Items where Subject is "bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > DNA replication"

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Number of items at this level: 270.

A

Alcorta, D. A., Xiong, Y., Phelps, D., Hannon, G., Beach, D., Barrett, J. C. (1996) Involvement of the cyclin-dependent kinase inhibitor p16 (INK4a) in replicative senescence of normal human fibroblasts. Proceedings of the National Academy of Sciences of the United States of America, 93 (24). pp. 13742-13747. ISSN 00278424 (ISSN)

Alexandre, C., Gilman, M. (1993) Interaction of Mcm1 with Members of the Kappa-B/Rel Family. Journal of Cellular Biochemistry, 53 (Supple). p. 142. ISSN 0730-2312

Allsopp, R. C., Vaziri, H., Patterson, C., Goldstein, S., Younglai, E. V., Futcher, A. B., Greider, C. W., Harley, C. B. (1992) Telomere length predicts replicative capacity of human fibroblasts. Proc Natl Acad Sci U S A, 89 (21). pp. 10114-8. ISSN 0027-8424 (Print)0027-8424 (Linking)

Arrand, J. R., Roberts, R. J. (1979) The nucleotide sequences at the termini of adenovirus-2 DNA. Journal of Molecular Biology, 128 (4). pp. 577-594. ISSN 0022-2836

Auster, A. S., Joshua-Tor, L. (2004) The DNA-binding domain of human papillomavirus type 18 E1. Crystal structure, dimerization, and DNA binding. J Biol Chem, 279 (5). pp. 3733-42. ISSN 0021-9258 (Print)

Autexier, C., Greider, C. W. (1995) Boundary elements of the Tetrahymena telomerase RNA template and alignment domains. Genes Dev, 9 (18). pp. 2227-39. ISSN 0890-9369 (Print)

B

Bazarov, A. V., Jae Lee, W., Bazarov, I., Bosire, M., Hines, W. C., Stankovich, B., Chicas, A., Lowe, S. W., Yaswen, P. (2012) The specific role of pRb in p16(INK4A)-mediated arrest of normal and malignant human breast cell. Cell Cycle, 11 (5). ISSN 1551-4005 (Electronic)1551-4005 (Linking)

Bell, S. P., Stillman, B. (1992) ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature, 357 (6374). pp. 128-34. ISSN 0028-0836 (Print)0028-0836 (Linking)

Bell, S., Li, J., Walter, J. (2011) EUKARYOTIC DNA REPLICATION & GENOME MAINTENANCE. In: 2011 meeting on EUKARYOTIC DNA REPLICATION & GENOME MAINTENANCE, September 6–September 10, 2011.

Bell, S. P., Kobayashi, R., Stillman, B. (1993) Yeast origin recognition complex functions in transcription silencing and DNA replication. Science, 262 (5141). pp. 1844-9. ISSN 0036-8075 (Print)

Bell, S. P., Marahrens, Y., Rao, H., Stillman, B. (1993) The replicon model and eukaryotic chromosomes. Cold Spring Harbor Symposia on Quantitative Biology, 58. pp. 435-442. ISSN 00917451 (ISSN)

Bell, S. P., Mitchell, J., Leber, J., Kobayashi, R., Stillman, B. (1995) The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing. Cell, 83 (4). pp. 563-8. ISSN 0092-8674 (Print)

Berenstein, D., Olesen, K., Speck, C., Skovgaard, O. (2002) Genetic organization of the Vibrio harveyi dnaA gene region and analysis of the function of the V-harveyi DnaA protein in Escherichia coli. Journal of Bacteriology, 184 (9). 2533-+. ISSN 0021-9193

Berg, L., Lusky, M., Stenlund, A., Botchan, M. R. (1986) Repression of bovine papilloma virus replication is mediated by a virally encoded trans-acting factor. Cell, 46 (5). pp. 753-62. ISSN 0092-8674 (Print)0092-8674 (Linking)

Berg, M., Stenlund, A. (1997) Functional interactions between papillomavirus E1 and E2 proteins. J Virol, 71 (5). pp. 3853-63. ISSN 0022-538X (Print)

Brenner, M., Münch, J., Schindler, M., Wildum, S., Stolte, N., Stahl-Hennig, C., Fuchs, D., Mätz-Rensing, K., Franz, M., Heeney, J. L., Ten Haaft, P., Swigut, T., Hrecka, K., Skowronski, J., Kirchhoff, F. (2006) Importance of the N-distal AP-2 binding element in Nef for simian immunodeficiency virus replication and pathogenicity in rhesus macaques. Journal of Virology, 80 (9). pp. 4469-4481. ISSN 0022538X

Brill, S. J., Stillman, B. (1992) DNA-Replication in Human and Yeast-Cells. Faseb Journal, 6 (1). A538-A538. ISSN 0892-6638

Brill, S. J., Stillman, B. (1991) Replication factor-A from Saccharomyces cerevisiae is encoded by three essential genes coordinately expressed at S phase. Genes and Development, 5 (9). pp. 1589-600. ISSN 08909369 (ISSN)

Brill, S. J., Stillman, B. (1989) Yeast replication factor-A functions in the unwinding of the SV40 origin of DNA replication. Nature, 342 (6245). pp. 92-5. ISSN 0028-0836

Broach, J. R., Hicks, J. B. (1980) Replication and recombination functions associated with the yeast plasmid, 2μ circle. Cell, 21 (2). pp. 501-508.

Broach, J. R., Li, Y. Y., Feldman, J., Jayaram, M., Abraham, J., Nasmyth, K. A., Hicks, J. B. (1982) Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symposia on Quantitative Biology, 47 (2). pp. 1165-1173. ISSN 00917451 (ISSN)

Brown, G. W., Melendy, T., Ray, D. S. (1993) Replication Protein-a from the Trypanosomatid Crithidia-Fasciculata Is Inactive in the Primosome Assembly Step of Sv40 DNA-Replication. Molecular and Biochemical Parasitology, 59 (2). pp. 323-325. ISSN 0166-6851

Brown, G. W., Melendy, T. E., Ray, D. S. (1992) Conservation of structure and function of DNA replication protein A in the trypanosomatid Crithidia fasciculata. Proc Natl Acad Sci U S A, 89 (21). pp. 10227-31. ISSN 0027-8424 (Print)0027-8424 (Linking)

Brush, G. S., Kelly, T. J., Stillman, B. (1995) Identification of eukaryotic DNA replication proteins using simian virus 40 in vitro replication system. Methods in Enzymology, 262. pp. 522-548. ISSN 00766879 (ISSN)

Bukhari, A. I., Dubow, M. S., Khatoon, H., Ambrosio, L., Debruijn, F., Ljungquist, E. (1979) Integration of bacteriophage mu DNA. Cold Spring Harb Symp Quant Biol, 43. pp. 1151-8.

Bunz, F., Kobayashi, R., Stillman, B. (1993) cDNAs encoding the large subunit of human replication factor C. Proc Natl Acad Sci U S A, 90 (23). pp. 11014-8. ISSN 0027-8424 (Print)

C

Castel, S. E. (2014) Transcriptional regulation in the context of DNA replication by RNA interference in fission yeast. PhD thesis, Cold Spring Harbor Laboratory.

