1 by the CUL3-Ring E3 ubiquitin ligase CRL3(NPH3). Plant Cell, 23 (10). pp. 3627-40. ISSN 1040-4651

Robil, Janlo M, Tran, Thu M (October 2024) Bigger meristem, higher yield? The roles of REL2 and RELK in maize meristem function and yield enhancement. Plant Physiology. kiae552. ISSN 0032-0889

Robinson, S., Tang, L., Mooney, B., McKay, S. J., Clarke, W., Links, M., Karcz, S., Regan, S., Wu, Y.-Y., Gruber, M., Cui, D., Yu, M., Parkin, I. (July 2009) An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches. BMC Plant Biology, 9 (1). p. 101. ISSN 1471-2229

Rodriguez-Leal, D., Xu, C., Kwon, C. T., Soyars, C., Demesa-Arevalo, E., Man, J., Liu, L., Lemmon, Z. H., Jones, D. S., Van Eck, J., Jackson, D. P., Bartlett, M. E., Nimchuk, Z. L., Lippman, Z. B. (April 2019) Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nat Genet, 51 (5). pp. 786-792. ISSN 1061-4036

Rodríguez-Leal, Daniel, Lemmon, Zachary H., Man, Jarrett, Bartlett, Madelaine E., Lippman, Zachary B. (October 2017) Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing. Cell, 171 (2). pp. 470-80. ISSN 0092-8674

Rosado, Daniele, Ackermann, Amanda, Spassibojko, Olya, Rossi, Magdalena, Pedmale, Ullas (2021) Shade-induced WRKY transcription factors restrict root growth during the shade avoidance response. bioRxiv. (Submitted)

Rubinelli, P., Hu, Y., Ma, H. (July 1998) Identification, sequence analysis and expression studies of novel anther-specific genes of Arabidopsis thaliana. Plant Molecular Biology, 37 (4). pp. 607-19. ISSN 0167-4412 (Print)

S

Salzberg, S. L., Sommer, D. D., Schatz, M. C., Phillippy, A. M., Rabinowicz, P. D., Tsuge, S., Furutani, A., Ochiai, H., Delcher, A. L., Kelley, D., Madupu, R., Puiu, D., Radune, D., Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P. B., Ishihara, H., Meyer, D. F., Szurek, B., Verdier, V., Koebnik, R., Maxwell, J. M., Ryan, R. P., Hirata, H., Tsuyumu, S., Won Lee, S., Ronald, P. C., Sonti, R. V., Van Sluys, M. A., Leach, J. E., White, F. F., Bogdanove, A. J. (2008) Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics, 9. ISSN 1471-2164

Satina, Sophia Alexandrovna, Bergner, Anna Dorothy, Blakeslee, Albert Francis (May 1941) Morphological differentiation in chromosomes of Datura stramonium. American Journal of Botany, 28 (5). pp. 383-390.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (March 1926) Biochemical differences between sexes in green plants. Proceedings of the National Academy of Sciences, 12 (3). pp. 197-202.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (November 1937) Chromosome behavior in triploid Datura. II: The female gametophyte. American Journal of Botany, 24 (9). pp. 621-627.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (October 1937) Chromosome behavior in triploids of Datura stramonium. I: The male gametophyte. American Journal of Botany, 24 (8). pp. 518-527.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (1941) Contribution of the three germ layers to the formation of ovules in D. stramonium (Abstract). American Journal of Botany, 28 (10). 5s.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (March 1927) Further studies on biochemical differences between sexes in plants. Proceedings of the National Academy of Sciences, 13 (3). pp. 115-122.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (December 1940) Initiation and development of leaf and floral organs determined by periclinal chimeras in Datura stramonium (Abstract). American Journal of Botany, 27 (10, su). 8s.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (1937) Microsporogenesis and division in the pollen grain of triploid Daturas (Abstract). Genetics, 22. p. 207.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (January 1940) Morphological differentiation in chromosomes of Datura stramonium (Abstract). Genetics, 25 (1). pp. 133-134.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (December 1941) Periclinal chimeras in Datura stramonium in relation to development of leaf and flower. American Journal of Botany, 28 (10). pp. 862-871.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis (December 1939) The use of periclinal chimeras in tracing the germ layer origin of tissues in Datura (Abstract). American Journal of Botany, 26 (10). p. 4.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis, Avery, Amos G. (June 1937) Balanced and unbalanced haploids in Datura. The Journal of Heredity, 28 (6). pp. 193-202.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis, Avery, Amos G. (1938) Chromosome behavior in triploid Datura stramonium. III: The seed (Abstract). Genetics, 23 (1). p. 165.

