Items where Year is 2004

ENCODE Project Consortium (October 2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306 (5696). pp. 636-40. ISSN 0036-8075

Almagro, S., Riveline, D., Hirano, T., Houchmandzadeh, B., Dimitrov, S. (February 2004) The mitotic chromosome is an assembly of rigid elastic axes organized by structural maintenance of chromosomes (SMC) proteins and surrounded by a soft chromatin envelope. Journal of Biological Chemistry, 279 (7). pp. 5118-5126. ISSN 0021-9258

Andersen, J. N., Jansen, P. G., Echwald, S. M., Mortensen, O. H., Fukada, T., Del Vecchio, R., Tonks, N. K., Moller, N. P. (January 2004) A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage. FASEB J, 18 (1). pp. 8-30. ISSN 1530-6860 (Electronic)

Andersen, J. N., Tonks, N. K. (2004) Protein tyrosine phosphatase-based therapeutics- lessons from PTP1B. In: Protein phosphatases. Topics in current genetics, 5 . Springer-Verlag, Berlin, pp. 201-230. ISBN 3540205608

Ango, F., di Cristo, G., Higashiyama, H., Bennett, V., Wu, P., Huang, Z. J. (October 2004) Ankyrin-based subcellular gradient of neurofascin, an immunoglobulin family protein, directs GABAergic innervation at purkinje axon initial segment. Cell, 119 (2). pp. 257-72. ISSN 0092-8674 (Print)

Antonescu, C. R., Viale, A., Sarran, L., Tschernyavsky, S. J., Gonen, M., Segal, N. H., Maki, R. G., Socci, N. D., DeMatteo, R. P., Besmer, P. (May 2004) Gene expression in gastrointestinal stromal tumors is distinguished by KIT genotype and anatomic site. Clin Cancer Res, 10 (10). pp. 3282-90. ISSN 1078-0432 (Print)1078-0432 (Linking)

Atwal, G. S. (December 2004) Dynamic plasticity in coupled avian midbrain maps. Phys Rev E Stat Nonlin Soft Matter Phys, 70 (6 Pt 1). 061904. ISSN 1539-3755 (Print)1539-3755 (Linking)

Atwal, G. S., Ashcroft, N. W. (2004) Polarization waves and superconducting instabilities in electron systems. Physical Review B, 70 (10). p. 104513.

Atwal, G. S., Bialek, W (December 2004) Ambiguous model learning made unambiguous with 1/f priors. NIPS.

Auster, A. S., Joshua-Tor, L. (January 2004) The DNA-binding domain of human papillomavirus type 18 E1. Crystal structure, dimerization, and DNA binding. J Biol Chem, 279 (5). pp. 3733-42. ISSN 0021-9258 (Print) (Public Dataset)

Austin, C. P., Battey, J. F., Bradley, A., Bucan, M., Capecchi, M., Collins, F. S., Dove, W. F., Duyk, G., Dymecki, S., Eppig, J. T., Grieder, F. B., Heintz, N., Hicks, G., Insel, T. R., Joyner, A., Koller, B. H., Lloyd, K. C. K., Magnuson, T., Moore, M. W., Nagy, A., Pollock, J. D., Roses, A. D., Sands, A. T., Seed, B., Skarnes, W. C., Snoddy, J., Soriano, P., Stewart, D. J., Stewart, F., Stillman, B., Varmus, H., Varticovski, L., Verma, I. M., Vogt, T. F., von Melchner, H., Witkowski, J., Woychik, R. P., Wurst, W., Yancopoulos, G. D., Young, S. G., Zambrowicz, B. (September 2004) The knockout mouse project. Nature Genetics, 36 (9). pp. 921-924. ISSN 1061-4036

Bakin, A. V., Safina, A., Rinehart, C., Daroqui, C., Darbary, H., Helfman, D. M. (October 2004) A critical role of tropomyosins in TGF-beta regulation of the actin cytoskeleton and cell motility in epithelial cells. Molecular Biology of the Cell, 15 (10). pp. 4682-4694. ISSN 1059-1524