Chen, G., Stenlund, A. (1998) Characterization of the DNA-binding domain of the bovine papillomavirus replication initiator E1. J Virol, 72 (4). pp. 2567-76. ISSN 0022-538X (Print)

Chen, G., Stenlund, A. (2001) The E1 initiator recognizes multiple overlapping sites in the papillomavirus origin of DNA replication. Journal of Virology, 75 (1). pp. 292-302. ISSN 0022-538X

Chen, G., Stenlund, A. (2002) Sequential and ordered assembly of E1 initiator complexes on the papillomavirus origin of DNA replication generates progressive structural changes related to melting. Molecular and Cellular Biology, 22 (21). pp. 7712-7720. ISSN 0270-7306

Chen, G., Stenlund, A. (2000) Two patches of amino acids on the E2 DNA binding domain define the surface for interaction with E1. Journal of Virology, 74 (3). pp. 1506-1512. ISSN 0022-538X

Chen, Z. Q., Speck, C., Wendel, P., Tang, C. Y., Stillman, B., Lill, H. L. (2008) The architecture of the DNA replication origin recognition complex in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America, 105 (30). pp. 10326-10331. ISSN 0027-8424

Chiang, C. M., Ustav, M., Stenlund, A., Ho, T. F., Broker, T. R., Chow, L. T. (1992) Viral-E1 and Viral-E2 Proteins Support Replication of Homologous and Heterologous Papillomaviral Origins. Proceedings of the National Academy of Sciences of the United States of America, 89 (13). pp. 5799-5803. ISSN 0027-8424

Chong, J. P. J., Hayashi, M. K., Simon, M. N., Xu, R. M., Stillman, B. (2000) A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase. Proceedings of the National Academy of Sciences of the United States of America, 97 (4). pp. 1530-1535. ISSN 0027-8424

Cullmann, G., Fien, K., Kobayashi, R., Stillman, B. (1995) Characterization of the five replication factor C genes of Saccharomyces cerevisiae. Molecular and Cellular Biology, 15 (9). pp. 4661-71. ISSN 0270-7306

Cuvier, O., Hirano, T. (2003) A role of topoisomerase II in linking DNA replication to chromosome condensation. Journal of Cell Biology, 160 (5). pp. 645-655. ISSN 0021-9525

D

D'Urso, G., Marraccino, R. L., Marshak, D. R., Roberts, J. M. (1990) Cell cycle control of DNA replication by a homologue from human cells of the p34cdc2 protein kinase. Science, 250 (4982). pp. 786-91. ISSN 0036-8075 (Print)0036-8075 (Linking)

Diffley, J. F., Stillman, B. (1986) Purification of a cellular, double-stranded DNA-binding protein required for initiation of adenovirus DNA replication by using a rapid filter-binding assay. Molecular and Cellular Biology, 6 (5). pp. 1363-73. ISSN 0270-7306

Diffley, J. F., Stillman, B. (1988) Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer. Proceedings of the National Academy of Sciences of the United States of America, 85 (7). pp. 2120-4. ISSN 0027-8424

Diffley, J. F., Stillman, B. (1989) Similarity between the transcriptional silencer binding proteins ABF1 and RAP1. Science, 246 (4933). pp. 1034-8. ISSN 0036-8075

Diffley, J. F., Stillman, B. (1991) A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 88 (17). pp. 7864-8. ISSN 0027-8424

Diffley, J. F. X., Stillman, B. (1992) ARS binding factors from Saccharomyces cerevisiae. In: DNA replication : the regulatory mechanisms. Springer-Verlag, Berlin, pp. 215-227. ISBN 0387546332

Diffley, J. F. X., Stillman, B. (1990) Ars Binding Factors in DNA Replication and Transcriptional Silencing. Yeast, 6 (SPEC. ). S12.

Diffley, J. F. X., Stillman, B. (1990) The Initiation of Chromosomal DNA Replication in Eukaryotes. Trends in Genetics, 6 (12). pp. 427-432. ISSN 0168-9525

Diffley, J. F. X., Stillman, B. (1988) Interactions between Purified Cellular Proteins and Yeast Origins of DNA Replication. In: Eukaryotic DNA replication. Cancer cells, 6 . Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 235-244. ISBN 0879693088

Diffley, J. F. X., Stillman, B. W. (1986) Characterization of Protein Which Binds Specifically to a Putative Origin of Cellular DNA-Replication. Journal of Cellular Biochemistry, 32 (S10B). p. 229. ISSN 0730-2312

Din, S., Brill, S. J., Fairman, M. P., Stillman, B. (1990) Cell-cycle-regulated phosphorylation of DNA replication factor A from human and yeast cells. Genes Dev, 4 (6). pp. 968-77. ISSN 0890-9369

Du, Y. C. N., Stillman, B. (2002) Yph1p, an ORC-interacting protein: Potential links between cell proliferation control, DNA replication, and ribosome biogenesis. Cell, 109 (7). pp. 835-848. ISSN 0092-8674

Dutta, A., Stillman, B. (1992) cdc2 family kinases phosphorylate a human cell DNA replication factor, RPA, and activate DNA replication. Embo J, 11 (6). pp. 2189-99. ISSN 0261-4189 (Print)

E

Ekholm-Reed, S., Mendez, J., Tedesco, D., Zetterberg, A., Stillman, B., Reed, S. I. (2004) Deregulation of cyclin E in human cells interferes with prereplication complex assembly. Journal of Cell Biology, 165 (6). pp. 789-800. ISSN 0021-9525

Ellison, V., Stillman, B. (2003) Biochemical characterization of DNA damage checkpoint complexes: Clamp loader and clamp complexes with specificity for 5' recessed DNA. Plos Biology, 1 (2). pp. 231-243. ISSN 1544-9173

Ellison, V., Stillman, B. (2001) Opening of the clamp: An intimate view of an ATP-driven biological machine. Cell, 106 (6). pp. 655-660. ISSN 0092-8674

Ellison, V., Stillman, B. (1998) Reconstitution of recombinant human replication factor C (RFC) and identification of an RFC subcomplex possessing DNA-dependent ATPase activity. Journal of Biological Chemistry, 273 (10). pp. 5979-87. ISSN 0021-9258

Enemark, E. J., Chen, G., Vaughn, D. E., Stenlund, A., Joshua-Tor, L. (2000) Crystal structure of the DNA binding domain of the replication initiation protein E1 from papillomavirus. Molecular Cell, 6 (1). pp. 149-158. ISSN 1097-2765

Enemark, E. J., Stenlund, A., Joshua-Tor, L. (2002) Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex. Embo Journal, 21 (6). pp. 1487-1496. ISSN 0261-4189

Evrin, C., Clarke, P., Zech, J., Lurz, R., Sun, J. C., Uhle, S., Li, H. L., Stillman, B., Speck, C. (2009) A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication. Proceedings of the National Academy of Sciences of the United States of America, 106 (48). pp. 20240-20245. ISSN 0027-8424

F

Fahy, E., Barringer, K. J., Kwoh, D. Y., Prodanovich, P., Gingeras, T. R. (1996) The self-sustained sequence replication (3SR) reaction and its application to the detection of mutations associated with Zidovudine resistance in HIV-1. In: PCR Protocols and Applications: Laboratory Manual. Academic Press, New York. ISBN 9780080886718

Fairman, M., Prelich, G., Tsurimoto, T., Stillman, B. (1988) Identification of cellular components required for SV40 DNA replication in vitro. Biochim Biophys Acta, 951 (2-3). pp. 382-7. ISSN 0006-3002

Fairman, M. P., Prelich, G., Stillman, B. (1987) Identification of multiple cellular factors required for SV40 replication in vitro. Philos Trans R Soc Lond B Biol Sci, 317 (1187). pp. 495-505. ISSN 0962-8436

Fairman, M. P., Prelich, G., Tsurimoto, T., Stillman, B. (1988) Characterization of Cellular Proteins Required for Sv40 DNA Replication in-Vitro. In: Eukaryotic DNA replication. Cancer Cells, 6 . Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 143-152. ISBN 0879693088

Fairman, M. P., Prelich, G., Tsurimoto, T., Stillman, B. (1989) Replication of SV40 in vitro using proteins derived from a human cell extract. J Cell Sci Suppl, 12. pp. 161-9. ISSN 0269-3518

Fairman, M. P., Stillman, B. (1988) Cellular factors required for multiple stages of SV40 DNA replication in vitro. Embo Journal, 7 (4). pp. 1211-8. ISSN 0261-4189

Fien, K., Stillman, B. (1992) Identification of replication factor C from Saccharomyces cerevisiae: a component of the leading-strand DNA replication complex. Molecular and Cellular Biology, 12 (1). pp. 155-63. ISSN 0270-7306

Funk, J. O., Waga, S., Harry, J. B., Espling, E., Stillman, B., Galloway, D. A. (1997) Inhibition of CDK activity and PCNA-dependent DNA replication by p21 is blocked by interaction with the HPV-16 E7 oncoprotein. Genes and Development, 11 (16). pp. 2090-2100. ISSN 08909369 (ISSN)

G

Gavin, K. A., Hidaka, M., Stillman, B. (1995) Conserved initiator proteins in eukaryotes. Science, 270 (5242). pp. 1667-71. ISSN 0036-8075 (Print)

Ghosh, S. S., Fahy, E., Gingeras, T. R. (1995) 13 - The Self-Sustained Sequence Replication Reaction and Its Application in Clinical Diagnostics and Molecular Biology. In: Molecular Methods for Virus Detection. Academic Press, San Diego, pp. 287-314. ISBN 978-0-12-748920-9

