Items where Subject is "genes, structure and function"
- CSHL Subject List (1598)
- bioinformatics (1598)
- genomics and proteomics (1598)
- genetics & nucleic acid processing (1598)
- DNA, RNA structure, function, modification (1598)
- genes, structure and function (1598)
- alleles (28)
- gene amplification (24)
- gene expression (555)
- gene network (17)
- gene regulation (190)
- gene silencing (65)
- gene transfer (24)
- genes: types (579)
- loss of function (5)
- genes, structure and function (1598)
- DNA, RNA structure, function, modification (1598)
- genetics & nucleic acid processing (1598)
- genomics and proteomics (1598)
- bioinformatics (1598)
A
Aakula, Anna, Isomursu, Aleksi, Rupp, Christian, Erickson, Andrew, Gupta, Nikhil, Kauko, Otto, Shah, Pragya, Padzik, Artur, Pokharel, Yuba Raj, Kaur, Amanpreet, Li, Song-Ping, Trotman, Lloyd, Taimen, Pekka, Rannikko, Antti, Lammerding, Jan, Paatero, Ilkka, Mirtti, Tuomas, Ivaska, Johanna, Westermarck, Jukka (December 2022) PP2A methylesterase PME-1 suppresses anoikis and is associated with therapy relapse of PTEN-deficient prostate cancers. Molecular Oncology. ISSN 1574-7891
Abraham, J., Nasmyth, K. A., Strathern, J. N., Klar, A. J. S., Hicks, J. B. (1984) Regulation of mating-type information in yeast. Negative control requiring sequences both 5′ and 3′ to the regulated region. Journal of Molecular Biology, 176 (3). pp. 307-331. ISSN 00222836 (ISSN)
Agaram, N. P., Wong, G. C., Guo, T., Maki, R. G., Singer, S., Dematteo, R. P., Besmer, P., Antonescu, C. R. (October 2008) Novel V600E BRAF mutations in imatinib-naive and imatinib-resistant gastrointestinal stromal tumors. Genes Chromosomes Cancer, 47 (10). pp. 853-9. ISSN 1098-2264 (Electronic)1045-2257 (Linking)
Aguirre, A. J., Nowak, J. A., Camarda, N. D., Moffitt, R. A., Ghazani, A. A., Hazar-Rethinam, M., Raghavan, S., Kim, J., Brais, L. K., Ragon, D., Welch, M. W., Reilly, E., McCabe, D., Marini, L., Anderka, K., Helvie, K., Oliver, N., Babic, A., Da Silva, A., Nadres, B., Van Seventer, E. E., Shahzade, H. A., St Pierre, J. P., Burke, K. P., Clancy, T. E., Cleary, J. M., Doyle, L. A., Jajoo, K., McCleary, N. J., Meyerhardt, J. A., Murphy, J. E., Ng, K., Patel, A. K., Perez, K., Rosenthal, M. H., Rubinson, D. A., Ryou, M., Shapiro, G. I., Sicinska, E., Silverman, S. G., Nagy, R. J., Lanman, R. B., Knoerzer, D., Welsch, D. J., Yurgelun, M. B., Fuchs, C. S., Garraway, L. A., Getz, G., Hornick, J. L., Johnson, B. E., Kulke, M. H., Mayer, R. J., Miller, J. W., Shyn, P. B., Tuveson, D. A., Wagle, N., Yeh, J. J., Hahn, W. C., Corcoran, R. B., Carter, S. L., Wolpin, B. M. (June 2018) Real-time genomic characterization of advanced pancreatic cancer to enable precision medicine. Cancer Discov, 8 (9). pp. 1096-1111. ISSN 2159-8274
Aguirre-Chen, C., Hammell, C. M. (2014) Cell death machinery makes life more robust. Elife, 3. e05816. ISSN 2050-084X (Electronic)2050-084X (Linking)
Ahola, H., Stenlund, A., Moreno-Lopez, J., Pettersson, U. (May 1983) Sequences of bovine papillomavirus type 1 DNA--functional and evolutionary implications. Nucleic Acids Res, 11 (9). pp. 2639-50. ISSN 0305-1048 (Print)0305-1048 (Linking)
Albeanu, D. F., Provost, A. C., Agarwal, P., Soucy, E. R., Zak, J. D., Murthy, V. N. (November 2018) Olfactory marker protein (OMP) regulates formation and refinement of the olfactory glomerular map. Nat Commun, 9 (1). p. 5073. ISSN 2041-1723
Alexander, Katherine A, Coté, Allison, Nguyen, Son C, Zhang, Liguo, Gholamalamdari, Omid, Agudelo-Garcia, Paula, Lin-Shiao, Enrique, Tanim, KMA, Lim, Joan, Biddle, Nicolas, Dunagin, Margaret C, Good, Charly R, Mendoza, Mariel R, Little, Shawn C, Belmont, Andrew, Joyce, Eric F, Raj, Arjun, Berger, Shelley L (April 2021) p53 mediates target gene association with nuclear speckles for amplified RNA expression. Molecular Cell, 81 (8). 1666-1681.e6. ISSN 1097-2765
Alexander, Katherine A, García-García, María J (January 2019) Imprinted gene expression at the Dlk1-Dio3 cluster is controlled by both maternal and paternal IG-DMRs in a tissue-specific fashion. bioRxiv. (Submitted)
Allshire, R. C. (June 1990) Introduction of large linear minichromosomes into Schizosaccharomyces pombe by an improved transformation procedure. Proceedings of the National Academy of Sciences of the United States of America, 87 (11). pp. 4043-4047. ISSN 0027-8424
Alonge, M., Wang, X., Benoit, M., Soyk, S., Pereira, L., Zhang, L., Suresh, H., Ramakrishnan, S., Maumus, F., Ciren, D., Levy, Y., Harel, T. H., Shalev-Schlosser, G., Amsellem, Z., Razifard, H., Caicedo, A. L., Tieman, D. M., Klee, H., Kirsche, M., Aganezov, S., Ranallo-Benavidez, T. R., Lemmon, Z. H., Kim, J., Robitaille, G., Kramer, M., Goodwin, S., McCombie, W. R., Hutton, S., Van Eck, J., Gillis, J., Eshed, Y., Sedlazeck, F. J., van der Knaap, E., Schatz, M. C., Lippman, Z. B. (July 2020) Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell, 182 (1). 145-161.e23. ISSN 0092-8674 (Print)0092-8674
Andersen, J. N., Jansen, P. G., Echwald, S. M., Mortensen, O. H., Fukada, T., Del Vecchio, R., Tonks, N. K., Moller, N. P. (January 2004) A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage. FASEB J, 18 (1). pp. 8-30. ISSN 1530-6860 (Electronic)
Andersen, L. B., Ballester, R., Marchuk, D. A., Chang, E., Gutmann, D. H., Saulino, A. M., Camonis, J., Wigler, M. H., Collins, F. S. (January 1993) A conserved alternative splice in the von Recklinghausen neurofibromatosis (NF1) gene produces two neurofibromin isoforms, both of which have GTPase-activating protein activity. Molecular and Cellular Biology, 13 (1). pp. 487-495. ISSN 0270-7306
Arbour, KC, Manchado, E, Bott, MJ, Ahn, L, Tobi, Y, Ni, AA, Yu, HA, Shannon, A, Ladanyi, M, Perron, V, Ginsberg, MS, Johnson, A, Holodny, A, Kris, MG, Rudin, CM, Lito, P, Rosen, N, Lowe, S, Riely, GJ (January 2022) Phase 1 Clinical Trial of Trametinib and Ponatinib in Patients With NSCLC Harboring KRAS Mutations. JTO Clinical and Research Reports, 3 (1). p. 100256. ISSN 2666-3643 (In Press)
Arun, G., Diermeier, S. D., Spector, D. L. (February 2018) Therapeutic Targeting of Long Non-Coding RNAs in Cancer. Trends Mol Med, 24 (3). pp. 257-277. ISSN 1471-4914
Asiimwe, Rebecca, Alexander, Dobin (February 2024) STAR+WASP reduces reference bias in the allele-specific mapping of RNA-seq reads. bioRxiv. (Submitted)
Asp, M., Giacomello, S., Larsson, L., Wu, C., Furth, D., Qian, X., Wardell, E., Custodio, J., Reimegard, J., Salmen, F., Osterholm, C., Stahl, P. L., Sundstrom, E., Akesson, E., Bergmann, O., Bienko, M., Mansson-Broberg, A., Nilsson, M., Sylven, C., Lundeberg, J. (December 2019) A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart. Cell, 179 (7). 1647-1660.e19. ISSN 0092-8674
Attardi, L. D., Reczek, E. E., Cosmas, C., Demicco, E. G., McCurrach, M. E., Lowe, S. W., Jacks, T. (March 2000) PERP, an apoptosis-associated target of p53, is a novel member of the PMP-22/gas3 family. Genes & Development, 14 (6). pp. 704-718. ISSN 0890-9369
Atwal, G. S., Kirchhoff, T., Bond, E. E., Montagna, M., Menin, C., Bertorelle, R., Scaini, M. C., Bartel, F., Böhnke, A., Pempe, C., Gradhand, E., Hauptmann, S., Offit, K., Levine, A. J., Bond, G. L. (June 2009) Altered tumor formation and evolutionary selection of genetic variants in the human MDM4 oncogene. Proc Natl Acad Sci U S A, 106 (25). pp. 10236-10241. ISSN 1091-6490 (Electronic)0027-8424 (Linking)
Azumi, Y., Liu, D. H., Zhao, D. Z., Li, W. X., Wang, G. F., Hu, Y., Ma, H. (June 2002) Homolog interaction during meiotic prophase I in Arabidopsis requires the SOLO DANCERS gene encoding a novel cyclin-like protein. Embo Journal, 21 (12). pp. 3081-3095. ISSN 0261-4189
B
Bagrodia, S., Taylor, S. J., Jordon, K. A., Van Aelst, L., Cerione, R. A. (September 1998) A novel regulator of p21-activated kinases. Journal of Biological Chemistry, 273 (37). pp. 23633-23636. ISSN 0021-9258
Baker, S. J., Kerppola, T. K., Luk, D., Vandenberg, M. T., Marshak, D. R., Curran, T., Abate, C. (October 1992) Jun Is Phosphorylated by Several Protein-Kinases at the Same Sites That Are Modified in Serum-Stimulated Fibroblasts. Molecular and Cellular Biology, 12 (10). pp. 4694-4705. ISSN 0270-7306
Balasooriya, Gayan I, Spector, David L (October 2022) Allele-specific differential regulation of monoallelically expressed autosomal genes in the cardiac lineage. Nature Communications, 13 (1). p. 5984. ISSN 2041-1723
Balbín, M., Hannon, G. J., Pendás, A. M., Ferrando, A. A., Vizoso, F., Fueyo, A., López-Otín, C. (1996) Functional analysis of a p21(WAF1,CIP1,SDI1) mutant (Arg 94 → Trp) identified in a human breast carcinoma. Evidence that the mutation impairs the ability of p21 to inhibit cyclin-dependent kinases. Journal of Biological Chemistry, 271 (26). pp. 15782-15786. ISSN 00219258 (ISSN)
Ballester, R., Marchuk, D., Boguski, M., Saulino, A., Letcher, R., Wigler, M. H., Collins, F. (November 1990) The NF1 locus encodes a protein functionally related to mammalian GAP and yeast IRA proteins. Cell, 63 (4). pp. 851-9. ISSN 0092-8674
Ballester, R., Wigler, M. H. (1990) Isolation and Characterization of Genes That Regulate Ras Function in the Yeast Saccharomyces-Cerevisiae. Yeast, 6 (SPEC. ). S212.
Ballouz, S., Liu, J. Y., George, R. A., Bains, N., Liu, A., Oti, M., Gaeta, B., Fatkin, D., Wouters, M. A. (August 2013) Gentrepid V2.0: a web server for candidate disease gene prediction. BMC Bioinformatics, 14. ISSN 1471-2105
Ballouz, Sara, Mangala, Melissa M, Perry, Matthew D, Heitmann, Stewart, Gillis, Jesse A, Hill, Adam P, Vandenberg, Jamie I (October 2020) Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events. Cardiovascular Research. ISSN 0008-6363
Balogun, Onyinye, Davis, Melissa, Mehallow, Michelle, Robine, Nicolas, Winterkorn, Lara, Oschwald, Dayna, Zody, Michael, Aparicio, Samuel, Maniatis, Tom, Varmus, Harold, Sawyers, Charles, Tuveson, David (2023) Polyethnic-1000: A New York-based initiative to advance cancer genomics through recruitment of diverse racial & ethnic populations. In: AACR Conference on the Science of Cancer Health Disparities in Racial/Ethnic Minorities and the Medically Underserved.
Bardot, E. S., Valdes, V. J., Zhang, J., Perdigoto, C. N., Nicolis, S., Hearn, S. A., Silva, J. M., Ezhkova, E. (May 2013) Polycomb subunits Ezh1 and Ezh2 regulate the Merkel cell differentiation program in skin stem cells. Embo Journal, 32 (14). pp. 1990-2000. ISSN 02614189
Barnes, S., Jones, D., Belliveau, N., Sundaresh, S., Kinney, J., Phillips, R. (January 2014) Identification and Analysis of the Transcriptional Regulatory Networks Governing Mechanosensitive Channels in E. coli. Biophysical Journal, 106 (2; Sup). 487A-487A. ISSN 0006-34951542-0086
Barnes, S. L., Belliveau, N. M., Ireland, W. T., Kinney, J. B., Phillips, R. (February 2019) Mapping DNA sequence to transcription factor binding energy in vivo. PLoS Comput Biol, 15 (2). e1006226. ISSN 1553-734x
Barnes, Allison C, Rodríguez-Zapata, Fausto, Juárez-Núñez, Karla A, Gates, Daniel J, Janzen, Garrett M, Kur, Andi, Wang, Li, Jensen, Sarah E, Estévez-Palmas, Juan M, Crow, Taylor M, Kavi, Heli S, Pil, Hannah D, Stokes, Ruthie L, Knizner, Kevan T, Aguilar-Rangel, Maria R, Demesa-Arévalo, Edgar, Skopelitis, Tara, Pérez-Limón, Sergio, Stutts, Whitney L, Thompson, Peter, Chiu, Yu-Chun, Jackson, David, Muddiman, David C, Fiehn, Oliver, Runcie, Daniel, Buckler, Edward S, Ross-Ibarra, Jeffrey, Hufford, Matthew B, Sawers, Ruairidh JH, Rellán-Álvarez, Rubén (July 2022) An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time. Proceedings of the National Academy of Sciences of USA, 119 (27). e2100036119. ISSN 0027-8424
Barriga, Francisco M, Tsanov, Kaloyan M, Ho, Yu-Jui, Sohail, Noor, Zhang, Amy, Baslan, Timour, Wuest, Alexandra N, Del Priore, Isabella, Meškauskaitė, Brigita, Livshits, Geulah, Alonso-Curbelo, Direna, Simon, Janelle, Chaves-Perez, Almudena, Bar-Sagi, Dafna, Iacobuzio-Donahue, Christine A, Notta, Faiyaz, Chaligne, Ronan, Sharma, Roshan, Pe'er, Dana, Lowe, Scott W (November 2022) MACHETE identifies interferon-encompassing chromosome 9p21.3 deletions as mediators of immune evasion and metastasis. Nature Cancer, 3 (11). pp. 1367-1385. ISSN 2662-1347
Bartlett, M. E., Williams, S. K., Taylor, Z., DeBlasio, S., Goldshmidt, A., Hall, D. H., Schmidt, R. J., Jackson, D. P., Whipple, C. J. (November 2015) The Maize PI/GLO Ortholog Zmm16/sterile tassel silky ear1 Interacts with the Zygomorphy and Sex Determination Pathways in Flower Development. Plant Cell, 27 (11). pp. 3081-3098. ISSN 1532-298X (Electronic)1040-4651 (Linking)
Bastow, R., Mylne, J. S., Lister, C., Lippman, Z., Martienssen, R. A., Dean, C. (January 2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature, 427 (6970). pp. 164-7. ISSN 1476-4687 (Electronic)0028-0836 (Linking)
Batut, P. J., Dobin, A., Plessy, C., Carninci, P., Gingeras, T. R. (2013) High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res, 23 (1). pp. 169-180. ISSN 1549-5469 (Electronic)1088-9051 (Linking)
Baulcombe, D., Huttly, A., Martienssen, R. (1987) Hormonal and development control of gene expression in wheat. Biochem Soc Trans, 15 (1). pp. 9-11. ISSN 0300-5127
Baulcombe, D., Lazarus, C., Martienssen, R. (1984) Gibberellins and gene control in cereal aleurone cells. J Embryol Exp Morphol, 83 Sup. pp. 119-135. ISSN 0022-0752
Beausejour, C. M., Krtolica, A., Galimi, F., Narita, M., Lowe, S. W., Yaswen, P., Campisi, J. (August 2003) Reversal of human cellular senescence: roles of the p53 and p16 pathways. Embo Journal, 22 (16). pp. 4212-4222. ISSN 0261-4189
Belleau, Pascal, Deschênes, Astrid, Chambwe, Nyasha, Tuveson, David A, Krasnitz, Alexander (December 2022) Genetic ancestry inference from cancer-derived molecular data across genomic and transcriptomic platforms. Cancer Research. CAN-22. ISSN 0008-5472
Belling, John (July 1933) Crossing over and gene rearrangement in flowering plants. Genetics, 18 (4). pp. 388-413.
Belvin, M. P., Yin, J. C. (December 1997) Drosophila learning and memory: recent progress and new approaches. Bioessays, 19 (12). pp. 1083-9. ISSN 0265-9247 (Print)
Ben-Hur, V., Denichenko, P., Siegfried, Z., Maimon, A., Krainer, A., Davidson, B., Karni, R. (January 2013) S6K1 Alternative Splicing Modulates Its Oncogenic Activity and Regulates mTORC1. Cell Reports, 3 (1). pp. 103-115. ISSN 22111247
Benita, Y., Kikuchi, H., Smith, A. D., Zhang, M. Q., Chung, D. C., Xavier, R. J. (August 2009) An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. Nucleic Acids Res, 37 (14). 4587–4602.
Benoit, Matthias (January 2022) Hot 'n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize. The Plant cell, 34 (1). pp. 497-498. ISSN 1532-298X
Berger, A. H., Chen, M., Morotti, A., Janas, J. A., Niki, M., Bronson, R. T., Taylor, B. S., Ladanyi, M., Van Aelst, L., Politi, K., Varmus, H. E., Pandolfi, P. P. (2013) DOK2 inhibits EGFR-mutated lung adenocarcinoma. PLoS One, 8 (11). e79526. ISSN 1932-6203
Beukema, P., Cecil, K. L., Peterson, E., Mann, V. R., Matsushita, M., Takashima, Y., Navlakha, S., Barth, A. L. (June 2018) TrpM8-mediated somatosensation in mouse neocortex. J Comp Neurol, 526 (9). pp. 1444-1456. ISSN 0021-9967
Beyaz, Semir, Mana, Miyeko D, Yilmaz, Ömer H (April 2021) High-fat diet activates a PPAR-δ program to enhance intestinal stem cell function. Cell Stem Cell, 28 (4). pp. 598-599. ISSN 1934-5909
Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Ishikawa, Y., Zientek, K., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Rudek, M. A., Xu, L., Anders, N. M., Pal, R., Harrold, A. P., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Chatterjee, B., Bachinger, H. P., Barr, F. G., Liddle, J., Garcia, B. A., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E., Keller, C. (November 2018) The HDAC3-SMARCA4-miR-27a axis promotes expression of the PAX3:FOXO1 fusion oncogene in rhabdomyosarcoma. Sci Signal, 11 (557). ISSN 1945-0877
Bina, M., Wyss, P., Ren, W. H., Szpankowski, W., Thomas, E., Randhawa, R., Reddy, S., John, P. M., Pares-Matos, E. I., Stein, A., Xu, H., Lazarus, S. A. (December 2004) Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics, 84 (6). pp. 929-940. ISSN 0888-7543
Binns, M. M., Boursnell, M. E., Cavanagh, D., Pappin, D. J., Brown, T. D. (April 1985) Cloning and sequencing of the gene encoding the spike protein of the coronavirus IBV. J Gen Virol, 66 ( P. pp. 719-26. ISSN 0022-1317 (Print)0022-1317 (Linking)
Birchmeier, C., Young, D., Wigler, M. H. (June 1986) Characterization of two new human oncogenes. Cold Spring Harbor Symposia on Quantitative Biology, 51 (2). pp. 993-1000. ISSN 00917451 (ISSN)
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P., Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Siepel, A. C. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447 (7146). pp. 799-816. ISSN 00280836 (ISSN)
Boddu, J., Jiang, C., Sangar, V., Olson, T., Peterson, T., Chopra, S. (January 2006) Comparative structural and functional characterization of sorghum and maize duplications containing orthologous Myb transcription regulators of 3-deoxyflavonoid biosynthesis. Plant Molecular Biology, 60 (2). pp. 185-199. ISSN 01674412
Boettner, B., Van Aelst, L. (August 2002) The RASputin effect. Genes & Development, 16 (16). pp. 2033-2038. ISSN 0890-9369
Boguski, M. S., Murray, A. W., Powers, S. (April 1992) Novel repetitive sequence motifs in the alpha and beta subunits of prenyl-protein transferases and homology of the alpha subunit to the MAD2 gene product of yeast. The New Biologist, 4 (4). pp. 408-11. ISSN 1043-4674 (Print)1043-4674
Bommert, P., Nagasawa, N. S., Jackson, D. (March 2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036
Botcheva, K., McCorkle, S. R., McCombie, W. R., Dunn, J. J., Anderson, C. W. (December 2011) Distinct p53 genomic binding patterns in normal and cancer-derived human cells. Cell Cycle, 10 (24). pp. 4237-4249. ISSN 1538-4101
Bott, A. J., Shen, J., Tonelli, C., Zhan, L., Sivaram, N., Jiang, Y. P., Yu, X., Bhatt, V., Chiles, E., Zhong, H., Maimouni, S., Dai, W., Velasquez, S., Pan, J. A., Muthalagu, N., Morton, J., Anthony, T. G., Feng, H., Lamers, W. H., Murphy, D. J., Guo, J. Y., Jin, J., Crawford, H. C., Zhang, L., White, E., Lin, R. Z., Su, X., Tuveson, D. A., Zong, W. X. (October 2019) Glutamine Anabolism Plays a Critical Role in Pancreatic Cancer by Coupling Carbon and Nitrogen Metabolism. Cell Rep, 29 (5). 1287-1298.e6.
Brenner, E. D., Stevenson, D. W., McCombie, R. W., Katari, M. S., Rudd, S. A., Mayer, K. F., Palenchar, P. M., Runko, S. J., Twigg, R. W., Dai, G., Martienssen, R. A., Benfey, P. N., Coruzzi, G. M. (2003) Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology, 4 (12). R78. ISSN 1474-7596
Brina, Daniela, Ponzoni, Adele, Troiani, Martina, Calì, Bianca, Pasquini, Emiliano, Attanasio, Giuseppe, Mosole, Simone, Mirenda, Michela, D'Ambrosio, Mariantonietta, Colucci, Manuel, Guccini, Ilaria, Revandkar, Ajinkya, Alajati, Abdullah, Tebaldi, Toma, Donzel, Deborah, Lauria, Fabio, Parhizgari, Nahjme, Valdata, Aurora, Maddalena, Martino, Calcinotto, Arianna, Bolis, Marco, Rinaldi, Andrea, Barry, Simon, Rüschoff, Jan Hendrik, Sabbadin, Marianna, Sumanasuriya, Semini, Crespo, Mateus, Sharp, Adam, Yuan, Wei, Grinu, Mathew, Boyle, Alexandra, Miller, Cynthia, Trotman, Lloyd, Delaleu, Nicolas, Fassan, Matteo, Moch, Holger, Viero, Gabriella, de Bono, Johann, Alimonti, Andrea (August 2023) The Akt/mTOR and MNK/eIF4E pathways rewire the prostate cancer translatome to secrete HGF, SPP1 and BGN and recruit suppressive myeloid cells. Nature Cancer, 4 (8). pp. 1102-1121. ISSN 2662-1347 (Public Dataset)
Broach, J. R., Strathern, J. N., Hicks, J. B. (1979) Transformation in yeast: Development of a hybrid cloning vector and isolation of the CAN1 gene. Gene, 8 (1). pp. 121-133. ISSN 03781119 (ISSN)
Broek, D., Toda, T., Michaeli, T., Levin, L., Birchmeier, C., Zoller, M., Powers, S., Wigler, M. H. (March 1987) The S. cerevisiae CDC25 gene product regulates the RAS/adenylate cyclase pathway. Cell, 48 (5). pp. 789-800.
Brooks, C., Nekrasov, V., Lippman, Z., Van Eck, J. (September 2014) Efficient gene editing in tomato in the first generation using the CRISPR/Cas9 system. Plant Physiology, 166 (3). pp. 1292-1297. ISSN 0032-0889
Brooks, L., Strable, J., Zhang, X., Ohtsu, K., Zhou, R., Sarkar, A., Hargreaves, S., Elshire, R. J., Eudy, D., Pawlowska, T., Ware, D. H., Janick-Buckner, D., Buckner, B., Timmermans, M. C. P., Schnable, P. S., Nettleton, D., Scanlon, M. J. (May 2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5 (5). e1000476.
Brown, P., Cervenáková, L., Goldfarb, L. G., McCombie, W. R., Rubenstein, R., Will, R. G., Pocchiari, M., Martinez-Lage, J. F., Scalici, C., Masullo, C., Graupera, G., Ligan, J., Gajdusek, D. C. (1994) Iatrogenic Creutzfeldt-Jakob disease: An example of the interplay between ancient genes and modern medicine. Neurology, 44 (2). pp. 291-293. ISSN 00283878 (ISSN)
Brown, P., Goldfarb, L. G., McCombie, W. R., Nieto, A., Squillacote, D., Sheremata, W., Little, B. W., Godec, M. S., Gibbs Jr, C. J., Gajdusek, D. C. (1992) Atypical Creutzfeldt-Jakob disease in an American family with an insert mutation in the PRNP amyloid precursor gene. Neurology, 42 (2). pp. 422-427. ISSN 00283878 (ISSN)
Bruarolas, J., Chandrasekaran, C., Gordon, J. I., Beach, D., Jacks, T., Hannon, G. J. (1995) Radiation-induced cell cycle arrest compromised by p21 deficiency. Nature, 377 (6549). pp. 552-557. ISSN 00280836 (ISSN)
Bruenn, J. (1973) Mutant of Escherichia-Coli with a New, Highly Efficient Promoter for Lactose Operon. Proceedings of the National Academy of Sciences of the United States of America, 70 (12). pp. 3693-3697.
Brunner, D., Kabitzke, P., He, D., Cox, K., Thiede, L., Hanania, T., Sabath, E., Alexandrov, V., Saxe, M., Peles, E., Mills, A., Spooren, W., Ghosh, A., Feliciano, P., Benedetti, M., Luo Clayton, A., Biemans, B. (August 2015) Comprehensive Analysis of the 16p11.2 Deletion and Null Cntnap2 Mouse Models of Autism Spectrum Disorder. PLoS One, 10 (8). e0134572. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Brägelmann, Johannes, Lorenz, Carina, Borchmann, Sven, Nishii, Kazuya, Wegner, Julia, Meder, Lydia, Ostendorp, Jenny, Ast, David F, Heimsoeth, Alena, Nakasuka, Takamasa, Hirabae, Atsuko, Okawa, Sachi, Dammert, Marcel A, Plenker, Dennis, Klein, Sebastian, Lohneis, Philipp, Gu, Jianing, Godfrey, Laura K, Forster, Jan, Trajkovic-Arsic, Marija, Zillinger, Thomas, Haarmann, Mareike, Quaas, Alexander, Lennartz, Stefanie, Schmiel, Marcel, D'Rozario, Joshua, Thomas, Emily S, Li, Henry, Schmitt, Clemens A, George, Julie, Thomas, Roman K, von Karstedt, Silvia, Hartmann, Gunther, Büttner, Reinhard, Ullrich, Roland T, Siveke, Jens T, Ohashi, Kadoaki, Schlee, Martin, Sos, Martin L (September 2021) MAPK-pathway inhibition mediates inflammatory reprogramming and sensitizes tumors to targeted activation of innate immunity sensor RIG-I. Nature Communications, 12 (1). p. 5505. ISSN 2041-1723
Buckler, E. S., Holland, J. B., Bradbury, P. J., Acharya, C. B., Brown, P. J., Browne, C., Ersoz, E., Flint-Garcia, S., Garcia, A., Glaubitz, J. C., Goodman, M. M., Harjes, C., Guill, K., Kroon, D. E., Larsson, S., Lepak, N. K., Li, H., Mitchell, S. E., Pressoir, G., Peiffer, J. A., Rosas, M. O., Rocheford, T. R., Romay, M. C., Romero, S., Salvo, S., Sanchez Villeda, H., da Silva, H. S., Sun, Q., Tian, F., Upadyayula, N., Ware, D. H., Yates, H., Yu, J., Zhang, Z., Kresovich, S., McMullen, M. D. (August 2009) The genetic architecture of maize flowering time. Science, 325 (5941). pp. 714-8. ISSN 1095-9203 (Electronic)
Budziszewski, G. J., Lewis, S. P., Glover, L. W., Reineke, J., Jones, G., Ziemnik, L. S., Lonowski, J., Nyfeler, B., Aux, G., Zhou, Q., McElver, J., Patton, D. A., Martienssen, R., Grossniklaus, U., Ma, H., Law, M., Levin, J. Z. (December 2001) Arabidopsis genes essential for seedling viability: Isolation of Insertional mutants and molecular cloning. Genetics, 159 (4). pp. 1765-1778. ISSN 0016-6731
Burgess, D. J. (2007) RNAi Genetic Screens for Chemotherapy Response Modifier Genes. PhD thesis, Cold Spring Harbor Laboratory.
