Items where Subject is "maize"

A

Athma, P., Grotewold, E., Peterson, T. (May 1992) Insertional mutagenesis of the maize P gene by intragenic transposition of Ac. Genetics, 131 (1). pp. 199-209. ISSN 0016-6731 (Print)0016-6731 (Linking)

Aubert, Juliette, Bellegarde, Fanny, Oltehua-Lopez, Omar, Leblanc, Olivier, Arteaga-Vazquez, Mario A, Martienssen, Robert A, Grimanelli, Daniel (August 2022) AGO104 is a RdDM effector of paramutation at the maize b1 locus. PLoS One, 17 (8). e0273695-e0273695. ISSN 1932-6203 (Public Dataset)

B

Baker, R. F., Leach, K. A., Boyer, N. R., Swyers, M. J., Benitez-Alfonso, Y., Skopelitis, T., Luo, A., Sylvester, A., Jackson, D., Braun, D. M. (November 2016) Sucrose transporter ZmSut1 expression and localization uncover new insights into sucrose phloem loading. Plant Physiol, 172 (3). pp. 1876-1898. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Barkan, A., Martienssen, R. A. (April 1991) Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. Proceedings of the National Academy of Sciences of the United States of America, 88 (8). pp. 3502-3506. ISSN 0027-8424

Bartlett, M. E., Williams, S. K., Taylor, Z., DeBlasio, S., Goldshmidt, A., Hall, D. H., Schmidt, R. J., Jackson, D. P., Whipple, C. J. (November 2015) The Maize PI/GLO Ortholog Zmm16/sterile tassel silky ear1 Interacts with the Zygomorphy and Sex Determination Pathways in Flower Development. Plant Cell, 27 (11). pp. 3081-3098. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Beadle, George Wells, McClintock, Barbara (November 1928) A genic disturbance of meiosis in Zea mays. Science, 68 (1766). p. 433.

Benoit, Matthias (January 2022) Hot 'n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize. The Plant cell, 34 (1). pp. 497-498. ISSN 1532-298X

Berube, Benjamin (August 2021) Epigenetic Control of Meiotic Recombination and Drive. PhD thesis, Cold Spring Harbor Laboratory.

Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry, Martienssen, Robert A (August 2023) Teosinte Pollen Drive guides maize domestication and evolution by RNAi. bioRxiv. (Public Dataset) (Submitted)

Boddu, J., Jiang, C., Sangar, V., Olson, T., Peterson, T., Chopra, S. (January 2006) Comparative structural and functional characterization of sorghum and maize duplications containing orthologous Myb transcription regulators of 3-deoxyflavonoid biosynthesis. Plant Molecular Biology, 60 (2). pp. 185-199. ISSN 01674412

Bommert, P., Lunde, C., Nardmann, J., Vollbrecht, E., Running, M., Jackson, D. P., Hake, S., Werr, W. (March 2005) Thick tassel dwarf1 encodes a putative maize ortholog of the Arabidopsis CLAVATA1 leucine-rich repeat receptor-like kinase. Development, 132 (6). pp. 1235-1245. ISSN 0950-1991

Bommert, P., Nagasawa, N. S., Jackson, D. (March 2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036

Bortiri, E., Chuck, G., Vollbrecht, E., Rocheford, T. R., Martienssen, R. A., Hake, S. (March 2006) ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell, 18 (3). pp. 574-585. ISSN 10404651

Bortiri, E., Jackson, D. P., Hake, S. (April 2006) Advances in maize genomics: The emergence of positional cloning. Current Opinion in Plant Biology, 9 (2). pp. 164-171. ISSN 13695266

Brooks, L., Strable, J., Zhang, X., Ohtsu, K., Zhou, R., Sarkar, A., Hargreaves, S., Elshire, R. J., Eudy, D., Pawlowska, T., Ware, D. H., Janick-Buckner, D., Buckner, B., Timmermans, M. C. P., Schnable, P. S., Nettleton, D., Scanlon, M. J. (May 2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5 (5). e1000476.

Brown, J., Sundaresan, V. (February 1991) A recombination hotspot in the maize A1 intragenic region. Theor Appl Genet, 81 (2). pp. 185-8. ISSN 0040-5752 (Print)0040-5752 (Linking)

Brutnell, T. P., Wang, L., Swartwood, K., Goldschmidt, A., Jackson, D. P. , Zhu, X. G., Kellogg, E., van Eck, J. (August 2010) Setaria viridis: A model for C4 photosynthesis. Plant Cell, 22 (8). pp. 2537-2544.

Buckler, E. S., Holland, J. B., Bradbury, P. J., Acharya, C. B., Brown, P. J., Browne, C., Ersoz, E., Flint-Garcia, S., Garcia, A., Glaubitz, J. C., Goodman, M. M., Harjes, C., Guill, K., Kroon, D. E., Larsson, S., Lepak, N. K., Li, H., Mitchell, S. E., Pressoir, G., Peiffer, J. A., Rosas, M. O., Rocheford, T. R., Romay, M. C., Romero, S., Salvo, S., Sanchez Villeda, H., da Silva, H. S., Sun, Q., Tian, F., Upadyayula, N., Ware, D. H., Yates, H., Yu, J., Zhang, Z., Kresovich, S., McMullen, M. D. (August 2009) The genetic architecture of maize flowering time. Science, 325 (5941). pp. 714-8. ISSN 1095-9203 (Electronic)

Bukowski, R., Guo, X., Lu, Y., Zou, C., He, B., Rong, Z., Wang, B., Xu, D., Yang, B., Xie, C., Fan, L., Gao, S., Xu, X., Zhang, G., Li, Y., Jiao, Y., Doebley, J. F., Ross-Ibarra, J., Lorant, A., Buffalo, V., Romay, M. C., Buckler, E. S., Ware, D., Lai, J., Sun, Q., Xu, Y. (April 2018) Construction of the third generation Zea mays haplotype map. Gigascience, 7 (4). pp. 1-12. ISSN 2047-217x

Bukowski, R., Guo, X., Lu, Y., Zou, C., He, B., Rong, Z., Wang, B., Xu, D., Yang, B., Xie, C., Fan, L., Gao, S., Xu, X., Zhang, G., Li, Y., Jiao, Y., Doebley, J. F., Ross-Ibarra, J., Lorant, A., Buffalo, V., Romay, M. C., Buckler, E. S., Ware, D., Lai, J., Sun, Q., Xu, Y. (April 2018) Construction of the third-generation Zea mays haplotype map. Gigascience, 7 (4). pp. 1-12. ISSN 2047-217x

C

Chen, Wenkang, Chen, Lu, Zhang, Xuan, Yang, Ning, Guo, Jianghua, Wang, Min, Ji, Shenghui, Zhao, Xiangyu, Yin, Pengfei, Cai, Lichun, Xu, Jing, Zhang, Lili, Han, Yingjia, Xiao, Yingni, Xu, Gen, Wang, Yuebin, Wang, Shuhui, Wu, Sheng, Yang, Fang, Jackson, David, Cheng, Jinkui, Chen, Saihua, Sun, Chuanqing, Qin, Feng, Tian, Feng, Fernie, Alisdair R, Li, Jiansheng, Yan, Jianbing, Yang, Xiaohong (March 2022) Convergent selection of a WD40 protein that enhances grain yield in maize and rice. Science, 375 (6587). eabg7985. ISSN 0036-8075

Chia, J. M., Song, C., Bradbury, P. J., Costich, D., de Leon, N., Doebley, J., Elshire, R. J., Gaut, B., Geller, L., Glaubitz, J. C., Gore, M., Guill, K. E., Holland, J., Hufford, M. B., Lai, J., Li, M., Liu, X., Lu, Y., McCombie, R., Nelson, R., Poland, J., Prasanna, B. M., Pyhajarvi, T., Rong, T., Sekhon, R. S., Sun, Q., Tenaillon, M. I., Tian, F., Wang, J., Xu, X., Zhang, Z., Kaeppler, S. M., Ross-Ibarra, J., McMullen, M. D., Buckler, E. S., Zhang, G., Xu, Y., Ware, D. (June 2012) Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet, 44 (7). 803-U238. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Chitwood, D. H. (2009) Patterning in Leaves via a Cascade of Small RNAs. PhD thesis, Cold Spring Harbor Laboratory.

Christensen, S. A., Nemchenko, A., Borrego, E., Murray, I., Sobhy, I. S., Bosak, L., Deblasio, S., Erb, M., Robert, C. A., Vaughn, K. A., Herrfurth, C., Tumlinson, J., Feussner, I., Jackson, D., Turlings, T. C., Engelberth, J., Nansen, C., Meeley, R., Kolomiets, M. V. (April 2013) The maize lipoxygenase, ZmLOX10, mediates green leaf volatile, jasmonate and herbivore-induced plant volatile production for defense against insect attack. Plant Journal, 74 (1). pp. 59-73. ISSN 09607412 (ISSN)

Chuck, G., Whipple, C., Jackson, D. P., Hake, S. (2010) The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries. Development (Cambridge, England), 137 (8). pp. 1243-1250. ISSN 14779129 (ISSN)

Claeys, H., Vi, S. L., Xu, X., Satoh-Nagasawa, N., Eveland, A. L., Goldshmidt, A., Feil, R., Beggs, G. A., Sakai, H., Brennan, R. G., Lunn, J. E., Jackson, D. (April 2019) Control of meristem determinacy by trehalose 6-phosphate phosphatases is uncoupled from enzymatic activity. Nat Plants, 5 (4). pp. 352-357. ISSN 2055-0278

Colasanti, J., Cho, S. O., Wick, S., Sundaresan, V. (September 1993) Localization of the Functional p34cdc2 Homolog of Maize in Root Tip and Stomatal Complex Cells: Association with Predicted Division Sites. Plant Cell, 5 (9). pp. 1101-1111. ISSN 1040-4651 (Print)

Creighton, Harriet Baldwin, McClintock, Barbara (1931) A correlation of cytological and genetical crossing-over in Zea mays. Proceedings of the National Academy of Sciences, 17 (8). pp. 492-497.

D

Das, L., Martienssen, R. (March 1995) Site-selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell, 7 (3). pp. 287-294. ISSN 1040-4651

DeBlasio, S. L., Sylvester, A. W., Jackson, D. P. (March 2010) Illuminating plant biology: using fluorescent proteins for high-throughput analysis of protein localization and function in plants. Briefings in Functional Genomics, 9 (2). pp. 129-138. ISSN 2041-2649

Dellaporta, S. L., Chomet, P. S., Mottinger, J. P., Wood, J. A., Yu, S. M., Hicks, J. B. (1984) Endogenous transposable elements associated with virus infection in maize. Cold Spring Harbor Symposia on Quantitative Biology, 49. pp. 321-328. ISSN 00917451 (ISSN)

Demerec, Milislav (1929) Cross sterility in maize. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 50 (3). pp. 281-291.