Ghosh, S. S., Fahy, E., Gingeras, T. R. (1995) The self-sustained sequence replication (3SR) reaction: Its practice and applications. In: Molecular Methods for Virus Detection. Academic Press, San Diego, pp. 287-313. ISBN 9780080536897

Gillitzer, E., Chen, G., Stenlund, A. (2000) Separate domains in E1 and E2 proteins serve architectural and productive roles for cooperative DNA binding. Embo Journal, 19 (12). pp. 3069-3079. ISSN 0261-4189

Gingeras, T. R., Biery, M., Goulden, M., Ghosh, S. S., Fahy, E. (1995) Optimization and Characterization of 3SR-based Assays. In: PCR primer: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp. 653-666. ISBN 9780879694487

Gingeras, T. R., Whitfield, K. M., Kwoh, D. Y. (1990) Unique features of the self-sustained sequence replication (3SR) reaction in the in vitro amplification of nucleic acids. Annales de Biologie Clinique, 48 (7). pp. 498-501. ISSN 00033898 (ISSN)

Grand, R. S., Martienssen, R., O'Sullivan, J. M. (2014) Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe. Mitochondrion, 17. pp. 141-9. ISSN 1567-7249

Grodzicker, T., Spector, D. L., Stewart, D., Stillman, B. (2010) Nuclear Organization & Function. In: Cold Spring Harbor Symposia on Quantitative Biology LXXV: Nuclear Organization and Function, June 2–June 7, 2010.

Guggenheimer, R. A., Stillman, B. W., Nagata, K., Tamanoi, F., Hurwitz, J. (1984) DNA-Sequences Required for the Invitro Replication of Adenovirus DNA. Proceedings of the National Academy of Sciences of the United States of America-Biological Sciences, 81 (10). pp. 3069-3073. ISSN 0027-8424

H

Heintz, N. H., Stillman, B. W. (1988) Nuclear-DNA Synthesis Invitro Is Mediated Via Stable Replication Forks Assembled in a Temporally Specific Fashion In vivo. Molecular and Cellular Biology, 8 (5). pp. 1923-1931. ISSN 0270-7306

Henderson, S., Allsopp, R., Spector, D., Wang, S. S., Harley, C. (1996) In situ analysis of changes in telomere size during replicative aging and cell transformation. Journal of Cell Biology, 134 (1). pp. 1-12. ISSN 0021-9525 (Print)0021-9525

Hirano, T. (2005) Cell biology - Holding sisters for repair. Nature, 433 (7025). pp. 467-468. ISSN 0028-0836

Hoek, M., Myers, M. P., Stillman, B. (2011) An analysis of CAF-1 interacting proteins reveals dynamic and direct interactions with the ku complex and 14-3-3 proteins. Journal of Biological Chemistry, 286 (12). pp. 10876-10887. ISSN 0021-9258

Hofmann, J. F., Beach, D. (1994) cdt1 is an essential target of the Cdc10/Sct1 transcription factor: requirement for DNA replication and inhibition of mitosis. Embo J, 13 (2). pp. 425-34. ISSN 0261-4189 (Print)

Holmes, A., Roseaulin, L., Schurra, C., Waxin, H., Lambert, S., Zaratiegui, M., Martienssen, R. A., Arcangioli, B. (2012) Lsd1 and Lsd2 Control Programmed Replication Fork Pauses and Imprinting in Fission Yeast. Cell Reports, 2 (6). pp. 1513-1520. ISSN 2211-1247

Hossain, M., Stillman, B. (2016) Opposing roles for DNA replication initiator proteins ORC1 and CDC6 in control of Cyclin E gene transcription. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Hu, J., Levin, P., Winkler, M. (2010) MOLECULAR GENETICS OF BACTERIA & PHAGES. In: 2010 meeting of MOLECULAR GENETICS OF BACTERIA & PHAGES, August 24–August 28, 2010, Cold Spring Harbor Laboratory.

J

Jacob, Y., Bergamin, E., Donoghue, M. T., Mongeon, V., LeBlanc, C., Voigt, P., Underwood, C. J., Brunzelle, J. S., Michaels, S. D., Reinberg, D., Couture, J. F., Martienssen, R. A. (2014) Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Science, 343 (6176). pp. 1249-53. ISSN 0036-8075

Jeon, Y., Bekiranov, S., Karnani, N., Kapranov, P., Ghosh, S., MacAlpine, D., Lee, C., Deog, S. H., Gingeras, T. R., Dutta, A. (2005) Temporal profile of replication of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America, 102 (18). pp. 6419-6424. ISSN 00278424 (ISSN)

K

Kamakaka, R. T., Bulger, M., Kaufman, P. D., Stillman, B., Kadonaga, J. T. (1996) Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1. Molecular and Cellular Biology, 16 (3). pp. 810-817. ISSN 0270-7306

Kamakaka, R. T., Kaufman, P. D., Stillman, B., Mitsis, P. G., Kadonaga, J. T. (1994) Simian virus 40 origin- and T-antigen-dependent DNA replication with Drosophila factors in vitro. Molecular and Cellular Biology, 14 (8). pp. 5114-22. ISSN 0270-7306

Kapranov, P., Sementchenko, V. I., Gingeras, T. R. (2003) Beyond expression profiling: next generation uses of high density oligonucleotide arrays. Briefings in Functional Genomics & Proteomics, 2 (1). pp. 47-56. ISSN 1473-9550 (Print)1473-9550

Kara, N., Hossain, M., Prasanth, S. G., Stillman, B. (2015) Orc1 Binding to Mitotic Chromosomes Precedes Spatial Patterning During G1 Phase and Assembly of the Origin Recognition Complex in Human Cells. J Biol Chem, 290 (19). pp. 12355-12369. ISSN 0021-9258

Kaufman, P. D., Botchan, M. R. (1994) Assembly of nucleosomes: do multiple assembly factors mean multiple mechanisms? Curr Opin Genet Dev, 4 (2). pp. 229-35. ISSN 0959-437X (Print)

Kaufman, P. D., Kobayashi, R., Kessler, N., Stillman, B. (1995) The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication. Cell, 81 (7). pp. 1105-14. ISSN 0092-8674 (Print)

Kessler, M., Mathews, M. B. (1991) Tat transactivation of the human immunodeficiency virus type 1 promoter is influenced by basal promoter activity and the simian virus 40 origin of DNA replication. Proc Natl Acad Sci U S A, 88 (22). pp. 10018-22. ISSN 0027-8424 (Print)0027-8424 (Linking)

Klar, A. J. S., Bonaduce, M. J., Cafferkey, R. (1991) The mechanism of fission yeast mating type interconversion: seal/replicate/cleave model of replication across the double-stranded break site at mat1. Genetics, 127 (3). pp. 489-496. ISSN 0016-6731

Knott, S. R., Viggiani, C. J., Aparicio, O. M. (2009) To promote and protect: coordinating DNA replication and transcription for genome stability. Epigenetics, 4 (6). pp. 362-5. ISSN 1559-2294

Knott, S. R., Viggiani, C. J., Tavare, S., Aparicio, O. M. (2009) Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev, 23 (9). pp. 1077-90. ISSN 0890-9369

Koh, S. B., Mascalchi, P., Rodriguez, E., Lin, Y., Jodrell, D. I., Richards, F. M., Lyons, S. K. (2017) A quantitative FastFUCCI assay defines cell cycle dynamics at a single-cell level. J Cell Sci, 130 (2). pp. 512-520. ISSN 0021-9533

L

Lee, S. J., Syed, S., Enemark, E. J., Schuck, S., Stenlund, A., Ha, T., Joshua-Tor, L. (2014) Dynamic look at DNA unwinding by a replicative helicase. Proceedings of the National Academy of Sciences of the United States of America, 111 (9). E827-35. ISSN 0027-8424

Lee, T. J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., Menges, M., Zheng, P., Main, D., Murray, J. A. H., Sosinski, B., Allen, G. C., Martienssen, R. A., Hanley-Bowdoin, L., Vaughn, M. W., Thompson, W. F. (2010) Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. Plos Genetics, 6 (6). pp. 1-18.