Byrne, M. E., Barley, R., Curtis, M., Arroyo, J. M., Dunham, M., Hudson, A., Martienssen, R. A. (December 2000) Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature, 408 (6815). pp. 967-971. ISSN 0028-0836
Byrne, M. E., Simorowski, J., Martienssen, R. A. (April 2002) ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development, 129 (8). pp. 1957-1965. ISSN 0950-1991
Bywater, M. J., Poortinga, G., Sanij, E., Hein, N., Peck, A., Cullinane, C., Wall, M., Cluse, L., Drygin, D., Anderes, K., Huser, N., Proffitt, C., Bliesath, J., Haddach, M., Schwaebe, M. K., Ryckman, D. M., Rice, W. G, Schmitt, C., Lowe, Scott W, Johnstone, R. W., Pearson, R. B., McArthur, G. A., Hannan, R. D. (July 2012) Inhibition of RNA Polymerase I as a Therapeutic Strategy to Promote Cancer-Specific Activation of p53. Cancer Cell, 22 (1). pp. 51-65. ISSN 1535-6108
C
Cai, C. L., Rajaram, M., Zhou, X., Liu, Q., Marchica, J., Li, J. Y., Powers, R. S. (May 2012) Activation of multiple cancer pathways and tumor maintenance function of the 3q amplified oncogene FNDC3B. Cell Cycle, 11 (9). pp. 1773-1781. ISSN 1538-4101
Cannon, S. B., McCombie, W. R., Sato, S., Tabata, S., Denny, R., Palmer, L., Katari, M., Young, N. D., Stacey, G. (December 2003) Evolution and microsynteny of the apyrase gene family in three legume genomes. Molecular Genetics and Genomics, 270 (4). pp. 347-361. ISSN 1617-4615
Cano, Alejandro V, Rozhoňová, Hana, Stoltzfus, Arlin, McCandlish, David M, Payne, Joshua L (February 2022) Mutation bias shapes the spectrum of adaptive substitutions. Proceedings of the National Academy of Sciences of USA, 119 (7). e2119720119-e2119720119. ISSN 0027-8424
Cao, Zhendong, Budinich, Krista A, Huang, Hua, Ren, Diqiu, Lu, Bin, Zhang, Zhen, Chen, Qingzhou, Zhou, Yeqiao, Huang, Yu-Han, Alikarami, Fatemeh, Kingsley, Molly C, Lenard, Alexandra K, Wakabayashi, Aoi, Khandros, Eugene, Bailis, Will, Qi, Jun, Carroll, Martin P, Blobel, Gerd A, Faryabi, Robert B, Bernt, Kathrin M, Berger, Shelley L, Shi, Junwei (August 2021) ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency. Molecular Cell. ISSN 1097-2765
Carl, S., Daniels, R., Iafrate, A. J., Easterbrook, P., Greenough, T. C., Skowronski, J., Kirchhoff, F. (January 2000) Partial "repair" of defective NEF genes in a long-term nonprogressor with human immunodeficiency virus type 1 infection. Journal of Infectious Diseases, 181 (1). pp. 132-140. ISSN 0022-1899
Carl, S., Greenough, T. C., Krumbiegel, M., Greenberg, M., Skowronski, J., Sullivan, J. L., Kirchhoff, F. (April 2001) Modulation of different human immunodeficiency virus type 1 Nef functions during progression to AIDS. Journal of Virology, 75 (8). pp. 3657-3665. ISSN 0022-538X
Carnero, A., Hudson, J. D., Hannon, G. J., Beach, D. H. (2000) Loss-of-function genetics in mammalian cells: The p53 tumor suppressor model. Nucleic Acids Research, 28 (11). pp. 2234-2241. ISSN 03051048 (ISSN)
Carter, J. A., Preall, J. B., Atwal, G. S. (October 2019) Bayesian Inference of Allelic Inclusion Rates in the Human T Cell Receptor Repertoire. Cell Syst, 9 (5). pp. 475-482. ISSN 2405-4712 (Public Dataset)
Carvalho, F. I., Johns, C., Gillespie, M. E. (May 2012) Gene expression analysis: Teaching Students to do 30,000 Experiments at once with Microarray. Biochemistry and Molecular Biology Education, 40 (3). pp. 181-190. ISSN 1470-8175
Catizone, Allison N, Good, Charly Ryan, Alexander, Katherine A, Berger, Shelley L, Sammons, Morgan A (April 2019) Comparison of genotoxic versus nongenotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks. Cell Cycle, 18 (8). pp. 809-823. ISSN 1538-4101
Cecchini, Katharine, Biasini, Adriano, Yu, Tianxiong, Säflund, Martin, Mou, Haiwei, Arif, Amena, Eghbali, Atiyeh, Colpan, Cansu, Gainetdinov, Ildar, de Rooij, Dirk G, Weng, Zhiping, Zamore, Phillip, Ozata, Deniz M (November 2022) The transcription factor TCFL5 responds to A MYB to elaborate the male meiotic program in mice. Reproduction. REP-22. ISSN 1470-1626
Chakraborty, A. A., Tansey, W. P. (January 2009) Adenoviral E1A Function through Myc. Cancer Res, 69 (1). pp. 6-9.
Charles, C. H., Sun, H., Lau, L. F., Tonks, N. K. (June 1993) The growth factor-inducible immediate-early gene 3CH134 encodes a protein-tyrosine-phosphatase. Proceedings of the National Academy of Sciences of the United States of America, 90 (11). pp. 5292-5296. ISSN 0027-8424
Chatterjee, S., Seifried, L., Feigin, M. E., Gibbons, D. L., Scuoppo, C., Lin, W., Rizvi, Z. H., Lind, E., Dissanayake, D., Kurie, J., Ohashi, P., Muthuswamy, S. K. (April 2012) Dysregulation of Cell Polarity Proteins Synergize with Oncogenes or the Microenvironment to Induce Invasive Behavior in Epithelial Cells. PLoS ONE, 7 (4). ISSN 1932-6203
Cheadle, L., Tzeng, C. P., Kalish, B. T., Harmin, D. A., Rivera, S., Ling, E., Nagy, M. A., Hrvatin, S., Hu, L., Stroud, H., Burkly, L. C., Chen, C., Greenberg, M. E. (August 2018) Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement. Neuron, 99 (3). 525-539.e10. ISSN 0896-6273 (Print)0896-6273
Chen, H. H., Luche, R., Wei, B., Tonks, N. K. (October 2004) Characterization of two distinct dual specificity phosphatases encoded in alternative open reading frames of a single gene located on human chromosome 10q22.2. J Biol Chem, 279 (40). pp. 41404-13. ISSN 0021-9258 (Print)
Chen, X., Sun, Y. C., Zhan, H., Kebschull, J. M., Fischer, S., Matho, K., Huang, Z. J., Gillis, J., Zador, A. M. (October 2019) High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing. Cell, 179 (3). 772-786.e19. ISSN 0092-8674 (Public Dataset)
Chen, Z., Trotman, L. C., Shaffer, D., Lin, H. K., Dotan, Z. A., Niki, M., Koutcher, J. A., Scher, H. I., Ludwig, T., Gerald, W., Cordon-Cardo, C., Pandolfi, P. P. (August 2005) Crucial role of p53-dependent cellular senescence in suppression of Pten-deficient tumorigenesis. Nature, 436 (7051). pp. 725-30. ISSN 1476-4687 (Electronic)0028-0836 (Linking)
Cheng, D., Tuveson, D. (January 2018) Kras in Organoids. Cold Spring Harb Perspect Med, 8 (10). ISSN 2157-1422
Cheng, H., Gottlieb, L., Marchi, E., Kleyner, R., Bhardwaj, P., Rope, A. F., Rosenheck, S., Moutton, S., Philippe, C., Eyaid, W., Alkuraya, F. S., Toribio, J., Mena, R., Prada, C. E., Stessman, H., Bernier, R., Wermuth, M., Kauffmann, B., Blaumeiser, B., Kooy, R. F., Baralle, D., Mancini, G. M. S., Conway, S. J., Xia, F., Chen, Z., Meng, L., Mihajlovic, L., Marmorstein, R., Lyon, G. J. (May 2019) Phenotypic and biochemical analysis of an international cohort of individuals with variants in NAA10 and NAA15. Hum Mol Genet, 28 (17). pp. 2900-2919. ISSN 0964-6906
Cheng, Y. S., Zipser, D., Cheng, C. Y., Rolseth, S. J. (October 1979) Isolation and characterization of mutations in the structural gene for protease III (ptr). J Bacteriol, 140 (1). pp. 125-30. ISSN 0021-9193 (Print)0021-9193 (Linking)
Cherepinsky, V., Feng, J. W., Rejali, M., Mishra, B. (August 2003) Shrinkage-based similarity metric for cluster analysis of microarray data. Proceedings of the National Academy of Sciences of the United States of America, 100 (17). pp. 9668-9673. ISSN 0027-8424
Chicas, A., Kapoor, A., Wang, X. W., Aksoy, O., Evertts, A. G., Zhang, M. Q., Garcia, B. A., Bernstein, E., Lowe, S. W. (June 2012) H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence. Proceedings of the National Academy of Sciences of the United States of America, 109 (23). pp. 8971-8976. ISSN 0027-8424
Choi, K., Zhao, X., Tock, A. J., Lambing, C., Underwood, C. J., Hardcastle, T. J., Serra, H., Kim, J., Cho, H. S., Kim, J., Ziolkowski, P. A., Yelina, N. E., Hwang, I., Martienssen, R. A., Henderson, I. R. (April 2018) Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions. Genome Res, 28 (4). pp. 532-546. ISSN 1088-9051
Choi, S. C., Rasmussen, M. D., Hubisz, M. J., Gronau, I., Stanhope, M. J., Siepel, A. (November 2012) Replacing and additive horizontal gene transfer in Streptococcus. Mol Biol Evol, 29 (11). pp. 3309-20. ISSN 0737-4038
Choi, Charlotte P, Tay, Rebecca J, Starostik, Margaret R, Feng, Suhua, Moresco, James J, Montgomery, Brooke E, Xu, Emily, Hammonds, Maya A, Schatz, Michael C, Montgomery, Taiowa A, Yates, John R, Jacobsen, Steven E, Kim, John K (February 2021) SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. eLife, 10. pp. 1-35. ISSN 2050-084X
Choisne, N., Demange, N., Orjeda, G., Samain, S., D'Hont, A., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., Scarpelli, C., Weissenbach, J., Salanoubat, M., Quetier, F., Singh, N. K., Mohapatra, T., Sharma, T. R., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S. K., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Dixit, R., Singh, H., Swain, S. C., Pal, S., Ragiba, M., Singh, P. K., Singhal, V., Mendiratta, S. D., Batra, K., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Vydianathan, R., Vij, S., Kapur, A., Khurana, P., Sharma, S., Khurana, J. P., Tyagi, A. K., Yuan, Q. P., Ouyang, S., Liu, J., Zhu, W., Wang, A. H., Lin, H. N., Hamilton, J., Haas, B., Wortman, J., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, B., Jin, S. H., Johri, S., Reardon, M., Vuong, H., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., de Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Buell, C. R., Yu, Y., Rambo, T., Currie, J., Collura, K., Kim, H. R., Stum, D., Wang, W. M., Kudrna, D., Mueller, C., Wing, R. A., Kramer, M., Spiegel, L., Nascimento, L., Preston, R., Zutavern, T., Palmer, L., O'Shaughnessy, A., McCombie, W. R. (September 2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biology, 3. ISSN 1741-7007
Chou, S. T., Khandros, E., Bailey, L. C., Nichols, K. E., Vakoc, C. R., Yao, Y., Huang, Z., Crispino, J. D., Hardison, R. C., Blobel, G. A., Weiss, M. J. (July 2009) Graded repression of PU.1/Sfpi1 gene transcription by GATA factors regulates hematopoietic cell fate. Blood, 114 (5). pp. 983-994.
Christensen, S. A., Nemchenko, A., Borrego, E., Murray, I., Sobhy, I. S., Bosak, L., Deblasio, S., Erb, M., Robert, C. A., Vaughn, K. A., Herrfurth, C., Tumlinson, J., Feussner, I., Jackson, D., Turlings, T. C., Engelberth, J., Nansen, C., Meeley, R., Kolomiets, M. V. (April 2013) The maize lipoxygenase, ZmLOX10, mediates green leaf volatile, jasmonate and herbivore-induced plant volatile production for defense against insect attack. Plant Journal, 74 (1). pp. 59-73. ISSN 09607412 (ISSN)
Chung, S. B., Gumienny, T. L., Hengartner, M. O., Driscoll, M. (December 2000) A common set of engulfment genes mediates removal of both apoptotic and necrotic cell corpses in C-elegans. Nature Cell Biology, 2 (12). pp. 931-937. ISSN 1465-7392
Ciren, Danielle, Zebell, Sophia, Lippman, Zachary B (December 2023) Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator. bioRxiv. (Submitted)
Cisse, Y. M., Borniger, J. C., Lemanski, E., Walker, W. H., Nelson, R. J. (January 2018) Time-Restricted Feeding Alters the Innate Immune Response to Bacterial Endotoxin. J Immunol, 200 (2). pp. 681-687. ISSN 1550-6606 (Electronic)0022-1767 (Linking)
Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W., Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. C. L., Gardiner, A., Garfield, D. A., Garvin, B. E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A. J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E. A., Haerty, W., Hahn, M. W., Halligan, D. L., Halpern, A. L., Halter, G. M., Han, M. V., Heger, A., Hillier, L., Hinrichs, A. S., Holmes, I., Hoskins, R. A., Hubisz, M. J., Hultmark, D., Huntley, M. A., Jaffe, D. B., Jagadeeshan, S. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450 (7167). pp. 203-218. ISSN 00280836 (ISSN)
Cleary, S. P., Jeck, W. R., Zhao, X. B., Chen, K., Selitsky, S. R., Savich, G. L., Tan, T. X., Wu, M. C., Getz, G., Lawrence, M. S., Parker, J. S., Li, J. Y., Powers, S., Kim, H., Fischer, S., Guindi, M., Ghanekar, A., Chiang, D. Y. (November 2013) Identification of Driver Genes in Hepatocellular Carcinoma by Exome Sequencing. Hepatology, 58 (5). pp. 1693-1702. ISSN 0270-9139
Cleary, S. P., Jeck, W. R., Zhao, X. B., Selitsky, S. R., Savich, G. L., Tan, T. X., Wu, M. C., Getz, G., Lawrence, M. S., Parker, J. S., Li, J. Y., Powers, S., Kim, H., Fischer, S. E., Guindi, M., Ghanekar, A., Chiang, D. Y. (April 2013) Identification of driver genes in hepatocellular carcinoma by exome sequencing. Cancer Research, 73 (8 (Sup). p. 4598. ISSN 0008-5472
Cline, H. (December 2003) Sperry and Hebb: oil and vinegar? Trends in Neurosciences, 26 (12). pp. 655-661. ISSN 0166-2236
Conklin, D. S. (October 2003) RNA-interference-based silencing of mammalian gene expression. Chembiochem, 4 (10). pp. 1033-1039. ISSN 1439-4227
Conn, A., Chandrasekhar, A., Rongen, M. V., Leyser, O., Chory, J., Navlakha, S. (September 2019) Network trade-offs and homeostasis in Arabidopsis shoot architectures. PLoS Comput Biol, 15 (9). e1007325. ISSN 1553-734x (Public Dataset)
Cottarel, G. (September 1995) The Saccharomyces cerevisiae HIS3 and LYS2 genes complement the Schizosaccharomyces pombe his5-303 and lys1-131 mutations, respectively: new selectable markers and new multi-purpose multicopy shuttle vectors, pSP3 and pSP4. Curr Genet, 28 (4). pp. 380-3. ISSN 0172-8083 (Print)
Cranston, K. A., Hurwitz, B. L., Ware, D. H., Stein, L. D., Wing, R. A. (October 2009) Species Trees from Highly Incongruent Gene Trees in Rice. Systematic Biology, 58 (5). pp. 489-500. ISSN 1063-5157
Crow, M., Lim, N., Ballouz, S., Pavlidis, P., Gillis, J. (March 2019) Predictability of human differential gene expression. Proc Natl Acad Sci U S A. ISSN 0027-8424
D
D'Andrea, V., Nowak, D., Watrud, K., Ambrico, A., Casanova-Salas, I., Trotman, L. (July 2018) The Phlpp2 phosphatase protects Myc and is a target for the prevention of prostate cancer metastasis. Cancer Research, 78 (13 S). Abstract: 1097 . ISSN 0008-5472
Dachet, Fabien, Brown, James B, Valyi-Nagy, Tibor, Narayan, Kunwar D, Serafini, Anna, Boley, Nathan, Gingeras, Thomas R, Celniker, Susan E, Mohapatra, Gayatry, Loeb, Jeffrey A (March 2021) Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports, 11 (1). p. 6078. ISSN 2045-2322
Dalton, J. E., Fear, J. M., Knott, S., Baker, B. S., McIntyre, L. M., Arbeitman, M. N. (September 2013) Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains. BMC Genomics, 14. ISSN 1471-2164 (Public Dataset)
Dampanaboina, L., Jiao, Y., Chen, J., Gladman, N., Chopra, R., Burow, G., Hayes, C., Christensen, S. A., Burke, J., Ware, D., Xin, Z. (October 2019) Sorghum MSD3 Encodes an omega-3 Fatty Acid Desaturase that Increases Grain Number by Reducing Jasmonic Acid Levels. Int J Mol Sci, 20 (21). ISSN 1422-0067 (Public Dataset)
Dancsok, A. R., Setsu, N., Gao, D., Blay, J. Y., Thomas, D., Maki, R. G., Nielsen, T. O., Demicco, E. G. (July 2019) Expression of lymphocyte immunoregulatory biomarkers in bone and soft-tissue sarcomas. Mod Pathol, 32 (12). pp. 1662-1785. ISSN 0893-3952
Darrow, S. M., Hirschtritt, M. E., Davis, L. K., Illmann, C., Osiecki, L., Grados, M., Sandor, P., Dion, Y., King, R., Pauls, D., Budman, C. L., Cath, D. C., Greenberg, E., Lyon, G. J., Yu, D., McGrath, L. M., McMahon, W. M., Lee, P. C., Delucchi, K. L., Scharf, J. M., Mathews, C. A. (April 2017) Identification of Two Heritable Cross-Disorder Endophenotypes for Tourette Syndrome. Am J Psychiatry, 174 (4). pp. 387-396. ISSN 1535-7228 (Electronic)0002-953X (Linking)
Das, P. P., Shao, Z., Beyaz, S., Apostolou, E., Pinello, L., Angeles, A. L., O'Brien, K., Atsma, J. M., Fujiwara, Y., Nguyen, M., Ljuboja, D., Guo, G., Woo, A., Yuan, G. C., Onder, T., Daley, G., Hochedlinger, K., Kim, J., Orkin, S. H. (January 2014) Distinct and combinatorial functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in mouse embryonic stem cell identity. Mol Cell, 53 (1). pp. 32-48. ISSN 1097-4164 (Electronic)1097-2765 (Linking)
Das, S., Anczuków, O., Akerman, M., Krainer, A. R (2012) Oncogenic Splicing Factor SRSF1 Is a Critical Transcriptional Target of MYC. Cell Reports, 1 (2). pp. 110-117. ISSN 2211-1247
Das, S., Fregoso, O. I., Krainer, A. R. (2013) A new path to oncogene-induced senescence: At the cross-roads of splicing and translation. Cell Cycle, 12 (10). ISSN 1551-4005 (Electronic)1551-4005 (Linking)
DeZazzo, J., Tully, T. (May 1995) Dissection of memory formation: from behavioral pharmacology to molecular genetics. Trends Neurosci, 18 (5). pp. 212-8. ISSN 0166-2236 (Print)
Degenhardt, Y. Y., Wooster, R., McCombie, R. W., Lucito, R., Powers, S. (February 2008) High-content analysis of cancer genome DNA alterations. Current Opinion in Genetics & Development, 18 (1). pp. 68-72.
Degroat, Thomas J, Wiersielis, Kimberly, Denney, Katherine, Kodali, Sowmya, Daisey, Sierra, Tollkuhn, Jessica, Samuels, Benjamin A, Roepke, Troy A (December 2023) Chronic stress and its effects on behavior, RNA expression of the bed nucleus of the stria terminalis, and the M-current of NPY neurons. Psychoneuroendocrinology, 161. p. 106920. ISSN 0306-4530
Degtyareva, N. P., Greenwell, P., Hofmann, E. R., Hengartner, M. O., Zhang, L., Culotti, J. G., Petes, T. D. (February 2002) Caenorhabditis elegans DNA mismatch repair gene msh-2 is required for microsatellite stability and maintenance of genome integrity. Proceedings of the National Academy of Sciences of the United States of America, 99 (4). pp. 2158-2163. ISSN 0027-8424
Dellaporta, S. L., Chomet, P. S., Mottinger, J. P., Wood, J. A., Yu, S. M., Hicks, J. B. (1984) Endogenous transposable elements associated with virus infection in maize. Cold Spring Harbor Symposia on Quantitative Biology, 49. pp. 321-328. ISSN 00917451 (ISSN)
Demerec, Milislav (April 1931) Behaviour of two mutable genes of Delphinium ajacis. Journal of Genetics, 24 (2). pp. 179-193.
Demerec, Milislav (November 1941) Cold Spring Harbor Symposium on genes and chromosomes. The Journal of Heredity, 32 (11). pp. 391-392.
Demerec, Milislav (May 1935) Relative importance of various genes to the organism (Abstract). Science, 81 (2105). p. 420.
Demerec, Milislav (January 1935) Role of genes in a cell (Abstract). The American Naturalist , 69 (720). pp. 61-62.
Demerec, Milislav (March 1935) Role of genes in evolution. The American Naturalist, 69 (721). pp. 125-138.
Demerec, Milislav (1956) Structure and arrangement of gene loci. Cytologia. p. 20.
Demerec, Milislav (July 1957) Structure and arrangement of gene loci. Cytologia, Supple (Procee). pp. 20-31.
Demerec, Milislav (July 1935) Unstable genes. Botanical Review, 1. pp. 233-248.
Demerec, Milislav (January 1955) What is a gene?-twenty years later. The American Naturalist, 89 (844). pp. 5-20.
Demerec, Milislav (1962) The fine structure of the gene. In: The Molecular Control of Cellular Activity. McGraw-Hill, New York, pp. 169-179.
Demerec, Milislav (1941) The nature of the gene. In: "Cytology, genetics, and evolution". University of Pennsylvania Press, Philadelphia.
Demerec, Milislav, Kaufmann, Berwind Petersen (1940) Drosophila: guide for introductory studies of genetics and cytology. Carnegie Institution of Washington, Washington, D.C..
Demerec, Milislav, Kaufmann, Berwind Petersen, Fano, Ugo, Sansome, Eva Richardson, Gay, Helen (December 1943) The gene. Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 42, 1942-1943. pp. 139-147.
Demerec, Milislav, Kaufmann, Berwind Petersen, Fano, Ugo, Sutton, Eileen, Sansome, Eva Richardson (December 1942) The gene. Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 41, 1941-1942. pp. 190-199.
Demerec, Milislav, Kaufmann, Berwind Petersen, Sutton, Eileen (January 1942) Genetic effects produced by neutrons in Drosophila melanogaster. Genetics, 27 (1). p. 140.
Demerec, Milislav, Kaufmann, Berwind Petersen, Sutton, Eileen, Hinton, O. T. (December 1940) The gene. Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 39, 1939-1940. pp. 211-217.
Demerec, Milislav, Kaufmann, Berwind Petersen, Sutton, Eileen, Hinton, O. T. (December 1940) The gene. Project Report. Carnegie Institution of Washington, Washington, D.C..
Demerec, Milislav, Latarjet, Raymond, Luria, Salvador Edward, Oakberg, Eugene Franklin, Witkin, Evelyn Maisel (1946) The gene. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 45, 1945-1946. Carnegie Institution of Washington, Washington, D.C., pp. 143-157.
Demerec, Milislav, Luria, Salvador Edward (December 1945) The gene. Project Report. Carnegie Institution of Washington, Washington, D.C..
Demerec, Milislav, Wallace, Bruce, Witkin, Evelyn Maisel (1948) The gene. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 47, 1947-1948. Carnegie Institution of Washington, Washington, D.C., pp. 169-176.
Demerec, Milislav, Wallace, Bruce, Witkin, Evelyn Maisel, Bertani, Giuseppe (1949) The gene. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 48, 1948-1949. Carnegie Institution of Washington, Washington, D.C., pp. 154-166.
Demerec, Milislav, Witkin, Evelyn Maisel, Catlin, B. W., Flint, J., Belser, W. L., Dissosway, C., Kennedy, Frank L., Meyer, N. C., Schwartz, A. (1950) The gene. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 49, 1949-1950. Carnegie Institution of Washington, Washington, D.C., pp. 144-157.
Demerec, Milislav, Witkin, Evelyn Maisel, Newcombe, H. B., Beale, G. H. (1947) The gene. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 46, 1946-1947. Carnegie Institution of Washington, Washington, D.C., pp. 127-135.
Demetrick, D. J., Dewald, G. W., Lanman, J., Bahou, W. F. (February 1996) The thrombin receptor gene is centromeric to the common proximal breakpoint in patients with the 5q- syndrome: identification of a previously unrecognized chromosome 5 inversion. British Journal of Haematology, 92 (2). pp. 339-43. ISSN 0007-1048 (Print)
Demetrick, D. J., Matsumoto, S., Hannon, G. J., Okamoto, K., Xiong, Y., Zhang, H., Beach, D. H. (1995) Chromosomal mapping of the genes for the human cell cycle proteins cyclin C (CCNC), cyclin E (CCNE), p21 (CDKN1) and KAP (CDKN3). Cytogenetics and Cell Genetics, 69 (3-4). pp. 190-192. ISSN 03010171 (ISSN)
Dent, P., Booth, L., Roberts, J. L., Liu, J., Poklepovic, A., Lalani, A. S., Tuveson, D., Martinez, J., Hancock, J. F. (June 2019) Neratinib inhibits Hippo/YAP signaling, reduces mutant K-RAS expression, and kills pancreatic and blood cancer cells. Oncogene. ISSN 0950-9232
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., Guernec, G., Martin, D., Merkel, A., Knowles, D. G., Lagarde, J., Veeravalli, L., Ruan, X. A., Ruan, Y. J., Lassmann, T., Carninci, P., Brown, J. B., Lipovich, L., Gonzalez, J. M., Thomas, M., Davis, C. A., Shiekhattar, R., Gingeras, T. R., Hubbard, T. J., Notredame, C., Harrow, J., Guigo, R. (September 2012) The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression. Genome Research, 22 (9 Spe). pp. 1775-1789. ISSN 1088-9051
Devlin, C., Tice-Baldwin, K., Shore, D., Arndt, K. T. (July 1991) RAP1 is required for BAS1/BAS2- and GCN4-dependent transcription of the yeast HIS4 gene. Mol Cell Biol, 11 (7). pp. 3642-51. ISSN 0270-7306 (Print)0270-7306 (Linking)
Diniz, A. L., da Silva, D. I. R., Lembke, C. G., Costa, M. D. L., Ten-Caten, F., Li, F., Vilela, R. D., Menossi, M., Ware, D., Endres, L., Souza, G. M. (November 2020) Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane. Int J Mol Sci, 21 (23). p. 9124. ISSN 1422-0067
Dong, X., Greven, M. C., Kundaje, A., Djebali, S., Brown, J. B., Cheng, C., Gingeras, T. R., Gerstein, M., Guigó, R., Birney, E., Weng, Z. (September 2012) Modeling gene expression using chromatin features in various cellular contexts. Genome Biology, 13 (9).