Bastow, R., Mylne, J. S., Lister, C., Lippman, Z., Martienssen, R. A., Dean, C. (January 2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature, 427 (6970). pp. 164-7. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Baumeister, W., Bachmair, A., Chau, V., Cohen, R., Coffino, P., Demartino, G., Deshaies, R., Dohmen, J., Emr, S., Finley, D., Hampton, R., Hill, C., Hochstrasser, M., Huber, R., Jackson, P., Jentsch, S., Johnson, E., Kwon, Y. T., Pagano, M., Pickart, C., Rechsteiner, M., Scheffner, M., Sommer, T., Tansey, W., Tyers, M., Vierstra, R., Weissman, A., Wilkinson, K. D., Wolf, D. (November 2004) Varshavsky's contributions. Science, 306 (5700). pp. 1290-2. ISSN 1095-9203 (Electronic)

Benitah, S. A., Valeron, P. F., Van Aelst, L., Marshall, C. J., Lacal, J. C. (December 2004) Rho GTPases in human cancer: an unresolved link to upstream and downstream transcriptional regulation. Biochimica Et Biophysica Acta-Reviews on Cancer, 1705 (2). pp. 121-132. ISSN 0304-419X

Bina, M., Wyss, P., Ren, W. H., Szpankowski, W., Thomas, E., Randhawa, R., Reddy, S., John, P. M., Pares-Matos, E. I., Stein, A., Xu, H., Lazarus, S. A. (December 2004) Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics, 84 (6). pp. 929-940. ISSN 0888-7543

Brecht, M., Fee, M. S., Garaschuk, O., Helmchen, F., Margrie, T. W., Svoboda, K., Osten, P. (October 2004) Novel approaches to monitor and manipulate single neurons in vivo. Journal of Neuroscience, 24 (42). pp. 9223-9227. ISSN 0270-6474

Brodie, C. R., Khaliq, M., Yin, J. C. P., Clark, H. B., Orr, H. T., Boland, L. M. (April 2004) Overexpression of CREB reduces CRE-mediated transcription: behavioral and cellular analyses in transgenic mice. Molecular and Cellular Neuroscience, 25 (4). pp. 602-611. ISSN 1044-7431

Brown, E. N., Kass, R. E., Mitra, P. P. (May 2004) Multiple neural spike train data analysis: state-of-the-art and future challenges. Nature Neuroscience, 7 (5). pp. 456-461. ISSN 1097-6256

Bubulya, P. A., Prasanth, K. V. , Deerinck, T. J., Gerlich, D., Beaudouin, J., Ellisman, M. H. , Ellenberg, J., Spector, D. L. (October 2004) Hypophosphorylated SR splicing factors transiently localize around active nucleolar organizing regions in telophase daughter nuclei. J Cell Biol, 167 (1). pp. 51-63. ISSN 0021-9525 (Print)

Bubulya, P. A., Spector, D. L. (May 2004) "On the move"ments of nuclear components in living cells. Exp Cell Res, 296 (1). pp. 4-11. ISSN 0014-4827 (Print)

Bukczynska, P., Klingler-Hoffmann, M., Mitchelhill, K. I., Lam, M. H. C., Ciccomancini, M., Tonks, N. K., Sarcevic, B., Kemp, B. E., Tiganis, T. (June 2004) The T-cell protein tyrosine phosphatase is phosphorylated on Ser-304 by cyclin-dependent protein kinases in mitosis. Biochemical Journal, 380. pp. 939-949. ISSN 0264-6021

Bureau, I., Shepherd, G. M., Svoboda, K. (June 2004) Precise development of functional and anatomical columns in the neocortex. Neuron, 42 (5). pp. 789-801. ISSN 0896-6273 (Print)

Byrne, M., Kidney, C., Martienssen, R. (July 2004) Homeobox genes in Arabidopsis and their epigenetic regulation. Developmental Biology, 271 (2). p. 553. ISSN 0012-1606