Satina, Sophia Alexandrovna, Blakeslee, Albert Francis, Avery, Amos G. (1938) Chromosome behavior in triploid Datura. III: The seed. American Journal of Botany, 25 (8). pp. 595-602.

Satterlee, James W, Alonso, David, Gramazio, Pietro, Jenike, Katharine M, He, Jia, Arrones, Andrea, Villanueva, Gloria, Plazas, Mariola, Ramakrishnan, Srividya, Benoit, Matthias, Gentile, Iacopo, Hendelman, Anat, Shohat, Hagai, Fitzgerald, Blaine, Robitaille, Gina M, Green, Yumi, Swartwood, Kerry, Passalacqua, Michael J, Gagnon, Edeline, Hilgenhof, Rebecca, Huggins, Trevis D, Eizenga, Georgia C, Gur, Amit, Rutten, Twan, Stein, Nils, Yao, Shengrui, Bellot, Clement, Bendahmane, Mohammed, Frary, Amy, Knapp, Sandra, Särkinen, Tiina, Gillis, Jesse, Van Eck, Joyce, Schatz, Michael C, Eshed, Yuval, Prohens, Jaime, Vilanova, Santiago, Lippman, Zachary B (February 2024) Convergent evolution of plant prickles is driven by repeated gene co-option over deep time. bioRxiv. (Submitted)

Scanlon, M. J., Ohtsu, K., Timmermans, M. C. P., Schnable, P. S. (July 2009) Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Current Protocols in Molecular Biology (SUPPL.). 25A.3.1-25A.3.15.

Scanlon, M. J., Timmermans, M. (February 2013) Growth and development: from genes to networks and a mechanistic understanding of plant development. Current Opinion in Plant Biology, 16 (1). pp. 1-4. ISSN 1369-5266

Schatz, M. C. (November 2012) Talk from Mike Schatz at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Schatz, M. C., Witkowski, J., McCombie, W. R. (April 2012) Current challenges in de novo plant genome sequencing and assembly. Genome Biology, 13 (4). p. 243. ISSN 1474-7596

Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M., Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W. (November 2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326 (5956). pp. 1112-5. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Scholl, R., Sachs, M. M., Ware, D. (2003) Maintaining collections of mutants for plant functional genomics. Methods in Molecular Biology, 236. pp. 311-26. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Schumaker, Brooklyn, Mortensen, Lauren, Klein, Robert R, Mandal, Sabyasachi, Dykes, Linda, Gladman, Nicholas, Rooney, William L, Burson, Byron, Klein, Patricia E (October 2024) UV-induced reactive oxygen species and transcriptional control of 3-deoxyanthocyanidin biosynthesis in black sorghum pericarp. Frontiers in Plant Science, 15. p. 1451215. ISSN 1664-462X (Public Dataset)

Schwab, R., Maizel, A., Ruiz-Ferrer, V., Garcia, D., Bayer, M., Crespi, M., Voinnet, O., Martienssen, R. A. (June 2009) Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PloS one, 4 (6). e5980. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Scolnik, P. A., Hinton, P., Greenblatt, I. M., Giuliano, G., Delanoy, M. R., Spector, D. L., Pollock, D. (May 1987) Somatic instability of carotenoid biosynthesis in the tomato ghost mutant and its effect on plastid development. Planta, 171 (1). pp. 11-8. ISSN 0032-0935 (Print)0032-0935