Dore, L. C., Vakoc, C. R., Blobel, G. A., Hardison, R. C., Bodine, D. M., Gallagher, P. G., Weiss, M. J. (November 2005) Genomic organization, chromatin structure, and transcriptional regulation of the murine Alpha Hemoglobin Stabilizing Protein (AHSP) gene. Blood, 106 (11). 1012A-1012A. ISSN 0006-4971
Dow, L. E., Nasr, Z., Saborowski, M., Ebbesen, S. H., Manchado, E., Tasdemir, N., Lee, T., Pelletier, J., Lowe, S. W. (April 2014) Conditional Reverse Tet-Transactivator Mouse Strains for the Efficient Induction of TRE-Regulated Transgenes in Mice. PLoS ONE, 9 (4). e95236. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Dowen, Jill M., Bilodeau, Steve, Orlando, David A., Hübner, Michael R., Abraham, Brian J., Spector, David L., Young, Richard A. (October 2013) Multiple Structural Maintenance of Chromosome Complexes at Transcriptional Regulatory Elements. Stem Cell Reports, 1 (5). pp. 371-378. ISSN 2213-6711
Du, Yanfang, Lunde, China, Li, Yunfu, Jackson, David, Hake, Sarah, Zhang, Zuxin (February 2021) Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize. Proceedings of the National Academy of Sciences of USA, 118 (7). e2019218118-e2019218118. ISSN 0027-8424
Dubois, M., Van den Broeck, L., Claeys, H., Van Vlierberghe, K., Matsui, M., Inze, D. (September 2015) The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis. Plant Physiol, 169 (1). pp. 166-79. ISSN 1532-2548 (Electronic)0032-0889 (Linking)
Duelli, D. M., Lazebnik, Y. A. (2000) Primary cells suppress oncogene-dependent apoptosis. Nature Cell Biology, 2 (11). pp. 859-862. ISSN 1465-7392
Dugourd, Aurelien, Kuppe, Christoph, Sciacovelli, Marco, Gjerga, Enio, Gabor, Attila, Emdal, Kristina B, Vieira, Vitor, Bekker-Jensen, Dorte B, Kranz, Jennifer, Bindels, Eric MJ, Costa, Ana SH, Sousa, Abel, Beltrao, Pedro, Rocha, Miguel, Olsen, Jesper V, Frezza, Christian, Kramann, Rafael, Saez-Rodriguez, Julio (January 2021) Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses. Molecular Systems Biology, 17 (1). e9730. ISSN 1744-4292
Dukler, N., Booth, G. T., Huang, Y. F., Tippens, N., Waters, C. T., Danko, C. G., Lis, J. T., Siepel, A. (November 2017) Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol. Genome Res, 27 (11). pp. 1816-1829. ISSN 1088-9051
da Silva, Edaise M, Selenica, Pier, Vahdatinia, Mahsa, Pareja, Fresia, Da Cruz Paula, Arnaud, Ferrando, Lorenzo, Gazzo, Andrea M, Dopeso, Higinio, Ross, Dara S, Bakhteri, Ariya, Riaz, Nadeem, Chandarlapaty, Sarat, Razavi, Pedram, Norton, Larry, Wen, Hannah Y, Brogi, Edi, Weigelt, Britta, Zhang, Hong, Reis-Filho, Jorge S (April 2021) TERT promoter hotspot mutations and gene amplification in metaplastic breast cancer. npj Breast Cancer, 7 (1). p. 43. ISSN 2374-4677
de Stanchina, E., Lowe, S. W. (December 2002) Tumour suppression: something for nothing? Nature Cell Biology, 4 (12). E275-E276. ISSN 1465-7392
E
Eakin, A. E., Mills, A. A., Harth, G., McKerrow, J. H., Craik, C. S. (1992) The sequence, organization, and expression of the major cysteine protease (cruzain) from Trypanosoma cruzi. Journal of Biological Chemistry, 267 (11). pp. 7411-7420. ISSN 00219258 (ISSN)
Efrat, S., Linde, S., Kofod, H., Spector, D., Delannoy, M., Grant, S., Hanahan, D., Baekkeskov, S. (December 1988) Beta-cell lines derived from transgenic mice expressing a hybrid insulin gene-oncogene. Proceedings of the National Academy of Sciences of the United States of America, 85 (23). pp. 9037-41. ISSN 0027-8424 (Print)0027-8424
Ehrenhofer-Wolfer, K., Puchner, T., Schwarz, C., Rippka, J., Blaha-Ostermann, S., Strobl, U., Hormann, A., Bader, G., Kornigg, S., Zahn, S., Sommergruber, W., Schweifer, N., Zichner, T., Schlattl, A., Neumuller, R. A., Shi, J., Vakoc, C. R., Kogl, M., Petronczki, M., Kraut, N., Pearson, M. A., Wohrle, S. (August 2019) SMARCA2-deficiency confers sensitivity to targeted inhibition of SMARCA4 in esophageal squamous cell carcinoma cell lines. Sci Rep, 9 (1). p. 11661. ISSN 2045-2322
Eifert, C., Powers, R. S. (June 2012) From cancer genomes to oncogenic drivers, tumour dependencies and therapeutic targets. Nat Rev Cancer, 12 (8). pp. 572-578. ISSN 1474-1768 (Electronic)1474-175X (Linking)
Elkin, Rena, Oh, Jung Hun, Dela Cruz, Filemon, Norton, Larry, Deasy, Joseph O, Kung, Andrew L, Tannenbaum, Allen R (January 2024) Dynamic network curvature analysis of gene expression reveals novel potential therapeutic targets in sarcoma. Scientific Reports, 14 (1). p. 488. ISSN 2045-2322 (Public Dataset)
Ellegood, J., Anagnostou, E., Babineau, B. A., Crawley, J. N., Lin, L., Genestine, M., DiCicco-Bloom, E., Lai, J. K., Foster, J. A., Penagarikano, O., Geschwind, D. H., Pacey, L. K., Hampson, D. R., Laliberte, C. L., Mills, A. A., Tam, E., Osborne, L. R., Kouser, M., Espinosa-Becerra, F., Xuan, Z., Powell, C. M., Raznahan, A., Robins, D. M., Nakai, N., Nakatani, J., Takumi, T., van Eede, M. C., Kerr, T. M., Muller, C., Blakely, R. D., Veenstra-VanderWeele, J., Henkelman, R. M., Lerch, J. P. (February 2015) Clustering autism: using neuroanatomical differences in 26 mouse models to gain insight into the heterogeneity. Mol Psychiatry, 20 (1). pp. 118-125. ISSN 1359-4184
Ezhkova, E. (March 2005) Role of the Proteasome in Gene Control. PhD thesis, Cold Spring Harbor Laboratory.
Ezhkova, E., Pasolli, H. A., Parker, J. S., Stokes, N., Su, I. H., Hannon, G. J., Tarakhovsky, A., Fuchs, E. (March 2009) Ezh2 Orchestrates Gene Expression for the Stepwise Differentiation of Tissue-Specific Stem Cells. Cell, 136 (6). pp. 1122-1135. ISSN 0092-8674
F
Falcone Ferreyra, M. L., Casas, M. I., Questa, J. I., Herrera, A. L., Deblasio, S., Wang, J., Jackson, D., Grotewold, E., Casati, P. (2012) Evolution and expression of tandem duplicated maize flavonol synthase genes. Frontiers in Plant Science, 3. p. 101. ISSN 1664-462x
Farmer, A. A., Loftus, T. M., Mills, A. A., Sato, K. Y., Neill, J. D., Tron, T., Yang, M., Trumpower, B. L., Stanbridge, E. J. (1994) Extreme evolutionary conservation of QM, a novel c-Jun associated transcription factor. Human Molecular Genetics, 3 (5). pp. 723-728. ISSN 09646906 (ISSN)
Fasano, O., Taparowsky, E., Fiddes, J., Wigler, M. H., Goldfarb, M. (1983) Sequence and Structure of the Coding Regions of the Human H-Ras-1 Gene from T-24 Bladder Carcinoma Cells. Journal of Molecular & Applied Genetics, 2 (2). pp. 173-180. ISSN 0271-6801
Fearnhead, H. O., McCurrach, M. E., O'Neill, J., Zhang, K., Lowe, S. W., Lazebnik, Y. A. (1997) Oncogene-dependent apoptosis in extracts from drug-resistant cells. Genes Dev, 11 (10). pp. 1266-1276. ISSN 0890-9369
Fearnhead, H. O., Rodriguez, J., Govek, E. E., Guo, W., Kobayashi, R., Hannon, G., Lazebnik, Y. A. (1998) Oncogene-dependent apoptosis is mediated by caspase-9. Proc Natl Acad Sci U S A, 95 (23). pp. 13664-13669. ISSN 0027-8424
Feigman, M.J., Moss, M.A., Chen, C., Cyrill, S.L., Cicone, M.F., Trousdell, M.C., Yang, S.-T., Frey, W.D., Wilkinson, J.E., Dos Santos, C. O. (May 2020) Pregnancy Reprograms the Epigenome of Mammary Epithelial Cells and Blocks the Development of Premalignant Lesions. Nat Commun, 11 (1). p. 2649. ISSN 2041-1723
Feilotter, H., Nurse, P., Young, P. G. (February 1991) Genetic and molecular analysis of cdr1/nim1 in Schizosaccharomyces pombe. Genetics, 127 (2). pp. 309-18. ISSN 0016-6731 (Print)0016-6731 (Linking)
Ferbeyre, G., De Stanchina, E., Lin, A. W., Querido, E., McCurrach, M. E., Hannon, G. J., Lowe, S. W. (2002) Oncogenic ras and p53 cooperate to induce cellular senescence. Molecular and Cellular Biology, 22 (10). pp. 3497-3508. ISSN 02707306 (ISSN)
Ferbeyre, G., Lowe, S. W. (January 2002) Ageing: The price of tumour suppression? Nature, 415 (6867). pp. 26-27. ISSN 0028-0836
Ferbeyre, G., de Stanchina, E., Querido, E., Baptiste, N., Prives, C., Lowe, S. W. (August 2000) PML is induced by oncogenic ras and promotes premature senescence. Genes & Development, 14 (16). pp. 2015-2027. ISSN 0890-9369
Ferrandiz, C., Gu, Q., Martienssen, R., Yanofsky, M. F. (February 2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development, 127 (4). pp. 725-734. ISSN 0950-1991
Filipkowski, R. K. (2000) Inducing gene expression in barrel cortex - focus on immediate early genes. Acta Neurobiologiae Experimentalis, 60 (3). pp. 411-418. ISSN 0065-1400
Filipkowski, R. K., Rydz, M., Kaczmarek, L. (2001) Expression of c-Fos, Fos B, Jun B, and Zif268 transcription factor proteins in rat barrel cortex following apomorphine-evoked whisking behavior. Neuroscience, 106 (4). pp. 679-688. ISSN 0306-4522
Fischer, Stephan, Gillis, Jesse (September 2021) Defining the extent of gene function using ROC curvature. BioRxiv. (Unpublished)
Fischer, Stephan, Gillis, Jesse (October 2022) Defining the extent of gene function using ROC curvature. Bioinformatics. btac692. ISSN 1367-4803
Fisher, Matthew L, Balinth, Seamus, Mills, Alea A (September 2022) ΔNp63α in cancer: importance and therapeutic opportunities. Trends in Cell Biology. S0962-8924(22)00194. ISSN 0962-8924
Forcier, T. L., Ayaz, A., Gill, M. S., Jones, D., Phillips, R., Kinney, J. B. (December 2018) Measuring cis-regulatory energetics in living cells using allelic manifolds. eLife, 7. ISSN 2050084X (ISSN)
Foster, Toshi M, Timmermans, Marja C. P. (2009) Axial Patterning of the Maize Leaf. In: Handbook of Maize: Its Biology. Springer New York, pp. 161-178. ISBN 978-0-387-79417-4
Freed-Pastor, W. A., Mizuno, H., Zhao, X., Langerød, A., Moon, S. H., Rodriguez-Barrueco, R., Barsotti, A., Chicas, A., Li, W., Polotskaia, A., Bissell, M. J., Osborne, T. F., Tian, B., Lowe, S. W., Silva, J. M., Børresen-Dale, A. L., Levine, A. J., Bargonetti, J., Prives, C. (January 2012) Mutant p53 disrupts mammary tissue architecture via the mevalonate pathway. Cell, 148 (1-2). pp. 244-258. ISSN 00928674 (ISSN)
Fregoso, O. I., Das, S., Akerman, M., Krainer, A. R. (March 2013) Splicing-Factor Oncoprotein SRSF1 Stabilizes p53 via RPL5 and Induces Cellular Senescence. Molecular Cell, 50 (1). pp. 56-66. ISSN 1097-2765
Frezza, A. M., Assi, T., Lo Vullo, S., Ben-Ami, E., Dufresne, A., Yonemori, K., Noguchi, E., Siontis, B., Ferraro, R., Teterycz, P., Duffaud, F., Ravi, V., Vincenzi, B., Gelderblom, H., Pantaleo, M. A., Baldi, G. G., Desar, I., Fedenko, A., Maki, R. G., Jones, R. L., Benjamin, R. S., Blay, J. Y., Kawai, A., Gounder, M., Gronchi, A., Le Cesne, A., Mir, O., Czarnecka, A. M., Schuetze, S., Wagner, A. J., Adam, J., Barisella, M., Sbaraglia, M., Hornick, J. L., Meurgey, A., Mariani, L., Casali, P. G., Thornton, K., Stacchiotti, S. (September 2019) Systemic treatments in MDM2 positive intimal sarcoma: A multicentre experience with anthracycline, gemcitabine, and pazopanib within the World Sarcoma Network. Cancer. ISSN 0008-543x
Fridman, J. S., Hernando, E., Hemann, M. T., de Stanchina, E., Cordon-Cardo, C., Lowe, S. W. (September 2003) Tumor promotion by Mdm2 splice variants unable to bind p53. Cancer Research, 63 (18). pp. 5703-5706. ISSN 0008-5472
Fridman, J. S., Lowe, S. W. (December 2003) Control of apoptosis by p53. Oncogene, 22 (56). pp. 9030-9040. ISSN 0950-9232
Frieboes, R. M., Moises, H. W., Gattaz, W. F., Yang, L., Li, T., Liu, X., Vetter, P., Macciardi, F., Hwu, H. G., Henn, F. (April 2001) Lack of association between schizophrenia and the phospholipase-A(2) genes cPLA2 and sPLA2. Am J Med Genet, 105 (3). pp. 246-9. ISSN 0148-7299 (Print)0148-7299 (Linking)
Futcher, A. B. (March 1988) The 2-Mu-M Circle Plasmid of Saccharomyces-Cerevisiae. Yeast, 4 (1). pp. 27-40. ISSN 0749-503X
Futcher, B. (December 2000) Microarrays and cell cycle transcription in yeast. Current Opinion in Cell Biology, 12 (6). pp. 710-715. ISSN 0955-0674
G
Gao, Yuan, He, Xue-Yan, Wu, Xiaoli S, Huang, Yu-Han, Toneyan, Shushan, Ha, Taehoon, Ipsaro, Jonathan J, Koo, Peter K, Joshua-Tor, Leemor, Bailey, Kelly M, Egeblad, Mikala, Vakoc, Christopher R (January 2023) ETV6 dependency in Ewing sarcoma by antagonism of EWS-FLI1-mediated enhancer activation. Nature Cell Biology. ISSN 1465-7392 (Public Dataset)
Gass, P., Reichardt, H. M., Strekalova, T., Henn, F., Tronche, F. (August 2001) Mice with targeted mutations of glucocorticoid and mineralocorticoid receptors: models for depression and anxiety? Physiol Behav, 73 (5). pp. 811-25. ISSN 0031-9384 (Print)0031-9384 (Linking)
Gaudinier, A., Rodriguez-Medina, J., Zhang, L., Olson, A., Liseron-Monfils, C., Bagman, A. M., Foret, J., Abbitt, S., Tang, M., Li, B., Runcie, D. E., Kliebenstein, D. J., Shen, B., Frank, M. J., Ware, D., Brady, S. M. (October 2018) Transcriptional regulation of nitrogen-associated metabolism and growth. Nature, 563 (7730). pp. 259-264. ISSN 0028-0836
Gegenhuber, B., Tollkuhn, J. (January 2020) Signatures of Sex: Sex Differences in Gene Expression in the Vertebrate Brain. Wiley Interdiscip Rev Dev Biol, 9 (1). e348.
Gershon, E. S., Kelsoe, J. R., Kendler, K. S., Watson, J. D. (November 2001) A scientific opportunity. Science, 294 (5544). p. 957. ISSN 0036-8075
Gerst, J. E., Rodgers, L., Riggs, M., Wigler, M. (May 1992) SNC1, a yeast homolog of the synaptic vesicle-associated membrane protein/synaptobrevin gene family: genetic interactions with the RAS and CAP genes. Proc Natl Acad Sci U S A, 89 (10). pp. 4338-42. ISSN 0027-8424 (Print)0027-8424 (Linking)
Gilbert, M. T., Sun, J. D., Yan, Y., Oddoux, C., Lazarus, A., Tansey, W. P., Lavin, T. N., Catanzaro, D. F. (November 1994) Renin Gene Promoter Activity in Gc Cells Is Regulated by Camp and Thyroid-Hormone through Pit-1-Dependent Mechanisms. Journal of Biological Chemistry, 269 (45). pp. 28049-28054. ISSN 0021-9258
Gillis, J. (November 2012) Talk from Jessie Gillis at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)
Gillis, J., Mistry, M., Pavlidis, P. (2010) Gene function analysis in complex data sets using ErmineJ. Nature Protocols, 5 (6). pp. 1148-1159. ISSN 17502799 (ISSN)
Gillis, J., Pavlidis, P. (2013) Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA). BMC Bioinformatics, 14 (Suppl). S15. ISSN 1471-2105 (Electronic)1471-2105 (Linking)
Gillis, J., Pavlidis, P. (2013) Cross-validation calculation from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]
Gillis, J., Pavlidis, P. (2012) Exceptional Edges matrices from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]
Gillis, J., Pavlidis, P. (2011) Figure data from "The role of indirect connections in gene networks in predicting function" Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]
Gillis, J., Pavlidis, P. (2012) Gene Ontology matrices (with descriptions, IDs, etc) from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks. Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]
Gillis, J., Pavlidis, P. (2011) Gene Ontology matrices from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]
Gillis, J., Pavlidis, P. (2012) Gene lists from Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]
Gillis, J., Pavlidis, P. (2011) Gene lists from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]
Gillis, J., Pavlidis, P. (March 2012) "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks. PLoS Computational Biology, 8 (3). ISSN 1553-734X
Gillis, J., Pavlidis, P. (2011) Network data from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011)Bioinformatics, 27 (13). pp. 1860-1866. [Dataset]
Gillis, J., Pavlidis, P. (2011) The impact of multifunctional genes on guilt "by association "analysis. PLoS One, 6 (2). ISSN 19326203 (ISSN)
Gillis, J., Pavlidis, P. (2011) The role of indirect connections in gene networks in predicting function. Bioinformatics, 27 (13). pp. 1860-1866. ISSN 13674803 (ISSN)
Gineau, L., Cognet, C., Kara, N., Lach, F. P., Dunne, J., Veturi, U., Picard, C., Trouillet, C., Eidenschenk, C., Aoufouchi, S., Alcaïs, A., Smith, O., Geissmann, F., Feighery, C., Abel, L., Smogorzewska, A., Stillman, B., Vivier, E., Casanova, J. L., Jouanguy, E. (March 2012) Partial MCM4 deficiency in patients with growth retardation, adrenal insufficiency, and natural killer cell deficiency. Journal of Clinical Investigation, 122 (3). pp. 821-832. ISSN 00219738 (ISSN)
Gingeras, T. R. (1982) The isolation and characterization of the E. coli dam methylase gene. In: Metabolism and Enzymology of Nucleic Acids. Slovak Academy of Sciences, pp. 320-340.
Girish, Vishruth, Lakhani, Asad A, Scaduto, Christine M, Thompson, Sarah L, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Lukow, Devon A, Yuan, Monet Lou, Kandikuppa, Pranav K, Stevens, Eric C, Lee, Sophia N, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping, Sheltzer, Jason M (January 2023) Oncogene-like addiction to aneuploidy in human cancers. bioRxiv. (Public Dataset) (Submitted)
Girish, Vishruth, Lakhani, Asad A, Thompson, Sarah L, Scaduto, Christine M, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Kandikuppa, Pranav K, Lukow, Devon A, Yuan, Monet Lou, Stevens, Eric C, Lee, Sophia N, Schukken, Klaske M, Akalu, Saron M, Vasudevan, Anand, Zou, Charles, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping, Sheltzer, Jason M (August 2023) Oncogene-like addiction to aneuploidy in human cancers. Science, 381 (6660). eadg4521. ISSN 0036-8075 (Public Dataset)
Giuliano, C. J., Lin, A., Girish, V., Sheltzer, J. M. (August 2019) Generating Single Cell–Derived Knockout Clones in Mammalian Cells with CRISPR/Cas9. Current Protocols in Molecular Biology, 128 (1). Art number e100. ISSN 19343639 (ISSN)
Giuliano, C. J., Lin, A., Smith, J. C., Palladino, A. C., Sheltzer, J. M. (February 2018) MELK expression correlates with tumor mitotic activity but is not required for cancer growth. Elife, 7. ISSN 2050-084x
Gladman, N., Jiao, Y., Lee, Y. K., Zhang, L., Chopra, R., Regulski, M., Burow, G., Hayes, C., Christensen, S. A., Dampanaboina, L., Chen, J., Burke, J., Ware, D., Xin, Z. (October 2019) Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module. Int J Mol Sci, 20 (19). ISSN 1422-0067
Goldfarb, L. G., Brown, P., McCombie, W. R., Goldgaber, D., Swergold, G. D., Wills, P. R., Cervenakova, L., Baron, H., Gibbs Jr, C. J., Gajdusek, D. C. (1991) Transmissible familial Creutzfeldt-Jakob disease associated with five, seven, and eight extra octapeptide coding repeats in the PRNP gene. Proceedings of the National Academy of Sciences of the United States of America, 88 (23). pp. 10926-10930. ISSN 00278424 (ISSN)
Goldfarb, L. G., Haltia, M., Brown, P., Nieto, A., Kovanen, J., McCombie, W. R., Trapp, S., Carleton Gajdusek, D. (1991) New mutation in scrapie amyloid precursor gene (at codon 178) in finnish Creutzfield-Jakob kindred. Lancet, 337 (8738). p. 425. ISSN 01406736 (ISSN)
Grange, P., Mitra, Partha P. (March 2012) Computational neuroanatomy and gene expression: Optimal sets of marker genes for brain regions. 46th Annual Conference on Information Sciences and Systems (CISS).
Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P. (2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. Quantitative Biology, 1 (1). pp. 91-100. ISSN 2095-4689
Grange, P., Bohland, J. W., Okaty, B. W., Sugino, K., Bokil, H., Nelson, S. B., Ng, L., Hawrylycz, M., Mitra, P. P. (April 2014) Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5397-5402. ISSN 0027-8424
Groover, A. T., Martienssen, R. M. (June 2000) Identifying genes involved in pattern formation using Arabidopsis genetraps. Developmental Biology, 222 (1). p. 226. ISSN 0012-1606
Grotewold, E., Athma, P., Peterson, T. (November 1991) A possible hot spot for Ac insertion in the maize P gene. Mol Gen Genet, 230 (1-2). pp. 329-31. ISSN 0026-8925 (Print)0026-8925 (Linking)
Grotewold, E., Peterson, T. (January 1994) Isolation and characterization of a maize gene encoding chalcone flavonone isomerase. Mol Gen Genet, 242 (1). pp. 1-8. ISSN 0026-8925 (Print)
Gu, Q., Ferrandiz, C., Yanofsky, M. F., Martienssen, R. (April 1998) The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development. Development, 125 (8). pp. 1509-1517. ISSN 0950-1991
Guillotin, Bruno, Rahni, Ramin, Passalacqua, Michael, Mohammed, Mohammed Ateequr, Xu, Xiaosa, Raju, Sunil Kenchanmane, Ramírez, Carlos Ortiz, Jackson, David, Groen, Simon C, Gillis, Jesse, Birnbaum, Kenneth D (May 2023) A pan-grass transcriptome reveals patterns of cellular divergence in crops. Nature, 617 (7962). pp. 785-791. ISSN 0028-0836
Guo, Yu, Alexander, Katherine, Clark, Andrew G, Grimson, Andrew, Yu, Haiyuan (November 2016) Integrated network analysis reveals distinct regulatory roles of transcription factors and microRNAs. RNA: A publication of the RNA Society, 22 (11). pp. 1663-1672. ISSN 1355-8382
Guo, M., Thomas, J., Collins, G. A., Timmermans, M. C. P. (January 2008) Direct Repression of KNOX Loci by the ASYMMETRIC LEAVES1 Complex of Arabidopsis. Plant Cell, 20 (1). pp. 48-58.
Guo, X., Keyes, W. M., Papazoglu, C., Zuber, J., Li, W., Lowe, S. W., Vogel, H., Mills, A. A. (December 2009) TAp63 induces senescence and suppresses tumorigenesis in vivo. Nat Cell Biol, 11 (12). 1451–1457.
Gutiérrez, R. A., Stokes, T. L., Thum, K., Xu, X., Obertello, M., Katari, M. S., Tanurdzic, M., Dean, A., Nero, D. C., McClung, C. R., Coruzzi, G. M. (March 2008) Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci U S A, 105 (12). pp. 4939-4944. ISSN 0027-8424
Gutschner, T., Hammerle, M., Eissmann, M., Hsu, J., Kim, Y., Hung, G. N., Revenko, A., Arun, G., Stentrup, M., Gross, M., Zornig, M., MacLeod, A. R., Spector, D. L., Diederichs, S. (April 2013) The long non-coding RNA MALAT1 is an essential gene regulator for lung cancer metastasis in a novel human knockout model. Cancer Research, 73 (8 (Sup). p. 1121. ISSN 0008-5472
Gutschner, T., Hammerle, M., Eißmann, M., Hsu, J., Kim, Y., Hung, G., Revenko, A., Arun, G., Stentrup, M., Groß, M., Zörnig, M., MacLeod, A. R., Spector, D. L., Diederichs, S. (February 2013) The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Research, 73 (3). pp. 1180-1189. ISSN 00085472 (ISSN)
H
Haas, K., Jensen, K., Sin, W. C., Foa, L., Cline, H. T. (June 2002) Targeted electroporation in Xenopus tadpoles in vivo - from single cells to the entire brain. Differentiation, 70 (4-5). pp. 148-154. ISSN 0301-4681
Haas, K., Sin, W. C., Javaherian, A., Li, Z., Cline, H. T. (March 2001) Single-cell electroporation for gene transfer in vivo. Neuron, 29 (3). pp. 583-591. ISSN 0896-6273
Hacisalihoglu, G., Hilgert, U., Nash, E. B., Micklos, D. A. (2008) An innovative plant genomics and gene annotation program for high school, community college, and university faculty. CBE Life Sci Educ, 7 (3). pp. 310-6.