Carmell, M. A., Hannon, G. J. (2004) Achieving stable, heritable gene silencing in the mouse. In: RNA interference (RNAI) : the nuts & bolts of sirna technology. The Nuts & Bolts series . DNA Press, Eagleville, PA , pp. 217-234. ISBN 0966402782

Carmell, M. A., Hannon, G. J. (March 2004) RNase III enzymes and the initiation of gene silencing. Nat Struct Mol Biol, 11 (3). pp. 214-8. ISSN 1545-9993 (Print)

Caudy, A. A., Hannon, G. J. (2004) Induction and biochemical purification of RNA-induced silencing complex from Drosophila S2 cells. Methods Mol Biol, 265. pp. 59-72. ISSN 1064-3745 (Print)

Cawley, S., Bekiranov, S., Ng, H. H., Kapranov, P., Sekinger, E. A., Kampa, D., Piccolboni, A., Sementchenko, V., Cheng, J., Williams, A. J., Wheeler, R., Wong, B., Drenkow, J., Yamanaka, M., Patel, S., Brubaker, S., Tammana, H., Helt, G., Struhl, K., Gingeras, T. R. (2004) Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs. Cell, 116 (4). pp. 499-509. ISSN 0092-8674

Charvin, G., Allemand, J. F., Strick, T. R., Bensimon, D., Croquette, V. (September 2004) Twisting DNA: single molecule studies. Contemporary Physics, 45 (5). pp. 383-403. ISSN 0010-7514

Chattopadhyaya, B., Di Cristo, G., Higashiyama, H., Knott, G. W., Kuhlman, S. J., Welker, E., Huang, Z. J. (October 2004) Experience and activity-dependent maturation of perisomatic GABAergic innervation in primary visual cortex during a postnatal critical period. Journal of Neuroscience, 24 (43). pp. 9598-611. ISSN 0270-6474

Chen, G., Hata, N., Zhang, M. Q. (2004) Transcription factor binding element detection using functional clustering of mutant expression data. Nucleic Acids Res, 32 (8). pp. 2362-71. ISSN 1362-4962 (Electronic)

Chen, H. H., Luche, R., Wei, B., Tonks, N. K. (October 2004) Characterization of two distinct dual specificity phosphatases encoded in alternative open reading frames of a single gene located on human chromosome 10q22.2. J Biol Chem, 279 (40). pp. 41404-13. ISSN 0021-9258 (Print)

Chen, N. (May 2004) Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics, Chapte. Unit 4.10.

Chen, N., Lawson, D., Bradnam, K., Harris, T. W., Stein, L. D. (October 2004) WormBase as an integrated platform for the C. elegans ORFeome. Genome Res, 14 (10B). pp. 2155-61. ISSN 1088-9051 (Print)

Chen, N., Li, B., Murphy, T. H., Raymond, L. A. (January 2004) Site within N-Methyl-D-aspartate receptor pore modulates channel gating. Molecular Pharmacology, 65 (1). pp. 157-64. ISSN 0026-895X (Print)0026-895x

Chiang, A. S., Blum, A., Barditch, J., Chen, Y. H., Chiu, S. L., Regulski, M., Armstrong, J. D., Tully, T., Dubnau, J. T. (February 2004) radish encodes a phospholipase-A2 and defines a neural circuit involved in anesthesia-resistant memory. Current Biology, 14 (4). pp. 263-272. ISSN 0960-9822

Chiodi, I., Corioni, M., Giordano, M., Valgardsdottir, R., Ghigna, C., Cobianchi, F., Xu, R. M., Riva, S., Biamonti, G. (August 2004) RNA recognition motif 2 directs the recruitment of SF2/ASF to nuclear stress bodies. Nucleic Acids Research, 32 (14). pp. 4127-4136. ISSN 0305-1048