Seaver, S. M., Gerdes, S., Frelin, O., Lerma-Ortiz, C., Bradbury, L. M., Zallot, R., Hasnain, G., Niehaus, T. D., El Yacoubi, B., Pasternak, S., Olson, R., Pusch, G., Overbeek, R., Stevens, R., de Crecy-Lagard, V., Ware, D., Hanson, A. D., Henry, C. S. (June 2014) High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource. Proceedings of the National Academy of Sciences of the United States of America, 111 (26). pp. 9645-9650. ISSN 0027-8424

Sela, H., Spiridon, L. N., Petrescu, A. J., Akerman, M., Mandel-Gutfreund, Y., Nevo, E., Loutre, C., Keller, B., Schulman, A. H., Fahima, T. (April 2012) Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domain. Molecular Plant Pathology, 13 (3). pp. 276-287. ISSN 14646722 (ISSN)

Senn, Savanah, Bhattacharyya, Sharmodeep, Presley, Gerald, Taylor, Anne E, Nash, Bruce, Enke, Ray A, Barnard-Kubow, Karen B, Ford, Jillian, Jasinski, Brandon, Badalova, Yekaterina (June 2022) The Functional Biogeography of eDNA Metacommunities in the Post-Fire Landscape of the Angeles National Forest. Microorganisms, 10 (6). p. 1218. ISSN 2076-2607

Seo, Myeong-Gyun, Lim, Yoonseo, Hendelman, Anat, Robitaille, Gina, Beak, Hong Kwan, Hong, Woo-Jong, Park, Soon Ju, Lippman, Zachary B, Park, Young-Joon, Kwon, Choon-Tak (June 2024) Evolutionary conservation of receptor compensation for stem cell homeostasis in Solanaceae plants. Horticulture Research, 11 (6). uhae126. ISSN 2662-6810 (Public Dataset)

Settles, A. M., Baron, A., Barkan, A., Martienssen, R. A. (January 2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics, 157 (1). pp. 349-360. ISSN 0016-6731

Settles, A. M., Martienssen, R. (December 1998) Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology, 8 (12). pp. 494-501. ISSN 0962-8924

Settles, A. M., Yonetani, A., Baron, A., Bush, D. R., Cline, K., Martienssen, R. (November 1997) Sec-independent protein translocation by the maize Hcf106 protein. Science, 278 (5342). pp. 1467-1470. ISSN 0036-8075

Shen, Xiaomeng, Liu, Lei, Tran, Thu, Ning, Qiang, Li, Manfei, Huang, Liangliang, Zhao, Ran, Li, Yunfu, Qing, Xiangyu, Jackson, David, Bai, Yan, Song, Weibin, Lai, Jinsheng, Zhang, Zuxin, Zhao, Haiming (September 2024) KRN5b regulates maize kernel row number through mediating phosphoinositol signalling. Plant Biotechnology Journal. ISSN 1467-7652 (Public Dataset)

Shewry, P. R., Tatham, A. S., Pappin, D. J., Keen, J. (November 1988) N-terminal amino-acid sequences show that D-hordein of barley and high molecular-weight (HMW) secalins of rye are homologous with HMW glutenin subunits of wheat. Cereal Chemistry, 65 (6). pp. 510-511. ISSN 0009-0352

Shi, Hai, Ernst, Evan, Heinzel, Nicolas, McCorkle, Sean, Rolletschek, Hardy, Borisjuk, Ljudmilla, Ortleb, Stefan, Martienssen, Robert, Shanklin, John, Schwender, Jorg (October 2023) Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis. BMC Plant Biology, 23 (1). p. 458. ISSN 1471-2229 (Public Dataset)

Shi, Xiaoya, Cao, Shuo, Wang, Xu, Huang, Siyang, Wang, Yue, Liu, Zhongjie, Liu, Wenwen, Leng, Xiangpeng, Peng, Yanling, Wang, Nan, Wang, Yiwen, Ma, Zhiyao, Xu, Xiaodong, Zhang, Fan, Xue, Hui, Zhong, Haixia, Wang, Yi, Zhang, Kekun, Velt, Amandine, Avia, Komlan, Holtgräwe, Daniela, Grimplet, Jérôme, Matus, José Tomás, Ware, Doreen, Wu, Xinyu, Wang, Haibo, Liu, Chonghuai, Fang, Yuling, Rustenholz, Camille, Cheng, Zongming, Xiao, Hua, Zhou, Yongfeng (May 2023) The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding. Horticulture Research, 10 (5). uhad061. ISSN 2662-6810

Shukla, S. D., Bhatnagar, M., Khurana, S. (July 2012) Critical evaluation of ayurvedic plants for stimulating intrinsic antioxidant response. Frontiers in Neuroscience, 6 (July). pp. 1-12. ISSN 16624548

Shull, George Harrison (1911) Defective inheritance-ratios in Bursa hybrids. Verhandlungen des Naturforschenden Vereines in Brünn, 49.