Levy, M. Z., Allsopp, R. C., Futcher, A. B., Greider, C. W., Harley, C. B. (1992) Telomere end-replication problem and cell aging. J Mol Biol, 225 (4). pp. 951-60. ISSN 0022-2836 (Print)0022-2836 (Linking)

Li, F., Martienssen, R. A., Cande, W. Z. (2011) Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature, 475 (7355). 244-U2562. ISSN 0028-0836

Li, Q., Fazly, A. M., Zhou, H., Huang, S., Zhang, Z., Stillman, B. (2009) The elongator complex interacts with PCNA and modulates transcriptional silencing and sensitivity to DNA damage agents. Plos Genetics, 5 (10). e1000684. ISSN 1553-7390

Li, R., Waga, S., Hannon, G. J., Beach, D., Stillman, B. (1994) Differential effects by the p21 CDK inhibitor on PCNA-dependent DNA replication and repair. Nature, 371 (6497). pp. 534-537. ISSN 00280836 (ISSN)

Li, R., Yu, D. S., Tanaka, M., Zheng, L., Berger, S. L., Stillman, B. (1998) Activation of Chromosomal DNA Replication in Saccharomyces cerevisiae by Acidic Transcriptional Activation Domains. Molecular and Cellular Biology, 18 (3). pp. 1296-1302. ISSN 0270-7306

Li, Rong, Hannon, G. J., Beach, D., Stillman, B. (1996) Subcellular distribution of p21 and PCNA in normal and repair-deficient cells following DNA damage. Current Biology, 6 (2). pp. 189-199. ISSN 09609822 (ISSN)

Liang, C., Stillman, B. (1997) Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants. Genes and Development, 11 (24). pp. 3375-86. ISSN 08909369 (ISSN)

Liang, C., Weinreich, M., Stillman, B. (1995) ORC and Cdc6p interact and determine the frequency of initiation of DNA replication in the genome. Cell, 81 (5). pp. 667-76. ISSN 0092-8674 (Print)

Liu, X., Stenlund, A. (2010) Mutations in Sensor 1 and Walker B in the bovine papillomavirus E1 initiator protein mimic the nucleotide bound state. Journal of Virology, 84 (4). pp. 1912-1919. ISSN 0022-538X

Ljungquist, E., Bukhari, A. I. (1979) Behavior of bacteriophage Mu DNA upon infecton of Escherichia coli cells. Journal of Molecular Biology, 133 (3). pp. 339-357. ISSN 0022-2836

Luckow, B., Bunz, F., Stillman, B., Lichter, P., Schutz, G. (1994) Cloning, Expression, and Chromosomal Localization of the 140-Kilodalton Subunit of Replication Factor-C from Mice and Humans. Molecular and Cellular Biology, 14 (3). pp. 1626-1634. ISSN 0270-7306

Lydeard, J. R., Lipkin-Moore, Z., Sheu, Y. J., Stillman, B., Burgers, P. M., Haber, J. E. (2010) Break-induced replication requires all essential DNA replication factors except those specific for pre-RC assembly. Genes and Development, 24 (11). pp. 1133-1144.

M

Marahrens, Y., Stillman, B. (1994) Replicator dominance in a eukaryotic chromosome. Embo Journal, 13 (14). pp. 3395-400. ISSN 0261-4189

Marahrens, Y., Stillman, B. (1996) The initiation of DNA replication in the yeast Saccharomyces cerevisiae. In: Eukaryotic DNA replication. Frontiers in molecular biology, 15 . Oxford University Press, Cambridge, UK, pp. 66-95. ISBN 978-0-19-963585-6

Marahrens, Y., Stillman, B. (1992) A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science, 255 (5046). pp. 817-23. ISSN 0036-8075 (Print)

Matsumoto, T., Beach, D. (1991) Premature initiation of mitosis in yeast lacking RCC1 or an interacting GTPase. Cell, 66 (2). pp. 347-60. ISSN 0092-8674 (Print)0092-8674 (Linking)

Maulbecker, C., Mohr, I., Gluzman, Y., Bartholomew, J., Botchan, M. (1992) A deletion in the simian virus 40 large T antigen impairs lytic replication in monkey cells in vivo but enhances DNA replication in vitro: new complementation function of T antigen. J Virol, 66 (4). pp. 2195-207. ISSN 0022-538X (Print)0022-538X (Linking)

Mazurek, A., Luo, W., Krasnitz, A., Hicks, J., Powers, R. S., Stillman, B. (2012) DDX5 regulates DNA replication and is required for cell proliferation in a subset of breast cancer cells. Cancer Discovery, 2 (9). pp. 812-825. ISSN 21598274 (ISSN)

McJunkin, K., Mazurek, A., Premsrirut, P. K., Zuber, J., Dow, L. E., Simon, J., Stillman, B., Lowe, S. W. (2011) Reversible suppression of an essential gene in adult mice using transgenic RNA interference. Proceedings of the National Academy of Sciences of the United States of America, 108 (17). pp. 7113-7118. ISSN 0027-8424

McVey, D., Brizuela, L., Mohr, I., Marshak, D. R., Gluzman, Y., Beach, D. (1989) Phosphorylation of large tumour antigen by cdc2 stimulates SV40 DNA replication. Nature, 341 (6242). pp. 503-7. ISSN 1476-4687

Melendy, T., Sedman, J., Stenlund, A. (1995) Cellular factors required for papillomavirus DNA replication. J Virol, 69 (12). pp. 7857-67. ISSN 0022-538X (Print)

Melendy, T., Stillman, B. (1991) Purification of DNA polymerase delta as an essential simian virus 40 DNA replication factor. Journal of Biological Chemistry, 266 (3). pp. 1942-9. ISSN 0021-9258

Melendy, T., Stillman, B. (1992) SV40 DNA Replication. Nucleic Acids and Molecular Biology, 6. pp. 129-158. ISSN 0933-1891

Melendy, T., Stillman, B. (1993) An interaction between replication protein A and SV40 T antigen appears essential for primosome assembly during SV40 DNA replication. J Biol Chem, 268 (5). pp. 3389-95. ISSN 0021-9258 (Print)

Mendez, J., Stillman, B. (2003) Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins. Bioessays, 25 (12). pp. 1158-1167. ISSN 0265-9247

Mendez, J., Zou-Yang, X. H., Kim, S. Y., Hidaka, M., Tansey, W. P., Stillman, B. (2002) Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. Molecular Cell, 9 (3). pp. 481-491. ISSN 1097-2765

Merkle, T., Haizel, T., Matsumoto, T., Harter, K., Dallmann, G., Nagy, F. (1994) Phenotype of the Fission Yeast-Cell Cycle Regulatory Mutant Pim1-46 Is Suppressed by a Tobacco Cdna-Encoding a Small, Ran-Like Gtp-Binding Protein. Plant Journal, 6 (4). pp. 555-565. ISSN 0960-7412

Mizushima, T., Takahashi, N., Stillman, B. (2000) Cdc6p modulates the structure and DNA binding activity of the origin recognition complex in vitro. Genes & Development, 14 (13). pp. 1631-1641. ISSN 0890-9369

Mohr, I. J., Fairman, M. P., Stillman, B., Gluzman, Y. (1989) Large T-antigen mutants define multiple steps in the initiation of simian virus 40 DNA replication. Journal of Virology, 63 (10). pp. 4181-8. ISSN 0022-538X

Mohr, I. J., Gluzman, Y., Fairman, M. P., Strauss, M., McVey, D., Stillman, B., Gerard, R. D. (1989) Production of simian virus 40 large tumor antigen in bacteria: altered DNA-binding specificity and dna-replication activity of underphosphorylated large tumor antigen. Proceedings of the National Academy of Sciences of the United States of America, 86 (17). pp. 6479-83. ISSN 0027-8424

Murzina, N., Verreault, A., Laue, E., Stillman, B. (1999) Heterochromatin Dynamics in Mouse Cells: Interaction between Chromatin Assembly Factor 1 and HP1 Proteins. Molecular Cell, 4 (4). pp. 529-540.