Hall, I. M., Grewal, S. I. S. (2003) Structure and function of heterochromatin: implications for epigenetic gene silencing and genome organization. In: RNAi : a guide to gene silencing. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. , pp. 205-232. ISBN 978-087969641-2
Hammell, C. M. (November 2012) Talk from Chris Hammell at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)
Hammond, S. M., Caudy, A. A., Hannon, G. J. (2001) Post-transcriptional gene silencing by double-stranded RNA. Nature Reviews Genetics, 2 (2). pp. 110-119. ISSN 14710056 (ISSN)
Han, C. D., Coe, E. H., Martienssen, R. A. (1992) Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. EMBO J, 11 (11). pp. 4037-4046. ISSN 0261-4189
Harris, L. N., Parker, J., Broadwater, G., Schulz, V., Halligan, K., Geyda, K., Seidman, A., Berry, D., Winer, E., Hudis, C., Krasnitz, A., Hicks, J., Tuck, D. P., Perou, C. (December 2009) Genome-Wide Profiling of Archived Material from CALGB 9840 and 9342 for Paclitaxel (P) and Trastuzumab (T) Response Biomarkers Using Gene Expression and Copy Number Analysis. Cancer Research, 69 (24 (S3). 716S-717S. ISSN 0008-5472
Harris, Benjamin D, Crow, Megan, Fischer, Stephan, Gillis, Jesse (May 2021) Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain. Cell Systems. ISSN 2405-4712
Hassell, J. A., Weber, J. (December 1978) Genetic analysis of adenovirus type 2. VIII. Physical locations of temperature-sensitive mutations. J Virol, 28 (3). pp. 671-8. ISSN 0022-538X (Print)0022-538X (Linking)
Hazra, Rasmani, Utama, Raditya, Naik, Payal, Dobin, Alexander, Spector, David L (October 2023) Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA sequencing datasets. Stem Cell Reports. ISSN 2213-6711
He, Shuning, Krens, Sf Gabby, Zhan, Huiqing, Gong, Zhiyuan, Hogendoorn, Pancras Cw, Spaink, Herman P, Snaar-Jagalska, B Ewa (September 2011) A ΔRaf1-ER-inducible oncogenic zebrafish liver cell model identifies hepatocellular carcinoma signatures. Journal of Pathology, 225 (1). pp. 19-28. ISSN 0022-3417
He, X., He, L., Hannon, G. J. (2007) The guardian's little helper: MicroRNAs in the p53 tumor suppressor network. Cancer Research, 67 (23). pp. 11099-11101. ISSN 00085472 (ISSN)
He, C., Bozler, J., Janssen, K. A., Wilusz, J. E., Garcia, B. A., Schorn, A. J., Bonasio, R. (January 2021) TET2 chemically modifies tRNAs and regulates tRNA fragment levels. Nature Structural and Molecular Biology, 28 (1). pp. 62-70. ISSN 1545-9993
Hecht, V., Vielle-Calzada, J. P., Hartog, M. V., Schmidt, E. D. L., Boutilier, K., Grossniklaus, U., de Vries, S. C. (November 2001) The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiology, 127 (3). pp. 803-816. ISSN 0032-0889
Hein, N., Bywater, M. J., Stanley, K., Verbrugge, I., Cullinane, C., Baker, A., Zuber, H., Rappaport, A., Drygin, D., Huser, N., Bliesath, J., Ryckman, D. M., Rice, W. G., Lowe, S. W., Johnstone, R. W., Pearson, R. B., McArthur, G. A., Hannan, R. D. (November 2011) Inhibition of RNA Polymerase I Transcription by CX-5461 As a Therapeutic Strategy for the Cancer-Specific Activation of p53 in MLL-Rearranged Acute Myeloid Leukemias. Blood, 118 (21). p. 1548. ISSN 0006-4971
Hemish, J., Nakaya, N., Mittal, V., Enikolopov, G. (October 2003) Nitric oxide activates diverse signaling pathways to regulate gene expression. Journal of Biological Chemistry, 278 (43). pp. 42321-42329. ISSN 0021-9258
Hendelman, Anat, Zebell, Sophia, Rodriguez-Leal, Daniel, Dukler, Noah, Robitaille, Gina, Wu, Xuelin, Kostyun, Jamie, Tal, Lior, Wang, Peipei, Bartlett, Madelaine E, Eshed, Yuval, Efroni, Idan, Lippman, Zachary B (April 2021) Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection. Cell, 184 (7). 1724-1739.e16. ISSN 0092-8674
Hendricks, J. C., Williams, J. A., Panckeri, K., Kirk, D., Tello, M., Yin, J. C. P., Sehgal, A. (November 2001) A non-circadian role for cAMP signaling and CREB activity in Drosophila rest homeostasis. Nature Neuroscience, 4 (11). pp. 1108-1115. ISSN 1097-6256
Hernandez, N. (July 2001) Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription. Journal of Biological Chemistry, 276 (29). pp. 26733-26736. ISSN 0021-9258
Herr, W. (April 1991) Gene activation. An agent of suppression. Nature, 350 (6319). pp. 554-5. ISSN 0028-0836 (Print)0028-0836 (Linking)
Hershey, A. D. (May 1970) Genes and hereditary characteristics. Nature, 226 (5247). pp. 697-700. ISSN 0028-0836 (Print)0028-0836 (Linking)
Hershey, A. D., Davidson, H. (November 1951) Allelic and Nonallelic Genes Controlling Host Specificity in a Bacteriophage. Genetics, 36 (6). pp. 667-75. ISSN 0016-6731 (Print)0016-6731 (Linking)
Hershey, Alfred Day (1956) Genetic structure and function in bacteriophage T2. In: Enzymes: Units of Biological Structure and Function. Henry Ford Hospital International Symposium . Academic Press, New York, pp. 109-117.
Hershlag, A., Peyser, A., Bristow, S. L., Puig, O., Pollock, A., Niknazar, M., Mills, A. A. (December 2019) The potential impact of tumor suppressor genes on human gametogenesis: a case-control study. J Assist Reprod Genet. ISSN 1058-0468
Hicks, J., Strathern, J., Klar, A., Ismail, S., Broach, J. (1984) Structure of the SAD mutation and the location of control sites at silent mating type genes in Saccharomyces cerevisiae. Molecular and Cellular Biology, 4 (7). pp. 1278-1285. ISSN 02707306 (ISSN)
Hicks, J., Strathern, J. N. (1978) Interconversion of mating type in S cervisiae and the cassette model for gene transfer. Brookhaven symposia in biology, No. 29. pp. 233-242.
Hicks, J., Strathern, J. N., Klar, A. J. S. (1979) Transposable mating type genes in Saccharomyces cerevisiae. Nature, 282 (5738). pp. 478-483. ISSN 00280836 (ISSN)
Hicks, J. B., Herskowitz, I. (March 1977) Interconversion of Yeast Mating Types II. Restoration of Mating Ability to Sterile Mutants in Homothallic and Heterothallic Strains. Genetics, 85 (3). pp. 373-93. ISSN 0016-6731 (Print)0016-6731 (Linking)
Hicks, J. B., Strathern, J. N., Herskowitz, I. (March 1977) Interconversion of Yeast Mating Types III. Action of the Homothallism (HO) Gene in Cells Homozygous for the Mating Type Locus. Genetics, 85 (3). pp. 395-405. ISSN 0016-6731 (Print)0016-6731 (Linking)
Hicks, J. B., Strathern, J. N., Klar, A. J. (1982) Cloning by complementation in yeast: the mating type genes. In: Genetic engineering: principles and methods. Plenum Press, New York, pp. 219-248.
Hirao, A., Cheung, A., Duncan, G., Girard, P. M., Elia, A. J., Wakeham, A., Okada, H., Sarkissian, T., Wong, J. A., Sakai, T., de Stanchina, E., Bristow, R. G., Suda, T., Lowe, S. W., Jeggo, P. A., Elledge, S. J., Mak, T. W. (September 2002) Chk2 is a tumor suppressor that regulates apoptosis in both an ataxia telangiectasia mutated (ATM)-dependent and an ATM-independent manner. Molecular and Cellular Biology, 22 (18). pp. 6521-6532. ISSN 0270-7306
Hoeppner, D. J., Hengartner, M. O., Schnabel, R. (July 2001) Engulfment genes cooperate with ced-3 to promote cell death in Caenorhabditis elegans. Nature, 412 (6843). pp. 202-206. ISSN 0028-0836
Holembowski, L., Kramer, D., Riedel, D., Sordella, R., Nemajerova, A., Dobbelstein, M., Moll, U. M. (March 2014) Tap73 is essential for germ cell adhesion and maturation in testis. Journal of Cell Biology, 204 (7). pp. 1173-1190. ISSN 15408140
Holmes, A., Roseaulin, L., Schurra, C., Waxin, H., Lambert, S., Zaratiegui, M., Martienssen, R. A., Arcangioli, B. (December 2012) Lsd1 and Lsd2 Control Programmed Replication Fork Pauses and Imprinting in Fission Yeast. Cell Reports, 2 (6). pp. 1513-1520. ISSN 2211-1247
Hong, W., Nakazawa, M., Chen, Y. Y., Kori, R., Vakoc, C. R., Rakowski, C., Blobel, G. A. (2005) FOG-1 recruits the NuRD repressor complex to mediate transcriptional repression by GATA-1. Embo Journal, 24 (13). pp. 2367-2378. ISSN 0261-4189
Hrvatin, S., Hochbaum, D. R., Nagy, M. A., Cicconet, M., Robertson, K., Cheadle, L., Zilionis, R., Ratner, A., Borges-Monroy, R., Klein, A. M., Sabatini, B. L., Greenberg, M. E. (January 2018) Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci, 21 (1). pp. 120-129. ISSN 1097-6256 (Print)1097-6256
Hsieh, C. L., Sturm, R., Herr, W., Francke, U. (April 1990) The gene for the ubiquitous octamer-binding protein Oct-1 is on human chromosome 1, region cen-q32, and near Ly-22 and Ltw-4 on mouse chromosome 1. Genomics, 6 (4). pp. 666-672. ISSN 0888-7543
Hu, W., Feng, Z., Atwal, G. S., Levine, A. J. (April 2008) p53: a new player in reproduction. Cell Cycle, 7 (7). pp. 848-52. ISSN 1551-4005 (Electronic)1551-4005 (Linking)
Hu, Ying, Colantonio, Vincent, Müller, Bárbara SF, Leach, Kristen A, Nanni, Adalena, Finegan, Christina, Wang, Bo, Baseggio, Matheus, Newton, Carter J, Juhl, Emily M, Hislop, Lillian, Gonzalez, Juan M, Rios, Esteban F, Hannah, L Curtis, Swarts, Kelly, Gore, Michael A, Hennen-Bierwagen, Tracie A, Myers, Alan M, Settles, A Mark, Tracy, William F, Resende, Marcio FR (February 2021) Genome assembly and population genomic analysis provide insights into the evolution of modern sweet corn. Nature Communications, 12 (1). p. 1227. ISSN 2041-1723
Huang, Y. H., Klingbeil, O., He, X. Y., Wu, X. S., Arun, G., Lu, B., Somerville, T. D. D., Milazzo, J. P., Wilkinson, J. E., Demerdash, O. E., Spector, D. L., Egeblad, M., Shi, J., Vakoc, C. R. (July 2018) POU2F3 is a master regulator of a tuft cell-like variant of small cell lung cancer. Genes Dev, 32 (13-14). pp. 915-928. ISSN 0890-9369
Hudson, J. D., Shoaibi, M. A., Maestro, R., Carnero, A., Hannon, G. J., Beach, D. H. (1999) A proinflammatory cytokine inhibits p53 tumor suppressor activity. Journal of Experimental Medicine, 190 (10). pp. 1375-1382. ISSN 00221007 (ISSN)
Humbey, O., Pimkina, J., Zilfou, J. T., Jarnik, M., Dominguez-Brauer, C., Burgess, D. J., Eischen, C. M., Murphy, M. E. (December 2008) The ARF Tumor Suppressor Can Promote the Progression of Some Tumors. Cancer Res, 68 (23). pp. 9608-9613.
Humpton, T. J., Alagesan, B., DeNicola, G. M., Lu, D., Yordanov, G. N., Leonhardt, C. S., Yao, M. A., Alagesan, P., Zaatari, M. N., Park, Y., Skepper, J. N., Macleod, K. F., Perez-Mancera, P. A., Murphy, M. P., Evan, G. I., Vousden, K. H., Tuveson, D. A. (July 2019) Oncogenic Kras induces Nix-mediated mitophagy to promote pancreatic cancer. Cancer Discov, 99 (9). pp. 1268-1298. ISSN 2159-8274
Hung, H. Y., Shannon, L. M., Tian, F., Bradbury, P. J., Chen, C., Flint-Garcia, S. A., McMullen, M. D., Ware, D., Buckler, E. S., Doebley, J. F., Holland, J. B. (July 2012) ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proceedings of the National Academy of Sciences of the United States of America, 109 (28). E1913-E1921. ISSN 0027-8424
Huttly, A. K., Martienssen, R. A., Baulcombe, D. C. (1988) Sequence heterogeneity and differential expression of the alpha-Amy2 gene family in wheat. Mol Gen Genet, 214 (2). pp. 232-240. ISSN 0026-8925
I
Iossifov, I., Levy, D., Allen, J., Ye, K., Ronemus, M., Lee, Y. H., Yamrom, B., Wigler, M. (September 2015) Low load for disruptive mutations in autism genes and their biased transmission. Proc Natl Acad Sci U S A. ISSN 1091-6490 (Electronic)0027-8424 (Linking)
Iossifov, I., Rodriguez-Esteban, R., Mayzus, I., Millen, K. J., Rzhetsky, A. (November 2009) Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput Biol, 5 (11). e1000559.
Iossifov, I., Ronemus, M., Levy, D., Wang, Z. H., Hakker, I., Rosenbaum, J., Yamrom, B., Lee, Y. H., Narzisi, G., Leotta, A., Kendall, J., Grabowska, E., Ma, B. C., Marks, S., Rodgers, L., Stepansky, A., Troge, J., Andrews, P., Bekritsky, M., Pradhan, K., Ghiban, E., Kramer, M., Parla, J., Demeter, R., Fulton, L. L., Fulton, R. S., Magrini, V. J., Ye, K., Darnell, J. C., Darnell, R. B., Mardis, E. R., Wilson, R. K., Schatz, M. C., McCombie, W. R., Wigler, M. (April 2012) De Novo Gene Disruptions in Children on the Autistic Spectrum. Neuron, 74 (2). pp. 285-299. ISSN 0896-6273
Issa, G. C., Delmore, J. E., McKeown, M. R., Lemieux, M. E., Rahl, P. B., Jacobs, H. M., Kastritis, E., Gilpatrick, T., Paranal, R. M., Qi, J., Shi, J. W., Chesi, M., Schinzel, A. C., Vakoc, C. R., Bergsagel, P. L., Richardson, P. G., Young, R., Hahn, W. C., Ghobrial, I. M., Anderson, K. C., Kung, A. L., Mitsiades, C. S., Bradner, J. E. (November 2011) Inhibition of c-Myc Expression and Function in Hematologic Malignancies. Blood, 118 (21). p. 1409. ISSN 0006-4971
Ivy, J. M., Hicks, J. B., Klar, A. J. (December 1985) Map positions of yeast genes SIR1, SIR3 and SIR4. Genetics, 111 (4). pp. 735-44. ISSN 0016-6731 (Print)0016-6731 (Linking)
Ivy, J. M., Klar, A. J. S., Hicks, J. B. (1986) Cloning and characterization of four SIR genes of Saccharomyces cerevisiae. Molecular and Cellular Biology, 6 (2). pp. 688-702. ISSN 02707306 (ISSN)
Izaurralde, Elisa , Spector, David L. (June 2004) Nucleus and gene expression: The interplay of transcriptional mechanisms that regulate gene and post-transcriptional expression. Current Opinion in Cell Biology, 16 (3). pp. 219-222. ISSN 0955-0674
J
Jackson, D., Veit, B., Hake, S. (February 1994) Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot. Development, 120 (2). pp. 405-413.
Jaiswal, P., Ware, D., Ni, J. J., Chang, K., Zhao, W., Schmidt, S., Pan, X. K., Clark, K., Teytelman, L., Cartinhour, S., Stein, L., McCouch, S. (April 2002) Gramene: development and integration of trait and gene ontologies for rice. Comparative and Functional Genomics, 3 (2). pp. 132-136. ISSN 1531-6912
Janas, J. A., Van Aelst, L. (May 2011) Oncogenic tyrosine kinases target Dok-1 for ubiquitin-mediated proteasomal degradation to promote cell transformation. Molecular and Cellular Biology, 31 (13). pp. 2552-2565. ISSN 0270-7306
Janicki, S. M., Tsukamoto, T., Salghetti, S. E., Tansey, W. P., Sachidanandam, R., Prasanth, K. V. , Ried, T., Shav-Tal, Y., Bertrand, E., Singer, R. H., Spector, D. L. (March 2004) From silencing to gene expression: real-time analysis in single cells. Cell, 116 (5). pp. 683-98. ISSN 0092-8674 (Print)
Je, B. I., Gruel, J., Lee, Y. K., Bommert, P., Arevalo, E. D., Eveland, A. L., Wu, Q., Goldshmidt, A., Meeley, R., Bartlett, M., Komatsu, M., Sakai, H., Jonsson, H., Jackson, D. (July 2016) Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits. Nat Genet, 48 (7). pp. 785-791. ISSN 1546-1718 (Electronic)1061-4036 (Linking) (Public Dataset)
Je, B. I., Xu, F., Wu, Q., Liu, L., Meeley, R., Gallagher, J. P., Corcilius, L., Payne, R. J., Bartlett, M. E., Jackson, D. (March 2018) The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors. Elife, 7. ISSN 2050-084x
Jia, H., Li, M., Li, W., Liu, L., Jian, Y., Yang, Z., Shen, X., Ning, Q., Du, Y., Zhao, R., Jackson, D., Yang, X., Zhang, Z. (February 2020) A Serine/Threonine Protein Kinase Encoding Gene KERNEL NUMBER PER ROW6 Regulates Maize Grain Yield. Nature Communications, 11 (988). pp. 1-11. ISSN 2041-1723 (Public Dataset)
Jiao, Y. P., Burow, G., Gladman, N., Acosta-Martinez, V., Chen, J. P., Burke, J., Ware, D., Xin, Z. G. (January 2018) Efficient Identification of Causal Mutations through Sequencing of Bulked F-2 from Two Allelic Bloomless Mutants of Sorghum bicolor. Frontiers in Plant Science, 8. p. 2267. ISSN 1664-462X
Johansen, Nelson J, Kempynck, Niklas, Zemke, Nathan R, Somasundaram, Saroja, Winter, Seppe De, Hooper, Marcus, Dwivedi, Deepanjali, Lohia, Ruchi, Wehbe, Fabien, Li, Bocheng, Abaffyová, Darina, Armand, Ethan J, Man, Julie De, Eksi, Eren Can, Hecker, Nikolai, Hulselmans, Gert, Konstantakos, Vasilis, Mauduit, David, Mich, John K, Partel, Gabriele, Daigle, Tanya L, Levi, Boaz P, Zhang, Kai, Tanaka, Yoshiaki, Gillis, Jesse, Ting, Jonathan T, Ben-Simon, Yoav, Miller, Jeremy, Ecker, Joseph R, Ren, Bing, Aerts, Stein, Lein, Ed S, Tasic, Bosiljka, Bakken, Trygve E (August 2024) Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex. bioRxiv. (Submitted)
Jones, L., Sevcikova, S., Phan, V., Jain, S., Shieh, A., Dubansky, J., Li, M., Maunakea, M. L., Zhu, G., Tennant, T. R., Lowe, S. W., Le Beau, M. M., Kogan, S. C. (November 2008) Myc Drives Chromosomal Gain in Acute Myeloid Leukemia. Blood, 112 (11). p. 294. ISSN 0006-4971
Jordan, Shawn (2016) David Spector: Coordinating gene expression in space and time. The Journal of Cell Biology, 214 (7). pp. 786-787.
K
Kaaij, L. T. J., van de Wetering, M., Fang, F., Decato, B., Molaro, A., van de Werken, H. J. G., van Es, J. H., Schuijers, J., de Wit, E., de Laat, W., Hannon, G. J., Clevers, H. C., Smith, A. D., Ketting, R. F. (2013) DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus. Genome Biology, 14 (5). ISSN 1465-6906
Kang, H. J., Feng, Z., Sun, Y., Atwal, G., Murphy, M. E., Rebbeck, T. R., Rosenwaks, Z., Levine, A. J., Hu, W. (June 2009) Single-nucleotide polymorphisms in the p53 pathway regulate fertility in humans. Proc Natl Acad Sci U S A, 106 (24). pp. 9761-6. ISSN 1091-6490 (Electronic)0027-8424 (Linking)
Kang, Y. J., Lee, Y. K., Kim, I. J. (October 2019) Identification of Differentially Up-regulated Genes in Apple with White Rot Disease. Plant Pathol J, 35 (5). pp. 530-537. ISSN 1598-2254 (Print)1598-2254
Kang, Min-Sung, Kim, Yong Jun, Heo, Jung, Rajendran, Sujeevan, Wang, Xingang, Bae, Jong Hyang, Lippman, Zachary, Park, Soon Ju (June 2022) Newly Discovered Alleles of the Tomato Antiflorigen Gene SELF PRUNING Provide a Range of Plant Compactness and Yield. International Journal of Molecular Sciences, 23 (13). p. 7149. ISSN 1661-6596
Karginov, F. V., Hannon, G. J. (July 2013) Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates. Genes and Development, 27 (14). pp. 1624-32. ISSN 08909369 (ISSN)
Karni-Schmidt, O., Castillo-Martin, M., HuaiShen, T., Gladoun, N., Domingo-Domenech, J., Sanchez-Carbayo, M., Li, Y., Lowe, S. W., Prives, C., Cordon-Cardo, C. (2011) Distinct Expression Profiles of p63 Variants during Urothelial Development and Bladder Cancer Progression. The American Journal of Pathology, 178 (3). pp. 1350-1360. ISSN 0002-9440
Kaufmann, Berwind Petersen, Gay, Helen (1948) The modifying action of near infrared radiation on the frequency of induced gene and chromosomal changes in Drosophila melanogaster. Genetics, 33. p. 112.
Kel, A. E., Kel-Margoulis, O. V., Farnham, P. J., Bartley, S. M., Wingender, E., Zhang, M. Q. (May 2001) Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors. Journal of Molecular Biology, 309 (1). pp. 99-120. ISSN 0022-2836
Kennedy, Margaret C, Lowe, Scott W (March 2022) Mutant p53: it's not all one and the same. Cell Death and Differentiation. ISSN 1350-9047
Keyes, W. M., Mills, A. A. (February 2006) p63: a new link between senescence and aging. Cell Cycle, 5 (3). pp. 260-265. ISSN 15384101
Keyes, W. M. , Pecoraro, M., Aranda, V., Vernersson-Lindahl, E., Li, W., Vogel, H., Guo, X., Garcia, E. L., Michurina, T. V., Enikolopov, G. N., Muthuswamy, S. K., Mills, A. A. (February 2011) DeltaNp63alpha Is an Oncogene that Targets Chromatin Remodeler Lsh to Drive Skin Stem Cell Proliferation and Tumorigenesis. Cell Stem Cell, 8 (2). pp. 164-76. ISSN 1875-9777 (Electronic)
Khouider, Souraya, Borges, Filipe, LeBlanc, Chantal, Ungru, Alexander, Schnittger, Arp, Martienssen, Robert, Colot, Vincent, Bouyer, Daniel (January 2021) Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications, 12 (1). p. 410. ISSN 2041-1723
Kim, S. H., Kwon, C. T., Song, G., Koh, H. J., An, G., Paek, N. C. (January 2018) The rice zebra3 (z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves. Rice (N Y), 11 (1). p. 1. ISSN 1939-8425 (Print)1939-8425
Kim, S. Y., Cordeiro, M. H., Serna, V. A., Ebbert, K., Butler, L. M., Sinha, S., Mills, A. A., Woodruff, T. K., Kurita, T. (August 2013) Rescue of platinum-damaged oocytes from programmed cell death through inactivation of the p53 family signaling network. Cell Death and Differentiation, 20 (8). pp. 987-997.
Kim, S. Y., Herbst, A., Tworkowski, K. A., Salghetti, S. E., Tansey, W. P. (May 2003) Skp2 regulates Myc protein stability and activity. Molecular Cell, 11 (5). pp. 1177-1188. ISSN 1097-2765
King, Bryan, Trimarchi, Thomas, Reavie, Linsey, Xu, Luyao, Mullenders, Jasper, Ntziachristos, Panagiotis, Aranda-Orgilles, Beatriz, Perez-Garcia, Arianne, Shi, Junwei, Vakoc, Christopher, Sandy, Peter, Shen, Steven S, Ferrando, Adolfo, Aifantis, Iannis (June 2013) The Ubiquitin Ligase FBXW7 Modulates Leukemia-Initiating Cell Activity by Regulating MYC Stability. Cell, 153 (7). pp. 1552-1566. ISSN 0092-8674
King, James C. (1955) Integration of the gene pool as demonstrated by resistance to DDT. The American Naturalist , 89 (844). pp. 39-46.
Kinney, Brian, Sahu, Shubham, Stec, Natalia, Hills-Muckey, Kelly, Adams, Dexter W, Wang, Jing, Jaremko, Matt, Joshua-Tor, Leemor, Keil, Wolfgang, Hammell, Christopher M (August 2023) A circadian-like gene network programs the timing and dosage of heterochronic miRNA transcription during C. elegans development. Developmental Cell. S1534-5807(23)00402. ISSN 1534-5807
Kitzing, T., Xue, W., Roessler, S., Krasnitz, A., Schultz, N., Wang, X. W., Wigler, M., Lowe, S. W. (July 2012) Cooperating Tumor Suppressor Genes on Chromosome 8p Predict Survival Outcome in Hepatocellular Carcinoma. European Journal of Cancer, 48. S139-S139. ISSN 0959-8049
Klar, A. J. (May 1990) The developmental fate of fission yeast cells is determined by the pattern of inheritance of parental and grandparental DNA strands. EMBO J, 9 (5). pp. 1407-15. ISSN 0261-4189 (Print)0261-4189 (Linking)
Klar, A. J., Fogel, S. (September 1979) Activation of mating type genes by transposition in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A, 76 (9). pp. 4539-43. ISSN 0027-8424 (Print)0027-8424 (Linking)
Klar, A. J., Fogel, S., Lusnak, K. (July 1979) Gene conversion of the mating-type locus in Saccharomyces cerevisiae. Genetics, 92 (3). pp. 777-82. ISSN 0016-6731 (Print)0016-6731 (Linking)
Klar, A. J., Fogel, S., Macleod, K. (September 1979) MAR1-a Regulator of the HMa and HMalpha Loci in SACCHAROMYCES CEREVISIAE. Genetics, 93 (1). pp. 37-50. ISSN 0016-6731 (Print)0016-6731 (Linking)
Klar, A. J., Fogel, S., Radin, D. N. (July 1979) Switching of a mating-type a mutant allele in budding yeast Saccharomyces cerevisiae. Genetics, 92 (3). pp. 759-76. ISSN 0016-6731 (Print)0016-6731 (Linking)
Klar, A. J., Hicks, J. B., Strathern, J. N. (1981) Irregular transpositions of mating-type genes in yeast. Cold Spring Harbor Symposia on Quantitative Biology, 45 Pt . pp. 983-990. ISSN 00917451 (ISSN)
Klar, A. J., McIndoo, J., Strathern, J. N., Hicks, J. B. (1980) Evidence for a physical interaction between the transposed and the substituted sequences during mating type gene transposition in yeast. Cell, 22 (1 I). pp. 291-298.
Klar, A. J. S., Bonaduce, M. J., Cafferkey, R. (March 1991) The mechanism of fission yeast mating type interconversion: seal/replicate/cleave model of replication across the double-stranded break site at mat1. Genetics, 127 (3). pp. 489-496. ISSN 0016-6731
Klar, A. J. S., Kakar, S. N., Ivy, J. M., Hicks, J. B., Livi, G. P., Miglio, L. M. (1985) SUM1, an apparent positive regulator of the cryptic mating-type loci in Saccharomyces cerevisiae. Genetics, 111 (4). pp. 745-748. ISSN 00166731 (ISSN)
Klar, A. J. S., McIndoo, J., Hicks, J. B., Strathern, J. N. (1980) Precise mapping of the homothallism genes HML and HMR in Saccharomyces cerevisiae. Genetics, 96 (2). pp. 315-320. ISSN 00166731 (ISSN)
Klar, A. J. S., Strathern, J. N., Hicks, J. B. (1981) A position-effect control for gene transposition: State of expression of yeast mating-type genes affects their ability to switch. Cell, 25 (2). pp. 517-524.
Klein, Harry, Gallagher, Joseph, Demesa-Arevalo, Edgar, Abraham-Juárez, María Jazmín, Heeney, Michelle, Feil, Regina, Lunn, John E, Xiao, Yuguo, Chuck, George, Whipple, Clinton, Jackson, David, Bartlett, Madelaine (January 2022) Recruitment of an ancient branching program to suppress carpel development in maize flowers. Proceedings of the National Academy of Sciences of USA, 119 (2). e2115871119-e2115871119. ISSN 0027-8424
Klessig, D. F., Grodzicker, T. (1979) Mutations that allow human Ad2 and Ad5 to express late genes in monkey cells map in the viral gene encoding the 72K DNA binding protein. Cell, 17 (4). pp. 957-966.