Shull, George Harrison (1914) Duplicate genes for capsule-form in Bursa bursa-pastoris. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 12 (2). pp. 97-149.

Shull, George Harrison (October 1912) Hermaphrodite females in Lychnis dioica. Science, 36 (928). pp. 482-483.

Shull, George Harrison (1912) Inheritance of the heptandra-form of Digitalis purpurea L. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 6 (5). 257-267, with plates.

Shull, George Harrison (1912) Inheritance of the heptandria form of Digitalis purpurea L. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 6 (5). p. 257.

Shull, George Harrison (1911) Referate. : Factors for Mottling in Beans; Inheritance of color in the seeds of the common bean. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 4 (5). pp. 372-374.

Shull, George Harrison (November 1911) Reversible sex-mutants in Lychnis dioica. Botanical Gazette, 52 (5). pp. 329-368.

Shull, George Harrison (1914) Sex-limited inheritance in Lychnis dioica L. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 12 (5). 265-302, with plates.

Shull, George Harrison (1914) Uber die Vererbung der Blattfarbe bei Melandrium. Berichte der Deutschen Botanischen Gesellschaft, 31. pp. 40-80.

Shull, George Harrison (January 1913) Über die Vererbung der Blattfarbe bei Melandrium. Berichten der Deutschen Botanischen Gesellschaft, 31. pp. 40-80.

Shull, George Harrison (1908) The composition of a field of maize. Journal of Heredity, 4. pp. 296-301.

Shull, George Harrison (August 1912) The primary color-factors of Lychnis and color-inhibitors of Papaver rhoeas. Botanical Gazette, 54 (2). pp. 120-135.

Singh, N. K., Raghuvanshi, S., Srivastava, S. K., Gaur, A., Pal, A. K., Dalal, V., Singh, A., Ghazi, I. A., Bhargav, A., Yadav, M., Dixit, A., Batra, K., Gaikwad, K., Sharma, T. R., Mohanty, A., Bharti, A. K., Kapur, A., Gupta, V., Kumar, D., Vij, S., Vydianathan, R., Khurana, P., Sharma, S., McCombie, W. R., Messing, J., Wing, R., Sasaki, T., Mohapatra, T., Khurana, J. P., Tyagi, A. K. (2004) Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny. Functional and Integrative Genomics, 4 (2). pp. 102-117. ISSN 1438793X (ISSN)

Singh, R., Low, E. T., Ooi, L. C., Ong-Abdullah, M., Nookiah, R., Ting, N. C., Marjuni, M., Chan, P. L., Ithnin, M., Manaf, M. A., Nagappan, J., Chan, K. L., Rosli, R., Halim, M. A., Azizi, N., Budiman, M. A., Lakey, N., Bacher, B., Van Brunt, A., Wang, C., Hogan, M., He, D., MacDonald, J. D., Smith, S. W., Ordway, J. M., Martienssen, R. A., Sambanthamurthi, R. (June 2014) The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications, 5. p. 4106. ISSN 20411723

Singh, R., Low, E. T. L., Ooi, L. C. L., Ong-Abdullah, M., Ting, N. C., Nagappan, J., Nookiah, R., Amiruddin, M. D., Rosli, R., Manaf, M. A. A., Chan, K. L., Halim, M. A., Azizi, N., Lakey, N., Smith, S. W., Budiman, M. A., Hogan, M., Bacher, B., Van Brunt, A., Wang, C., Ordway, J. M., Sambanthamurthi, R., Martienssen, R. A. (August 2013) The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature, 500 (7462). pp. 340-344. ISSN 00280836