Demerec, Milislav (December 1924) Genetic relations of five factor pairs for virescent seedlings in maize. Project Report. Carnegie Institution of Washington, Ithaca, New York.

Demerec, Milislav (1924) Genetics of four groups of seedling characters which affect the development of chlorophyll in maize. The Anatomical Record, 29. p. 133.

Demerec, Milislav (November 1921) Heritable characters of maize. X: Zebra striped leaves. Journal of Heredity, The, 12 (9). pp. 406-407.

Demerec, Milislav (October 1923) Heritable characters of maize. XV: Germless seeds. The Journal of Heredity, 14 (7). pp. 297-300.

Demerec, Milislav (September 1927) Heritable characters of maize. XXIX: Midcob color. The Journal of Heredity, 18 (9). pp. 420-422.

Demerec, Milislav (August 1926) Heritable characters of maize. XXV: Piebald seedlings. The Journal of Heredity, 17 (8). pp. 300-306.

Demerec, Milislav (July 1925) Inheritance of pale green seedlings in maize. Genetics, 10 (4). pp. 318-344.

Demerec, Milislav (1923) Inheritance of white seedings in maize. Genetics, 8 (6). pp. 561-593.

Demerec, Milislav (March 1926) Notes on linkages in maize. The American Naturalist, 60 (667). pp. 172-176.

Demerec, Milislav (July 1924) A case of pollen dimorphism in maize. American Journal of Botany, 11 (7). pp. 461-464.

Demerec, Milislav (October 1927) A second case of maternal inheritances of chlorophyll in maize. Botanical Gazette, 84 (2). pp. 139-155.

Demerec, Milislav, Emerson, R. A. (1924) Inheritance of white seedlings in maize. The Anatomical Record, 29. p. 134.

Depge-Fargeix, N., Javelle, M., Chambrier, P., Frangne, N., Gerentes, D., Perez, P., Rogowsky, P. M., Vernoud, V. (2011) Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize. Journal of Experimental Botany, 62 (1). pp. 293-305.

Ding, D., Zhang, L., Wang, H., Liu, Z., Zhang, Z., Zheng, Y. (January 2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot, 103 (1). pp. 29-38.

Doehlemann, G., van der Linde, K., Amann, D., Schwammbach, D., Hof, A., Mohanty, A., Jackson, D. P., Kahmann, R. (February 2009) Pep1, a Secreted Effector Protein of Ustilago maydis, Is Required for Successful Invasion of Plant Cells. Plos Pathogens, 5 (2). e1000290. ISSN 1553-7366

Doseff, A., Martienssen, R., Sundaresan, V. (February 1991) Somatic excision of the Mu1 transposable element of maize. Nucleic Acids Research, 19 (3). pp. 579-584. ISSN 0305-1048

Dotto, M. C., Petsch, K. A., Aukerman, M. J., Beatty, M., Hammell, M., Timmermans, M. C. (December 2014) Genome-Wide Analysis of leafbladeless1-Regulated and Phased Small RNAs Underscores the Importance of the TAS3 ta-siRNA Pathway to Maize Development. PLoS Genetics, 10 (12). e1004826. ISSN 1553-7390

Douglas, R. N., Wiley, D., Sarkar, A., Springer, N., Timmermans, M. C. P., Scanlon, M. J. (May 2010) Ragged seedling2 Encodes an ARGONAUTE7-Like Protein Required for Mediolateral Expansion, but Not Dorsiventrality, of Maize Leaves. Plant Cell, 22 (5). pp. 1441-1451. ISSN 1040-4651

Downs, G. S., Liseron-Monfils, C., Lukens, L. N. (March 2014) Regulatory motifs identified from a maize developmental coexpression network. Genome, 57 (3). pp. 181-184. ISSN 0831-2796

Du, Yanfang, Lunde, China, Li, Yunfu, Jackson, David, Hake, Sarah, Zhang, Zuxin (February 2021) Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize. Proceedings of the National Academy of Sciences of USA, 118 (7). e2019218118-e2019218118. ISSN 0027-8424

Duvick, J. P., Rood, T., Rao, A. G., Marshak, D. R. (September 1992) Purification and characterization of a novel antimicrobial peptide from maize (Zea mays L.) kernels. J Biol Chem, 267 (26). pp. 18814-20. ISSN 0021-9258 (Print)0021-9258 (Linking)

E

Eveland, A. L., Goldshmidt, A., Pautler, M., Morohashi, K., Liseron-Monfils, C., Lewis, M. W., Kumari, S., Hiraga, S., Yang, F., Unger-Wallace, E., Olson, A., Hake, S., Vollbrecht, E., Grotewold, E., Ware, D., Jackson, D. (2014) Regulatory modules controlling maize inflorescence architecture. Genome Research, 24 (3). pp. 431-443. ISSN 1088-9051

Eveland, A. L., Satoh-Nagasawa, N., Goldschmidt, A., Meyer, S., Beatty, M., Sakai, H., Ware, D. H., Jackson, D. P. (September 2010) Digital Gene Expression Signatures for Maize Development. Plant Physiology, 154 (3). pp. 1024-1039. ISSN 0032-0889

F

Falcone Ferreyra, M. L., Casas, M. I., Questa, J. I., Herrera, A. L., Deblasio, S., Wang, J., Jackson, D., Grotewold, E., Casati, P. (2012) Evolution and expression of tandem duplicated maize flavonol synthase genes. Frontiers in Plant Science, 3. p. 101. ISSN 1664-462x

Foster, Toshi M, Timmermans, Marja C. P. (2009) Axial Patterning of the Maize Leaf. In: Handbook of Maize: Its Biology. Springer New York, pp. 161-178. ISBN 978-0-387-79417-4

G

Gallavotti, A., Long, J. A., Stanfield, S., Yang, X. A., Jackson, D. P., Vollbrecht, E., Schmidt, R. J. (September 2010) The control of axillary meristem fate in the maize ramosa pathway. Development, 137 (17). pp. 2849-2856. ISSN 0950-1991

Gallavotti, A., Yang, Y., Schmidt, R. J., Jackson, D. P. (2008) The relationship between auxin transport and maize branching. Plant Physiology, 147 (4). pp. 1913-1923. ISSN 0032-0889

Gladman, Nicholas, Kumari, Sunita, Fahey, Audrey, Regulski, Michael, Ware, Doreen (September 2024) GRAS Family Transcription Factor Binding Behaviors in Sorghum bicolor, Oyrza, and Maize. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Gore, M. A., Chia, J. M., Elshire, R. J., Sun, Q., Ersoz, E. S., Hurwitz, B. L., Peiffer, J. A., McMullen, M. D., Grills, G. S., Ross-Ibarra, J., Ware, D. H., Buckler, E. S. (November 2009) A first-generation haplotype map of maize. Science, 326 (5956). pp. 1115-1117. ISSN 0036-8075

Gray, J., Bevan, M., Brutnell, T., Buell, C. R., Cone, K., Hake, S., Jackson, D. P., Kellogg, E., Lawrence, C., McCouch, S., Mockler, T., Moose, S., Paterson, A., Peterson, T., Rokshar, D., Souza, G. M., Springer, N., Stein, N., Timmermans, M. C. P., Wang, G.-L., Grotewold, E. (January 2009) A Recommendation for Naming Transcription Factor Proteins in the Grasses. Plant Physiol., 149 (1). pp. 4-6.

Grossniklaus, Ueli (December 2017) Polyspermy produces tri-parental seeds in maize. Current Biology, 27 (24). R1300-R1302. ISSN 0960-9822

Grotewold, E., Athma, P., Peterson, T. (November 1991) A possible hot spot for Ac insertion in the maize P gene. Mol Gen Genet, 230 (1-2). pp. 329-31. ISSN 0026-8925 (Print)0026-8925 (Linking)

Grotewold, E., Chamberlin, M., Snook, M., Siame, B., Butler, L., Swenson, J., Maddock, S., Clair, G. S., Bowen, B. (May 1998) Engineering secondary metabolism in maize cells by ectopic expression of transcription factors. Plant Cell, 10 (5). pp. 721-40. ISSN 1040-4651 (Print)

Grotewold, E., Drummond, B. J., Bowen, B., Peterson, T. (February 1994) The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset. Cell, 76 (3). pp. 543-53. ISSN 0092-8674 (Print)

Grotewold, E., Peterson, T. (January 1994) Isolation and characterization of a maize gene encoding chalcone flavonone isomerase. Mol Gen Genet, 242 (1). pp. 1-8. ISSN 0026-8925 (Print)

H

Hake, S., Char, B. R., Chuck, G., Foster, T., Long, J., Jackson, D. P. (1995) Homeobox genes in the functioning of plant meristems. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 350 (1331). pp. 45-51. ISSN 09628436 (ISSN)

Han, C. D., Coe, E. H., Martienssen, R. A. (1992) Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. EMBO J, 11 (11). pp. 4037-4046. ISSN 0261-4189

Han, C. D., Derby, R. J., Schnable, P. S., Martienssen, R. A. (1995) Characterization of the plastids affected by class-ii albino mutations of maize at the morphological and transcript levels. Maydica, 40 (1). pp. 13-22. ISSN 0025-6153

Hon, T., Mars, K., Young, G., Tsai, Y. C., Karalius, J. W., Landolin, J. M., Maurer, N., Kudrna, D., Hardigan, M. A., Steiner, C. C., Knapp, S. J., Ware, D., Shapiro, B., Peluso, P., Rank, D. R. (November 2020) Highly accurate long-read HiFi sequencing data for five complex genomes. Sci Data, 7 (1). p. 399. ISSN 2052-4463

Hu, Ying, Colantonio, Vincent, Müller, Bárbara SF, Leach, Kristen A, Nanni, Adalena, Finegan, Christina, Wang, Bo, Baseggio, Matheus, Newton, Carter J, Juhl, Emily M, Hislop, Lillian, Gonzalez, Juan M, Rios, Esteban F, Hannah, L Curtis, Swarts, Kelly, Gore, Michael A, Hennen-Bierwagen, Tracie A, Myers, Alan M, Settles, A Mark, Tracy, William F, Resende, Marcio FR (February 2021) Genome assembly and population genomic analysis provide insights into the evolution of modern sweet corn. Nature Communications, 12 (1). p. 1227. ISSN 2041-1723