Kline, A. D., Krantz, I. D., Bando, M., Shirahige, K., Chea, S., Sakata, T., Rao, S., Dorsett, D., Singh, V. P., Gerton, J. L., Horsfield, J. A., Calof, A. L., Katz, O., Grados, M., Raible, S., Baranano, K., Lyon, G., Musio, A., Carrico, C. S., Clemens, D. K., Caudill, P., Massa, V., McGill, B. E., Dommestrup, A., O'Connor, J., Haaland, R. E. (March 2019) Cornelia de Lange syndrome, related disorders, and the Cohesin complex: Abstracts from the 8th biennial scientific and educational symposium 2018. Am J Med Genet A, 179 (6). pp. 1080-1090. ISSN 1552-4825
Kolsch, H., Jessen, F., Wiltfang, J., Lewczuk, P., Dichgans, M., Teipel, S. J., Kornhuber, J., Frolich, L., Heuser, I., Peters, O., Wiese, B., Kaduszkiewicz, H., van den Bussche, H., Hull, M., Kurz, A., Ruther, E., Henn, F. A., Maier, W. (April 2009) Association of SORL1 gene variants with Alzheimer's disease. Brain Research, 1264. pp. 1-6. ISSN 0006-8993 (Print)0006-8993 (Linking)
Kondo, S., Lu, Y., Debbas, M., Lin, A. W., Sarosi, I., Itie, A., Wakeham, A., Tuan, J., Saris, C., Elliott, G., Ma, W. L., Benchimol, S., Lowe, S. W., Mak, T. W., Thukral, S. K. (April 2003) Characterization of cells and gene-targeted mice deficient for the p53-binding kinase homeodomain-interacting protein kinase 1 (HIPK1). Proceedings of the National Academy of Sciences of the United States of America, 100 (9). pp. 5431-5436. ISSN 0027-8424
Kondo, S., Vedanayagam, J., Mohammed, J., Eizadshenass, S., Kan, L., Pang, N., Aradhya, R., Siepel, A., Steinhauer, J., Lai, E. C. (September 2017) New genes often acquire male-specific functions but rarely become essential in Drosophila. Genes Dev, 31 (18). pp. 1841-1846. ISSN 0890-9369
Koumenis, C., Alarcon, R., Hammond, E., Sutphin, P., Hoffman, W., Murphy, M., Derr, J., Taya, Y., Lowe, S. W., Kastan, M., Giaccia, A. (February 2001) Regulation of p53 by hypoxia: Dissociation of transcriptional repression and apoptosis from p53-dependent transactivation. Molecular and Cellular Biology, 21 (4). pp. 1297-1310. ISSN 0270-7306
Krainer, A. R., Mayeda, A., Kozak, D., Binns, G. (July 1991) Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators. Cell, 66 (2). pp. 383-394. ISSN 0092-8674
Krishnan, K., Lau, B. Y., Ewall, G., Huang, Z. J., Shea, S. D. (January 2017) MECP2 regulates cortical plasticity underlying a learned behaviour in adult female mice. Nat Commun, 8. p. 14077. ISSN 2041-1723 (Electronic)2041-1723 (Linking)
Krishnan, K., Salomonis, N., Guo, S. (November 2008) Identification of Spt5 Target Genes in Zebrafish Development Reveals Its Dual Activity In Vivo. PLoS ONE, 3 (11). e3621.
Krizhanovsky, V., Lowe, S. W. (2009) Stem cells: The promises and perils of p53. Nature, 460 (7259). pp. 1085-1086.
Kubota, T., Roca, X., Kimura, T., Kokunai, Y., Nishino, I., Sakoda, S., Krainer, A. R., Takahashi, M. P. (July 2011) A mutation in a rare type of intron in a sodium-channel gene results in aberrant splicing and causes myotonia. Human Mutation, 32 (7). pp. 773-782. ISSN 10597794 (ISSN)
Kumar, Rajeev, Conklin, Douglas S., Mittal, Vivek (October 2003) High-throughput selection of effective RNAi probes for gene silencing. Genome Research, 13 (10). pp. 2333-2340. ISSN 1088-9051
Kurland, J. F., Tansey, W. P. (May 2008) Myc-mediated transcriptional repression by recruitment of histone deacetylase. Cancer Res, 68 (10). pp. 3624-9.
Kuzin, B. A., Nikitina, E. A., Cherezov, R. O., Vorontsova, J. E., Slezinger, M. S., Zatsepina, O. G., Simonova, O. B., Enikolopov, G. N., Savvateeva-Popova, E. V. (April 2014) Combination of hypomorphic mutations of the Drosophila homologues of aryl hydrocarbon receptor and nucleosome assembly protein family genes disrupts morphogenesis, memory and detoxification. PLoS ONE, 9 (4). e94975. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Kwoh, T. J., Zipser, D., Wigler, M. H. (1983) Mutational analysis of the cloned chicken thymidine kinase gene. J Mol Appl Genet, 2 (2). pp. 191-200. ISSN 0271-6801 (Print)
Kwon-Chung, K. J., Riggsby, W. S., Uphoff, R. A., Hicks, J. B., Whelan, W. L., Reiss, E., Magee, B. B., Wickes, B. L. (1989) Genetic differences between type I and type II Candida stellatoidea. Infection and Immunity, 57 (2). pp. 527-532. ISSN 00199567 (ISSN)
L
Labbé, D. P., Nowak, D. G., Deblois, G., Lessard, L., Giguère, V., Trotman, L. C., Tremblay, M. L. (2014) Prostate cancer genetic-susceptibility locus on chromosome 20q13 is amplified and coupled to androgen receptor-regulation in metastatic tumors. Molecular Cancer Research, 12 (2). pp. 184-189. ISSN 15417786 (ISSN)
Lacroix, B., Gizatullina, D. I., Babst, B. A., Gifford, A. N., Citovsky, V. (April 2014) AgrobacteriumT-DNA-encoded protein Atu6002 interferes with the host auxin response. Molecular Plant Pathology, 15 (3). pp. 275-283. ISSN 14646722 (ISSN)
Lam, Siew Hong, Wu, Yi Lian, Vega, Vinsensius B, Miller, Lance D, Spitsbergen, Jan, Tong, Yan, Zhan, Huiqing, Govindarajan, Kunde R, Lee, Serene, Mathavan, Sinnakarupan, Murthy, Karuturi R Krishna, Buhler, Donald R, Liu, Edison T, Gong, Zhiyuan (January 2006) Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression. Nature Biotechnology, 24 (1). pp. 73-75. ISSN 1087-0156
Lanctot, Amy (January 2024) On the cutting edge of development: Laser-assisted microdissection of the Arabidopsis gynoecium reveals tissue-specific gene expression patterns. Plant Physiology. ISSN 0032-0889
Laronda, Monica M., Unno, Kenji, Ishi, Kazutomo, Serna, Vanida A., Butler, Lindsey M., Mills, Alea A., Orvis, Grant D., Behringer, Richard R., Deng, Chuxia, Sinha, Satrajit, Kurita, Takeshi (July 2013) Diethylstilbestrol induces vaginal adenosis by disrupting SMAD/RUNX1-mediated cell fate decision in the Müllerian duct epithelium. Developmental Biology, 381 (1). pp. 5-16. ISSN 0012-1606
Laska, M. J., Lowe, S. W., Zender, L., Hearn, S. A., Vogel, U., Jensen, U. B., Bric, A., Nexo, B. A. (September 2009) Enforced expression of PPP1R13L increases tumorigenesis and invasion through p53-dependent and p53-independent mechanisms. Mol Carcinog, 48 (9). pp. 832-42.
Laspia, M. F., Rice, A. P., Mathews, M. B. (December 1990) Synergy between HIV-1 Tat and adenovirus E1A is principally due to stabilization of transcriptional elongation. Genes Dev, 4 (12B). pp. 2397-408. ISSN 0890-9369 (Print)0890-9369 (Linking)
Lau, B. Y. B., Krishnan, K., Huang, Z. J., Shea, S. D. (January 2020) Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires MECP2. J Neurosci, 40 (7). pp. 1514-1526. ISSN 0270-6474
Laubscher, Dominik, Gryder, Berkley E, Sunkel, Benjamin D, Andresson, Thorkell, Wachtel, Marco, Das, Sudipto, Roschitzki, Bernd, Wolski, Witold, Wu, Xiaoli S, Chou, Hsien-Chao, Song, Young K, Wang, Chaoyu, Wei, Jun S, Wang, Meng, Wen, Xinyu, Ngo, Quy Ai, Marques, Joana G, Vakoc, Christopher R, Schäfer, Beat W, Stanton, Benjamin Z, Khan, Javed (November 2021) BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma. Nature Communications, 12 (1). p. 6924. ISSN 2041-1723
Lebedeff, G. A. (1932) Interaction of ruffled and rounded genes of Drosophila virilis. Proceedings of the National Academy of Sciences, 18 (5). pp. 343-349.
Lee, YK, Olson, A, Kim, K, Ohme-Takagi, M, Ware, D (January 2023) HB31 and HB21 regulate floral architecture through miRNA396/GRF modules in Arabidopsis. Plant Biotechnology Reports. ISSN 1863-5466
Lee, C. H., Yu, J. R., Granat, J., Saldana-Meyer, R., Andrade, J., LeRoy, G., Jin, Y., Lund, P., Stafford, J. M., Garcia, B. A., Ueberheide, B., Reinberg, D. (September 2019) Automethylation of PRC2 promotes H3K27 methylation and is impaired in H3K27M pediatric glioma. Genes Dev, 33 (19-20). pp. 1428-1440. ISSN 0890-9369
Lee, C. S., Lee, L. C., Yuan, T. L., Chakka, S., Fellmann, C., Lowe, S. W., Caplen, N. J., McCormick, F., Luo, J. (February 2019) MAP kinase and autophagy pathways cooperate to maintain RAS mutant cancer cell survival. Proc Natl Acad Sci U S A, 116 (10). pp. 4508-4517. ISSN 0027-8424
Lee, J. H., Park, I. H., Gao, Y., Li, J. B., Li, Z., Daley, G. Q., Zhang, K., Church, G. M. (November 2009) A robust approach to identifying tissue-specific gene expression regulatory variants using personalized human induced pluripotent stem cells. PLoS Genet, 5 (11). e1000718. ISSN 1553-7404 (Electronic)1553-7390 (Linking)
Lee, Bernett, Cyrill, Samantha Leeanne, Lee, Wendy, Melchiotti, Rossella, Andiappan, Anand Kumar, Poidinger, Michael, Rötzschke, Olaf (August 2022) Analysis of archaic human haplotypes suggests that 5hmC acts as an epigenetic guide for NCO recombination. BMC Biology, 20 (1). p. 173. ISSN 1741-7007
Lee, Seung Cho, Martienssen, Robert A (September 2021) Regulation of retrotransposition in Arabidopsis. Biochemical Society Transactions. ISSN 0300-5127
Lees-Miller, J. P., Helfman, D. M. (1991) Identification and Analysis of an Essential Gene Encoding a Distinctive Actin-Like Protein from Schizosaccharomyces-Pombe. Journal of Cell Biology, 115 (3 PART). 159A.
Lees-Miller, J. P., Henry, G., Helfman, D. M. (January 1992) Identification of act2, an essential gene in the fission yeast Schizosaccharomyces pombe that encodes a protein related to actin. Proc Natl Acad Sci U S A, 89 (1). pp. 80-3. ISSN 0027-8424 (Print)0027-8424 (Linking)
Lees-Miller, J. P., Yan, A., Helfman, D. M. (June 1990) Structure and complete nucleotide sequence of the gene encoding rat fibroblast tropomyosin 4. J Mol Biol, 213 (3). pp. 399-405. ISSN 0022-2836 (Print)0022-2836 (Linking)
Li, Zhen, Huang, Xiaoqian, Zhan, Huiqing, Zeng, Zhiqiang, Li, Caixia, Spitsbergen, Jan M, Meierjohann, Svenja, Schartl, Manfred, Gong, Zhiyuan (February 2012) Inducible and repressable oncogene-addicted hepatocellular carcinoma in Tet-on xmrk transgenic zebrafish. Journal of Hepatology, 56 (2). pp. 419-425. ISSN 0168-8278
Li, Zhen, Zheng, Weiling, Wang, Zhengyuan, Zeng, Zhiqiang, Zhan, Huiqing, Li, Caixia, Zhou, Li, Yan, Chuan, Spitsbergen, Jan M, Gong, Zhiyuan (March 2013) A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. DMM Disease Models and Mechanisms, 6 (2). pp. 414-423. ISSN 1754-8403
Li, B. (March 2011) SYNAPTIC AND CIRCUITRY MECHANISMS UNDERLYING COGNITIVE ABERRATIONS IN MICE DEFICIENT IN GENES LINKED TO SCHIZOPHRENIA. Schizophrenia Bulletin, 37. p. 37. ISSN 1745-1701
Li, F., Goto, D. B., Zaratiegui, M., Tang, X., Martienssen, R., Cande, W. Z. (August 2005) Two novel proteins, Dos1 and Dos2, interact with Rik1 to regulate heterochromatic RNA interference and histone modification. Current Biology, 15 (16). pp. 1448-1457. ISSN 0960-9822
Li, L., Petsch, K., Shimizu, R., Liu, S., Xu, W. W., Ying, K., Yu, J., Scanlon, M. J., Schnable, P. S., Timmermans, M. C. P., Springer, N. M., Muehlbauer, G. J. (January 2013) Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. PLoS Genetics, 9 (1). Article number e1003202. ISSN 15537390 (ISSN)
Li, T., Huang, J., Jiang, Y., Zeng, Y., He, F., Zhang, M. Q., Han, Z., Zhang, X. (March 2009) Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development. Genomics, 93 (3). pp. 235-242.
Li, Y., Brooks, M., Yeoh-Wang, J., McCoy, R. M., Rock, T. M., Pasquino, A., Moon, C. I., Patrick, R. M., Tanurdzic, M., Ruffel, S., Widhalm, J. R., McCombie, W. R., Coruzzi, G. M. (October 2019) SDG8-mediated histone methylation and RNA processing function in the response to nitrate signaling. Plant Physiol. ISSN 0032-0889
Li, Y., Welm, B., Podsypanina, K., Huang, S., Chamorro, M., Zhang, X., Rowlands, T., Egeblad, M., Cowin, P., Werb, Z., Tan, L. K., Rosen, J. M., Varmus, H. E. (2003) Evidence that transgenes encoding components of the Wnt signaling pathway preferentially induce mammary cancers from progenitor cells. Proceedings of the National Academy of Sciences of the United States of America, 100 (26). pp. 15853-15858. ISSN 00278424 (ISSN)
Li, Z. R., Van Calcar, S., Qu, C. X., Cavenee, W. K., Zhang, M. Q., Ren, B. (July 2003) A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells. Proceedings of the National Academy of Sciences of the United States of America, 100 (14). pp. 8164-8169. ISSN 0027-8424
Li, Bing, An, Wenbin, Wang, Hua, Baslan, Timour, Mowla, Shoron, Krishnan, Aishwarya, Xiao, Wenbin, Koche, Richard Patrick, Liu, Ying, Cai, Sheng F, Xiao, Zhijian, Derkach, Andriy, Iacobucci, Ilaria, Mullighan, Charles G, Helin, Kristian, Lowe, Scott W, Levine, Ross L, Rampal, Raajit K (April 2022) BMP2/SMAD pathway activation in JAK2/p53-mutant Megakaryocyte/Erythroid Progenitors Promotes Leukemic Transformation. Blood. ISSN 0006-4971
Li, Rong, Hannon, G. J., Beach, D., Stillman, B. (1996) Subcellular distribution of p21 and PCNA in normal and repair-deficient cells following DNA damage. Current Biology, 6 (2). pp. 189-199. ISSN 09609822 (ISSN)
Liang, C., Mao, L., Ware, D. H., Stein, L. D. (October 2009) Evidence-based gene predictions in plant genomes. Genome Res, 19 (10). 1912-1923 .
Liao, S. C., Hsu, H. W., Chuang, K. L., Huang, Z. Y., Lin, K. T., Hsu, W. H., Chang, K. H., Huang, C. F., Su, C. L. (June 2019) Using the Pleiotropic Characteristics of Curcumin to Validate the Potential Application of a Novel Gene Expression Screening Platform. Nutrients, 11 (6). ISSN 2072-6643
Liberatore, Katie (April 2014) Investigating the roles of gene dosage and stem cell maintenance in the regulation of plant shoot and inflorescence architecture. PhD thesis, Cold Spring Harbor Laboratory.
Lin, A. W., Barradas, M., Stone, J. C., Van Aelst, L., Serrano, M., Lowe, S. W. (October 1998) Premature senescence involving p53 and p16 is activated in response to constitutive MEK/MAPK mitogenic signaling. Genes & Development, 12 (19). pp. 3008-3019. ISSN 0890-9369
Lin, A. W., Lowe, S. W. (April 2001) Oncogenic ras activates the ARF-p53 pathway to suppress epithelial cell transformation. Proceedings of the National Academy of Sciences of the United States of America, 98 (9). pp. 5025-5030. ISSN 0027-8424
Lin, C. J., Nasr, Z., Premsrirut, P. K., Porco Jr, J. A., Hippo, Y., Lowe, S. W., Pelletier, J. (April 2012) Targeting Synthetic Lethal Interactions between Myc and the eIF4F Complex Impedes Tumorigenesis. Cell Reports, 1 (4). pp. 325-333. ISSN 2211-1247
Lindbäck, Louise N, Hu, Yuzhao, Ackermann, Amanda, Artz, Oliver, Pedmale, Ullas V (June 2022) UBP12 and UBP13 deubiquitinases destabilize the CRY2 blue light receptor to regulate Arabidopsis growth. Current Biology. ISSN 0960-9822
Lippman, Z. (November 2012) Talk from Zach Lippman at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)
Lira, B. S., Gramegna, G., Trench, B., Alves, F. R. R., Silva, E. M., Silva, G. F. F., Thirumalaikumar, V. P., Lupi, A. C. D., Demarco, D., Purgatto, E., Nogueira, F. T., Balazadeh, S., Freschi, L., Rossi, M. (July 2017) Manipulation of a senescence-associated gene improves fleshy fruit yield. Plant Physiol. ISSN 0032-0889
Liseron-Monfils, Christophe, Ware, Doreen (December 2015) Revealing gene regulation and associations through biological networks. Current Plant Biology, 3-4. pp. 30-39. ISSN 2214-6628
Liu, H. C., Enikolopov, G., Chen, Y. Z. (September 2012) Cul4B regulates neural progenitor cell growth. BMC Neuroscience, 13. p. 13. ISSN 1471-2202
Liu, H. X., Cartegni, L., Zhang, M. Q., Krainer, A. R. (January 2001) A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nature Genetics, 27 (1). pp. 55-58. ISSN 1061-4036
Liu, Q. A., Hengartner, M. O. (June 1998) Candidate adaptor protein CED-6 promotes the engulfment of apoptotic cells in C. elegans. Cell, 93 (6). pp. 961-72. ISSN 0092-8674 (Print)
Livi, G. P., Hicks, J. B., Klar, A. J. S. (1990) The sum1-1 mutation affects silent mating-type gene transcription in Saccharomyces cerevisiae. Molecular and Cellular Biology, 10 (1). pp. 409-412. ISSN 02707306 (ISSN)
Lo Iacono, N., Mantero, S., Chiarelli, A., Garcia, E. L., Mills, A. A., Morasso, M. I., Costanzo, A., Levi, G., Guerrini, L., Merlo, G. R. (April 2008) Regulation of Dlx5 and Dlx6 gene expression by p63 is involved in EEC and SHFM congenital limb defects. Development, 135 (7). pp. 1377-1388. ISSN 0950-1991
Lodha, M., Marco, C. F., Timmermans, M. C. (March 2013) The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2. Genes & Development, 27 (6). pp. 596-601. ISSN 0890-9369
Lohia, Ruchi, Fox, Nathan, Gillis, Jesse (November 2022) A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships. Genome Biology, 23 (1). p. 238. ISSN 1474-760X
Lovén, J., Hoke, H. A, Lin, C. Y., Lau, A. W., Orlando, D. A., Vakoc, C. R., Bradner, J. E., Lee, T. I., Young, R. A. (April 2013) Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers. Cell, 153 (2). pp. 320-334. ISSN 0092-8674
Lowe, C. B., Kellis, M., Siepel, A., Raney, B. J., Clamp, M., Salama, S. R., Kingsley, D. M., Lindblad-Toh, K., Haussler, D. (August 2011) Three periods of regulatory innovation during vertebrate evolution. Science, 333 (6045). pp. 1019-24. ISSN 0036-8075
Lowe, S. (November 2002) Roles of oncogenes and tumor suppressor genes in apoptosis. European Journal of Cancer, 38. S15-S15. ISSN 0959-8049
Lowe, S. W. (July 2008) Dissecting tumor suppressor gene networks in vivo. European Journal of Cancer Supplements, 6 (9). p. 7. ISSN 1359-6349
Lowe, S. W. (October 2002) Premature senescence in tumor suppression. Cancer Epidemiology Biomarkers & Prevention, 11 (10). 1259S-1259S. ISSN 1055-9965
Lu, Guang-An, Zhang, Jinning, Zhao, Yixin, Chen, Qingjian, Lin, Pei, Tang, Tian, Tang, Zhixiong, Wen, Haijun, Liufu, Zhongqi, Wu, Chung-I (January 2023) Canalization of Phenotypes-When the Transcriptome is Constantly but Weakly Perturbed. Molecular Biology and Evolution, 40 (1). msad005. ISSN 0737-4038
Lujambio, A., Akkari, L., Simon, J., Grace, D., Tschaharganeh, D. F., Bolden, J. E., Zhao, Z., Thapar, V., Joyce, J. A., Krizhanovsky, V., Lowe, S. W. (2013) Non-cell-autonomous tumor suppression by p53. Cell, 153 (2). pp. 449-460.
Luke, M. M., Sutton, A., Arndt, K. T. (August 1991) Characterization of SIS1, a Saccharomyces cerevisiae homologue of bacterial dnaJ proteins. J Cell Biol, 114 (4). pp. 623-38. ISSN 0021-9525 (Print)0021-9525 (Linking)
Luo, W., Friedman, M. S., Shedden, K., Hankenson, K. D., Woolf, P. J. (May 2009) GAGE: generally applicable gene set enrichment for pathway analysis. BMC Bioinformatics, 10. p. 161.
Luo, W., Hankenson, K. D., Woolf, P. J. (November 2008) Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information. BMC Bioinformatics, 9. p. 467.
Luo, W. J., Friedman, M. S., Hankenson, K. D., Woolf, P. J. (May 2011) Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. BMC Systems Biology, 5 (82). ISSN 1752-0509
Luo, Y., Yang, Y., Liu, M., Wang, D., Wang, F., Bi, Y., Ji, J., Li, S., Liu, Y., Chen, R., Huang, H., Wang, X., Swidnicka-Siergiejko, A. K., Janowitz, T., Beyaz, S., Wang, G., Xu, S., Bialkowska, A. B., Luo, C. K., Pin, C. L., Liang, G., Lu, X., Wu, M., Shroyer, K. R., Wolff, R. A., Plunkett, W., Ji, B., Li, Z., Li, E., Li, X., Yang, V. W., Logsdon, C. D., Abbruzzese, J. L., Lu, W. (July 2019) Oncogenic KRAS Reduces Expression of FGF21 in Acinar Cells to Promote Pancreatic Tumorigenesis in Mice on a High-Fat Diet. Gastroenterology, 157 (5). ISSN 0016-5085
Lyon, G. J. (May 2015) Discovery and genetic characterization of new neuropsychiatric syndromes from family-based studies. In: Cold Spring Harbor Laboratory: The Biology of Genomes Meeting, Cold Spring Harbor, NY. (Unpublished)
Lyon, G. J. (May 2015) New human genetic syndromes leading to the discovery of new biology. In: Cold Spring Harbor Laboratory: 80th CSHL Symposium on Quantitative Biology – 21st Century Genetics: Genes at Work, Cold Spring Harbor, NY. (Unpublished)
Lyon, G. J. (May 2015) Using next generation sequencing to discover new human genetic syndromes and reveal new biology. In: GTCbio: 5th Next Generation Sequencing Conference, Boston, MA. (Unpublished)
Lyon, Gholson J. (June 2013) The Chaperone-Like Protein HYPK Acts Together with NatA in Cotranslational N-Terminal Acetylation and Prevention of Huntingtin Aggregation. Journal Club. (Unpublished)
Lyon, Gholson J. (September 2015) Variants in TAF1 are associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. In: 17th International Fragile X and Other Early-Onset Cognitive Disorders Workshop, Strasbourg, France. (Unpublished)
Lyon, Gholson J. (October 2015) Variants in TAF1 are associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. In: he American Society of Human Genetics (ASHG) 2015, Baltimore, MD. (Unpublished)
M
Ma, H. (January 1998) To be, or not to be, a flower--control of floral meristem identity. Trends in Genetics, 14 (1). pp. 26-32. ISSN 0168-9525
Ma, O., Cai, W. W., Zender, L., Dayaram, T., Shen, J. H., Herron, A. J., Lowe, S. W., Man, T. K., Lau, C. C., Donehower, L. A. (March 2009) MMP13, Birc2 (cIAP1), and Birc3 (cIAP2), Amplified on Chromosome 9, Collaborate with p53 Deficiency in Mouse Osteosarcoma Progression. Cancer Res, 69 (6). pp. 2559-2567. ISSN 0008-5472
MacAlister, C. A., Bergmann, D. C. (March 2011) Sequence and function of basic helix-loop-helix proteins required for stomatal development in Arabidopsis are deeply conserved in land plants. Evolution & Development, 13 (2). pp. 182-192. ISSN 1520-541X
MacCallum, D. E., Hall, P. A., Wright, E. G. (September 2001) The TRP53 pathway is induced in vivo by low doses of gamma radiation. Radiation Research, 156 (3). pp. 324-327. ISSN 0033-7587
Macalister, C. A., Park, S. J., Jiang, K., Marcel, F., Bendahmane, A., Izkovich, Y., Eshed, Y., Lippman, Z. B. (November 2012) Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene. Nat Genet. ISSN 1546-1718 (Electronic)1061-4036 (Linking)
Maia-Silva, Diogo (March 2023) MECHANISMS OF GENE TRANSCRIPTION BY TP63 AND THE MEDIATOR COMPLEX IN SQUAMOUS PANCREATIC CANCER. PhD thesis, Cold Spring Harbor Laboratory.
Majoros, W. H., Campbell, M. S., Holt, C., DeNardo, E., Ware, D., Allen, A. S., Yandell, M., Reddy, T. E. (May 2017) High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinformatics, 33 (10). pp. 1437-1446. ISSN 1367-4811 (Electronic)1367-4803 (Linking)
Majoros, W. H., Holt, C., Campbell, M. S., Ware, D., Yandell, M., Reddy, T. E. (April 2018) Predicting Gene Structure Changes Resulting from Genetic Variants via Exon Definition Features. Bioinformatics, 34 (21). pp. 3616-3623. ISSN 1367-4803
Maki, R. G., Eddy, R. L., Byers, M., Shows, T. B., Srivastava, P. K. (January 1993) Mapping of the genes for human endoplasmic reticular heat shock protein gp96/grp94. Somat Cell Mol Genet, 19 (1). pp. 73-81. ISSN 0740-7750 (Print)0740-7750 (Linking)
Makrythanasis, P., Kapranov, P., Bartoloni, L., Reymond, A., Deutsch, S., Guigo, R., Denoeud, F., Drenkow, J., Rossier, C., Ariani, F., Capra, V., Excoffier, L., Renieri, A., Gingeras, T. R., Antonarakis, S. E. (September 2009) Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls. Human Mutation, 30 (9). E866-79. ISSN 1059-7794
Man, A. K., Young, L. J. T., Tynan, J. A., Lesperance, J., Egeblad, M., Werb, Z., Hauser, C. A., Muller, W. J., Cardiff, R. D., Oshima, R. G. (2003) Ets2-Dependent Stromal Regulation of Mouse Mammary Tumors. Molecular and Cellular Biology, 23 (23). pp. 8614-8625. ISSN 02707306 (ISSN)
Marshall, M., Mahoney, D., Rose, A., Hicks, J. B., Broach, J. R. (1987) Functional domains of SIR4, a gene required for position effect regulation in Saccharomyces cerevisiae. Molecular and Cellular Biology, 7 (12). pp. 4441-4452. ISSN 02707306 (ISSN)
Martienssen, R. (July 1996) Epigenetic phenomena: Paramutation and gene silencing in plants. Current Biology, 6 (7). pp. 810-813. ISSN 0960-9822
Martienssen, R. (April 1997) Evolutionary biology - The origin of maize branches out. Nature, 386 (6624). 443&445. ISSN 0028-0836
Martienssen, R. (July 1998) Transposons, DNA methylation and gene control. Trends in Genetics, 14 (7). pp. 263-264. ISSN 0168-9525
Martienssen, R. (April 1997) The origin of maize branches out. Nature, 386 (6624). p. 443. ISSN 0028-0836
Martienssen, R., Lippman, Z., May, B., Ronemus, M., Vaughn, M. (2004) Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor symposia on quantitative biology, 69. pp. 371-9. ISSN 0091-7451 (Print)0091-7451 (Linking)
Martienssen, R. A. (March 1998) Functional genomics: Probing plant gene function and expression with transposons. Proceedings of the National Academy of Sciences of the United States of America, 95 (5). pp. 2021-2026. ISSN 0027-8424
Martienssen, R. A., Barkan, A., Freeling, M., Taylor, W. C. (1989) Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. EMBO J, 8 (6). pp. 1633-1639. ISSN 0261-4189
Maturana, Carola J, Verpeut, Jessica L, Kooshkbaghi, Mahdi, Engel, Esteban A (June 2021) Novel tool to quantify with single-cell resolution the number of incoming AAV genomes co-expressed in the mouse nervous system. Gene Therapy (Basingstoke). ISSN 0969-7128
McCarthy, S. E., McCombie, W. R., Corvin, A. (March 2014) Unlocking the Treasure Trove: From Genes to Schizophrenia Biology. Schizophrenia Bulletin, 40 (3). pp. 492-496. ISSN 0586-7614
McClellan, J. M., Walsh, T., McCarthy, S. E., King, M. C., Sebat, J. (August 2008) Gene mutations and cognitive delay. Science, 321 (5889). p. 640. ISSN 0036-8075
McClintock, Barbara (1957) Continued Study of Stability of Location of Spm. Maize Genetics Cooperation News Letter, 31. pp. 31-36.