N

Nahreini, P., Mathews, M. B. (1995) Effects of the simian virus 40 origin of replication on transcription from the human immunodeficiency virus type 1 promoter. J Virol, 69 (2). pp. 1296-301. ISSN 0022-538X (Print)

Nakano, S., Stillman, B., Horvitz, H. R. (2011) Replication-coupled chromatin assembly generates a neuronal bilateral asymmetry in C. elegans. Cell, 147 (7). pp. 1525-1536. ISSN 00928674 (ISSN)

Neuwald, Andrew F. (2005) Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases. Nucleic Acids Res, 33 (11). pp. 3614-28. ISSN 1362-4962 (Electronic)

Neuwald, A. F. (2006) Hypothesis: bacterial clamp loader ATPase activation through DNA-dependent repositioning of the catalytic base and of a trans-acting catalytic threonine. Nucleic Acids Res, 34 (18). pp. 5280-90. ISSN 1362-4962 (Electronic)

Ni, T. H., McDonald, W. F., Zolotukhin, I., Melendy, T., Waga, S., Stillman, B., Muzyczka, N. (1998) Cellular proteins required for adeno-associated virus DNA replication in the absence of adenovirus coinfection. Journal of Virology, 72 (4). pp. 2777-87. ISSN 0022-538X

O

O'Donnell, M., Langston, L., Stillman, B. (2013) Principles and concepts of DNA replication in bacteria, archaea, and eukarya. Cold Spring Harbor Perspectives in Biology, 5 (7). ISSN 19430264

O'Keefe, R. T., Henderson, S. C., Spector, D. L. (1992) Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences. Journal of Cell Biology, 116 (5). pp. 1095-1110. ISSN 0021-9525

Ola, A., Waga, S., Ellison, V., Stillman, B., McGurk, M., Leigh, I. M., Waseem, N. H., Waseem, A. (2001) Human-Saccharomyces cerevisiae proliferating cell nuclear antigen hybrids - Oligomeric structure and functional characterization using in vitro DNA replication. Journal of Biological Chemistry, 276 (13). pp. 10168-10177. ISSN 0021-9258

Ozaki, S., Kawakami, H., Nakamura, K., Fujikawa, N., Kagawa, W., Yokoyama, S., Kurumizaka, H., Katayama, T. (2007) Analysis on a novel functional structure in DnaA for regulating the duplex unwinding of chromosomal replication origin. Genes & Genetic Systems, 82 (6). p. 545. ISSN 1341-7568

P

Paxton, W. A., Kang, S., Liu, R., Landau, N. R., Gingeras, T. R., Wu, L., Mackay, C. R., Koup, R. A. (1999) HIV-1 infectability of CD4+ lymphocytes with relation to β-chemokines and the CCR5 coreceptor. Immunology Letters, 66 (1-3). pp. 71-75. ISSN 01652478 (ISSN)

Pegoraro, G., Marcello, A., Myers, M. P., Giacca, M. (2006) Regulation of adeno-associated virus DNA replication by the cellular TAF-I/set complex. Journal of Virology, 80 (14). pp. 6855-6864. ISSN 0022538X

Persson, H., Pettersson, U., Mathews, M. B. (1978) Synthesis of a structural adenovirus polypeptide in the absence of viral DNA replication. Virology, 90 (1). pp. 67-79. ISSN 0042-6822 (Print)0042-6822 (Linking)

Pichugina, T., Sugawara, T., Kaykov, A., Schierding, W., Masuda, K., Uewaki, J., Grand, R. S., Allison, J. R., Martienssen, R. A., Nurse, P., Ueno, M., O'Sullivan, J. M. (2016) A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Sci Rep, 6. p. 18757. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Piirsoo, M., Ustav, E., Mandel, T., Stenlund, A., Ustav, M. (1996) Cis and trans requirements for stable episomal maintenance of the BPV-1 replicator. EMBO J, 15 (1). pp. 1-11. ISSN 0261-4189 (Print)0261-4189 (Linking)

Prasanth, S. G., Mendez, J., Prasanth, K. V. , Stillman, B. (2004) Dynamics of pre-replication complex proteins during the cell division cycle. Philos Trans R Soc Lond B Biol Sci, 359 (1441). pp. 7-16. ISSN 0962-8436 (Print)

Prasanth, S. G., Prasanth, K. V. , Stillman, B. (2002) ORC, a replication initiator protein required for multiple aspects of cell division cycle. Molecular Biology of the Cell, 13. 282A-282A. ISSN 1059-1524

Prasanth, S. G., Prasanth, K. V. , Stillman, B. (2002) Orc6 involved in DNA replication, chromosome segregation, and cytokinesis. Science, 297 (5583). pp. 1026-31. ISSN 1095-9203 (Electronic)

Prasanth, S. G., Shen, Z., Prasanth, K. V. , Stillman, B. (2010) Human origin recognition complex is essential for HP1 binding to chromatin and heterochromatin organization. Proceedings of the National Academy of Sciences of the United States of America, 107 (34). pp. 15093-8. ISSN 0027-8424

Prelich, G., Kostura, M., Marshak, D. R., Mathews, M. B., Stillman, B. (1987) The cell-cycle regulated proliferating cell nuclear antigen is required for SV40 DNA replication in vitro. Nature, 326 (6112). pp. 471-475. ISSN 0028-0836 (Print)

Prelich, G., Stillman, B. (1988) Coordinated leading and lagging strand synthesis during SV40 DNA replication in vitro requires PCNA. Cell, 53 (1). pp. 117-26. ISSN 0092-8674

Prelich, G., Stillman, B. W. (1986) Functional-Characterization of Thermolabile DNA-Binding Proteins That Affect Adenovirus DNA-Replication. Journal of Virology, 57 (3). pp. 883-892. ISSN 0022-538X

Q

Quelle, D. E., Ashmun, R. A., Shurtleff, S. A., Kato, J. Y., Barsagi, D., Roussel, M. F., Sherr, C. J. (1993) Overexpression of Mouse D-Type Cyclins Accelerates G(1) Phase in Rodent Fibroblasts. Genes Dev, 7 (8). pp. 1559-1571. ISSN 0890-9369

R

Rao, H., Marahrens, Y., Stillman, B. (1994) Functional conservation of multiple elements in yeast chromosomal replicators. Molecular and Cellular Biology, 14 (11). pp. 7643-51. ISSN 0270-7306

Rao, H., Stillman, B. (1995) The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proceedings of the National Academy of Sciences of the United States of America, 92 (6). pp. 2224-8. ISSN 0027-8424

Reed, S. H., Akiyama, M., Stillman, B., Friedberg, E. C. (1999) Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair. Genes and Development, 13 (23). pp. 3052-3058. ISSN 08909369 (ISSN)

Ren, J., Castel, S. E., Martienssen, R. A. (2015) Dicer in action at replication-transcription collisions. Mol Cell Oncol, 2 (3). e991224. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Revyakin, A., Liu, C., Ebright, R. H., Strick, T. R. (2006) Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching. Science, 314 (5802). pp. 1139-1143. ISSN 00368075

S

Sanders, C. M., Stenlund, A. (2001) Mechanism and requirements for bovine papillomavirus, type 1, E1 initiator complex assembly promoted by the E2 transcription factor bound to distal sites. Journal of Biological Chemistry, 276 (26). pp. 23689-23699. ISSN 0021-9258

Sanders, C. M., Stenlund, A. (1998) Recruitment and loading of the E1 initiator protein: an ATP-dependent process catalysed by a transcription factor. Embo J, 17 (23). pp. 7044-55. ISSN 0261-4189 (Print)

Sanders, C. M., Stenlund, A. (2000) Transcription factor-dependent loading of the E1 initiator reveals modular assembly of the papillomavirus origin melting complex. Journal of Biological Chemistry, 275 (5). pp. 3522-3534. ISSN 0021-9258

Schneider, B. L., Yang, Q. H., Futcher, A. B. (1996) Linkage of replication to start by the Cdk inhibitor Sic1. Science, 272 (5261). pp. 560-2. ISSN 0036-8075 (Print)

Schuck, S., Stenlund, A. (2007) ATP-dependent minor groove recognition of TA base pairs is required for template melting by the E1 initiator protein. J Virol, 81 (7). pp. 3293-3302. ISSN 0022-538X (Print)

Schuck, S., Stenlund, A. (2005) Assembly of a double hexameric helicase. Mol Cell, 20 (3). pp. 377-89. ISSN 1097-2765 (Print)

Schuck, S., Stenlund, A. (2011) Mechanistic analysis of local ori melting and helicase assembly by the papillomavirus e1 protein. Mol Cell, 43 (5). pp. 776-787. ISSN 1097-4164 (Electronic) 1097-2765 (Linking)

Schuck, S., Stenlund, A. (2005) Role of papillomavirus E1 initiator dimerization in DNA replication. J Virol, 79 (13). pp. 8661-4. ISSN 0022-538X (Print)

Schuck, S., Stenlund, A. (2006) Surface mutagenesis of the bovine papillomavirus E1 DNA binding domain reveals residues required for multiple functions related to DNA replication. J Virol, 80 (15). pp. 7491-9. ISSN 0022-538X (Print)