Huang, J., Lu, G., Liu, L., Raihan, M. S., Xu, J., Jian, L., Zhao, L., Tran, T. M., Zhang, Q., Liu, J., Li, W., Wei, C., Braun, D. M., Li, Q., Fernie, A. R., Jackson, D., Yan, J. (August 2020) The Kernel Size-Related Quantitative Trait Locus qKW9 Encodes a Pentatricopeptide Repeat Protein That Aaffects Photosynthesis and Grain Filling. Plant Physiol, 183 (4). pp. 1696-1709. ISSN 0032-0889 (Print)0032-0889

Hufford, K. M., Canaran, P., Ware, D. H., McMullen, M. D., Gaut, B. S. (July 2007) Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiology, 144 (3). pp. 1642-1653. ISSN 0032-0889

Hufford, M. B., Xu, X., van Heerwaarden, J., Pyhajarvi, T., Chia, J. M., Cartwright, R. A., Elshire, R. J., Glaubitz, J. C., Guill, K. E., Kaeppler, S. M., Lai, J. S., Morrell, P. L., Shannon, L. M., Song, C., Springer, N. M., Swanson-Wagner, R. A., Tiffin, P., Wang, J., Zhang, G. Y., Doebley, J., McMullen, M. D., Ware, D., Buckler, E. S., Yang, S., Ross-Ibarra, J. (July 2012) Comparative population genomics of maize domestication and improvement. Nature Genetics, 44 (7). pp. 808-811. ISSN 1061-4036

Hufford, Matthew B, Seetharam, Arun S, Woodhouse, Margaret R, Chougule, Kapeel M, Ou, Shujun, Liu, Jianing, Ricci, William A, Guo, Tingting, Olson, Andrew, Qiu, Yinjie, Della Coletta, Rafael, Tittes, Silas, Hudson, Asher I, Marand, Alexandre P, Wei, Sharon, Lu, Zhenyuan, Wang, Bo, Tello-Ruiz, Marcela K, Piri, Rebecca D, Wang, Na, Kim, Dong Won, Zeng, Yibing, O'Connor, Christine H, Li, Xianran, Gilbert, Amanda M, Baggs, Erin, Krasileva, Ksenia V, Portwood, John L, Cannon, Ethalinda KS, Andorf, Carson M, Manchanda, Nancy, Snodgrass, Samantha J, Hufnagel, David E, Jiang, Qiuhan, Pedersen, Sarah, Syring, Michael L, Kudrna, David A, Llaca, Victor, Fengler, Kevin, Schmitz, Robert J, Ross-Ibarra, Jeffrey, Yu, Jianming, Gent, Jonathan I, Hirsch, Candice N, Ware, Doreen, Dawe, R Kelly (August 2021) De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science, 373 (6555). pp. 655-662. ISSN 0036-8075

Hung, H. Y., Shannon, L. M., Tian, F., Bradbury, P. J., Chen, C., Flint-Garcia, S. A., McMullen, M. D., Ware, D., Buckler, E. S., Doebley, J. F., Holland, J. B. (July 2012) ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proceedings of the National Academy of Sciences of the United States of America, 109 (28). E1913-E1921. ISSN 0027-8424

J

Jackson, D. (March 2017) No sex please, we're (in)breeding. EMBO Journal, 36 (6). pp. 703-704. ISSN 0261-4189

Jackson, D., Veit, B., Hake, S. (February 1994) Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot. Development, 120 (2). pp. 405-413.

Jackson, D. P., Hake, S. (1999) Control of phyllotaxy in maize by the abphyl1 gene. Development, 126 (2). pp. 315-323. ISSN 09501991 (ISSN)

Jackson, D, Tian, F, Zhang, Z (January 2022) Maize genetics, genomics, and sustainable improvement. Molecular Breeding: new strategies in plant improvement, 42 (1). ISSN 1380-3743

Javelle, M., Klein-Cosson, C., Vernoud, V., Boltz, V., Maher, C., Timmermans, M. C. P., Depege-Fargeix, N., Rogowsky, P. M. (October 2011) Genome-Wide Characterization of the HD-ZIP IV Transcription Factor Family in Maize: Preferential Expression in the Epidermis. Plant Physiology, 157 (2). pp. 790-803. ISSN 0032-0889

Javelle, M., Vernoud, V., Depège-Fargeix, N., Arnould, C., Oursel, D., Domergue, F., Sarda, X., Rogowsky, P. M. (2010) Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor OUTER CELL LAYER1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis. Plant Physiology, 154 (1). pp. 273-286.

Je, B. I., Gruel, J., Lee, Y. K., Bommert, P., Arevalo, E. D., Eveland, A. L., Wu, Q., Goldshmidt, A., Meeley, R., Bartlett, M., Komatsu, M., Sakai, H., Jonsson, H., Jackson, D. (July 2016) Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits. Nat Genet, 48 (7). pp. 785-791. ISSN 1546-1718 (Electronic)1061-4036 (Linking) (Public Dataset)

Je, B. I., Xu, F., Wu, Q., Liu, L., Meeley, R., Gallagher, J. P., Corcilius, L., Payne, R. J., Bartlett, M. E., Jackson, D. (March 2018) The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors. Elife, 7. ISSN 2050-084x

Jia, H., Li, M., Li, W., Liu, L., Jian, Y., Yang, Z., Shen, X., Ning, Q., Du, Y., Zhao, R., Jackson, D., Yang, X., Zhang, Z. (February 2020) A Serine/Threonine Protein Kinase Encoding Gene KERNEL NUMBER PER ROW6 Regulates Maize Grain Yield. Nature Communications, 11 (988). pp. 1-11. ISSN 2041-1723 (Public Dataset)

Jiang, F., Guo, M., Yang, F., Duncan, K., Jackson, D., Rafalski, A., Wang, S., Li, B. (May 2012) Mutations in an AP2 transcription factor-like gene affect internode length and leaf shape in maize. PLoS ONE, 7 (5). Article no.e37040.

Jiang, H., Zhang, J., Han, Z., Yang, J., Ge, C., Wu, Q. (March 2017) Revealing new insights into different phosphorus-starving responses between two maize (Zea mays) inbred lines by transcriptomic and proteomic studies. Scientific Reports, 7. p. 44294. ISSN 20452322

Jiang, Chenglin, Sun, Ju, Li, Rui, Yan, Shijuan, Chen, Wei, Guo, Liang, Qin, Guochen, Wang, Pengcheng, Luo, Cheng, Huang, Wenjie, Zhang, Qinghua, Fernie, Alisdair R, Jackson, David, Li, Xiang, Yan, Jianbing (April 2022) A reactive oxygen species burst causes haploid induction in maize. Molecular Plant. ISSN 1674-2052

Jiao, Y., Peluso, P., Shi, J., Liang, T., Stitzer, M. C., Wang, B., Campbell, M. S., Stein, J. C., Wei, X., Chin, C. S., Guill, K., Regulski, M., Kumari, S., Olson, A., Gent, J., Schneider, K. L., Wolfgruber, T. K., May, M. R., Springer, N. M., Antoniou, E., McCombie, W. R., Presting, G. G., McMullen, M., Ross-Ibarra, J., Dawe, R. K., Hastie, A., Rank, D. R., Ware, D. (June 2017) Improved maize reference genome with single-molecule technologies. Nature, 546 (7659). pp. 524-527. ISSN 0028-0836 (Public Dataset)

Juarez, M. T., Twigg, R. W., Timmermans, M. C. P. (September 2004) Specification of adaxial cell fate during maize leaf development. Development, 131 (18). pp. 4533-44. ISSN 0950-1991 (Print)

K

Kim, J. Y., Yuan, Z., Jackson, D. P. (September 2003) Developmental regulation and significance of KNOX protein trafficking in Arabidopsis. Development, 130 (18). pp. 4351-4362. ISSN 0950-1991

Kim, J. Y., Yuan, Z. A., Cilia, M., Khalfan-Jagani, Z., Jackson, D. P. (March 2002) Intercellular trafficking of a KNOTTED1 green fluorescent protein fusion in the leaf and shoot meristem of Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 99 (6). pp. 4103-4108. ISSN 0027-8424

Kim, Da Eun, Jeong, Jin-hee, Kang, Yu Mi, Park, Young-Hoon, Lee, Yong-Jae, Kang, Jum-soon, Choi, Young-Whan, Son, Beung-Gu, Kim, Sun Tae, Jackson, Dave, Je, Byoung Il (January 2022) The Impact of Fasciation on Maize Inflorescence Architecture. Journal of Plant Biology. ISSN 1226-9239

Kim, S. B., Karre, S., Wu, Q., Park, M., Meyers, E., Claeys, H., Wisser, R., Jackson, D., Balint-Kurti, P. (August 2020) Multiple insertions of COIN, a novel maize Foldback transposable element, in the Conring gene cause a spontaneous progressive cell death phenotype. Plant J. ISSN 0960-7412

Klein, Harry, Gallagher, Joseph, Demesa-Arevalo, Edgar, Abraham-Juárez, María Jazmín, Heeney, Michelle, Feil, Regina, Lunn, John E, Xiao, Yuguo, Chuck, George, Whipple, Clinton, Jackson, David, Bartlett, Madelaine (January 2022) Recruitment of an ancient branching program to suppress carpel development in maize flowers. Proceedings of the National Academy of Sciences of USA, 119 (2). e2115871119-e2115871119. ISSN 0027-8424

Knauer, S., Javelle, M., Li, L., Li, X., Ma, X., Wimalanathan, K., Kumari, S., Johnston, R., Leiboff, S., Meeley, R., Schnable, P. S., Ware, D., Lawrence-Dill, C., Yu, J., Muehlbauer, G. J., Scanlon, M. J., Timmermans, M. C. P. (November 2019) A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits. Genome Res, 29 (12). pp. 1962-1973. ISSN 1088-9051 (Public Dataset)

Krishnakumar, V., Choi, Y., Beck, E., Wu, Q., Luo, A., Sylvester, A., Jackson, D., Chan, A. P. (November 2015) A Maize Database Resource that Captures Tissue-Specific and Subcellular-Localized Gene Expression, via Fluorescent Tags and Confocal Imaging. (Maize Cell Genomics Database). Plant & cell physiology, 56 (1). e12. ISSN 0032-0781

L

Law, M., Childs, K. L., Campbell, M. S., Stein, J. C., Olson, A. J., Holt, C., Panchy, N., Lei, J., Jiao, D., Andorf, C. M., Lawrence, C. J., Ware, D., Shiu, S. H., Sun, Y., Jiang, N., Yandell, M. (January 2015) Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes. Plant Physiol, 167 (1). pp. 25-39. ISSN 0032-0889

Lawrence, Carolyn J., Ware, Doreen (2008) Databases and data mining. In: Handbook of Maize: History and Practice of Genetics and Genomics. Springer Science + Business Media LLC, pp. 659-672. ISBN 978-0-387-77862-4