McClintock, Barbara (December 1947) Cytogenetic studies of maize and Neurospora. In: Annual Report of the Director of the Department of Genetics, Carnegie Institution of Washington Year Book No. 46, 1946-1947. Carnegie Institution of Washington, Cold Spring Harbor, New York, pp. 146-152.
McCombie, W. R., Adams, M. D., Kelley, J. M., FitzGerald, M. G., Utterback, T. R., Khan, M., Dubnick, M., Kerlavage, A. R., Venter, J. C., Fields, C. (1992) Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologues. Nature Genetics, 1 (2). pp. 124-131. ISSN 10614036 (ISSN)
McCombie, W. R., De la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Yordan, C., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Simorowski, J., May, B., Ma, P., Preston, R., Vil, D., Lei, H. S., Shekher, M., Matero, A., Shah, R., Swaby, I., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Wilson, R. K., Martienssen, R. (2000) The complete sequence of a heterochromatic island from a higher eukaryote. Cell, 100 (3). pp. 377-386. ISSN 00928674 (ISSN)
McCurrach, M. E., Lowe, S. W. (2001) Methods for studying pro- and antiapoptotic genes in nonimmortal cells. In: Methods in Cell Biology. Methods in Cell Biology, 66 . Academic Press Inc, San Diego, pp. 197-227. ISBN 0091-679X
McMullen, M. D., Kresovich, S., Villeda, Hector S., Bradbury, P. J., Li, H., Sun, Q., Flint-Garcia, S., Thornsberry, J., Acharya, C. B., Bottoms, C., Brown, P. J., Browne, C., Eller, M., Guill, K., Harjes, C., Kroon, D. E., Lepak, N.., Mitchell, S. E., Peterson, B., Pressoir, G., Romero, S., Rosas, M. O., Salvo, S., Yates, H., Hanson, M., Jones, E. G., Smith, S., Glaubitz, J. C., Goodman, M. M., Ware, D. H., Holland, J. B., Buckler, E. S. (August 2009) Genetic Properties of the Maize Nested Association Mapping Population. Science, 325 (5941). pp. 737-740.
McPherson, M. J., Baron, A. J., Pappin, D. J., Wootton, J. C. (November 1984) Respiratory nitrate reductase of Escherichia coli. Sequence identification of the large subunit gene. FEBS Lett, 177 (2). pp. 260-4. ISSN 0014-5793 (Print)0014-5793 (Linking)
Meeley, R. B., Johal, G. S., Briggs, S. P., Walton, J. D. (January 1992) A Biochemical Phenotype for a Disease Resistance Gene of Maize. Plant Cell, 4 (1). pp. 71-77. ISSN 1532-298X (Electronic)1040-4651 (Linking)
Meissner, B., Warner, A., Wong, K., Dube, N., Lorch, A., McKay, S. J., Khattra, J., Rogalski, T., Somasiri, A., Chaudhry, I., Fox, R. M., Miller Iii, D. M., Baillie, D. L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moerman, D. G. (June 2009) An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. PLoS Genet, 5 (6). e1000537.
Melka, M. G., Gillis, J., Bernard, M., Abrahamowicz, M., Chakravarty, M. M., Leonard, G. T., Perron, M., Richer, L., Veillette, S., Banaschewski, T., Barker, G. J., BüChel, C., Conrod, P., Flor, H., Heinz, A., Garavan, H., Brühl, R., Mann, K., Artiges, E., Lourdusamy, A., Lathrop, M., Loth, E., Schwartz, Y., Frouin, V., Rietschel, M., Smolka, M. N., hle, A., Gallinat, J., Struve, M., Lattka, E., Waldenberger, M., Schumann, G., Pavlidis, P., Gaudet, D., Paus, T., Pausova, Z. (2013) FTO, obesity and the adolescent brain. Human Molecular Genetics, 22 (5). pp. 1050-1058. ISSN 09646906 (ISSN)
Menashe, I., Grange, P., Larsen, E. C., Banerjee-Basu, S., Mitra, P. P. (July 2013) Co-expression Profiling of Autism Genes in the Mouse Brain. PLoS Computational Biology, 9 (7). ISSN 1553734X
Metz, Charles William (April 1920) The arrangement of genes in Drosophila virilis. Proceedings of the National Academy of Sciences, 6 (4). pp. 164-166.
Miething, C., Scuoppo, C., Lindqvist, L., Reyes, J., Ruse, C., Appelmann, I., Yoon, S., Krasnitz, A., Teruya-Feldstein, J., Pappin, D., Pelletier, J., Lowe, S. (October 2012) An oncogenome-based RNAi screen identifies a tumour suppressor network in B-cell lymphoma relying on the polyamine-hypusine axis. Onkologie, 35. p. 104. ISSN 0378-584X
Milatovich, A., Bolger, G., Michaeli, T., Francke, U. (March 1994) Chromosome Localizations of Genes for 5 Camp-Specific Phosphodiesterases in Man and Mouse. Somatic Cell and Molecular Genetics, 20 (2). pp. 75-86. ISSN 0740-7750
Mills, A. (April 2002) Conducting the exploration of gene function. Seminars in Cell & Developmental Biology, 13 (2). p. 107. ISSN 1084-9521
Mills, A. A. (June 2001) Changing colors in mice: an inducible system that delivers. Genes & Development, 15 (12). pp. 1461-1467. ISSN 0890-9369
Mills, A. A. (November 2011) Talk from Alea Mills at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)
Mills, A. A., Bradley, A. (June 2001) From mouse to man: generating megabase chromosome rearrangements. Trends in Genetics, 17 (6). pp. 331-339. ISSN 0168-9525
Mills, A. A., Mills, M. J., Gardiner, D. M., Bryant, S. V., Stanbridge, E. J. (1999) Analysis of the pattern of QM expression during mouse development. Differentiation, 64 (3). pp. 161-171. ISSN 03014681 (ISSN)
Mills, A. A., Qi, Y., Bradley, A. (February 2002) Conditional inactivation of p63 by Cre-mediated excision. Genesis, 32 (2). pp. 138-141. ISSN 1526-954X
Mills, A. A., Zheng, B., Wang, X. J., Vogel, H., Roop, D. R., Bradley, A. (1999) p63 is a p53 homologue required for limb and epidermal morphogenesis. Nature, 398 (6729). pp. 708-713. ISSN 00280836 (ISSN)
Mirbahai, Leda, Williams, Timothy D, Zhan, Huiqing, Gong, Zhiyuan, Chipman, J Kevin (January 2011) Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics, 12 (1). p. 3. ISSN 1471-2164
Mistry, M., Gillis, J., Pavlidis, P. (2013) Data and design files for 6 public datasets used in "Genome-wide expression profiling of schizophrenia using a large combined cohort" Mistry, M. and Gillis, J. and Pavlidis, P. (2013) Molecular Psychiatry, 18 (2). pp. 215-225. [Dataset]
Mistry, M., Gillis, J., Pavlidis, P. (2013) Genome-wide expression profiling of schizophrenia using a large combined cohort. Molecular Psychiatry, 18 (2). pp. 215-225. ISSN 13594184 (ISSN)
Mistry, M., Gillis, J., Pavlidis, P. (September 2013) Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls. BMC Neuroscience, 14 (1). p. 105. ISSN 1471-2202
Miyabayashi, Koji, Baker, Lindsey A, Deschênes, Astrid, Traub, Benno, Caligiuri, Giuseppina, Plenker, Dennis, Alagesan, Brinda, Belleau, Pascal, Li, Siran, Kendall, Jude, Jang, Gun Ho, Kawaguchi, Risa Karakida, Somerville, Tim DD, Tiriac, Hervé, Hwang, Chang-Il, Burkhart, Richard A, Roberts, Nicholas J, Wood, Laura D, Hruban, Ralph H, Gillis, Jesse, Krasnitz, Alexander, Vakoc, Christopher R, Wigler, Michael, Notta, Faiyaz, Gallinger, Steven, Park, Youngkyu, Tuveson, David A (October 2020) Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes. Cancer Discovery, 10 (10). pp. 1566-1589. ISSN 2159-8274
Mo, Q., Wang, S., Seshan, V. E., Olshen, A. B., Schultz, N., Sander, C., Powers, R. S., Ladanyi, M., Shen, R. (March 2013) Pattern discovery and cancer gene identification in integrated cancer genomic data. Proceedings of the National Academy of Sciences of the United States of America, 110 (11). pp. 4245-4250. ISSN 00278424 (ISSN)
Mo, Yan, Duan, Shoufu, Zhang, Xu, Hua, Xu, Zhou, Hui, Wei, Hong-Jian, Watanabe, Jun, McQuillan, Nicholas, Su, Zhenyi, Gu, Wei, Wu, Cheng-Chia, Vakoc, Christopher R, Hashizume, Rintaro, Chang, Kenneth, Zhang, Zhiguo (October 2022) Epigenome programing by H3.3K27M mutation creates a dependence of pediatric glioma on SMARCA4. Cancer Discovery. CD-21. ISSN 2159-8274
Moore, J. M., Calzada, J. P., Gagliano, W., Grossniklaus, U. (1997) Genetic characterization of hadad, a mutant disrupting female gametogenesis in Arabidopsis thaliana. Cold Spring Harbor Symposia on Quantitative Biology, 62. pp. 35-47. ISSN 0091-7451 (Print)
Moreno, Pablo, Fexova, Silvie, George, Nancy, Manning, Jonathan R, Miao, Zhichiao, Mohammed, Suhaib, Muñoz-Pomer, Alfonso, Fullgrabe, Anja, Bi, Yalan, Bush, Natassja, Iqbal, Haider, Kumbham, Upendra, Solovyev, Andrey, Zhao, Lingyun, Prakash, Ananth, García-Seisdedos, David, Kundu, Deepti J, Wang, Shengbo, Walzer, Mathias, Clarke, Laura, Osumi-Sutherland, David, Tello-Ruiz, Marcela Karey, Kumari, Sunita, Ware, Doreen, Eliasova, Jana, Arends, Mark J, Nawijn, Martijn C, Meyer, Kerstin, Burdett, Tony, Marioni, John, Teichmann, Sarah, Vizcaíno, Juan Antonio, Brazma, Alvis, Papatheodorou, Irene (November 2021) Expression Atlas update: gene and protein expression in multiple species. Nucleic Acids Research. ISSN 0305-1048
Moretti, F., Marinari, B., Iacono, N. L., Botti, E., Giunta, A., Spallone, G., Garaffo, G., Vernersson-Lindahl, E., Merlo, G., Mills, A. A., Ballaro, C., Alema, S., Chimenti, S., Guerrini, L., Costanzo, A. (May 2010) A regulatory feedback loop involving p63 and IRF6 links the pathogenesis of 2 genetically different human ectodermal dysplasias. Journal of Clinical Investigation, 120 (5). pp. 1570-1577.
Moretti, F., Spallone, G., Botti, E., Giunta, A., Lo Iacono, N., Merlo, G., Mills, A. A., Alema, S., Chimenti, S., Guerrini, L., Costanzo, A. (April 2010) p63 and IRF6 are components of a common molecular pathway disrupted in ectodermal dysplasias. Journal of Investigative Dermatology, 130. p. 626. ISSN 0022-202X
Morgan, C. C., Mc Cartney, A. M., Donoghue, M. T. A., Loughran, N. B., Spillane, C., Teeling, E. C., O'Connell, M. J. (November 2013) Molecular adaptation of telomere associated genes in mammals. BMC Evolutionary Biology, 13. p. 251. ISSN 1471-2148
Moukarzel, Lea A, Ferrando, Lorenzo, Da Cruz Paula, Arnaud, Brown, David N, Geyer, Felipe C, Pareja, Fresia, Piscuoglio, Salvatore, Papanastasiou, Anastasios D, Fusco, Nicola, Marchiò, Caterina, Abu-Rustum, Nadeem R, Murali, Rajmohan, Brogi, Edi, Wen, Hannah Y, Norton, Larry, Soslow, Robert A, Vincent-Salomon, Anne, Reis-Filho, Jorge S, Weigelt, Britta (April 2021) The genetic landscape of metaplastic breast cancers and uterine carcinosarcomas. Molecular Oncology, 15 (4). pp. 1024-1039. ISSN 1574-7891
Murn, J., Mlinaric-Rascan, I., Vaigot, P., Alibert, O., Frouin, V., Gidrol, X. (July 2009) A Myc-regulated transcriptional network controls B-cell fate in response to BCR triggering. BMC Genomics, 10. p. 323.
Muthuswamy, S. K., Li, D. M., Lelievre, S., Bissell, M. J., Brugge, J. S. (September 2001) ErbB2, but not ErbB1, reinitiates proliferation and induces luminal repopulation in epithelial acini. Nature Cell Biology, 3 (9). pp. 785-792. ISSN 1465-7392
Muto, Tomoya, Guillamot, Maria, Yeung, Jennifer, Fang, Jing, Bennett, Joshua, Nadorp, Bettina, Lasry, Audrey, Redondo, Luna Zea, Choi, Kwangmin, Gong, Yixiao, Walker, Callum S, Hueneman, Kathleen, Bolanos, Lyndsey C, Barreyro, Laura, Lee, Lynn H, Greis, Kenneth D, Vasyliev, Nikita, Khodadadi-Jamayran, Alireza, Nudler, Evgeny, Lujambio, Amaia, Lowe, Scott W, Aifantis, Iannis, Starczynowski, Daniel T (February 2022) TRAF6 functions as a tumor suppressor in myeloid malignancies by directly targeting MYC oncogenic activity. Cell Stem Cell, 29 (2). 298-314.e9. ISSN 1934-5909
Mylona, P., Linstead, P., Martienssen, R., Dolan, L. (September 2002) SCHIZORIZA controls an asymmetric cell division and restricts epidermal identity in the Arabidopsis root. Development, 129 (18). pp. 4327-4334. ISSN 0950-1991
N
Nadif Kasri, N., Van Aelst, L. (February 2008) Rho-linked genes and neurological disorders. Pflügers Archiv European Journal of Physiology, 455 (5). pp. 787-797.
Naguib, A., Trotman, L. C. (2013) PTEN plasticity: how the taming of a lethal gene can go too far. Trends In Cell Biology, 23 (8). pp. 374-379. ISSN 0962-8924
Nguyen, Y. H., Mills, A. A., Stanbridge, E. J. (1998) Assembly of the QM protein onto the 60S ribosomal subunit occurs in the cytoplasm. Journal of Cellular Biochemistry, 68 (2). pp. 281-285. ISSN 07302312 (ISSN)
Niida, A., Smith, A. D., Imoto, S., Aburatani, H., Zhang, M. Q., Akiyama, T. (February 2009) Gene set-based module discovery in the breast cancer transcriptome. BMC Bioinformatics, 10. p. 71. ISSN 1471-2105
Nowak, D. G., Katsenelson, K. C., Watrud, K. E., Chen, M., Mathew, G., D'Andrea, V. D., Lee, M. F., Swamynathan, M. M., Casanova-Salas, I., Jibilian, M. C., Buckholtz, C. L., Ambrico, A. J., Pan, C. H., Wilkinson, J. E., Newton, A. C., Trotman, L. C. (May 2019) The PHLPP2 phosphatase is a druggable driver of prostate cancer progression. J Cell Biol, 218 (6). pp. 1943-1957. ISSN 0021-9525
Ntakirutimana, Fabrice, Tranchant-Dubreuil, Christine, Cubry, Philippe, Chougule, Kapeel, Zhang, Jianwei, Wing, Rod A, Adam, Hélène, Lorieux, Mathias, Jouannic, Stefan (August 2023) Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud. G3: Genes, Genomes, Genetics. jkad174. ISSN 2160-1836 (Public Dataset)
O
O'Donnell, W. T., Zito, K., Burbach, B., Svoboda, K., Warren, S. T. (October 2001) Identification of genes differentially expressed in wildtype and Fmr1 knockout mouse barrel cortex. American Journal of Human Genetics, 69 (4). p. 577. ISSN 0002-9297
O'Meara, M. J., Ballouz, S., Shoichet, B. K., Gillis, J. (2016) Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction. PLoS One, 11 (7). e0160098. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Oday, K., Schultz, D., Ericsen, W., Rawluk, L., Howe, M. (1979) Correction and refinement of the genetic map of bacteriophage Mu. Virology, 93 (2). pp. 320-328. ISSN 0042-6822
Okuda, T., Valentine, M. B., Shurtleff, S. A., Hulshof, M. G., Komuro, H., Raimondi, S. C., Pui, C. H., Beach, D., Sherr, C. J., Look, A. T., Downing, J. R. (November 1994) Frequent Deletion of Ink4a/Mts1 in Pediatric Acute Lymphoblastic-Leukemia. Blood, 84 (10). A298-A298. ISSN 0006-4971
Orlow, I., Lacombe, L., Hannon, G. J., Serrano, M., Pellicer, I., Dalbagni, G., Reuter, V. E., Zhang, Z. F., Beach, D., Cordon-Cardo, C. (1995) Deletion of the p16 and p15 genes in human bladder tumors. Journal of the National Cancer Institute, 87 (20). pp. 1524-1529. ISSN 00278874 (ISSN)
Osborn, T. C., Pires, J. C., Birchler, J. A., Auger, D. L., Chen, Z. J., Lee, H. S., Comai, L., Madlung, A., Doerge, R. W., Colot, V., Martienssen, R. A. (March 2003) Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics, 19 (3). pp. 141-7. ISSN 0168-9525
P
Paddison, P. J., Caudy, A. A., Bernstein, E., Hannon, G. J., Conklin, D. S. (2002) Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes and Development, 16 (8). pp. 948-958. ISSN 08909369 (ISSN)
Paddison, P. J., Caudy, A. A., Hannon, G. J. (2002) Stable suppression of gene expression by RNAi in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America, 99 (3). pp. 1443-1448. ISSN 00278424 (ISSN)
Paddison, Patrick J. (2004) RNA interference in mammals: the quest for illuminating gene function. PhD thesis, Cold Spring Harbor Laboratory.
Pan, Xiufang, Zhan, Huiqing, Gong, Zhiyuan (2008) Ornamental expression of red fluorescent protein in transgenic founders of white skirt tetra (Gymnocorymbus ternetzi). Marine Biotechnology, 10 (5). pp. 497-501. ISSN 1436-2228
Pardee, T., Zuber, J., Lowe, S. W. (November 2009) The Flt3 ITD Accelerates An Already Established Myeloid Leukemia and Alters Chemotherapy Response In Vitro and In Vivo in a p53 Dependent Manner. Blood, 114 (22). p. 685. ISSN 0006-4971
Park, E., Kim, H., Kim, J. M., Primack, B., Vidal-Cardenas, S., Xu, Y., Price, B. D., Mills, A. A., D’Andrea, A. D. (June 2013) FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis. Molecular Cell, 50 (6). pp. 908-918. ISSN 1097-2765
Paszkowski, J., Martienssen, R. A. (November 2012) Cell signaling and gene regulation. Current Opinion in Plant Biology, 15 (5). pp. 493-495. ISSN 1369-5266
Paterson, B. M., Roberts, B. E., Mathews, M. B. (1978) Mapping of Structural Gene Sequences in Adenovirus 2 DNA by Hybrid Arrested Cell-Free Translation. Journal of Supramolecular Structure. p. 268. ISSN 0091-7419
Paul, Thomas A, Rovnak, Joel, Quackenbush, Sandra L, Whitlock, Kathleen, Zhan, Huiqing, Gong, Zhiyuan, Spitsbergen, Jan, Bowser, Paul R, Casey, James W (April 2011) Transgenic expression of walleye dermal sarcoma virus rv-cyclin (orfA) in zebrafish does not result in tissue proliferation. Marine Biotechnology, 13 (2). pp. 142-150. ISSN 1436-2228
Paul, A., Cai, Y., Atwal, G. S., Huang, Z. J. (June 2012) Developmental Coordination of Gene Expression between Synaptic Partners During GABAergic Circuit Assembly in Cerebellar Cortex. Frontiers in Neural Circuits, 6. p. 37. ISSN 1662-5110 (Electronic)1662-5110 (Linking)
Paus, T., Bernard, M., Chakravarty, M. M., Davey Smith, G., Gillis, J., Lourdusamy, A., Melka, M. G., Leonard, G., Pavlidis, P., Perron, M., Pike, G. B., Richer, L., Schumann, G., Timpson, N., Toro, R., Veillette, S., Pausova, Z. (2012) KCTD8 gene and brain growth in adverse intrauterine environment: A genome-wide association study. Cerebral Cortex, 22 (11). pp. 2634-2642. ISSN 10473211 (ISSN)
Pavlidis, P., Gillis, J. (2012) Progress and challenges in the computational prediction of gene function using networks. F1000 Research, 1. ISSN 20461402 (ISSN)
Pavlidis, P., Gillis, J. (October 2013) Progress and challenges in the computational prediction of gene function using networks: 2012-2013 update. F1000 Research, 2. p. 230. ISSN 20461402 (ISSN)
Pei, L., Peng, Y., Yang, Y., Ling, X. B., Van Eyndhoven, W. G., Nguyen, K. C., Rubin, M., Hoey, T., Powers, S., Li, J. (October 2002) PRC17, a novel oncogene encoding a Rab GTPase-activating protein, is amplified in prostate cancer. Cancer Res, 62 (19). pp. 5420-4. ISSN 0008-5472 (Print)0008-5472
Pei, L., Wiser, O., Slavin, A., Mu, D., Powers, S., Jan, L. Y., Hoey, T. (June 2003) Oncogenic potential of TASK3 (Kcnk9) depends on K+ channel function. Proceedings of the National Academy of Sciences of the United States of America, 100 (13). pp. 7803-7. ISSN 0027-8424
Penning, B. W., Hunter, C. T., Tayengwa, R., Eveland, A. L., Dugard, C. K., Olek, A. T., Vermerris, W., Koch, K. E., McCarty, D. R., Davis, M. F., Thomas, S. R., McCann, M. C., Carpita, N. C. (December 2009) Genetic resources for maize cell wall biology. Plant Physiology, 151 (4). pp. 1703-1728.
Perales, R., Erickson, B., Zhang, L., Kim, H., Valiquett, E., Bentley, D. (October 2013) Gene promoters dictate histone occupancy within genes. Embo Journal, 32 (19). pp. 2645-2656. ISSN 02614189 (ISSN)
Pereira, L, Sapkota, M, Alonge, M, Zheng, Y, Zhang, Y, Razifard, H, Taitano, NK, Schatz, MC, Fernie, AR, Wang, Y, Fei, Z, Caicedo, AL, Tieman, DM, van der Knaap, E (June 2021) Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science, 12. ISSN 1664-462X
Pervouchine, D. D., Djebali, S., Breschi, A., Davis, C. A., Barja, P. P., Dobin, A., Tanzer, A., Lagarde, J., Zaleski, C., See, L. H., Fastuca, M., Drenkow, J., Wang, H., Bussotti, G., Pei, B., Balasubramanian, S., Monlong, J., Harmanci, A., Gerstein, M., Beer, M. A., Notredame, C., Guigo, R., Gingeras, T. R. (January 2015) Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression. Nat Commun, 6. p. 5903. ISSN 2041-1723
Petersen, M., Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B., Mundy, J. (December 2000) Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance. Cell, 103 (7). pp. 1111-1120. ISSN 0092-8674
Peterson, T. (October 1990) Intragenic transposition of Ac generates a new allele of the maize P gene. Genetics, 126 (2). pp. 469-76. ISSN 0016-6731 (Print)0016-6731 (Linking)
Peyser, A., Bristow, S. L., Puig, O., Pollock, A., Mills, A., Niknazar, M., Hershlag, A. (September 2017) Do tumor suppressor genes (TSG) play a role in diminished ovarian reserve (DOR). Fertility and Sterility, 108 (3, Sup). e220. ISSN 0015-0282
Piano, F., Schetter, A. J., Mangone, M., Stein, L., Kemphues, K. J. (December 2000) RNAi analysis of genes expressed in the ovary of Caenorhabditis elegans. Current Biology, 10 (24). pp. 1619-1622. ISSN 0960-9822
Piccini, A., Malinow, R. (July 2002) Critical postsynaptic density 95/disc large/zonula occludens-1 interactions by glutamate receptor 1 (GluR1) and GluR2 required at different subcellular sites. Journal of Neuroscience, 22 (13). pp. 5387-5392. ISSN 0270-6474
Pierce-Shimomura, J. T. , Chen, B. L. , Mun, J. J. , Ho, R., Sarkis, R., McIntire, S. L. (December 2008) Genetic analysis of crawling and swimming locomotory patterns in C. elegans. Proc Natl Acad Sci U S A, 105 (52). pp. 20982-20987.
Pinon, V., Etchells, J. P., Rossignol, P., Collier, S. A., Arroyo, J. M., Martienssen, R. A., Byrne, M. E. (April 2008) Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development, 135 (7). pp. 1315-24. ISSN 0950-1991 (Print)0950-1991 (Linking)
Pisano, Thomas J, Dhanerawala, Zahra M, Kislin, Mikhail, Bakshinskaya, Dariya, Engel, Esteban A, Hansen, Ethan J, Hoag, Austin T, Lee, Junuk, de Oude, Nina L, Venkataraju, Kannan Umadevi, Verpeut, Jessica L, Hoebeek, Freek E, Richardson, Ben D, Boele, Henk-Jan, Wang, Samuel S-H (September 2021) Homologous organization of cerebellar pathways to sensory, motor, and associative forebrain. Cell reports, 36 (12). p. 109721. ISSN 2211-1247
Plavskin, Y., Timmermans, M. C. (January 2013) Small RNA-Regulated Networks and the Evolution of Novel Structures in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 77. ISSN 00917451 (ISSN)
Poremba, C., Scheel, C., Hero, B., Christiansen, H., Schaefer, K. L., Nakayama, J., Berthold, F., Juergens, H., Boecker, W., Dockhorn-Dworniczak, B. (July 2000) Telomerase activity and telomerase subunits gene expression patterns in neuroblastoma: A molecular and immunohistochemical study establishing prognostic tools for fresh-frozen and paraffin-embedded tissues. Journal of Clinical Oncology, 18 (13). pp. 2582-2592. ISSN 0732-183X
Porteous, D. J., Thomson, P. A., Millar, J. K., Evans, K. L., Hennah, W., Soares, D. C., McCarthy, S., McCombie, W. R., Clapcote, S. J., Korth, C., Brandon, N. J., Sawa, A., Kamiya, A., Roder, J. C., Lawrie, S. M., McIntosh, A. M., St Clair, D., Blackwood, D. H. (February 2014) DISC1 as a genetic risk factor for schizophrenia and related major mental illness: response to Sullivan. Mol Psychiatry, 19 (2). pp. 141-3. ISSN 1359-4184
Powers, S., Gonzales, E., Christensen, T., Cubert, J., Broek, D. (June 1991) Functional cloning of BUD5, a CDC25-related gene from S. cerevisiae that can suppress a dominant-negative RAS2 mutant. Cell, 65 (7). pp. 1225-31. ISSN 0092-8674 (Print)0092-8674
Pruitt, R. E., Vielle-Calzada, J. P., Ploense, S. E., Grossniklaus, U., Lolle, S. J. (February 2000) FIDDLEHEAD, a gene required to suppress epidermal cell interactions in Arabidopsis, encodes a putative lipid biosynthetic enzyme. Proceedings of the National Academy of Sciences of the United States of America, 97 (3). pp. 1311-1316. ISSN 0027-8424
Ptashne, M., Gann, A. (2002) Genes and Signals. Cold Spring Harbor Laboratory Press. ISBN 9780879696337
R
Rabinowicz, P. D., Grotewold, E. (November 2000) A novel reverse-genetic approach (SIMF) identifies Mutator insertions in new Myb genes. Planta, 211 (6). pp. 887-893. ISSN 0032-0935
Rabinowicz, P. D., McCombie, W. R., Martienssen, R. A. (2003) Gene enrichment in plant genomic shotgun libraries. Current Opinion in Plant Biology, 6 (2). pp. 150-156. ISSN 13695266 (ISSN)
Rabinowicz, P. D., Palmer, L. E., May, B. P., Hemann, M. T., Lowe, S. W., McCombie, W. R., Martienssen, R. A. (December 2003) Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research, 13 (12). pp. 2658-64. ISSN 1088-9051
Rabinowicz, P. D., Schutz, K., Dedhia, N., Yordan, C., Parnell, L. D., Stein, L., McCombie, W. R., Martienssen, R. A. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics, 23 (3). pp. 305-308. ISSN 10614036 (ISSN)
Rahmanian, S., Murad, R., Breschi, A., Zeng, W., Mackiewicz, M., Williams, B., Davis, C. A., Roberts, B., Meadows, S., Moore, D., Trout, D., Zaleski, C., Dobin, A., Sei, L. H., Drenkow, J., Scavelli, A., Gingeras, T. R., Wold, B. J., Myers, R. M., Guigo, R., Mortazavi, A. (November 2019) Dynamics of microRNA expression during mouse prenatal development. Genome Res, 29 (11). pp. 1900-1909. ISSN 1088-9051
Raleigh, E. A., Murray, N. E., Revel, H., Blumenthal, R. M., Westaway, D., Reith, A. D., Rigby, P. W. J., Elhai, J., Hanahan, D. (February 1988) Mcra and Mcrb Restriction Phenotypes of Some Escherichia-Coli Strains and Implications for Gene Cloning. Nucleic Acids Research, 16 (4). pp. 1563-1575. ISSN 0305-1048
Rappaport, A. R. (2011) Dissecting tumor suppressor and tumor maintenance genes in poor prognosis AML. PhD thesis, Cold Spring Harbor Laboratory.