Sedman, J., Stenlund, A. (1995) Co-operative interaction between the initiator E1 and the transcriptional activator E2 is required for replicator specific DNA replication of bovine papillomavirus in vivo and in vitro. Embo J, 14 (24). pp. 6218-28. ISSN 0261-4189 (Print)

Sedman, J., Stenlund, A. (1996) The initiator protein E1 binds to the bovine papillomavirus origin of replication as a trimeric ring-like structure. Embo J, 15 (18). pp. 5085-92. ISSN 0261-4189 (Print)

Sedman, J., Ustav, M., Stenlund, A. (1994) DNA-Replication of Papillomaviruses. Journal of Cellular Biochemistry. p. 211. ISSN 0730-2312

Sedman, T., Sedman, J., Stenlund, A. (1997) Binding of the E1 and E2 proteins to the origin of replication of bovine papillomavirus. J Virol, 71 (4). pp. 2887-96. ISSN 0022-538X (Print)

Sheltzer, J. M., Blank, H. M., Pfau, S. J., Tange, Y., George, B. M., Humpton, T. J., Brito, I. L., Hiraoka, Y., Niwa, O., Amon, A. (2011) Aneuploidy drives genomic instability in yeast. Science, 333 (6045). pp. 1026-30. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Sheu, Y. J., Kinney, J. B., Stillman, B. (2016) Concerted activities of Mcm4, Sld3 and Dbf4 in control of origin activation and DNA replication fork progression. Genome Res, 26 (3). pp. 315-330. ISSN 1549-5469 (Electronic)1088-9051 (Linking)

Sheu, Y. J., Kinney, J. B., Lengronne, A., Pasero, P., Stillman, B. (2014) Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression. Proceedings of the National Academy of Sciences of the United States of America, 111 (18). E1899-1908. ISSN 0027-8424

Sheu, Y. J., Stillman, B. (2006) Cdc7-Dbf4 phosphorylates MCM proteins via a docking site-mediated mechanism to promote S phase progression. Mol Cell, 24 (1). pp. 101-13. ISSN 1097-2765 (Print)

Sheu, Y. J., Stillman, B. (2010) The Dbf4-Cdc7 kinase promotes S phase by alleviating an inhibitory activity in Mcm4. Nature, 463 (7277). pp. 113-117.

Shibahara, K., Stillman, B. (1999) Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin. Cell, 96 (4). pp. 575-85. ISSN 0092-8674 (Print)

Shibahara, K., Verreault, A., Stillman, B. (2000) The N-terminal domains of histones H3 and H4 are not necessary for chromatin assembly factor-1-mediated nucleosome assembly onto replicated DNA in vitro. Proceedings of the National Academy of Sciences of the United States of America, 97 (14). pp. 7766-7771. ISSN 0027-8424

Smith, S., Stillman, B. (1991) Immunological characterization of chromatin assembly factor I, a human cell factor required for chromatin assembly during DNA replication in vitro. Journal of Biological Chemistry, 266 (18). pp. 12041-12047. ISSN 0021-9258

Smith, S., Stillman, B. (1989) Purification and Characterization of a Replication-Dependent Chromatin Assembly Factor Isolated from Human Cells. Journal of Cellular Biochemistry - Supplement.(13 PART D). p. 173.

Smith, S., Stillman, B. (1989) Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell, 58 (1). pp. 15-25. ISSN 0092-8674

Smith, S., Stillman, B. (1991) Stepwise assembly of chromatin during DNA replication in vitro. Embo J, 10 (4). pp. 971-80. ISSN 0261-4189

Speck, C., Chen, Z., Li, H., Stillman, B. (2005) ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. Nat Struct Mol Biol, 12 (11). pp. 965-71. ISSN 1545-9993 (Print)

Speck, C., Stillman, B. (2007) Cdc6 ATPase activity regulates ORC center dot Cdc6 stability and the selection of specific DNA sequences as origins of DNA replication. Journal of Biological Chemistry, 282 (16). pp. 11705-11714. ISSN 0021-9258

Speck, C., Stillman, B. (2007) Initiation of DNA replication - Assembly of a molecular machine depends on origin DNA. Febs Journal, 274 (S1). p. 72. ISSN 1742-464X

Spector, D. L., Vasconcelos, A. C., Triemer, R. E. (1981) DNA duplication and chromosome structure in the dinoflagellates. Protoplasm, 105 (3-4). pp. 185-194. ISSN 0033-183X

Springer, P. S., McCombie, W. R., Sundaresan, V., Martienssen, R. A. (1995) Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science, 268 (5212). pp. 877-880. ISSN 0036-8075

Stein, R. W., Corrigan, M., Yaciuk, P., Whelan, J., Moran, E. (1990) Analysis of E1A-mediated growth regulation functions: binding of the 300-kilodalton cellular product correlates with E1A enhancer repression function and DNA synthesis-inducing activity. J Virol, 64 (9). pp. 4421-7. ISSN 0022-538X (Print)0022-538X (Linking)

Stenlund, A. (2003) E1 initiator DNA binding specificity is unmasked by selective inhibition of non-specific DNA binding. Embo Journal, 22 (4). pp. 954-963. ISSN 0261-4189

Stenlund, A. (2003) Initiation of DNA replication: Lessons from viral initiator proteins. Nature Reviews Molecular Cell Biology, 4 (10). pp. 777-785. ISSN 1471-0072

Stenlund, A., Ustav, M. (1991) Cis and Trans Requirements for Bpv DNA Replication. Journal of Cellular Biochemistry - Supplement, 15 (PART E). p. 76.

Stillman, B., Speck, C., Li, H. L. (2014) Biochemical studies on replication of the genome in eukaryotes. Faseb Journal, 28 (1). ISSN 0892-6638

Stillman, B. (1996) Cell cycle control of DNA replication. Science, 274 (5293). pp. 1659-64. ISSN 0036-8075 (Print)

Stillman, B. (1986) Chromatin assembly during SV40 DNA replication in vitro. Cell, 45 (4). pp. 555-65. ISSN 0092-8674 (Print)

Stillman, B. (1996) Comparison of DNA replication in cells from prokarya and eukarya. In: DNA replication in eukaryotic cells. Cold Spring Harbor monograph series, 31 . Cold Spring Harbor Laboratory Press, Plainview, NY, pp. 435-460. ISBN 0879694599

Stillman, B. (2001) DNA replication - Genomic views of genome duplication. Science, 294 (5550). pp. 2301-2304. ISSN 0036-8075

Stillman, B. (1993) DNA replication: Replicator renaissance. Nature, 366 (6455). pp. 506-507. ISSN 00280836 (ISSN)

Stillman, B. (2013) Deoxynucleoside triphosphate (dNTP) synthesis and destruction regulate the replication of both cell and virus genomes. Proceedings of the National Academy of Sciences of the United States of America, 110 (35). pp. 14120-14121. ISSN 0027-8424

Stillman, B. (2009) Initiation of DNA replication. In: The Cell Division Cycle: Controlling when and where cells divide and differentiate, The Biomedical & Life Sciences Collection. Henry Stewart Talks Ltd, London.

Stillman, B. (1994) Initiation of Eukaryotic DNA-Replication. Faseb Journal, 8 (7). A1323-A1323. ISSN 0892-6638

Stillman, B. (1994) Initiation of chromosomal DNA replication in eukaryotes. Lessons from lambda. Journal of Biological Chemistry, 269 (10). pp. 7047-50. ISSN 0021-9258

Stillman, B. (1993) Initiation of chromosome replication in eukaryotic cells. The Harvey Lectures, 88. pp. 115-140. ISSN 0073-0874

Stillman, B. (1988) Initiation of eukaryotic DNA replication in vitro. Bioessays, 9 (2-3). pp. 56-60. ISSN 0265-9247 (Print)

Stillman, B. (1989) Initiation of eukaryotic DNA replication in vitro. Annual Review of Cell Biology, 5. pp. 197-245. ISSN 0743-4634 (Print)0743-4634

Stillman, B. (1991) Mechanism and regulation of eukaryotic DNA replication. In: Origins of human cancer : a comprehensive review. Cold Spring Harbor Laboratory Press, Plainview, NY, pp. 77-89. ISBN 0879694041

Stillman, B. (1992) Mechanisms and control of cellular DNA replication. In: DNA replication and the cell cycle. Colloquium der Gesellschaft für Biologische Chemie, 43 . Springer-Verlag, Berlin, pp. 127-143. ISBN 978-3-642-77042-5