Lee, B. h., Johnston, R., Yang, Y., Gallavotti, A., Kojima, M., Travencolo, B. A., Costa Lda, F., Sakakibara, H., Jackson, D. P. (May 2009) Studies of aberrant phyllotaxy1 Mutants of Maize Indicate Complex Interactions between Auxin and Cytokinin Signaling in the Shoot Apical Meristem. Plant Physiol, 150 (1). pp. 205-16. ISSN 0032-0889 (Print)

Leiboff, S., Li, X., Hu, H. C., Todt, N., Yang, J., Li, X., Yu, X., Muehlbauer, G. J., Timmermans, M. C., Yu, J., Schnable, P. S., Scanlon, M. J. (November 2015) Genetic control of morphometric diversity in the maize shoot apical meristem. Nat Commun, 6. p. 8974. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Lemmon, Z. H., Doebley, J. F. (September 2014) Genetic Dissection of a Genomic Region with Pleiotropic Effects on Domestication Traits in Maize Reveals Multiple Linked QTL. Genetics, 198 (1). pp. 345-53. ISSN 0016-6731

Li, L., Eichten, S. R., Shimizu, R., Petsch, K., Yeh, C. T., Wu, W., Chettoor, A. M., Givan, S. A., Cole, R. A., Fowler, J. E., Evans, M. M., Scanlon, M. J., Yu, J., Schnable, P. S., Timmermans, M. C., Springer, N. M., Muehlbauer, G. J. (February 2014) Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology, 15 (2). R40. ISSN 1465-6906

Li, L., Petsch, K., Shimizu, R., Liu, S., Xu, W. W., Ying, K., Yu, J., Scanlon, M. J., Schnable, P. S., Timmermans, M. C. P., Springer, N. M., Muehlbauer, G. J. (January 2013) Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. PLoS Genetics, 9 (1). Article number e1003202. ISSN 15537390 (ISSN)

Li, X. R., Zhu, C. S., Yeh, C. T., Wu, W., Takacs, E. M., Petsch, K. A., Tian, F., Bai, G. H., Buckler, E. S., Muehlbauer, G. J., Timmermans, M. C. P., Scanlon, M. J., Schnable, P. S., Yu, J. M. (December 2012) Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Research, 22 (12). pp. 2436-2444. ISSN 1088-9051

Lin, Guifang, He, Cheng, Zheng, Jun, Koo, Dal-Hoe, Le, Ha, Zheng, Huakun, Tamang, Tej Man, Lin, Jinguang, Liu, Yan, Zhao, Mingxia, Hao, Yangfan, McFraland, Frank, Wang, Bo, Qin, Yang, Tang, Haibao, McCarty, Donald R, Wei, Hairong, Cho, Myeong-Je, Park, Sunghun, Kaeppler, Heidi, Kaeppler, Shawn M, Liu, Yunjun, Springer, Nathan, Schnable, Patrick S, Wang, Guoying, White, Frank F, Liu, Sanzhen (June 2021) Chromosome-level genome assembly of a regenerable maize inbred line A188. Genome biology, 22 (1). p. 175. ISSN 1474-760X

Liu, Yu, Li, Huinan, Liu, Jie, Wang, Yuebin, Jiang, Chenglin, Zhou, Ziqi, Zhuo, Lin, Li, Wenqiang, Fernie, Alisdair R, Jackson, David, Yan, Jianbing, Luo, Yun (May 2024) The additive function of YIGE2 and YIGE1 in regulating maize ear length. The Plant Journal. ISSN 0960-7412

Liu, H., Niu, Y., Gonzalez-Portilla, P. J., Zhou, H., Wang, L., Zuo, T., Qin, C., Tai, S., Jansen, C., Shen, Y., Lin, H., Lee, M., Ware, D., Zhang, Z., Lubberstedt, T., Pan, G. (December 2015) An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize. BMC Genomics, 16 (1). p. 1078. ISSN 1471-2164 (Electronic)1471-2164 (Linking)

Liu, H., Jian, L., Xu, J., Zhang, Q., Zhang, M., Jin, M., Peng, Y., Yan, J., Han, B., Liu, J., Gao, F., Liu, X., Huang, L., Wei, W., Ding, Y., Yang, X., Li, Z., Zhang, M., Sun, J., Bai, M., Song, W., Chen, H., Sun, X., Li, W., Lu, Y., Liu, Y., Zhao, J., Qian, Y., Jackson, D., Fernie, A.R., Yan, J. (May 2020) High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize. Plant Cell, 32 (5). pp. 1397-1413. ISSN 1040-4651

Liu, J., Seetharam, A.S., Chougule, K., Ou, S., Swentowsky, K.W., Gent, J.I., Llaca, V., Woodhouse, M.R., Manchanda, N., Presting, G.G., Kudrna, D., Alabady, M., Hirsch, C.N., Fengler, K.A., Ware, D., Michael, T.P., Hufford, M. B., Dawe, R.K. (May 2020) Gapless Assembly of Maize Chromosomes Using Long-Read Technologies. Genome Biology, 21 (1). p. 121. ISSN 1474-7596

Liu, Lei, Chen, Richelle, Fugina, Christopher John, Siegel, Ben, Jackson, David (April 2021) High-Throughput and Low-Cost Genotyping Method for Plant Genome Editing. Curr Protoc, 1 (4). e100. ISSN 2691-1299

Liu, Lei, Gallagher, Joseph, Arevalo, Edgar Demesa, Chen, Richelle, Skopelitis, Tara, Wu, Qingyu, Bartlett, Madelaine, Jackson, David (March 2021) Enhancing grain-yield-related traits by CRISPR-Cas9 promoter editing of maize CLE genes. Nature Plants, 7 (3). pp. 287-294. ISSN 2055-026X

M

Maron, L. G., Guimaraes, C. T., Kirst, M., Albert, P. S., Birchler, J. A., Bradbury, P. J., Buckler, E. S., Coluccio, A. E., Danilova, T. V., Kudrna, D., Magalhaes, J. V., Pineros, M. A., Schatz, M. C., Wing, R. A., Kochian, L. V. (March 2013) Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America, 110 (13). pp. 5241-5246. ISSN 0027-8424

Martienssen, R. (April 1998) Chromosomal imprinting in plants. Current Opinion in Genetics & Development, 8 (2). pp. 240-244. ISSN 0959-437X

Martienssen, R. (April 1997) Evolutionary biology - The origin of maize branches out. Nature, 386 (6624). 443&445. ISSN 0028-0836

Martienssen, R. (April 1997) The origin of maize branches out. Nature, 386 (6624). p. 443. ISSN 0028-0836

Martienssen, R., Barkan, A., Taylor, W. C., Freeling, M. (1990) Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize. Genes and Development, 4 (3). pp. 331-343. ISSN 08909369 (ISSN)

Martienssen, R., Baron, A. (March 1994) Coordinate suppression of mutations caused by Robertson's mutator transposons in maize. Genetics, 136 (3). pp. 1157-1170. ISSN 0016-6731

Martienssen, R. A. (1996) Epigenetic Silencing of Mu Transposable Elements in Maize. In: Epigenetic Mechanisms of Gene Regulation. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., p. 593. ISBN 0270-1847

Martienssen, R. A., Barkan, A., Freeling, M., Taylor, W. C. (1989) Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. EMBO J, 8 (6). pp. 1633-1639. ISSN 0261-4189

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (April 2004) Sequencing the maize genome. Curr Opin Plant Biol, 7 (2). pp. 102-7. ISSN 1369-5266 (Print)

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (2004) Sequencing the maize genome. Current Opinion in Plant Biology, 7 (2). pp. 102-107. ISSN 13695266 (ISSN)

May, B. P., Liu, H., Vollbrecht, E., Senior, L., Rabinowicz, P. D., Roh, D., Pan, X. K., Stein, L., Freeling, M., Alexander, D., Martienssen, R. (September 2003) Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America, 100 (20). pp. 11541-11546. ISSN 0027-8424

McClintock, B. (September 1944) The Relation of Homozygous Deficiencies to Mutations and Allelic Series in Maize. Genetics, 29 (5). pp. 478-502. ISSN 0016-6731 (Print)0016-6731 (Linking)

McClintock, Barbara (1929) A 2n-1 chromosomal chimera in maize. The Journal of Heredity, 20. p. 218.

McClintock, Barbara (December 1964) Aspects of gene regulation in maize. In: Carnegie Institution of Washington Year Book No. 63, 1963-1964. Carnegie Institution of Washington, Washington, D.C., pp. 592-602.

McClintock, Barbara (December 1960) Chromosome constitutions of Mexican and Guatemalan races of maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 59 1959-1960. Carnegie Institution of Washington, Washington, D.C., pp. 461-472.

McClintock, Barbara (June 1929) Chromosome morphology in Zea mays. Science, 69 (1798). p. 629.

McClintock, Barbara (December 1955) Controlled mutation in maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 54, 1954-1955. Carnegie Institution of Washington, Washington, D.C., pp. 245-255.

McClintock, Barbara (December 1945) Cytogenetic studies of maize and Neurospora. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 44, 1944-1945. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 108-112.

McClintock, Barbara (December 1947) Cytogenetic studies of maize and Neurospora. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 46, 1946-1947. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 146-152.

McClintock, Barbara (1978) Development of the maize endosperm as revealed by clones. In: The clonal basis of development. Symposium of the Society for Developmental Biology; 36th . Academic Press, New York, pp. 217-237.

McClintock, Barbara (December 1963) Further studies of gene-control systems in maize. In: Carnegie Institution of Washington Year Book No. 62, 1962-1963. Carnegie Institution of Washington, Washington, D.C., pp. 486-493.

McClintock, Barbara (December 1961) Further studies of the suppressor-mutator system of control of gene action in maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 60, 1960-1961. Carnegie Institution of Washington, Washington, D.C., pp. 469-476.

McClintock, Barbara (December 1957) Genetic and cytological studies of maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 56, 1956-1957. Carnegie Institution of Washington, Washington, D.C., pp. 393-401.

McClintock, Barbara (December 1959) Genetic and cytological studies of maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 58 1958-1959. Carnegie Institution of Washington, Washington, D.C., pp. 452-456.

McClintock, Barbara (November 1953) Induction of instability at selected loci in maize. Genetics, 38 (6). pp. 579-599.

McClintock, Barbara (December 1942) Maize genetics. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 41, 1941-1942. Carnegie Institution of Washington, Washington, D.C., pp. 181-186.

McClintock, Barbara (December 1943) Maize genetics. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 42, 1942-1943. Carnegie Institution of Washington, Washington, D.C., pp. 148-152.