Rathert, P., Roth, M., Neumann, T., Muerdter, F., Roe, J. S., Muhar, M., Deswal, S., Cerny-Reiterer, S., Peter, B., Jude, J., Hoffmann, T., Boryn, L. M., Axelsson, E., Schweifer, N., Tontsch-Grunt, U., Dow, L. E., Gianni, D., Pearson, M., Valent, P., Stark, A., Kraut, N., Vakoc, C. R., Zuber, J. (September 2015) Transcriptional plasticity promotes primary and acquired resistance to BET inhibition. Nature, 525. pp. 543-547. ISSN 1476-4687 (Electronic)0028-0836 (Linking)
Reginato, M. J., Mills, K., Debnath, J., Paulus, J., Muthuswamy, S., Brugge, J. (November 2002) Bim regulation or lumen formation in epithelial acini is blocked by oncogenes. Molecular Biology of the Cell, 13. 4A-4A. ISSN 1059-1524
Reilly, P. T., Herr, W. (July 2002) Spontaneous reversion of tsBN67 cell proliferation and cytokinesis defects in the absence of HCF-1 function. Experimental Cell Research, 277 (1). pp. 119-130. ISSN 0014-4827
Rice, A. P., Carlotti, F. (December 1990) Structural analysis of wild-type and mutant human immunodeficiency virus type 1 Tat proteins. J Virol, 64 (12). pp. 6018-26. ISSN 0022-538X (Print)0022-538X (Linking)
Rigo, F., Hua, Y. M., Chun, S. J., Krainer, A. R., Bennett, C. F. (October 2011) Modulation of Gene Expression By Oligonucleotide Chemistry-Dependent Recruitment of Proteins to RNA Transcripts. Nucleic Acid Therapeutics, 21 (5). A53-A54. ISSN 2159-3337
Roca, X., Krainer, A. R. (March 2009) A splicing component adapted to gene silencing. Nat Biotechnol, 27 (3). pp. 250-1. ISSN 1546-1696 (Electronic)1087-0156 (Linking)
Rocha, S., Soengas, M. S., Lowe, S. W., Glanzmann, C., Fabbro, D., Winterhalter, K., Bodis, S., Pruschy, M. (September 2000) Protein kinase C inhibitor and irradiation-induced apoptosis: Relevance of the cytochrome c-mediated caspase-9 death pathway. Cell Growth & Differentiation, 11 (9). pp. 491-499. ISSN 1044-9523
Roe, J. S., Vakoc, C. R. (2013) Oncogene interference through targeting of chromatin regulators. Cell Cycle, 12 (10). pp. 1475-1476. ISSN 1551-4005 (Electronic)1551-4005 (Linking)
S
Sabin, L. R., Delas, M. J., Hannon, G. J. (March 2013) Dogma derailed: the many influences of RNA on the genome. Molecular Cell, 49 (5). pp. 783-94. ISSN 1097-2765
Saborowski, A., Saborowski, M., Davare, M. A., Druker, B. J., Klimstra, D. S., Lowe, S. W. (November 2013) Mouse model of intrahepatic cholangiocarcinoma validates FIG-ROS as a potent fusion oncogene and therapeutic target. Proceedings of the National Academy of Sciences of the United States of America, 110 (48). pp. 19513-19518. ISSN 00278424 (ISSN)
Safaric Tepes, Polona, Pal, Debjani, Lindsted, Trine, Ibarra, Ingrid, Lujambio, Amaia, Jimenez Sabinina, Vilma, Senturk, Serif, Miller, Madison, Korimerla, Navya, Huang, Jiahao, Glassman, Lawrence, Lee, Paul, Zeltsman, David, Hyman, Kevin, Esposito, Michael, Hannon, Greg, Sordella, Raffaella (July 2021) An epigenetic switch regulates the ontogeny of AXL positive/EGFR-TKI resistant cells by modulating miR-335 expression. eLife, 10. ISSN 2050-084X
Samejima, I., Matsumoto, T., Nakaseko, Y., Beach, D., Yanagida, M. (May 1993) Identification of 7 New Cut Genes Involved in Schizosaccharomyces-Pombe Mitosis. Journal of Cell Science, 105. pp. 135-143. ISSN 0021-95331477-9137
Sawey, E. T., Chanrion, M., Cai, C., Wu, G., Zhang, J., Zender, L., Zhao, A., Busuttil, R. W., Yee, H., Stein, L. D., French, D. M., Finn, Richard S, Lowe, S. W., Powers, S. (March 2011) Identification of a Therapeutic Strategy Targeting Amplified FGF19 in Liver Cancer by Oncogenomic Screening. Cancer Cell, 19 (3). pp. 347-358. ISSN 1535-6108
Scanlon, M. J., Timmermans, M. (February 2013) Growth and development: from genes to networks and a mechanistic understanding of plant development. Current Opinion in Plant Biology, 16 (1). pp. 1-4. ISSN 1369-5266
Schmitt, A., Zink, M., Muller, B., May, B., Herb, A., Jatzko, A., Braus, D. F., Henn, F. A. (February 2003) Effects of long-term antipsychotic treatment on NMDA receptor binding and gene expression of subunits. Neurochemical Research, 28 (2). pp. 235-41. ISSN 0364-3190
Schmitt, A., Zink, M., Petroianu, G., May, B., Braus, D. F., Henn, F. A. (August 2003) Decreased gene expression of glial and neuronal glutamate transporters after chronic antipsychotic treatment in rat brain. Neuroscience Letters, 347 (2). pp. 81-4. ISSN 03043940 (ISSN)
Schmitt, C. A., Fridman, J. S., Yang, M., Baranov, E., Hoffman, R. M., Lowe, S. W. (April 2002) Dissecting p53 tumor suppressor functions in vivo. Cancer Cell, 1 (3). pp. 289-298. ISSN 1535-6108
Schmitt, C. A., Fridman, J. S., Yang, M., Lee, S., Baranov, E., Hoffman, R. M., Lowe, S. W. (May 2002) A senescence program controlled by p53 and p16(INK4a) contributes to the outcome of cancer therapy. Cell, 109 (3). pp. 335-346. ISSN 0092-8674
Schwab, R., Maizel, A., Ruiz-Ferrer, V., Garcia, D., Bayer, M., Crespi, M., Voinnet, O., Martienssen, R. A. (June 2009) Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PloS one, 4 (6). e5980. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Schwartz, Christopher J, Brogi, Edi, Marra, Antonio, Da Cruz Paula, Arnaud F, Nanjangud, Gouri J, da Silva, Edaise M, Patil, Sujata, Shah, Shreena, Ventura, Katia, Razavi, Pedram, Norton, Larry, D'alfonso, Timothy, Weigelt, Britta, Pareja, Fresia, Reis-Filho, Jorge S, Wen, Hannah Y (October 2021) The clinical behavior and genomic features of the so-called adenoid cystic carcinomas of the solid variant with basaloid features. Modern Pathology. ISSN 0893-3952
Scolnik, P. A., Hinton, P., Greenblatt, I. M., Giuliano, G., Delanoy, M. R., Spector, D. L., Pollock, D. (May 1987) Somatic instability of carotenoid biosynthesis in the tomato ghost mutant and its effect on plastid development. Planta, 171 (1). pp. 11-8. ISSN 0032-0935 (Print)0032-0935
Scorer, C. A., Clare, J. J., McCombie, W. R., Romanos, M. A., Sreekrishna, K. (1994) Rapid selection using G418 of high copy number transformants of Pichia pastoris for high-level foreign gene expression. Nature Biotechnology, 12 (2). pp. 181-184. ISSN 10870156 (ISSN)
Scott, C. L., Gil, J., Hernando, E., Teruya-Feldstein, J., Narita, M., Martinez, D., Visakorpi, T., Mu, D., Cordon-Cardo, C., Peters, G., Beach, D., Lowe, S. W. (March 2007) Role of the chromobox protein CBX7 in lymphomagenesis. Proc Natl Acad Sci U S A, 104 (13). pp. 5389-94. ISSN 0027-8424 (Print)
Seeger, G., Schloss, P., Schmidt, M. H., Ruter-Jungfleisch, A., Henn, F. A. (August 2004) Gene-environment interaction in hyperkinetic conduct disorder (HD + CD) as indicated by season of birth variations in dopamine receptor (DRD4) gene polymorphism. Neurosci Lett, 366 (3). pp. 282-6. ISSN 0304-3940 (Print)0304-3940 (Linking)
Settles, A. M., Baron, A., Barkan, A., Martienssen, R. A. (January 2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics, 157 (1). pp. 349-360. ISSN 0016-6731
Shi, Xi, Lu, Congyi, Corman, Alba, Nikish, Alexandra, Zhou, Yang, Platt, Randy J, Iossifov, Ivan, Zhang, Feng, Pan, Jen Q, Sanjana, Neville E (October 2023) Heterozygous deletion of the autism-associated gene CHD8 impairs synaptic function through widespread changes in gene expression and chromatin compaction. American Journal of Human Genetics, 110 (10). pp. 1750-1768. ISSN 0002-9297 (Public Dataset)
Shi, J., Whyte, W. A., Zepeda-Mendoza, C. J., Milazzo, J. P., Shen, C., Roe, J. S., Minder, J. L., Mercan, F., Wang, E., Eckersley-Maslin, M. A., Campbell, A. E., Kawaoka, S., Shareef, S., Zhu, Z., Kendall, J., Muhar, M., Haslinger, C., Yu, M., Roeder, R. G., Wigler, M. A., Blobel, G. A., Zuber, J., Spector, D. L., Young, R. A., Vakoc, C. R. (November 2013) Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation. Genes and Development, 27 (24). pp. 264-273. ISSN 08909369 (ISSN)
Shields, J. M., Der, C. J., Powers, S. (2001) Identification of Ras-regulated genes by representational difference analysis. Methods in Enzymology, 332. pp. 221-32. ISSN 00766879 (ISSN)
Siddiqi, I., Ganesh, G., Grossniklaus, U., Subbiah, V. (January 2000) The dyad gene is required for progression through female meiosis in Arabidopsis. Development, 127 (1). pp. 197-207. ISSN 0950-1991
Siepel, A. (October 2009) Darwinian alchemy: Human genes from noncoding DNA. Genome Res, 19 (10). pp. 1693-5. ISSN 1088-9051
Siepel, A. C., Halpern, A. L., Macken, C., Korber, B. T. (November 1995) A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences. AIDS Res Hum Retroviruses, 11 (11). pp. 1413-6. ISSN 0889-2229 (Print)0889-2229
Silva, A. J., Giese, K. P. (June 1994) Plastic genes are in! Curr Opin Neurobiol, 4 (3). pp. 413-20. ISSN 0959-4388 (Print)
Silva, A. J., Smith, A. M., Giese, K. P. (December 1997) Gene targeting and the biology of learning and memory. Annual Review of Genetics, 31. pp. 527-46. ISSN 0066-4197 (Print)
Silva, J. M., Marran, K., Parker, J. S., Silva, J., Golding, M., Schlabach, M. R., Elledge, S. J., Hannon, G. J., Chang, K. (February 2008) Profiling essential genes in human mammary cells by multiplex RNAi screening. Science, 319 (5863). pp. 617-20.
Simhal, Anish K, Maclachlan, Kylee H, Elkin, Rena, Zhu, Jiening, Norton, Larry, Deasy, Joseph O, Oh, Jung Hun, Usmani, Saad Z, Tannenbaum, Allen (November 2023) Gene interaction network analysis in multiple myeloma detects complex immune dysregulation associated with shorter survival. Blood Cancer Journal, 13 (1). p. 175. ISSN 2044-5385
Simpson, D. R., Yu, M., Zheng, S. Y., Zhao, Z. M., Muthuswamy, S. K., Tansey, W. P. (June 2011) Epithelial Cell Organization Suppresses Myc Function by Attenuating Myc Expression. Cancer Research, 71 (11). pp. 3822-3830. ISSN 0008-5472
Singh, R., Low, E. T., Ooi, L. C., Ong-Abdullah, M., Nookiah, R., Ting, N. C., Marjuni, M., Chan, P. L., Ithnin, M., Manaf, M. A., Nagappan, J., Chan, K. L., Rosli, R., Halim, M. A., Azizi, N., Budiman, M. A., Lakey, N., Bacher, B., Van Brunt, A., Wang, C., Hogan, M., He, D., MacDonald, J. D., Smith, S. W., Ordway, J. M., Martienssen, R. A., Sambanthamurthi, R. (June 2014) The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications, 5. p. 4106. ISSN 20411723
Singh, R., Low, E. T. L., Ooi, L. C. L., Ong-Abdullah, M., Ting, N. C., Nagappan, J., Nookiah, R., Amiruddin, M. D., Rosli, R., Manaf, M. A. A., Chan, K. L., Halim, M. A., Azizi, N., Lakey, N., Smith, S. W., Budiman, M. A., Hogan, M., Bacher, B., Van Brunt, A., Wang, C., Ordway, J. M., Sambanthamurthi, R., Martienssen, R. A. (August 2013) The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature, 500 (7462). pp. 340-344. ISSN 00280836
Skowronski, J. (February 1991) Expression of a human immunodeficiency virus type 1 long terminal repeat/simian virus 40 early region fusion gene in transgenic mice. J Virol, 65 (2). pp. 754-62. ISSN 0022-538X (Print)0022-538X (Linking)
Smith, Joan C, Sheltzer, Jason M (March 2022) Genome-wide identification and analysis of prognostic features in human cancers. Cell Reports, 38 (13). p. 110569. ISSN 2211-1247
Somerville, T. D. D., Xu, Y., Wu, X. S., Maia-Silva, D., Hur, S. K., de Almeida, L. M. N., Preall, J. B., Koo, P. K., Vakoc, C. R. (May 2020) ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancer. Proc Natl Acad Sci U S A, 117 (21). pp. 11471-11482. ISSN 0027-8424 (Print)0027-8424
Soto-Feliciano, Yadira M, Sánchez-Rivera, Francisco J, Perner, Florian, Barrows, Douglas W, Kastenhuber, Edward R, Ho, Yu-Jui, Carroll, Thomas, Xiong, Yijun, Anand, Disha, Soshnev, Alexey A, Gates, Leah, Beytagh, Mary Clare, Cheon, David, Gu, Shengqing, Liu, X Shirley, Krivtsov, Andrei V, Meneses, Maximiliano, de Stanchina, Elisa, Stone, Richard M, Armstrong, Scott A, Lowe, Scott W, Allis, C David (January 2023) A Molecular Switch between Mammalian MLL Complexes Dictates Response to Menin-MLL Inhibition. Cancer Discovery, 13 (1). pp. 146-169. ISSN 2159-8274
Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. M., Ferreira, S. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. M., de Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M., Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H., Heckerman, D. (December 2019) Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. Gigascience, 8 (12). giz129. ISSN 2047-217x (Public Dataset)
Spector, D. L. (November 2012) Talk from David Spector at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)
Spector, D. L. (2003) The dynamics of chromosome organization and gene regulation. Annual Review of Biochemistry, 72. pp. 573-608. ISSN 0066-4154
Spillane, C., MacDougall, C., Stock, C., Kohler, C., Vielle-Calzada, J. P., Nunes, S. M., Grossniklaus, U., Goodrich, J. (November 2000) Interaction of the Arabidopsis Polycomb group proteins FIE and MEA mediates their common phenotypes. Current Biology, 10 (23). pp. 1535-1538. ISSN 0960-9822
Stanbridge, E., Farmer, A., Mills, A., Loftus, T., Kongkasuriyachai, D., Dowdy, S., Weissman, B. (1994) Molecular characterization of QM, a novel gene with properties consistent with tumor suppressor function. Cold Spring Harbor Symposia on Quantitative Biology, 59. pp. 573-576. ISSN 00917451 (ISSN)
Starr, T. K., Allaei, R., Silverstein, K. A. T., Staggs, R. A., Sarver, A. L., Bergemann, T. L., Gupta, M., O'Sullivan, M. G., Matise, I., Dupuy, A. J., Collier, L. S., Powers, S., Oberg, A. L., Asmann, Y. W., Thibodeau, S. N., Tessarollo, L., Copeland, N. G., Jenkins, N. A., Cormier, R. T., Largaespada, D. A. (March 2009) A Transposon-Based Genetic Screen in Mice Identifies Genes Altered in Colorectal Cancer. Science, 323 (5922). pp. 1747-1750. ISSN 0036-8075
Stasiv, Y., Regulski, M., Kuzin, B., Tully, T., Enikolopov, G. (November 2001) The Drosophila nitric-oxide synthase gene (dNOS) encodes a family of proteins that can modulate NOS activity by acting as dominant negative regulators. Journal of Biological Chemistry, 276 (45). pp. 42241-42251. ISSN 0021-9258
Stebbins, M. J., Yin, J. C. P. (May 2001) Adaptable doxycycline-regulated gene expression systems for Drosophila. Gene, 270 (1-2). pp. 103-111. ISSN 0378-1119
Stefanski, Heather E, Xing, Yan, Nicholls, Jemma, Jonart, Leslie, Goren, Emily, Taylor, Patricia A, Mills, Alea A, Riddle, Megan, McGrath, John, Tolar, Jakub, Hollander, Georg A, Blazar, Bruce R (January 2022) P63 targeted deletion under the FOXN1 promoter disrupts pre-and post-natal thymus development, function and maintenance as well as induces severe hair loss. PLoS One, 17 (1). ISSN 1932-6203
Steger, D. J., Lefterova, M. I., Ying, L., Stonestrom, A. J., Schupp, M., Zhuo, D., Vakoc, A. L., Kim, J. E., Chen, J., Lazar, M. A., Blobel, G. A., Vakoc, C. R. (2008) DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells. Molecular and Cellular Biology, 28 (8). pp. 2825-2839. ISSN 02707306 (ISSN)
Stein, L. D. (October 1999) Internet access to the C. elegans genome. Trends in Genetics, 15 (10). pp. 425-7. ISSN 0168-9525 (Print)
Storm, P., Aits, S., Puthia, M. K., Urbano, A., Northen, T., Powers, S., Bowen, B., Chao, Y., Reindl, W., Lee, D. Y., Sullivan, N. L., Zhang, J., Trulsson, M., Yang, H., Watson, J. D., Svanborg, C. (June 2011) Conserved features of cancer cells define their sensitivity to HAMLET-induced death; c-Myc and glycolysis. Oncogene, 30 (48). pp. 4765-4779. ISSN 09509232 (ISSN)
Strathern, J., Shafer, B., Hicks, J., McGill, C. (1988) a/α-Specific repression by MATα2. Genetics, 120 (1). pp. 75-81. ISSN 00166731 (ISSN)
Streppel, M. M., Lata, S., Delabastide, M., Montgomery, E. A., Wang, J. S., Canto, M. I., Macgregor-Das, A. M., Pai, S., Morsink, F. H., Offerhaus, G. J., Antoniou, E., Maitra, A., McCombie, W. R. (January 2014) Next-generation sequencing of endoscopic biopsies identifies ARID1A as a tumor-suppressor gene in Barrett's esophagus. Oncogene, 33 (3). pp. 347-57. ISSN 0950-9232
Sturm, R. A., Dalton, S., Wells, J. R. E. (September 1988) Conservation of Histone H2a-H2b Intergene Regions a Role for the H2b Specific Element in Divergent Transcription. Nucleic Acids Research, 16 (17). pp. 8571-8586. ISSN 0305-1048
Su, H., Mills, A. A., Wang, X. Z., Bradley, A. (February 2002) A targeted X-linked CMV-Cre line. Genesis, 32 (2). pp. 187-188. ISSN 1526-954X
Su, H. P., Brugnera, E., Van Criekinge, W., Smits, E., Hengartner, M., Bogaert, T., Ravichandran, K. S. (March 2000) Identification and characterization of a dimerization domain in CED-6, an adapter protein involved in engulfment of apoptotic cells. Journal of Biological Chemistry, 275 (13). pp. 9542-9549. ISSN 0021-9258
Sun, H., Charles, C. H., Lau, L. F., Tonks, N. K. (November 1993) MKP-1 (3CH134), an immediate early gene product, is a dual specificity phosphatase that dephosphorylates MAP kinase in vivo. Cell, 75 (3). pp. 487-493. ISSN 0092-8674
Sun, H., Tonks, N. K. (November 1994) The coordinated action of protein tyrosine phosphatases and kinases in cell signaling. Trends in Biochemical Sciences, 19 (11). pp. 480-485. ISSN 0968-0004
Sun, Xueqin, Klingbeil, Olaf, Lu, Bin, Wu, Caizhi, Ballon, Carlos, Ouyang, Meng, Wu, Xiaoli S, Jin, Ying, Hwangbo, Yon, Huang, Yu-Han, Somerville, Tim DD, Chang, Kenneth, Park, Jung, Chung, Taemoon, Lyons, Scott K, Shi, Junwei, Vogel, Hannes, Schulder, Michael, Vakoc, Christopher R, Mills, Alea A (December 2022) BRD8 maintains glioblastoma by epigenetic reprogramming of the p53 network. Nature. ISSN 0028-0836
Sun, Yonghao, Dong, Liang, Zhang, Ying, Lin, Da, Xu, Weize, Ke, Changxiong, Han, Linqian, Deng, Lulu, Li, Guoliang, Jackson, David, Li, Xingwang, Yang, Fang (June 2020) 3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize. Genome Biology, 21 (1). p. 143. ISSN 1474-760X
Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H., Martienssen, R. (July 1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes & Development, 9 (14). pp. 1797-1810. ISSN 0890-9369
Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (September 2023) Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution. Nature Ecology and Evolution. ISSN 2397-334X
Suzuki, K., Haraguchi, R., Ogata, T., Barbieri, O., Alegria, O., Vieux-Rochas, M., Nakagata, N., Ito, M., Mills, A. A., Kurita, T., Levi, G., Yamada, G. (January 2008) Abnormal urethra formation in mouse models of Split-hand/split-foot malformation type 1 and type 4. Eur J Hum Genet, 16 (1). pp. 36-44.
T
Taguchi-Shiobara, F., Yuan, Z., Hake, S., Jackson, D. (October 2001) The fasciated ear2 gene encodes a leucine-rich repeat receptor-like protein that regulates shoot meristem proliferation in maize. Genes & Development, 15 (20). pp. 2755-2766. ISSN 0890-9369
Tai, Y., Janas, J. A., Wang, C. L., Van Aelst, L. (January 2014) Regulation of Chandelier Cell Cartridge and Bouton Development via DOCK7-Mediated ErbB4 Activation. Cell Reports, 6 (2). pp. 254-63. ISSN 22111247 (ISSN)
Takao, Sumiko, Forbes, Lauren, Uni, Masahiro, Cheng, Shuyuan, Pineda, Jose Mario Bello, Tarumoto, Yusuke, Cifani, Paolo, Minuesa, Gerard, Chen, Celine, Kharas, Michael G, Bradley, Robert K, Vakoc, Christopher R, Koche, Richard P, Kentsis, Alex (February 2021) Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia. eLife, 10. pp. 1-46. ISSN 2050-084X
Tansey, William P., Herr, Winship (February 1997) Selective use of TBP and TFIIB revealed by a TATA-TBP-TFIIB array with altered specificity. Science, 275 (5301). pp. 829-31. ISSN 0036-8075 (Print)
Tao, T., Walter, J., Brennan, K. J., Cotterman, M. M., Blumenthal, R. M. (June 1989) Sequence, Internal Homology and High-Level Expression of the Gene for a DNA-(Cytosine N4)-Methyltransferase, M-Pvu-Ii. Nucleic Acids Research, 17 (11). pp. 4161-4175. ISSN 0305-1048
Temple, G., Gerhard, D. S., Rasooly, R., Feingold, E. A., Good, P. J., Robinson, C., Mandich, A., Derge, J. G., Lewis, J., Shoaf, D., Collins, F. S., Jang, W., Wagner, L., Shenmen, C. M., Misquitta, L., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Yankie, L., Ward, M., Phan, L., Astashyn, A., Brown, G., Farrell, C., Hart, J., Landrum, M., Maidak, B. L., Murphy, M., Murphy, T., Rajput, B., Riddick, L., Webb, D., Weber, J., Wu, W., Pruitt, K. D., Maglott, D., Siepel, A., Brejova, B., Diekhans, M., Harte, R., Baertsch, R., Kent, J., Haussler, D., Brent, M., Langton, L., Comstock, C. L., Stevens, M., Wei, C., van Baren, M. J., Salehi-Ashtiani, K., Murray, R. R., Ghamsari, L., Mello, E., Lin, C., Pennacchio, C., Schreiber, K., Shapiro, N., Marsh, A., Pardes, E., Moore, T., Lebeau, A., Muratet, M., Simmons, B., Kloske, D., Sieja, S., Hudson, J., Sethupathy, P., Brownstein, M., Bhat, N., Lazar, J., Jacob, H., Gruber, C. E., Smith, M. R., McPherson, J., Garcia, A. M., Gunaratne, P. H., Wu, J., Muzny, D., Gibbs, R. A., Young, A. C., Bouffard, G. G., Blakesley, R. W., Mullikin, J., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Hirst, M., Zeng, T., Tse, K., Moksa, M., Deng, M., Ma, K., Mah, D., Pang, J., Taylor, G., Chuah, E., Deng, A. (December 2009) The completion of the Mammalian Gene Collection (MGC). Genome Research, 19 (12). pp. 2324-33. ISSN 1088-9051
Thome, J., Duman, R. S., Henn, F. A. (July 2002) Molecular aspects of antidepressive therapy. Transsynaptic effects on signal transduction, gene expression and neuronal plasticity. Nervenarzt, 73 (7). pp. 595-9. ISSN 0028-2804 (Print)0028-2804 (Linking)
Thome, J., Retz, W., Baader, M., Pesold, B., Hu, M., Cowen, M., Durany, N., Adler, G., Henn, F. A., Rosler, M. (2001) Association analysis of HTR6 and HTR2A polymorphisms in sporadic Alzheimer's disease. J Neural Transm, 108 (10). pp. 1175-80. ISSN 0300-9564 (Print)0300-9564 (Linking)
Thorburn, A., Thorburn, J., Chen, S. Y., Powers, S., Shubeita, H. E., Feramisco, J. R., Chien, K. R. (January 1993) HRas-dependent pathways can activate morphological and genetic markers of cardiac muscle cell hypertrophy. Journal of Biological Chemistry, 268 (3). pp. 2244-9. ISSN 0021-9258
Timmermans, M. C. P., Hudson, A., Becraft, P. W., Nelson, T. (April 1999) ROUGH SHEATH2: A Myb protein that represses knox homeobox genes in maize lateral organ primordia. Science, 284 (5411). pp. 151-153. ISSN 0036-8075
Tollkuhn, J., Xu, X., Shah, N. M. (August 2010) A custody battle for the mind: evidence for extensive imprinting in the brain. Neuron, 67 (3). pp. 359-62. ISSN 1097-4199 (Electronic)0896-6273 (Linking)
Toussaint, A., Lefebvre, N., Scott, J. R., Cowan, J. A., de Bruijn, F., Bukhari, A. I. (August 1978) Relationships between temperate phages Mu and P1. Virology, 89 (1). pp. 146-61. ISSN 0042-6822 (Print)0042-6822 (Linking)
Tramantano, M., Sun, L., Au, C., Labuz, D., Liu, Z., Chou, M., Shen, C., Luk, E. (July 2016) Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)
Tripic, T., Deng, W., Cheng, Y., Zhang, Y., Vakoc, C. R., Gregory, G. D., Hardison, R. C., Blobel, G. A. (2009) SCL and associated proteins distinguish active from repressive GATA transcription factor complexes. Blood, 113 (10). pp. 2191-2201. ISSN 00064971 (ISSN)
Tuveson, D., Clevers, H. (June 2019) Cancer modeling meets human organoid technology. Science, 364 (6444). pp. 952-955. ISSN 0036-8075
Tworkowski, K. A., Chakraborty, A. A., Samuelson, A. V., Seger, Y. R., Narita, M., Hannon, G. J., Lowe, S. W., Tansey, W. P. (April 2008) Adenovirus E1A targets p400 to induce the cellular oncoprotein Myc. Proc Natl Acad Sci U S A, 105 (16). pp. 6103-6108.