Stillman, B. (2005) Origin recognition and the chromosome cycle. FEBS Letters, 579 (4). pp. 877-84. ISSN 00145793 (ISSN)

Stillman, B. (2015) Reconsidering DNA Polymerases at the Replication Fork in Eukaryotes. Molecular Cell, 59 (2). pp. 139-141. ISSN 1097-2765

Stillman, B. (1993) Replicator renaissance. Nature, 366 (6455). pp. 506-7. ISSN 0028-0836 (Print)

Stillman, B. (1994) Smart machines at the DNA replication fork. Cell, 78 (5). pp. 725-8. ISSN 0092-8674 (Print)

Stillman, B. (2011) Talk from Bruce Stillman at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Stillman, B., Bell, S., Fien, K., Marahrens, Y., Melendy, T., Rao, H., Ruppert, J. M., Waga, S. (1993) Initiation of Virus and Cell-DNA Replication. Journal of Cellular Biochemistry, 53 (17D). p. 6. ISSN 0730-2312

Stillman, B., Bell, S. P., Dutta, A., Marahrens, Y. (1992) DNA replication and the cell cycle. Regulation of the eukaryotic cell cycle. Ciba Foundation symposium, 170. 147-156; discussion 156. ISSN 03005208 (ISSN)

Stillman, B., Dutta, A., Melendy, T., Tsurimoto, T. (1991) Mechanism and Regulation of DNA Replication Lessons from Sv-40. Journal of Cellular Biochemistry - Supplement, 47 (S15E). p. 46.

Stillman, B., Fairman, M. P., Din, S. U., Tsurimoto, T. (1989) DNA Replication in-Vitro from the Sv-40 Origin. Journal of Cellular Biochemistry - Supplement.(13 PART D), 41 (S13D). p. 73.

Stillman, B., Fairman, M. P., Prelich, G., Smith, S., Tsurimoto, T. (1988) Cellular Proteins Required for Multiple Stages of Sv40 DNA Replication in-Vitro. In: Cell Cycle Control in Eukaryotes. Current Communications in Molecular Biology (ED.). Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 84-89.

Stillman, B., Gerard, R. D., Guggenheimer, R. A., Gluzman, Y. (1985) T antigen and template requirements for SV40 DNA replication in vitro. EMBO Journal, 4 (11). pp. 2933-2939. ISSN 0261-4189

Stillman, B. W. (1981) Adenovirus DNA-Replication Invitro - a Protein Linked to the 5' End of Nascent DNA Strands. Journal of Virology, 37 (1). pp. 139-147. ISSN 0022-538X

Stillman, B. W. (1985) Biochemical and genetic analysis of adenovirus DNA replication in vitro. In: Genetic engineering : principles and methods. Plenum Publishing, New York, pp. 1-27. ISBN 030642004X

Stillman, B. W. (1983) The replication of adenovirus DNA with purified proteins. Cell, 35 (1). pp. 7-9. ISSN 0092-8674 (Print)

Stillman, B. W. (1983) The replication of adenovirus DNA. In: UCLA symposia on molecular and cellular biology, April 3rd-9th 1983, Keystone, CO.

Stillman, B. W., Bellett, A. J., Robinson, A. J. (1977) Replication of linear adenovirus DNA is not hairpin-primed. Nature, 269 (5630). pp. 723-5. ISSN 0028-0836 (Print)

Stillman, B. W., Bellett, A. J. D. (1979) Replication of DNA in adenovirus-infected cells. Cold Spring Harbor Symposia on Quantitative Biology, 43 (2). pp. 729-739. ISSN 00917451 (ISSN)

Stillman, B. W., Bellett, A. J. D. (1979) An adenovirus protein associated with the ends of replicating DNA molecules. Virology, 93 (1). pp. 69-79.

Stillman, B. W., Diffley, J. F. X., Prelich, G., Guggenheimer, R. A. (1986) DNA-Protein Interactions at the Replication Origins of Adenovirus and Sv-40. In: DNA Tumor Viruses: Control of gene expression and replication. Cancer Cells, 4 . Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 453-464. ISBN 0879691921

Stillman, B. W., Gluzman, Y. (1985) Replication and Supercoiling of Sv-40 DNA in Cell Extracts from Human Cells. Molecular & Cellular Biology, 5 (8). pp. 2051-2060.

Stillman, B. W., Tamanoi, F. (1983) Adenoviral DNA replication: DNA sequences and enzymes required for initiation in vitro. Cold Spring Harbor Symposia on Quantitative Biology, 47 (2). pp. 741-750. ISSN 00917451 (ISSN)

Stillman, B. W., Tamanoi, F. (1983) The Interaction of Proteins and DNA Sequences Required for Adenovirus DNA Replication in-Vitro. Journal of Cellular Biochemistry, 21 (S7A). p. 130.

Stillman, B. W., Tamanoi, F., Mathews, M. B. (1982) Purification of an adenovirus-coded DNA polymerase that is required for initiation of DNA replication. Cell, 31 (3 Pt 2). pp. 613-23. ISSN 0092-8674 (Print)

Stillman, B. W., Topp, W. C., Engler, J. A. (1982) Conserved sequences at the origin of adenovirus DNA replication. Journal of Virology, 44 (2). pp. 530-7. ISSN 0022-538X

Stillman, B. W., White, E., Grodzicker, T. (1984) Independent Mutations in Adenovirus Type 2 Ts-111 Cause Degradation of Cellular DNA and Defective Viral DNA Replication. Journal of Virology, 50 (2). pp. 598-605.

Sun, J., Yuan, Z., Stillman, B., Speck, C., Li, H. (2016) Structure and function studies of replication initiation factors. In: The Initiation of DNA Replication in Eukaryotes. Springer, pp. 427-441. ISBN 978-331924696-3978-331924694-9

Sun, J., Fernandez-Cid, A., Riera, A., Tognetti, S., Yuan, Z., Stillman, B., Speck, C., Li, H. (2014) Structural and mechanistic insights into Mcm2-7 double-hexamer assembly and function. Genes & Development, 28 (20). pp. 2291-303. ISSN 0890-9369

Szyjka, S. J., Aparicio, J. G., Viggiani, C. J., Knott, S., Xu, W., Tavare, S., Aparicio, O. M. (2008) Rad53 regulates replication fork restart after DNA damage in Saccharomyces cerevisiae. Genes Dev, 22 (14). pp. 1906-20. ISSN 0890-9369 (Print)0890-9369

Szymanski, P., Stenlund, A. (1991) Regulation of early gene expression from the bovine papillomavirus genome in transiently transfected C127 cells. J Virol, 65 (11). pp. 5710-20. ISSN 0022-538x

T

Tamanoi, F., Stillman, B. W. (1982) Function of Adenovirus Terminal Protein in the Initiation of DNA Replication. Proceedings of the National Academy of Sciences of the United States of America, 79 (7). pp. 2221-2225. ISSN 0027-8424

Tamanoi, F., Stillman, B. W. (1983) Initiation of adenovirus DNA replication in vitro requires a specific DNA sequence. Proceedings of the National Academy of Sciences of the United States of America, 80 (21). pp. 6446-50. ISSN 0027-8424

Tamanoi, F., Stillman, B. W. (1983) The Origin of Adenovirus DNA-Replication. In: The Molecular biology of adenoviruses : 30 years of adenovirus research, 1953-1983. Current Topics in Microbiology and Immunology, 109 . Springer-Verlag, Berlin; New York, pp. 75-87. ISBN 0387130349

Tjian, R. (1979) Protein-DNA Interactions at the Origin of Simian Virus 40 DNA Replication. Cold Spring Harb Symp Quant Biol, 43. pp. 655-662. ISSN 0091-7451

Tjian, R. (1979) Protein-DNA interactions at the origin of simian virus 40 DNA replication. Cold Spring Harbor Symposia on Quantitative Biology, 43 (2). pp. 655-61.