McClintock, Barbara (December 1944) Maize genetics. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 43, 1943-1944. Carnegie Institution of Washington, Washington, D.C., pp. 127-135.

McClintock, Barbara (December 1946) Maize genetics. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 45, 1945-1946. Carnegie Institution of Washington, Washington, D.C., pp. 176-186.

McClintock, Barbara (December 1948) Mutable loci in maize. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 47, 1947-1948. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 155-169.

McClintock, Barbara (December 1949) Mutable loci in maize. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 48, 1948-1949. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 142-154.

McClintock, Barbara (December 1950) Mutable loci in maize. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 49, 1949-1950. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 157-167.

McClintock, Barbara (December 1951) Mutable loci in maize. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 50, 1950-1951. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 174-181.

McClintock, Barbara (December 1952) Mutable loci in maize. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 51, 1951-1952. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 212-219.

McClintock, Barbara (December 1953) Mutation in maize. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 52, 1952-1953. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 227-237.

McClintock, Barbara (December 1956) Mutation in maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 55, 1955-1956. Carnegie Institution of Washington, Washington, D.C., pp. 323-332.

McClintock, Barbara (December 1954) Mutations in maize and chromosomal aberrations in Neurospora. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 53, 1953-1954. Carnegie Institution of Washington, Cold Spring Harbor, pp. 254-260.

McClintock, Barbara (December 1966) Regulation of pattern of gene expression by controlling elements in maize. In: Carnegie Institution of Washington Year Book 65, 1965-1966. Carnegie Institution of Washington, Washington, D.C., pp. 568-578.

McClintock, Barbara (1978) Significance of chromosome constitutions in tracing the origin and migration of races of maize in the Americas. In: Maize breeding and genetics. John Wiley & Sons, New York, pp. 159-184.

McClintock, Barbara (September 1961) Some parallels between gene control systems in maize and in bacteria. American Naturalist, 95 (884). pp. 265-277.

McClintock, Barbara (December 1962) Topographical relations between elements of control systems in maize. In: Carnegie Institution of Washington Year Book No. 61, 1961-1962. Carnegie Institution of Washington, Washington, D.C., pp. 448-461.

McClintock, Barbara (June 1965) The control of gene action in maize. Brookhaven Symposia in Biology, 18. pp. 162-184.

McClintock, Barbara (1932) A correlation of ring-shaped chromosomes with variegation in Zea mays. Proceedings of the National Academy of Sciences, 18 (12). pp. 677-681.

McClintock, Barbara (March 1929) A cytological and genetical study of triploid maize. Genetics, 14 (2). 180=222.

McClintock, Barbara (1930) A cytological demonstration of the location of an interchange between two non-homologous chromosomes of Zea Mays. Proceedings of the National Academy of Sciences, 16 (12). pp. 791-796.

McClintock, Barbara (1931) The order of the genes C, Sh and Wx in Zea mays with reference to a cytologically known point in the chromosome. Proceedings of the National Academy of Sciences, 17 (8). pp. 485-491.

McClintock, Barbara (June 1950) The origin and behavior of mutable loci in maize. Proceedings of the National Academy of Sciences, 36 (6). pp. 344-355.

McClintock, Barbara (1937) The production of maize plants mosaic for homozygous deficiencies: Simulation of the bm1 phenotype through loss of the Bm1 locus. Genetics, 22. p. 200.

McClintock, Barbara (December 1967) The states of a gene locus in maize. In: Carnegie Institution of Washington Year Book 66, 1966-1967. Carnegie Institution of Washington, Washington, D.C., pp. 664-672.

McClintock, Barbara (December 1958) The suppressor-mutator system of control of gene action in maize. In: Annual Report of the Director of the Department of Genetics Carnegie Institution of Washington Year Book No. 57, 1957-1958. Carnegie Institution of Washington, Washington, D.C., pp. 452-456.

McClintock, Barbara, Hill, Henry E. (1931) The cytological identification of the chromosome associated with the R-G linkage group in Zea mays. Genetics, 16 (2). pp. 175-190.

McClintock, Barbara, Kato, Takeo Angel, Blumenschein, Almiro (1981) Chromosome constitution of races of maize. Its significance in the interpretation of relationships between races and varieties in the Americas. Colegio de Pos graduados, Escuela National de Agricultura, Chapingo, Edo. Mexico.

McMullen, M. D., Kresovich, S., Villeda, Hector S., Bradbury, P. J., Li, H., Sun, Q., Flint-Garcia, S., Thornsberry, J., Acharya, C. B., Bottoms, C., Brown, P. J., Browne, C., Eller, M., Guill, K., Harjes, C., Kroon, D. E., Lepak, N.., Mitchell, S. E., Peterson, B., Pressoir, G., Romero, S., Rosas, M. O., Salvo, S., Yates, H., Hanson, M., Jones, E. G., Smith, S., Glaubitz, J. C., Goodman, M. M., Ware, D. H., Holland, J. B., Buckler, E. S. (August 2009) Genetic Properties of the Maize Nested Association Mapping Population. Science, 325 (5941). pp. 737-740.

Meeley, R. B., Johal, G. S., Briggs, S. P., Walton, J. D. (January 1992) A Biochemical Phenotype for a Disease Resistance Gene of Maize. Plant Cell, 4 (1). pp. 71-77. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Mohanty, A., Yang, Y., Luo, A., Sylvester, A. W., Jackson, D. P. (2009) Methods for generation and analysis of fluorescent protein-tagged maize lines. Methods in Molecular Biology, 526. pp. 71-89.

Mohanty, A., Luo, A., DeBlasio, S. L., Ling, X., Yang, Y., Tuthill, D. E., Williams, K. E., Hill, D., Zadrozny, T., Chan, A., Sylvester, A. W., Jackson, D. P. (February 2009) Advancing Cell Biology and Functional Genomics in Maize Using Fluorescent Protein-Tagged Lines. Plant Physiol., 149 (2). pp. 601-605.

Monaco, M. K., Sen, T. Z., Dharmawardhana, P. D., Ren, L., Schaeffer, M., Naithani, S., Amarasinghe, V., Thomason, J., Harper, L., Gardiner, J., Cannon, E. K. S., Lawrence, C. J., Ware, D., Jaiswal, P. (March 2013) Maize Metabolic Network Construction and Transcriptome Analysis. Plant Genome, 6 (1). ISSN 1940-3372

Myles, S., Chia, J. M., Hurwitz, B. L., Simon, C., Zhong, G. Y., Buckler, E., Ware, D. H. (January 2010) Rapid Genomic Characterization of the Genus Vitis. PLoS ONE, 5 (1). ISSN 1932-6203

N

Nie, Yongxin, Wang, Hui, Zhang, Guan, Ding, Haiping, Han, Beibei, Liu, Lei, Shi, Jian, Du, Jiyuan, Li, Xiaohu, Li, Xinzheng, Zhao, Yajie, Zhang, Xiaocong, Liu, Changlin, Weng, Jianfeng, Li, Xinhai, Zhang, Xiansheng, Zhao, Xiangyu, Pan, Guangtang, Jackson, David, Li, Qin-Bao, Stinard, Philip S, Arp, Jennifer, Sachs, Martin M, Moose, Steven, Hunter, Charles T, Wu, Qingyu, Zhang, Zhiming (January 2024) The maize PLASTID TERMINAL OXIDASE (PTOX) locus controls the carotenoid content of kernels. The Plant Journal. ISSN 0960-7412 (Public Dataset)

Nie, Shujun, Wang, Bo, Ding, Haiping, Lin, Haijian, Zhang, Li, Li, Qigui, Wang, Yujiao, Zhang, Bin, Liang, Anping, Zheng, Qi, Wang, Hui, Lv, Huayang, Zhu, Kun, Jia, Minghui, Wang, Xiaotong, Du, Jiyuan, Zhao, Runtai, Jiang, Zhenzhen, Xia, Caina, Qiao, Zhenghao, Li, Xiaohu, Liu, Boyan, Zhu, Hongbo, An, Rong, Li, Yucui, Jiang, Qian, Chen, Benfang, Zhang, Hongkai, Wang, Dening, Tang, Changxiao, Yuan, Yang, Dai, Jie, Zhan, Jing, He, Weiqiang, Wang, Xuebo, Shi, Jian, Wang, Bin, Gong, Min, He, Xiujing, Li, Peng, Huang, Li, Li, Hui, Pan, Chao, Huang, Hong, Yuan, Guangsheng, Lan, Hai, Nie, Yongxin, Li, Xinzheng, Zhao, Xiangyu, Zhang, Xiansheng, Pan, Guangtang, Wu, Qingyu, Xu, Fang, Zhang, Zhiming (July 2021) Genome assembly of the Chinese maize elite inbred line RP125 and its EMS mutant collection provide new resources for maize genetics research and crop improvement. The Plant journal : for cell and molecular biology. ISSN 1365-313X

Ning, Qiang, Jian, Yinan, Du, Yanfang, Li, Yunfu, Shen, Xiaomeng, Jia, Haitao, Zhao, Ran, Zhan, Jimin, Yang, Fang, Jackson, David, Liu, Lei, Zhang, Zuxin (October 2021) An ethylene biosynthesis enzyme controls quantitative variation in maize ear length and kernel yield. Nature Communications, 12 (1). p. 5832. ISSN 2041-1723

Nogueira, F. T., Madi, S., Chitwood, D. H., Juarez, M. T., Timmermans, M. C. P. (April 2007) Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev, 21 (7). pp. 750-5. ISSN 0890-9369 (Print)

Nogueira, F. T. S., Chitwood, D. H., Madi, S., Ohtsu, K., Schnable, P. S., Scanlon, M. J., Timmermans, M. C. P. (January 2009) Regulation of Small RNA Accumulation in the Maize Shoot Apex. Plos Genetics, 5 (1). e1000320. ISSN 1553-7390

Nogueira, F. T. S., Timmermans, M. C. (November 2007) An Interplay Between Small Regulatory RNAs Patterns Leaves. Plant Signaling & Behavior, 2 (6). pp. 519-21. ISSN 1559-2316 (Print)

Nussaume, L., Harrison, K., Klimyuk, V., Martienssen, R., Sundaresan, V., Jones, J. D. G. (November 1995) Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator. Molecular & General Genetics, 249 (1). pp. 91-101. ISSN 0026-8925

O

Ohtsu, K., Smith, M. B., Emrich, S. J., Borsuk, L. A., Zhou, R. L., Chen, T. L., Zhang, X. L., Timmermans, M. C. P., Beck, J., Buckner, B., Janick-Buckner, D., Nettleton, D., Scanlon, M. J., Schnable, P. S. (November 2007) Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant Journal, 52 (3). pp. 391-404. ISSN 0960-7412

Ortiz-Ramirez, C., Arevalo, E. D., Xu, X., Jackson, D. P., Birnbaum, K. D. (August 2018) An Efficient Cell Sorting Protocol for Maize Protoplasts. Curr Protoc Plant Biol, 3 (3). e20072.