V
Vakoc, C. R., Blobel, G. A., Wen, Y.-Y., Gibbs, R. A., Johnstone, C. N., Rustgi, A. K. (March 2009) Low frequency of MLL3 mutations in colorectal carcinoma. Cancer Genetics and Cytogenetics, 189 (2). pp. 140-141. ISSN 0165-4608
Vakoc, C. R., Letting, D. L., Gheldof, N., Sawado, T., Bender, M. A., Groudine, M., Weiss, M. J., Dekker, J., Blobel, G. A. (2005) Proximity among distant regulatory elements at the β-globin locus requires GATA-1 and FOG-1. Molecular Cell, 17 (3). pp. 453-462. ISSN 10972765 (ISSN)
Van Stry, M., Oguin Iii, T. H., Cheloufi, S., Vogel, P., Watanabe, M., Pillai, M. R., Dash, P., Thomas, P. G., Hannon, G. J., Bix, M. (2012) Enhanced susceptibility of Ago1/3 double-null mice to influenza a virus infection. Journal of Virology, 86 (8). pp. 4151-4157. ISSN 0022538X (ISSN)
Venglat, S. P., Dumonceaux, T., Rozwadowski, K., Parnell, L., Babic, V., Keller, W., Martienssen, R., Selvaraj, G., Datla, R. (April 2002) The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 99 (7). pp. 4730-5. ISSN 0027-8424 (Print)0027-8424 (Linking)
Venkatasubramani, J.P., Subramanyam, P., Pal, R., Reddy, B.K., Srinivasan, D.J., Chattarji, S., Iossifov, I., Klann, E., Bhattacharya, S. (March 2020) N-terminal Variant Asp14Asn of the Human p70 S6 Kinase 1 Enhances Translational Signaling Causing Different Effects in Developing and Mature Neuronal Cells. Neurobiology of Learning and Memory, 171 (107203). ISSN 1074-7427
Verleyen, W., Ballouz, S., Gillis, J. (March 2015) Measuring the wisdom of the crowds in network-based gene function inference. Bioinformatics, 31 (5). pp. 745-752. ISSN 1367-4803
Verster, A. J., Ramani, A. K., McKay, S. J., Fraser, A. G. (February 2014) Comparative RNAi Screens in C. elegans and C. briggsae Reveal the Impact of Developmental System Drift on Gene Function. Plos Genetics, 10 (2). e1004077. ISSN 1553-7390
Vestin, A., Mills, A. A. (October 2013) The tumor suppressor Chd5 is induced during neuronal differentiation, in the developing mouse brain. Gene Expression Patterns, 13 (8). pp. 482-489. ISSN 1872-7298 (Electronic)1567-133X (Linking)
Vetukhiv, M., Wallace, Bruce (1955) Adaptive organization of the gene pools pf Drosophilia populations. In: Cold Spring Harbor Symposia on Quantitative Biology XX: Population Genetics: the nature and causes of genetic variability in populations, Cold Spring Harbor, NY.
Vidal, E. A., Moyano, T. C., Krouk, G., Katari, M. S., Tanurdzic, M., McCombie, W. R., Coruzzi, G. M., Gutierrez, R. A. (October 2013) Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 14. p. 701. ISSN 1471-2164
Vinar, T., Brejova, B., Song, G., Siepel, A. (September 2010) Reconstructing histories of complex gene clusters on a phylogeny. J Comput Biol, 17 (9). pp. 1267-79. ISSN 1066-5277
van Oordt, W. V., Diaz-Meco, M. T., Lozano, J., Krainer, A. R., Moscat, J., Caceres, J. F. (April 2000) The MKK3/6-p38-signaling cascade alters the subcellular distribution of hnRNP A1 and modulates alternative splicing regulation. Journal of Cell Biology, 149 (2). pp. 307-316. ISSN 0021-9525
van der Horst, E. H., Degenhardt, Y. Y., Strelow, A., Slavin, A., Chinn, L., Orf, J., Rong, M., Li, S., See, L. H., Nguyen, K. Q., Hoey, T., Wesche, H., Powers, S. (November 2005) Metastatic properties and genomic amplification of the tyrosine kinase gene ACK1. Proceedings of the National Academy of Sciences of the United States of America, 102 (44). pp. 15901-6. ISSN 0027-8424
van der Knaap, E., Lippman, Z. B., Tanksley, S. D. (February 2002) Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions. Theoretical and Applied Genetics, 104 (2-3). pp. 241-247. ISSN 0040-5752
W
Wall, M., Poortinga, G., Stanley, K. L., Lindemann, R. K., Bots, M., Chan, C. J., Bywater, M. J., Kinross, K. M., Astle, M. V., Waldeck, K., Hannan, K. M., Shortt, J., Smyth, M. J., Lowe, S. W., Hannan, R. D., Pearson, R. B., Johnstone, R. W., McArthur, G. A. (January 2013) The mTORC1 inhibitor everolimus prevents and treats Eμ-Myc lymphoma by restoring oncogene-induced senescence. Cancer Discovery, 3 (1). pp. 82-95. ISSN 21598274
Wallace, T. P., Stewart, A. C., Pappin, D., Howe, C. J. (1989) Gene sequence for the 9 kDa component of Photosystem II from the cyanobacterium Phormidium laminosum indicates similarities between cyanobacterial and other leader sequences. Molecular & General Genetics, 216 (2-3). pp. 334-339. ISSN 00268925 (ISSN)
Walsh, T., McClellan, J. M., McCarthy, S. E., Addington, A. M., Pierce, S. B., Cooper, G. M., Nord, A. S., Kusenda, M., Malhotra, D., Bhandari, A., Stray, S. M., Rippey, C. F., Roccanova, P., Makarov, V., Lakshmi, B., Findling, R. L., Sikich, L., Stromberg, T., Merriman, B., Gogtay, N., Butler, P., Eckstrand, K., Noory, L., Gochman, P., Long, R., Chen, Z., Davis, S., Baker, C., Eichler, E. E., Meltzer, P. S., Nelson, S. F., Singleton, A. B., Lee, M. K., Rapoport, J. L., King, M. C., Sebat, J. (April 2008) Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. Science, 320 (5875). pp. 539-43.
Wang, D., Pan, E., Fang, G., Kumari, S., He, F., Ware, D., Maslov, S., Gerstein, M. (September 2013) Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between arabidopsis and poplar. 2013 4th ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013 . ACM, pp. 689-690. ISBN 9781450324342 (ISBN)
Wang, J., Xie, L. Y., Allan, S., Beach, D., Hannon, G. J. (1998) Myc activates telomerase. Genes and Development, 12 (12). pp. 1769-1774. ISSN 08909369 (ISSN)
Wang, P. C., Vancura, A., Mitcheson, T. G., Kuret, J. (March 1992) Two genes in Saccharomyces cerevisiae encode a membrane-bound form of casein kinase-1. Mol Biol Cell, 3 (3). pp. 275-86. ISSN 1059-1524 (Print)1059-1524 (Linking)
Wang, Y., Leonard, M. K., Snyder, D. E., Fisher, M. L., Eckert, R. L., Kaetzel, D. M. (August 2019) NME1 Drives Expansion of Melanoma Cells with Enhanced Tumor Growth and Metastatic Properties. Mol Cancer Res, 17 (8). pp. 1665-1674. ISSN 1541-7786
Wang, B., Tseng, E., Baybayan, P., Eng, K., Regulski, M., Jiao, Y., Wang, L., Olson, A., Chougule, K., Buren, P. V., Ware, D. (February 2020) Variant phasing and haplotypic expression from long-read sequencing in maize. Commun Biol, 3 (1). p. 78. ISSN 2399-3642 (Public Dataset)
Wanner, L. A., Li, G., Ware, D., Somssich, I. E., Davis, K. R. (January 1995) The phenylalanine ammonia-lyase gene family in Arabidopsis thaliana. Plant Mol Biol, 27 (2). pp. 327-38. ISSN 0167-4412 (Print)
Ware, D., Stein, L. (April 2003) Comparison of genes among cereals. Current Opinion in Plant Biology, 6 (2). pp. 121-7. ISSN 1369-5266
Warek, U., Bedell, J., Martienssen, R., Rabinowicz, P. (June 2005) Methylation filtration - A path to rapid gene discovery. Phytopathology, 95 (6). S109-S109. ISSN 0031-949X
Watts, J. A., Zhang, C. L., Klein-Szanto, A. J., Kormish, J. D., Fu, J., Zhang, M. Q., Zaret, K. S. (September 2011) Study of FoxA Pioneer Factor at Silent Genes Reveals Rfx-Repressed Enhancer at Cdx2 and a Potential Indicator of Esophageal Adenocarcinoma Development. PLoS Genetics, 7 (9). ISSN 1553-7390
Weaver, Z., Montagna, C., Xu, X. L., Howard, T., Gadina, M., Brodie, S. G., Deng, C. X., Ried, T. (August 2002) Mammary tumors in mice conditionally mutant for Brca1 exhibit gross genomic instability and centrosome amplification yet display a recurring distribution of genomic imbalances that is similar to human breast cancer. Oncogene, 21 (33). pp. 5097-5107. ISSN 0950-9232
Weber, J., Hassell, J. A. (September 1979) Genetic analysis of adenovirus type 2. IX. The physical locations of structural genes. J Gen Virol, 44 (3). pp. 639-55. ISSN 0022-1317 (Print)0022-1317 (Linking)
Weil, C., Martienssen, R. (April 2008) Epigenetic interactions between transposons and genes: lessons from plants. Current opinion in genetics & development, 18 (2). pp. 188-92. ISSN 0959-437X (Print)0959-437X (Linking)
Weissmueller, S., Manchado, E., Saborowski, M., Morris, J. P. th, Wagenblast, E., Davis, C. A., Moon, S. H., Pfister, N. T., Tschaharganeh, D. F., Kitzing, T., Aust, D., Markert, E. K., Wu, J., Grimmond, S. M., Pilarsky, C., Prives, C., Biankin, A. V., Lowe, S. W. (April 2014) Mutant p53 Drives Pancreatic Cancer Metastasis through Cell-Autonomous PDGF Receptor beta Signaling. Cell, 157 (2). pp. 382-94. ISSN 1097-4172 (Electronic)0092-8674 (Linking)
Welch, J. J., Watts, J. A., Vakoc, C. R., Yao, Y., Wang, H., Hardison, R. C., Blobel, G. A., Chodosh, L. A., Weiss, M. J. (2004) Global regulation of erythroid gene expression by transcription factor GATA-1. Blood, 104 (10). pp. 3136-3147. ISSN 00064971 (ISSN)
Werner, Jonathan M (December 2023) Transcriptomic approaches for investigating developmental lineage: exploiting the X-chromosome as a marker for lineage specification and quantifying the lineage fidelity of neural organoid systems. PhD thesis, Cold Spring Harbor Laboratory.
Whipple, C. J., Kebrom, T. H., Weber, A. L., Yang, F., Hall, D., Meeley, R., Schmidt, R., Doebley, J., Brutnell, T. P., Jackson, D. P. (August 2011) grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses. Proceedings of the National Academy of Sciences of the United States of America, 108 (33). E506-E512. ISSN 0027-8424
Wigler, M. H., Fasano, O., Taparowsky, E., Powers, S., Kataoka, T., Birnbaum, D., Shimizu, K., Goldfarb, M. (1984) Structure and Activation of Ras Genes. In: Oncogenes and viral genes. Cancer cells, 2 (ED.). Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 419-424. ISBN 0879691697
Wilson, A. C., Parrish, J. E., Massa, H. F., Nelson, D. L., Trask, B. J., Herr, W. (January 1995) The gene encoding the VP16-accessory protein HCF (HCFC1) resides in human Xq28 and is highly expressed in fetal tissues and the adult kidney. Genomics, 25 (2). pp. 462-8. ISSN 0888-7543 (Print)
Wines, M. E., Lee, L., Katari, M. S., Zhang, L., DeRossi, C., Shi, Y., Perkins, S., Feldman, M., McCombie, W. Richard, Holdener, B. C. (2001) Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis. Genomics, 72 (1). pp. 88-98. ISSN 08887543 (ISSN)
Witkowski, J. A. (1997) Introduction to WCN Biotechnology Gene Therapy Symposium.
Wrzeszczynski, K. O., Varadan, V., Kamalakaran, S., Levine, D. A., Dimitrova, N., Lucito, R. (August 2013) Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer. Methods Mol Biol, 1049. pp. 35-51. ISSN 1940-6029 (Electronic)1064-3745 (Linking)
Wu, Q., Zhang, T., Cheng, J. F., Kim, Y., Grimwood, J., Schmutz, J., Dickson, M., Noonan, J. P., Zhang, M. Q., Myers, R. M., Maniatis, T. (March 2001) Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Research, 11 (3). pp. 389-404. ISSN 1088-9051
Wu, X., Jiang, R., Zhang, M. Q., Li, S. (2008) Network-based global inference of human disease genes. Mol Syst Biol, 4. p. 189.
X
Xiang, B., Chatti, K., Qiu, H., Lakshmi, B., Krasnitz, A., Hicks, J. B., Yu, M., Miller, W. T., Muthuswamy, S. K. (August 2008) Brk is coamplified with ErbB2 to promote proliferation in breast cancer. Proc Natl Acad Sci U S A, 105 (34). pp. 12463-8.
Xu, R. M. (June 2003) A pivotal role of the coiled coil of Sir4. Structure, 11 (6). pp. 608-609. ISSN 0969-2126
Xu, X., Crow, M., Rice, B. R., Li, F., Harris, B., Liu, L., Demesa-Arevalo, E., Lu, Z., Wang, L., Fox, N., Wang, X., Drenkow, J., Luo, A., Char, S. N., Yang, B., Sylvester, A. W., Gingeras, T. R., Schmitz, R. J., Ware, D., Lipka, A. E., Gillis, J., Jackson, D. (December 2020) Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Dev Cell, S1534- (20). pp. 31021-31022. ISSN 1534-5807
Xu, Xiaosa, Jackson, David (December 2022) Single-cell analysis opens a goldmine for plant functional studies. Current Opinion in Biotechnology, 79. p. 102858. ISSN 0958-1669
Xue, B., Krishnamurthy, K., Allred, D. C., Muthuswamy, S. K. (2013) Loss of Par3 promotes breast cancer metastasis by compromising cell-cell cohesion. Nature Cell Biology, 15 (2). pp. 189-200. ISSN 1465-7392
Xue, W., Krasnitz, A., Lucito, R., Sordella, R., Van Aelst, L., Cordon-Cardo, C., Singer, S., Kuehnel, F., Wigler, M. H., Powers, S., Zender, L., Lowe, S. W. (June 2008) DLC1 is a chromosome 8p tumor suppressor whose loss promotes hepatocellular carcinoma. Genes & Development, 22 (11). pp. 1439-44. ISSN 0890-9369
Y
Yaeger, Rona, Mezzadra, Riccardo, Sinopoli, Jenna, Bian, Yu, Marasco, Michelangelo, Kaplun, Esther, Gao, Yijun, Zhao, HuiYong, Paula, Arnaud Da Cruz, Zhu, Yingjie, Perez, Almudena Chaves, Chadalavada, Kalyani, Tse, Edison, Chowdhry, Sudhir, Bowker, Sydney, Chang, Qing, Qeriqi, Besnik, Weigelt, Britta, Nanjangud, Gouri J, Berger, Michael F, Der-Torossian, Hirak, Anderes, Kenna, Socci, Nicholas D, Shia, Jinru, Riely, Gregory J, Murciano-Goroff, Yonina R, Li, Bob T, Christensen, James G, Reis-Filho, Jorge S, Solit, David B, de Stanchina, Elisa, Lowe, Scott W, Rosen, Neal, Misale, Sandra (January 2023) Molecular Characterization of Acquired Resistance to KRASG12C-EGFR Inhibition in Colorectal Cancer. Cancer Discovery, 13 (1). pp. 41-55. ISSN 2159-8274
Yajnik, V., Paulding, C., Sordella, R., McClatchey, A. I., Saito, M., Wahrer, D. C., Reynolds, P., Bell, D. W., Lake, R., van den Heuvel, S., Settleman, J., Haber, D. A. (March 2003) DOCK4, a GTPase activator, is disrupted during tumorigenesis. Cell, 112 (5). pp. 673-84. ISSN 0092-8674 (Print)
Yang, F., Bui, H. T., Pautler, M., Llaca, V., Johnston, R., Lee, B. H., Kolbe, A., Sakai, H., Jackson, D. (January 2015) A Maize Glutaredoxin Gene, Abphyl2, Regulates Shoot Meristem Size and Phyllotaxy. Plant Cell, 27 (1). pp. 121-131. ISSN 1040-4651
Yang, M., Hu, Y., Lodhi, M., McCombie, W. R., Ma, H. (1999) The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation. Proceedings of the National Academy of Sciences of the United States of America, 96 (20). pp. 11416-11421. ISSN 00278424 (ISSN)
Yang, X. H., Sham, J. S. T., Ng, M. H., Tsao, S. W., Zhang, D. K., Lowe, S. W., Cao, L. (January 2000) LMP1 of Epstein-Barr virus induces proliferation of primary mouse embryonic fibroblasts and cooperatively transforms the cells with a p16-insensitive CDK4 oncogene. Journal of Virology, 74 (2). pp. 883-891. ISSN 0022-538X
Yang, Yang, Paul, Anirban, Bach, Thao Nguyen, Huang, Z Josh, Zhang, Michael Q (July 2021) Single-cell alternative polyadenylation analysis delineates GABAergic neuron types. BMC Biology, 19 (1). p. 144. ISSN 1741-7007
Yang, Zhaolin, Wu, Xiaoli S, Wei, Yiliang, Polyanskaya, Sofya A, Iyer, Shruti V, Jung, Moonjung, Lach, Francis P, Adelman, Emmalee R, Klingbeil, Olaf, Milazzo, Joseph P, Kramer, Melissa, Demerdash, Osama E, Chang, Kenneth, Goodwin, Sara, Hodges, Emily, McCombie, W Richard, Figueroa, Maria E, Smogorzewska, Agata, Vakoc, Christopher R (April 2021) Transcriptional silencing of ALDH2 confers a dependency on Fanconi anemia proteins in acute myeloid leukemia. Cancer Discovery. ISSN 2159-8274
Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S, Aldridge, Andrew I, Ament, Seth A, Bartlett, Anna, Behrens, M Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L, Doyle, Wayne I, Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R, Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D, Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M, Nery, Joseph R, Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K, Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C, Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R, van Velthoven, Cindy, Wang, Xinxin, White, Owen R, Huang, Z Josh, Kharchenko, Peter V, Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D, Gillis, Jesse, Macosko, Evan Z, Ren, Bing, Ecker, Joseph R, Zeng, Hongkui, Mukamel, Eran A (October 2021) A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature, 598 (7879). pp. 103-110. ISSN 0028-0836
Young, D., O'Neill, K., Broek, D., Wigler, M. H. (June 1991) The adenylyl cyclase-encoding gene from Saccharomyces kluyveri. Gene, 102 (1). pp. 129-32. ISSN 0378-1119
Yu, M., Lin, G., Arshadi, N., Kalatskaya, I., Xue, B., Haider, S., Nguyen, F., Boutros, P. C., Elson, A., Muthuswamy, L. B., Tonks, N. K., Muthuswamy, S. K. (October 2012) Expression profiling during mammary epithelial cell 3D morphogenesis identifies PTPRO as a novel regulator of morphogenesis and ErbB2 mediated transformation. Mol Cell Biol, 32 (19). pp. 3913-3924. ISSN 1098-5549 (Electronic)0270-7306 (Linking)
Yu, Y., Rambo, T., Currie, J., Saski, C., Kim, H. R., Collura, K., Thompson, S., Simmons, J., Yang, T. J., Nah, G., Patel, A. J., Thurmond, S., Henry, D., Oates, R., Palmer, M., Pries, G., Gibson, J., Anderson, H., Paradkar, M., Crane, L., Dale, J., Carver, M. B., Wood, T., Frisch, D., Engler, F., Soderlund, C., Palmer, L. E., Tetylman, L., Nascimento, L., de la Bastide, M., Spiegel, L., Ware, D., O'Shaughnessy, A., Dike, S., Dedhia, N., Preston, R., Huang, E., Ferraro, K., Kuit, K., Miller, B., Zutavern, T., Katzenberger, F., Muller, S., Balija, V., Martienssen, R. A., Stein, L., Minx, P., Johnson, D., Cordum, H., Mardis, E., Cheng, Z., Jiang, J., Wilson, R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Jones, K. M., Gansberger, K., Moffat, K., Hill, J., Tsitrin, T., Overton, L., Bera, J., Kim, M., Jin, S., Tallon, L., Ciecko, A., Pai, G., van Aken, S., Utterback, T., Reidmuller, S., Bormann, J., Feldblyum, T., Hsiao, J., Zismann, V., Blunt, S., de Vazeilles, A., Shaffer, T., Koo, H., Suh, B., Yang, Q., Haas, B., Peterson, J., Pertea, M., Volfovsky, N., Wortman, J., White, O., Salzberg, S. L., Fraser, C. M., Robin Buell, C., Messing, J., Song, R., Fuks, G., Llaca, V., Kovchak, S., Young, S., Bowers, J. E., Paterson, A. H. (2003) In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 300 (5625). pp. 1566-1569. ISSN 00368075 (ISSN)
Z
Zain, B. S., Roberts, R. J. (June 1979) Sequences from the beginning of the fiber messenger RNA of adenovirus-2. J Mol Biol, 131 (2). pp. 341-52. ISSN 0022-2836 (Print)0022-2836 (Linking)
Zebell, S. G. (October 2020) Excising the Mystery of Single-Guide RNA Processing. Plant Physiol, 184 (2). pp. 572-573. ISSN 0032-0889 (Print)0032-0889
Zebell, Sophia (March 2021) Gene body silencing parental alleles for vigorous hybrid rice. Plant Physiology, 186 (2). pp. 822-823. ISSN 0032-0889
Zelko, I., Kobayashi, R., Negishi, M. (May 2000) Repression of phenobarbital-responsive enhancer module in the Cyp2b10 gene by estrogen receptor-related receptor ERR. Faseb Journal, 14 (8). A1433-A1433. ISSN 0892-6638
Zender, L., Lowe, S. W. (January 2008) Integrative oncogenomic approaches for accelerated cancer-gene discovery. Curr Opin Oncol, 20 (1). pp. 72-6.
Zeng, H., Wang, Y., Zhang, Y. (1998) Molecular cloning of a chitinase gene from Bacillus circulans C-2. Chinese Journal of Biotechnology, 14 (1). pp. 25-9. ISSN 1042-749X
Zeng, P. Y., Vakoc, C. R., Chen, Z. C., Blobel, G. A., Berger, S. L. (2006) In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation. Biotechniques, 41 (6). pp. 694-698. ISSN 07366205 (ISSN)
Zhang, H., Hannon, G. J., Beach, D. (1994) p21-Containing cyclin kinases exist in both active and inactive states. Genes and Development, 8 (15). pp. 1750-1758. ISSN 08909369 (ISSN)
Zhang, H., Hannon, G. J., Casso, D., Beach, D. (1994) p21 is a component of active cell cycle kinases. Cold Spring Harbor Symposia on Quantitative Biology, 59. pp. 21-29. ISSN 00917451 (ISSN)
Zhang, M. Q. (September 2002) Computational prediction of eukaryotic protein-coding genes. Nature Reviews Genetics, 3 (9). pp. 698-709. ISSN 1471-0056
Zhang, M. Q. (January 1997) Identification of protein coding regions in the human genome by quadratic discriminant analysis. Proceedings of the National Academy of Sciences, 94 (2). pp. 565-8. ISSN 0027-8424 (Print)
Zhang, M. Q. (August 1999) Large-scale gene expression data analysis: a new challenge to computational biologists. Genome Research, 9 (8). pp. 681-8. ISSN 1088-9051 (Print)
Zhang, M. Q. (May 1998) Statistical features of human exons and their flanking regions. Human Molecular Genetics, 7 (5). pp. 919-32. ISSN 0964-6906 (Print)
Zhang, T., Zhang, M. (December 2001) Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes. Bioinformatics, 17 (12). pp. 1232-1233. ISSN 1367-4803
Zhang, Y., Mei, P. C., Lou, R., Zhang, M. Q., Wu, G. Y., Qiang, B. Q., Zhang, Z. G., Shen, Y. (October 2002) Gene expression profiling in developing human hippocampus. Journal of Neuroscience Research, 70 (2). pp. 200-208. ISSN 0360-4012
Zhang, Y., Shin, S. J., Liu, D., Ivanova, E., Foerster, F., Ying, H., Zheng, H., Xiao, Y., Chen, Z., Protopopov, A., Depinho, R. A., Paik, J. H. (June 2013) ZNF365 Promotes Stability of Fragile Sites and Telomeres. Cancer Discovery, 3 (7). pp. 798-811. ISSN 21598274
Zhang, R, Atwal, GS, Lim, WK (March 2021) Noise regularization removes correlation artifacts in single-cell RNA-seq data preprocessing. Patterns, 2 (3). p. 100211. ISSN 2666-3899
Zhao, Guodong, Ge, Qinyu, Lan, Wenjun, Zheng, Bo, Liang, Yuting (December 2023) Editorial: Advance in translational genomics based biomarkers for cancer management: discovery and application. Frontiers in Genetics, 14. p. 1342616. ISSN 1664-8021
Zheng, J. Y., Sachidanandam, R., Bennett, K., Bonkovsky, H. L. (October 2008) Microrna 16 Regulates Expression of the Human 5-Aminolevulinic Acid Synthase-1 (Alas 1) Gene through Targeting the Coding Region of the Gene. Hepatology, 48 (4 Supp). 1117A. ISSN 0270-9139
Zheng, S. Y., Tansey, W. P., Hiebert, S. W., Zhao, Z. M. (August 2011) Integrative network analysis identified key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma. BMC Medical Genomics, 4 (62). ISSN 1755-8794
Zhong, Y. (November 2011) Talk from Yi Zhong at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)
Zhu, J., Zhang, M. Q. (January 2000) Cluster, function and promoter: analysis of yeast expression array. In: Pacific Symposium on Biocomputing.
Zuber, J., Rappaport, A. R., Luo, W., Wang, E., Chen, C., Vaseva, A. V., Shi, J., Weissmueller, S., Fellman, C., Taylor, M. J., Weissenboeck, M., Graeber, T. G., Kogan, S. C., Vakoc, C. R., Lowe, S. W. (August 2011) An integrated approach to dissecting oncogene addiction implicates a Myb-coordinated self-renewal program as essential for leukemia maintenance. Genes & Development, 25 (15). pp. 1628-1640. ISSN 0890-9369
Š
Šafarič Tepeš, Polona, Sordella, Raffaella (September 2021) A New Toolkit for Evaluating Gene Functions using Conditional Cas9 Stabilization. Journal of Visualized Experiments (175). ISSN 1940-087X