Tjian, R., Robbins, A. (1979) Enzymatic activities associated with a purified simian virus 40 T antigen-related protein. Proc Natl Acad Sci U S A, 76 (2). pp. 610-4. ISSN 0027-8424 (Print)0027-8424 (Linking)

Tsurimoto, T., Fairman, M. P., Stillman, B. (1989) Simian virus 40 DNA replication in vitro: identification of multiple stages of initiation. Molecular & Cellular Biology, 9 (9). pp. 3839-49. ISSN 0270-7306

Tsurimoto, T., Melendy, T., Stillman, B. (1990) Sequential initiation of lagging and leading strand synthesis by two different polymerase complexes at the SV40 DNA replication origin. Nature, 346 (6284). pp. 534-9. ISSN 0028-0836

Tsurimoto, T., Stillman, B. (1990) Functions of replication factor C and proliferating-cell nuclear antigen: functional similarity of DNA polymerase accessory proteins from human cells and bacteriophage T4. Proceedings of the National Academy of Sciences of the United States of America, 87 (3). pp. 1023-7. ISSN 0027-8424

Tsurimoto, T., Stillman, B. (1989) Purification of a cellular replication factor, RF-C, that is required for coordinated synthesis of leading and lagging strands during simian virus 40 DNA replication in vitro. Molecular & Cellular Biology, 9 (2). pp. 609-19. ISSN 0270-7306

Tsurimoto, T., Stillman, B. (1991) Replication factors required for SV40 DNA replication in vitro. I. DNA structure-specific recognition of a primer-template junction by eukaryotic DNA polymerases and their accessory proteins. J Biol Chem, 266 (3). pp. 1950-60. ISSN 0021-9258

Tsurimoto, T., Stillman, B. (1991) Replication factors required for SV40 DNA replication in vitro. II. Switching of DNA polymerase alpha and delta during initiation of leading and lagging strand synthesis. Journal of Biological Chemistry, 266 (3). pp. 1961-8. ISSN 0021-9258

Tugal, T., Zou-Yang, X. H., Gavin, K., Pappin, D., Canas, B., Kobayashi, R., Hunt, T., Stillman, B. (1998) The Orc4p and Orc5p Subunits of the Xenopus and Human Origin Recognition Complex Are Related to Orc1p and Cdc6p. Journal of Biological Chemistry, 273 (49). pp. 32421-32429. ISSN 0021-9258

U

Ustav, E., Ustav, M., Szymanski, P., Stenlund, A. (1993) The bovine papillomavirus origin of replication requires a binding site for the E2 transcriptional activator. Proc Natl Acad Sci U S A, 90 (3). pp. 898-902. ISSN 0027-8424 (Print)

Ustav, M., Stenlund, A. (1991) Transient Replication of Bpv-1 Requires 2 Viral Polypeptides Encoded by the E1 and E2 Open Reading Frames. Embo Journal, 10 (2). pp. 449-457. ISSN 0261-4189

Ustav, M., Ustav, E., Szymanski, P., Stenlund, A. (1991) Identification of the origin of replication of bovine papillomavirus and characterization of the viral origin recognition factor E1. Embo J, 10 (13). pp. 4321-9.

V

Van Dyck, E., Foury, F., Stillman, B., Brill, S. J. (1992) A Single-Stranded-DNA Binding-Protein Required for Mitochondrial-DNA Replication in Saccharomyces-Cerevisiae Is Homologous to Escherichia-Coli Ssb. Embo Journal, 11 (9). pp. 3421-3430. ISSN 0261-4189

Van Scoy, S., Watakabe, I., Krainer, A. R., Hearing, J. (2000) Human p32: A coactivator for Epstein-Barr virus nuclear antigen-1-mediated transcriptional activation and possible role in viral latent cycle DNA replication. Virology, 275 (1). pp. 145-157. ISSN 0042-6822

W

Waga, S. (1995) [Eukaryotic DNA replication: analysis of reconstitution of SV40 DNA replication]. Seikagaku, 67 (9). pp. 1142-8. ISSN 0037-1017 (Print)

Waga, S., Bauer, G., Stillman, B. (1994) Reconstitution of complete SV40 DNA replication with purified replication factors. Journal of Biological Chemistry, 269 (14). pp. 10923-34. ISSN 0021-9258

Waga, S., Hannon, G. J., Beach, D., Stillman, B. (1994) The p21 inhibitor of cyclin-dependent kinases controls DNA replication by interaction with PCNA. Nature, 369 (6481). pp. 574-578. ISSN 00280836 (ISSN)

Waga, S., Li, R., Stillman, B. (1997) p53-induced p21 controls DNA replication. Leukemia, 11 Sup. pp. 321-3. ISSN 0887-6924 (Print)

Waga, S., Stillman, B. (1994) Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro. Nature, 369 (6477). pp. 207-12. ISSN 0028-0836 (Print)

Waga, S., Stillman, B. (1998) Cyclin-dependent kinase inhibitor p21 modulates the DNA primer-template recognition complex. Molecular and Cellular Biology, 18 (7). pp. 4177-87. ISSN 0270-7306

Waga, S., Stillman, B. (1998) The DNA replication fork in eukaryotic cells. Annual Review of Biochemistry, 67. pp. 721-51. ISSN 0066-4154

Wang, H. G., Draetta, G., Moran, E. (1991) E1A induces phosphorylation of the retinoblastoma protein independently of direct physical association between the E1A and retinoblastoma products. Mol Cell Biol, 11 (8). pp. 4253-65. ISSN 0270-7306 (Print)0270-7306 (Linking)

Weinreich, M., Liang, C., Chen, H. H., Stillman, B. (2001) Binding of cyclin-dependent kinases to ORC and Cdc6p regulates the chromosome replication cycle. Proceedings of the National Academy of Sciences of the United States of America, 98 (20). pp. 11211-11217. ISSN 0027-8424

Weinreich, M., Liang, C., Stillman, B. (1999) The Cdc6p nucleotide-binding motif is required for loading mcm proteins onto chromatin. Proceedings of the National Academy of Sciences of the United States of America, 96 (2). pp. 441-6. ISSN 0027-8424

Wigler, M. H., Levy, D., Perucho, M. (1981) The somatic replication of DNA methylation. Cell, 24 (1). pp. 33-40.

Williams, R. S., Shohet, R. V., Stillman, B. (1997) A human protein related to yeast Cdc6p. Proceedings of the National Academy of Sciences of the United States of America, 94 (1). pp. 142-7. ISSN 0027-8424

X

Xiong, Y., Zhang, H., Beach, D. (1992) D type cyclins associate with multiple protein kinases and the DNA replication and repair factor PCNA. Cell, 71 (3). pp. 505-14. ISSN 0092-8674 (Print)0092-8674 (Linking)

Y

Yan, Z., DeGregori, J., Shohet, R., Leone, G., Stillman, B., Nevins, J. R., Williams, R. S. (1998) Cdc6 is regulated by E2F and is essential for DNA replication in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America, 95 (7). pp. 3603-3608. ISSN 0027-8424

Yuan, Z., Riera, A., Bai, L., Sun, J., Nandi, S., Spanos, C., Chen, Z. A., Barbon, M., Rappsilber, J., Stillman, B., Speck, C., Li, H. (2017) Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1. Nat Struct Mol Biol, 24 (3). pp. 316-324. ISSN 1545-9985

Z

Zaratiegui, B. M., Vaughn, M. W., Irvine, D. V., Goto, D. , Watt, S., Bahler, J., Arcangioli, B., Martienssen, R. A. (2011) CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature, 469 (7328). pp. 112-5. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Zhang, Z. G., Shibahara, K., Stillman, B. (2000) PCNA connects DNA replication to epigenetic inheritance in yeast. Nature, 408 (6809). pp. 221-225. ISSN 0028-0836

Zhong, Y., Nellimoottil, T., Peace, J. M., Knott, S. R., Villwock, S. K., Yee, J. M., Jancuska, J. M., Rege, S., Tecklenburg, M., Sclafani, R. A., Tavare, S., Aparicio, O. M. (2013) The level of origin firing inversely affects the rate of replication fork progression. J Cell Biol, 201 (3). pp. 373-83. ISSN 0021-9525

Zhu, H., Cong, J. P., Mamtora, G., Gingeras, T. R., Shenk, T. (1998) Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America, 95 (24). pp. 14470-14475. ISSN 00278424 (ISSN)

Zou, L., Stillman, B. (2000) Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase. Molecular and Cellular Biology, 20 (9). pp. 3086-3096. ISSN 0270-7306

Zou, L., Stillman, B. (1998) Formation of a preinitiation complex by S-phase cyclin CDK-dependent loading of Cdc45p onto chromatin. Science, 280 (5363). pp. 593-6. ISSN 0036-8075 (Print)

This list was generated on Mon Jul 24 04:38:02 2017 EDT.
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