Ortiz-Ramírez, Carlos, Guillotin, Bruno, Xu, Xiaosa, Rahni, Ramin, Zhang, Sanqiang, Yan, Zhe, Coqueiro Dias Araujo, Poliana, Demesa-Arevalo, Edgar, Lee, Laura, Van Eck, Joyce, Gingeras, Thomas R, Jackson, David, Gallagher, Kimberly L, Birnbaum, Kenneth D (December 2021) Ground tissue circuitry regulates organ complexity in maize and Setaria. Science, 374 (6572). pp. 1247-1252. ISSN 0036-8075

Ou, Shujun, Collins, Tyler, Qiu, Yinjie, Seetharam, Arun, Menard, Claire, Manchanda, Nancy, Gent, Jonathan, Schatz, Michael, Anderson, Sarah, Hufford, Matthew, Hirsch, Candice (2022) Differences in activity and stability drive transposable element variation in tropical and temperate maize. (Submitted)

Ou, Shujun, Scheben, Armin, Collins, Tyler, Qiu, Yinjie, Seetharam, Arun S, Menard, Claire C, Manchanda, Nancy, Gent, Jonathan I, Schatz, Michael C, Anderson, Sarah N, Hufford, Matthew B, Hirsch, Candice N (September 2024) Differences in activity and stability drive transposable element variation in tropical and temperate maize. Genome Research. ISSN 1088-9051

Ou, S. J., Liu, J. N., Chougule, K. M., Fungtammasan, A., Seetharam, A.S., Stein, J. C., Llaca, V., Manchanda, N., Gilbert, A. M., Wei, S. R., Chin, C. S., Hufnagel, D. E., Pedersen, S., Snodgrass, S. J., Fengler, K., Woodhouse, M., Walenz, B. P., Koren, S., Phillippy, A. M., Hannigan, B. T., Dawe, R. K., Hirsch, C. N., Hufford, M. B., Ware, D. (May 2020) Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature Communications, 11 (1). p. 2288. ISSN 2041-1723

P

Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A., McCombie, W. R. (December 2003) Maize genome sequencing by methylation filtrations. Science, 302 (5653). pp. 2115-2117. ISSN 0036-8075

Park, S. H., Chin, H. G., Cho, M. J., Martienssen, R. A., Han, C. D. (April 2000) Inhibitor of striate conditionally suppresses cell proliferation in variegated maize. Genes & Development, 14 (8). pp. 1005-1016. ISSN 0890-9369

Pautler, M., Eveland, A. L., LaRue, T., Yang, F., Weeks, R., Lunde, C., Je, B. I., Meeley, R., Komatsu, M., Vollbrecht, E., Sakai, H., Jackson, D. (January 2015) FASCIATED EAR4 Encodes a bZIP Transcription Factor That Regulates Shoot Meristem Size in Maize. Plant Cell, 27 (1). pp. 104-120. ISSN 1040-4651

Pautler, M., Tanaka, W., Hirano, H. Y., Jackson, D. (March 2013) Grass meristems I: Shoot apical meristem maintenance, axillary meristem determinacy and the floral transition. Plant and Cell Physiology, 54 (3). pp. 302-312. ISSN 00320781 (ISSN)

Penning, B. W., Hunter, C. T., Tayengwa, R., Eveland, A. L., Dugard, C. K., Olek, A. T., Vermerris, W., Koch, K. E., McCarty, D. R., Davis, M. F., Thomas, S. R., McCann, M. C., Carpita, N. C. (December 2009) Genetic resources for maize cell wall biology. Plant Physiology, 151 (4). pp. 1703-1728.

Peterson, T. (October 1990) Intragenic transposition of Ac generates a new allele of the maize P gene. Genetics, 126 (2). pp. 469-76. ISSN 0016-6731 (Print)0016-6731 (Linking)

Petsch, K., Manzotti, P. S., Tam, O. H., Meeley, R., Hammell, M., Consonni, G., Timmermans, M. C. (August 2015) Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development. Plant Cell, 27 (8). pp. 2163-2177. ISSN 1532-298X (Electronic)1040-4651 (Linking)

R

Rabinowicz, P. D., Braun, E. L., Wolfe, A. D., Bowen, B., Grotewold, E. (September 1999) Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants. Genetics, 153 (1). pp. 427-44. ISSN 0016-6731 (Print)

Rabinowicz, P. D., Schutz, K., Dedhia, N., Yordan, C., Parnell, L. D., Stein, L., McCombie, W. R., Martienssen, R. A. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics, 23 (3). pp. 305-308. ISSN 10614036 (ISSN)

Randolph, Lowell Fitz, McClintock, Barbara (January 1926) Polypoidy in Zea mays L. The American Naturalist, 60 (666). pp. 99-102.

Regulski, M., Lu, Z., Kendall, J., Donoghue, M. T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., McCombie, W. R., Tingey, S., Rafalski, A., Hicks, J., Ware, D., Martienssen, R. (June 2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research, 23 (10). pp. 1651-1662. ISSN 10889051 (ISSN)

Renaudin, J. P., Colasanti, J., Rime, H., Yuan, Z., Sundaresan, V. (July 1994) Cloning of four cyclins from maize indicates that higher plants have three structurally distinct groups of mitotic cyclins. Proc Natl Acad Sci U S A, 91 (15). pp. 7375-9. ISSN 0027-8424 (Print)

Rhoades, Marcus Morton, McClintock, Barbara (1935) The cytogenetics of maize. Botanical Review, 1. pp. 292-325.

Robil, Janlo M, Tran, Thu M (October 2024) Bigger meristem, higher yield? The roles of REL2 and RELK in maize meristem function and yield enhancement. Plant Physiology. kiae552. ISSN 0032-0889

Rodriguez-Leal, D., Xu, C., Kwon, C. T., Soyars, C., Demesa-Arevalo, E., Man, J., Liu, L., Lemmon, Z. H., Jones, D. S., Van Eck, J., Jackson, D. P., Bartlett, M. E., Nimchuk, Z. L., Lippman, Z. B. (April 2019) Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nat Genet, 51 (5). pp. 786-792. ISSN 1061-4036

S

Satoh-Nagasawa, N., Nagasawa, N., Malcomber, S., Sakai, H., Jackson, D. (May 2006) A trehalose metabolic enzyme controls inflorescence architecture in maize. Nature, 441 (7090). pp. 227-30. ISSN 1476-4687 (Electronic)

Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M., Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W. (November 2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326 (5956). pp. 1112-5. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Settles, A. M., Baron, A., Barkan, A., Martienssen, R. A. (January 2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics, 157 (1). pp. 349-360. ISSN 0016-6731

Settles, A. M., Martienssen, R. (December 1998) Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology, 8 (12). pp. 494-501. ISSN 0962-8924

Settles, A. M., Yonetani, A., Baron, A., Bush, D. R., Cline, K., Martienssen, R. (November 1997) Sec-independent protein translocation by the maize Hcf106 protein. Science, 278 (5342). pp. 1467-1470. ISSN 0036-8075

Shen, Xiaomeng, Liu, Lei, Tran, Thu, Ning, Qiang, Li, Manfei, Huang, Liangliang, Zhao, Ran, Li, Yunfu, Qing, Xiangyu, Jackson, David, Bai, Yan, Song, Weibin, Lai, Jinsheng, Zhang, Zuxin, Zhao, Haiming (September 2024) KRN5b regulates maize kernel row number through mediating phosphoinositol signalling. Plant Biotechnology Journal. ISSN 1467-7652 (Public Dataset)

Shull, George Harrison (December 1911) Experiments with maize. Botanical Gazette, 52 (6). pp. 480-485.

Shull, George Harrison (April 1911) The genotypes of maize. The American Naturalist, 45 (532). pp. 234-252.

Skirpan, A., Culler, A. H., Gallavotti, A., Jackson, D., Cohen, J. D., McSteen, P. (March 2009) BARREN INFLORESCENCE2 Interaction with ZmPIN1a Suggests a Role in Auxin Transport During Maize Inflorescence Development. Plant and Cell Physiology, 50 (3). pp. 652-657. ISSN 0032-0781

Smith, Laurie G., Jackson, David, Hake, Sarah (1995) Expression of knotted1 marks shoot meristem formation during maize embryogenesis. Developmental Genetics, 16 (4). pp. 344-348. ISSN 1520-6408

Somssich, M., Je, B. I., Simon, R., Jackson, D. (September 2016) CLAVATA-WUSCHEL signaling in the shoot meristem. Development, 143 (18). pp. 3238-48. ISSN 1477-9129 (Electronic)0950-1991 (Linking)

Sprague, Stuart A, Tamang, Tej Man, Steiner, Trevor, Wu, Qingyu, Hu, Ying, Kakeshpour, Tayebeh, Park, Jungeun, Yang, Jian, Peng, Zhao, Bergkamp, Blake, Somayanda, Impa, Peterson, Morgan, Oliveira Garcia, Ely, Hao, Yangfan, St Amand, Paul, Bai, Guihua, Nakata, Paul A, Rieu, Ivo, Jackson, David P, Cheng, Ninghui, Valent, Barbara, Hirschi, Kendal D, Jagadish, Sv Krishna, Liu, Sanzhen, White, Frank F, Park, Sunghun (June 2022) Redox-engineering enhances maize thermotolerance and grain yield in the field. Plant Biotechnology Journal. ISSN 1467-7644

Springer, N. M., Anderson, S. N., Andorf, C. M., Ahern, K. R., Bai, F., Barad, O., Barbazuk, W. B., Bass, H. W., Baruch, K., Ben-Zvi, G., Buckler, E. S., Bukowski, R., Campbell, M. S., Cannon, E. K. S., Chomet, P., Dawe, R. K., Davenport, R., Dooner, H. K., Du, L. H., Du, C., Easterling, K. A., Gault, C., Guan, J. C., Hunter, C. T., Jander, G., Jiao, Y., Koch, K. E., Kol, G., Kollner, T. G., Kudo, T., Li, Q., Lu, F., Mayfield-Jones, D., Mei, W., McCarty, D. R., Noshay, J. M., Portwood, J. L., Ronen, G., Settles, A. M., Shem-Tov, D., Shi, J., Soifer, I., Stein, J. C., Stitzer, M. C., Suzuki, M., Vera, D. L., Vollbrecht, E., Vrebalov, J. T., Ware, D., Wei, S., Wimalanathan, K., Woodhouse, M. R., Xiong, W., Brutnell, T. P. (July 2018) The maize W22 genome provides a foundation for functional genomics and transposon biology. Nat Genet, 50 (9). pp. 1282-1288. ISSN 1061-4036

Steggerda, Morris (1930) Effect of somatic injury upon yield in corn. Plant Physiology, 5 (3). pp. 432-435.

Sun, Yonghao, Dong, Liang, Kang, Lu, Zhong, Wanshun, Jackson, David, Yang, Fang (June 2024) Progressive meristem and single-cell transcriptomes reveal the regulatory mechanisms underlying maize inflorescence development and sex differentiation. Molecular Plant, 17 (7). pp. 1019-1037. ISSN 1674-2052 (Public Dataset)

Sun, S., Zhou, Y., Chen, J., Shi, J., Zhao, H., Zhao, H., Song, W., Zhang, M., Cui, Y., Dong, X., Liu, H., Ma, X., Jiao, Y., Wang, B., Wei, X., Stein, J. C., Glaubitz, J. C., Lu, F., Yu, G., Liang, C., Fengler, K., Li, B., Rafalski, A., Schnable, P. S., Ware, D. H., Buckler, E. S., Lai, J. (July 2018) Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. Nat Genet, 50 (9). pp. 1289-1295. ISSN 1061-4036

Sun, Qin, Li, Yunfu, Gong, Dianming, Hu, Aoqing, Zhong, Wanshun, Zhao, Hailiang, Ning, Qiang, Tan, Zengdong, Liang, Kun, Mu, Luyao, Jackson, David, Zhang, Zuxin, Yang, Fang, Qiu, Fazhan (September 2022) A NAC-EXPANSIN module enhances maize kernel size by controlling nucellus elimination. Nature Communications, 13 (1). p. 5708. ISSN 2041-1723

Sun, Yonghao, Dong, Liang, Zhang, Ying, Lin, Da, Xu, Weize, Ke, Changxiong, Han, Linqian, Deng, Lulu, Li, Guoliang, Jackson, David, Li, Xingwang, Yang, Fang (June 2020) 3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize. Genome Biology, 21 (1). p. 143. ISSN 1474-760X

Swanson-Wagner, R. A., Eichten, S. R., Kumari, S., Tiffin, P., Stein, J. C., Ware, D. H., Springer, N. M. (December 2010) Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Research, 20 (12). pp. 1689-1699.

Swentowsky, Kyle W (January 2024) A Bushel of WUSCHEL is Too Much: Uncovering the Role of Cytokinin cis-Regulatory Elements in the Maize WUSCHEL Promoter. Plant Physiology. kiae016. ISSN 0032-0889

T

Taguchi-Shiobara, F., Yuan, Z., Hake, S., Jackson, D. (October 2001) The fasciated ear2 gene encodes a leucine-rich repeat receptor-like protein that regulates shoot meristem proliferation in maize. Genes & Development, 15 (20). pp. 2755-2766. ISSN 0890-9369

Takacs, E. M., Li, J., Du, C., Ponnala, L., Janick-Buckner, D., Yu, J., Muehlbauer, G. J., Schnable, P. S., Timmermans, M. C. P., Sun, Q., Nettleton, D., Scanlon, M. J. (August 2012) Ontogeny of the maize shoot apical meristem. Plant Cell, 24 (8). pp. 3219-3234.

Tanaka, W., Pautler, M., Jackson, D., Hirano, H. Y. (March 2013) Grass meristems II: Inflorescence architecture, flower development and meristem fate. Plant and Cell Physiology, 54 (3). pp. 313-324. ISSN 00320781 (ISSN)

Tello-Ruiz, M. K., Marco, C. F., Hsu, F. M., Khangura, R. S., Qiao, P., Sapkota, S., Stitzer, M. C., Wasikowski, R., Wu, H., Zhan, J., Chougule, K., Barone, L. C., Ghiban, C., Muna, D., Olson, A. C., Wang, L., Ware, D., Micklos, D. A. (October 2019) Double triage to identify poorly annotated genes in maize: The missing link in community curation. PLoS ONE, 14 (10). Article number e0224086. ISSN 19326203 (ISSN)

Thiebaut, F., Rojas, C. A., Grativol, C., Motta, M. R., Vieira, T., Regulski, M., Martienssen, R. A., Farinelli, L., Hemerly, A. S., Ferreira, P. C. G. (September 2014) Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. BMC Genomics, 15. p. 766. ISSN 1471-2164

Thomas, S. R., Meglen, B., Davis, M., Vollbrecht, E. W. (March 2000) Identification of maize cell-wall mutations using near-IR spectroscopy: Implications for biomass to ethanol conversion. Abstracts of Papers of the American Chemical Society, 219. U525-U525. ISSN 0065-7727

Thomas, S. R., Vollbrecht, E. W., Meglen, R. (April 2001) Functional genomics approach to maize cell wall biochemistry. Abstracts of Papers of the American Chemical Society, 221. U193-U193. ISSN 0065-7727

Thompson, A. M., Crants, J., Schnable, P. S., Yu, J., Timmermans, M. C. P., Springer, N. M., Scanlon, M. J., Muehlbauer, G. J. (May 2014) Genetic control of maize shoot apical meristem architecture. G3: Genes, Genomes, Genetics, 4 (7). pp. 1327-1337. ISSN 21601836

Thompson, A. M., Yu, J., Timmermans, M. C., Schnable, P., Crants, J. C., Scanlon, M. J., Muehlbauer, G. J. (May 2015) Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3 (Bethesda), 5 (5). pp. 819-27. ISSN 2160-1836 (Electronic)2160-1836 (Linking)

Timmermans, M. C., Brutnell, T. P., Becraft, P. W. (September 2004) The 46th Annual Maize Genetics Conference. Unlocking the secrets of the maize genome. Plant Physiol, 136 (1). pp. 2633-40. ISSN 0032-0889 (Print)

Timmermans, M. C. P., Hudson, A., Becraft, P. W., Nelson, T. (April 1999) ROUGH SHEATH2: A Myb protein that represses knox homeobox genes in maize lateral organ primordia. Science, 284 (5411). pp. 151-153. ISSN 0036-8075

Tran, Thu M, Demesa-Arevalo, Edgar, Kitagawa, Munenori, Garcia-Aguilar, Marcelina, Grimanelli, Daniel, Jackson, David (April 2021) An Optimized Whole-Mount Immunofluorescence Method for Shoot Apices. Curr Protoc, 1 (4). e101. ISSN 2691-1299

U

Urano, D., Jackson, D., Jones, A. M. (May 2015) A G protein alpha null mutation confers prolificacy potential in maize. Journal of Experimental Botany, 66 (15). pp. 4511-4515. ISSN 0022-0957

V

Vollbrecht, E., Springer, P. S., Goh, L., Buckler, E. S. th, Martienssen, R. (August 2005) Architecture of floral branch systems in maize and related grasses. Nature, 436 (7054). pp. 1119-26. ISSN 1476-4687 (Electronic)

W

Wang, Jinbiao, Zheng, Qi, Zhang, Ruizhong, Huang, Zhaoyu, Wu, Qingyu, Liu, Lei, Ning, Qiang, Jackson, David, Xu, Fang (September 2024) Heterozygous fasciated ear mutations improve yield traits in inbred and hybrid maize lines. Plant Physiology. kiae472. ISSN 0032-0889

Wang, Yuebin, Luo, Yun, Guo, Xing, Li, Yunfu, Yan, Jiali, Shao, Wenwen, Wei, Wenjie, Wei, Xiaofeng, Yang, Tao, Chen, Jing, Chen, Lihua, Ding, Qian, Bai, Minji, Zhuo, Lin, Li, Li, Jackson, David, Zhang, Zuxin, Xu, Xun, Yan, Jianbing, Liu, Huan, Liu, Lei, Yang, Ning (May 2024) A spatial transcriptome map of the developing maize ear. Nature Plants. ISSN 2055-0278 (Public Dataset)

Wang, B., Regulski, M., Tseng, E., Olson, A., Goodwin, S., McCombie, W. R., Ware, D. (June 2018) A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing. Genome Res, 28 (6). pp. 921-932. ISSN 1088-9051

Wang, B., Tseng, E., Regulski, M., Clark, T. A., Hon, T., Jiao, Y., Lu, Z., Olson, A., Stein, J. C., Ware, D. (June 2016) Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing. Nat Commun, 7. p. 11708. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Wang, X., Chen, Q., Wu, Y., Lemmon, Z. H., Xu, G., Huang, C., Liang, Y., Xu, D., Li, D., Doebley, J. F., Tian, F. (March 2018) Genome-wide analysis of transcriptional variability in a large maize-teosinte population. Mol Plant, 11 (3). pp. 443-459. ISSN 1674-2052

Wang, B., Tseng, E., Baybayan, P., Eng, K., Regulski, M., Jiao, Y., Wang, L., Olson, A., Chougule, K., Buren, P. V., Ware, D. (February 2020) Variant phasing and haplotypic expression from long-read sequencing in maize. Commun Biol, 3 (1). p. 78. ISSN 2399-3642 (Public Dataset)

Wang, L., Lu, Z., Delabastide, M., Van Buren, P., Wang, X., Ghiban, C., Regulski, M., Drenkow, J., Xu, X., Ortiz-Ramirez, C., Marco, C.F., Goodwin, S., Dobin, A., Birnbaum, K. D., Jackson, D. P., Martienssen, R. A., McCombie, W. R., Micklos, D. A., Schatz, M. C., Ware, D. H., Gingeras, T. R. (March 2020) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. Frontiers in Plant Science, 11 (289). ISSN 1664-462X (Public Dataset)

Wang, Liya, Lu, Zhenyuan, delaBastide, Melissa, Van Buren, Peter, Wang, Xiaofei, Ghiban, Cornel, Regulski, Michael, Drenkow, Jorg, Xu, Xiaosa, Ortiz-Ramirez, Carlos, Fernandez-Marco, Cristina, Goodwin, Sara, Dobin, Alexander, Birnbaum, Kenneth, Jackson, David, Martienssen, Robert, McCombie, William, Micklos, David, Schatz, Michael, Ware, Doreen, Gingeras, Thomas (November 2019) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. BioRxiv. (Unpublished)

Wear, E. E., Song, J., Zynda, G., LeBlanc, C., Lee, T. J., Mickelson-Young, L., Concia, L., Mulvaney, P., Szymanski, E. S., Allen, G. C., Martienssen, R., Vaughn, M. W., Hanley-Bowdoin, L., Thompson, W. (September 2017) Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays L.) root tips. Plant Cell, 29 (9). pp. 2126-49. ISSN 1040-4651

Wear, Emily E, Song, Jawon, Zynda, Gregory J, Mickelson-Young, Leigh, LeBlanc, Chantal, Lee, Tae-Jin, Deppong, David O, Allen, George C, Martienssen, Robert A, Vaughn, Matthew W, Hanley-Bowdoin, Linda, Thompson, William F (October 2020) Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLoS Genetics, 16 (10). e1008623. ISSN 1553-7404

Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J., Lin, J., Kim, H., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K., Wing, R. A. (November 2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS genetics, 5 (11). e1000728. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Wei, F., Zhang, J., Zhou, S., He, R., Schaeffer, M., Collura, K., Kudrna, D., Faga, B. P., Wissotski, M., Golser, W., Rock, S. M., Graves, T. A., Fulton, R. S., Coe, E., Schnable, P. S., Schwartz, D. C., Ware, D. H., Clifton, S. W., Wilson, R. K., Wing, R. A. (November 2009) The physical and genetic framework of the maize b73 genome. PLoS Genet, 5 (11). e1000715. ISSN 1553-7404 (Electronic)

Weiss, C. A., Garnaat, C. W., Mukai, K., Hu, Y., Ma, H. (September 1994) Isolation of cDNAs encoding guanine nucleotide-binding protein beta-subunit homologues from maize (ZGB1) and Arabidopsis (AGB1). Proc Natl Acad Sci U S A, 91 (20). pp. 9554-8. ISSN 0027-8424 (Print)

Whipple, C. J., Hall, D. H., DeBlasio, S. L., Taguchi-Shiobara, F., Schmidt, R. J., Jackson, D. P. (March 2010) A Conserved Mechanism of Bract Suppression in the Grass Family. Plant Cell. ISSN 1532-298X (Electronic) 1040-4651 (Linking)

Whipple, C. J., Kebrom, T. H., Weber, A. L., Yang, F., Hall, D., Meeley, R., Schmidt, R., Doebley, J., Brutnell, T. P., Jackson, D. P. (August 2011) grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses. Proceedings of the National Academy of Sciences of the United States of America, 108 (33). E506-E512. ISSN 0027-8424

Wittmeyer, K., Cui, J., Chatterjee, D., Lee, T. F., Tan, Q., Xue, W., Jiao, Y., Wang, P. H., Gaffoor, I., Ware, D., Meyers, B. C., Chopra, S. (December 2018) The Dominant and Poorly Penetrant Phenotypes of Maize Unstable factor for orange1 Are Caused by DNA Methylation Changes at a Linked Transposon. Plant Cell, 30 (12). pp. 3006-3023. ISSN 1040-4651

Wu, Q., Luo, A., Zadrozny, T., Sylvester, A., Jackson, D. (2013) Fluorescent protein marker lines in maize: generation and applications. The International Journal of Developmental Biology, 57 (6-8). pp. 535-43. ISSN 0214-6282

Wu, Q., Regan, M., Furukawa, H., Jackson, D. (April 2018) Role of heterotrimeric Galpha proteins in maize development and enhancement of agronomic traits. PLoS Genet, 14 (4). e1007374. ISSN 1553-7390

Wu, Q., Shigaki, T., Han, J. S., Kim, C. K., Hirschi, K. D., Park, S. (December 2012) Ectopic expression of a maize calreticulin mitigates calcium deficiency-like disorders in sCAX1-expressing tobacco and tomato. Plant Molecular Biology, 80 (6). pp. 609-619.

Wu, Q., Xu, F., Liu, L., Char, S. N., Ding, Y., Je, B. I., Schmelz, E., Yang, B., Jackson, D. (December 2019) The maize heterotrimeric G protein beta subunit controls shoot meristem development and immune responses. Proc Natl Acad Sci U S A, 117 (3). pp. 1799-1805. ISSN 0027-8424 (Public Dataset)

Wu, Qingyu, Xu, Fang, Jackson, David (October 2018) All together now, a magical mystery tour of the maize shoot meristem. Current Opinion in Plant Biology, 45 (Part A). pp. 26-35. ISSN 1369-5266

X

Xu, X., Crow, M., Rice, B. R., Li, F., Harris, B., Liu, L., Demesa-Arevalo, E., Lu, Z., Wang, L., Fox, N., Wang, X., Drenkow, J., Luo, A., Char, S. N., Yang, B., Sylvester, A. W., Gingeras, T. R., Schmitz, R. J., Ware, D., Lipka, A. E., Gillis, J., Jackson, D. (December 2020) Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Dev Cell, S1534- (20). pp. 31021-31022. ISSN 1534-5807

Y

Yang, Ning, Wang, Yuebin, Luo, Yun, Guo, Xing, Li, Yunfu, Yan, Jiali, Shao, Wenwen, Wei, Wenjie, Jackson, David, Zhang, Zuxin, Yan, Jianbing, Liu, Huan, Liu, Lei (June 2023) A spatial transcriptome map of developing maize ear. Research square. (Public Dataset) (Submitted)

Yang, F., Bui, H. T., Pautler, M., Llaca, V., Johnston, R., Lee, B. H., Kolbe, A., Sakai, H., Jackson, D. (January 2015) A Maize Glutaredoxin Gene, Abphyl2, Regulates Shoot Meristem Size and Phyllotaxy. Plant Cell, 27 (1). pp. 121-131. ISSN 1040-4651

Yang, N., Liu, J., Gao, Q., Gui, S., Chen, L., Yang, L., Huang, J., Deng, T., Luo, J., He, L., Wang, Y., Xu, P., Peng, Y., Shi, Z., Lan, L., Ma, Z., Yang, X., Zhang, Q., Bai, M., Li, S., Li, W., Liu, L., Jackson, D., Yan, J. (June 2019) Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement. Nat Genet, 51 (6). pp. 1052-1059. ISSN 1061-4036

Yang, N., Xu, X. W., Wang, R. R., Peng, W. L., Cai, L., Song, J. M., Li, W., Luo, X., Niu, L., Wang, Y., Jin, M., Chen, L., Luo, J., Deng, M., Wang, L., Pan, Q., Liu, F., Jackson, D., Yang, X., Chen, L. L., Yan, J. (November 2017) Contributions of Zea mays subspecies mexicana haplotypes to modern maize. Nat Commun, 8 (1). p. 1874. ISSN 2041-1723

Yang, RS, Xu, F, Wang, YM, Zhong, WS, Dong, L, Shi, YN, Tang, TJ, Sheng, HJ, Jackson, D, Yang, F (December 2021) Glutaredoxins regulate maize inflorescence meristem development via redox control of TGA transcriptional activity. Nature Plants. ISSN 2055-0278

Yu, Yanhui, Li, Wenqiang, Liu, Yuanfang, Liu, Yanjun, Zhang, Qinzhi, Ouyang, Yidan, Ding, Wenya, Xue, Yu, Zou, Yilin, Yan, Junjun, Jia, Anqiang, Yan, Jiali, Hao, Xinfei, Gou, Yujie, Zhai, Zhaowei, Liu, Longyu, Zheng, Yang, Zhang, Bao, Xu, Jieting, Yang, Ning, Xiao, Yingjie, Zhuo, Lin, Lai, Zhibing, Yin, Ping, Liu, Hai-Jun, Fernie, Alisdair R, Jackson, David, Yan, Jianbing (November 2024) A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell. ISSN 0092-8674 (Public Dataset)

Z

Zalabák, David, Johnová, Patricie, Plíhal, Ondřej, Šenková, Karolina, Šamajová, Olga, Jiskrová, Eva, Novák, Ondřej, Jackson, David, Mohanty, Amitabh, Galuszka, Petr (March 2016) Maize cytokinin dehydrogenase isozymes are predominantly localized to the vacuole. Plant Physiology and Biochemistry, 104. pp. 114-124. ISSN 0981-9428

Zhang, L., Chia, J. M., Kumari, S., Stein, J. C., Liu, Z., Narechania, A., Maher, C. A., Guill, K., McMullen, M. D., Ware, D. H. (November 2009) A Genome-Wide Characterization of MicroRNA Genes in Maize. PLoS Genet, 5 (11). e1000716. ISSN 1553-7404 (Electronic)

Zhang, S., Williams-Carrier, R., Jackson, D., Lemaux, P. G. (April 1998) Expression of CDC2Zm and KNOTTED1 during in-vitro axillary shoot meristem proliferation and adventitious shoot meristem formation in maize (Zea mays L.) and barley (Hordeum vulgare L.). Planta, 204 (4). pp. 542-549. ISSN 00320935 (ISSN)

Zhang, X., Douglas, R. N., Strable, J., Lee, M., Buckner, B., Janick-Buckner, D., Schnable, P. S., Timmermans, M. C. P., Scanlon, M. J. (August 2012) Punctate vascular expression1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway. Plant Physiology, 159 (4). pp. 1453-1462. ISSN 0032-0889

Zhao, W., Canaran, P., Jurkuta, R., Fulton, T., Glaubitz, J., Buckler, E., Doebley, J., Gaut, B., Goodman, M., Holland, J., Kresovich, S., McMullen, M., Stein, L. D., Ware, D. (January 2006) Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res, 34 (Databa). D752-7. ISSN 1362-4962 (Electronic)

Zhao, Z. Y., Sundaresan, V. (September 1991) Binding sites for maize nuclear proteins in the terminal inverted repeats of the Mu1 transposable element. Mol Gen Genet, 229 (1). pp. 17-26. ISSN 0026-8925 (Print)0026-8925 (Linking)

Zhao, Zuo-Yu, Weber, D. (August 1988) Analysis of Nondisjunction Induced by the R-X1 Deficiency During Microsporogenesis in Zea-Mays L. Genetics, 119 (4). pp. 975-980. ISSN 0016-6731

Zhao, Zuo-Yu, Weber, David F. (February 1989) Male Gametophyte Development in Monosomics of Maize. Genome, 32 (1). pp. 155-164. ISSN 0831-2796

Zhou, S., Wei, F., Nguyen, J., Bechner, M., Potamousis, K., Goldstein, S., Pape, L., Mehan, M. R., Churas, C., Pasternak, S., Forrest, D. K., Wise, R., Ware, D. H., Wing, R. A., Waterman, M. S., Livny, M., Schwartz, D. C. (November 2009) A single molecule scaffold for the maize genome. PLoS Genet, 5 (11). e1000711. ISSN 1553-7404 (Electronic)

Zhu, Chuanmei, Liu, Lei, Crowell, Olivia, Zhao, Hui, Brutnell, Thomas P, Jackson, David, Kellogg, Elizabeth A (2021) The CLV3 Homolog in Setaria viridis Selectively Controls Inflorescence Meristem Size. Frontiers in Plant Science, 12. p. 636749. ISSN 1664-462X