Chklovskii, D. B. (October 2004) Exact solution for the optimal neuronal layout problem. Neural Comput, 16 (10). pp. 2067-78. ISSN 0899-7667 (Print)

Chklovskii, D. B. (September 2004) Synaptic connectivity and neuronal morphology: two sides of the same coin. Neuron, 43 (5). pp. 609-17. ISSN 0896-6273 (Print)

Chklovskii, D. B., Koulakov, A. A. (2004) Maps in the brain: what can we learn from them? Annu Rev Neurosci, 27. pp. 369-92. ISSN 0147-006X (Print)

Chklovskii, D. B., Mel, B. W., Svoboda, K. (October 2004) Cortical rewiring and information storage. Nature, 431 (7010). pp. 782-788. ISSN 0028-0836

Chourbaji, S., Hellweg, R., Brandis, D., Zorner, B., Zacher, C., Lang, U. E., Henn, F. A., Hortnagl, H., Gass, P. (February 2004) Mice with reduced brain-derived neurotrophic factor expression show decreased choline acetyltransferase activity, but regular brain monoamine levels and unaltered emotional behavior. Brain Res Mol Brain Res, 121 (1-2). pp. 28-36. ISSN 0169-328X (Print)0169-328X (Linking)

Cilia, M. L., Jackson, D. P. (2004) Plasmodesmata form and function. Current Opinion in Cell Biology, 16 (5). pp. 500-506. ISSN 09550674 (ISSN)

Cleary, M. A., Kilian, K., Wang, Y., Bradshaw, J., Cavet, G., Ge, W., Kulkarni, A., Paddison, P. J., Chang, K., Sheth, N., Leproust, E., Coffey, E. M., Burchard, J., McCombie, W. R., Linsley, P., Hannon, G. J. (December 2004) Production of complex nucleic acid libraries using highly parallel in situ oligonucleotide synthesis. Nat Methods, 1 (3). pp. 241-8.

Cormier, J. N., Huang, X., Xing, Y., Thall, P. F., Wang, X., Benjamin, R. S., Pollock, R. E., Antonescu, C. R., Maki, R. G., Brennan, M. F., Pisters, P. W. (November 2004) Cohort analysis of patients with localized, high-risk, extremity soft tissue sarcoma treated at two cancer centers: chemotherapy-associated outcomes. J Clin Oncol, 22 (22). pp. 4567-74. ISSN 0732-183X (Print)0732-183X (Linking)

Daruwala, R. S., Rudra, A., Ostrer, H., Lucito, R., Wigler, M. H., Mishra, B. (November 2004) A versatile statistical analysis algorithm to detect genome copy number variation. Proceedings of the National Academy of Sciences of the United States of America, 101 (46). pp. 16292-16297. ISSN 0027-8424

Das, D., Banerjee, N., Zhang, M. Q. (November 2004) Interacting models of cooperative gene regulation. Proc Natl Acad Sci U S A, 101 (46). pp. 16234-9. ISSN 0027-8424 (Print)

Davidoff, M. S., Middendorff, R., Enikolopov, G. N., Riethmacher, D., Holstein, A. F. , Müller, D. (December 2004) Progenitor cells of the testosterone-producing Leydig cells revealed. J Cell Biol, 167 (5). pp. 935-944.

Denli, A. M., Tops, B. B., Plasterk, R. H., Ketting, R. F., Hannon, G. J. (November 2004) Processing of primary microRNAs by the Microprocessor complex. Nature, 432 (7014). pp. 231-5. ISSN 1476-4687 (Electronic)

Deregnaucourt, S., Mitra, P. P., Feher, O., Maul, K. K., Lints, T. J., Tchernichovski, O. (2004) Song development: In search of the error-signal. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 364-376. ISBN 0077-8923

Deweese, M. R., Zador, A. M. (September 2004) Shared and private variability in the auditory cortex. J Neurophysiol, 92 (3). pp. 1840-55. ISSN 0022-3077 (Print)

Dhawan, J., Helfman, D. M. (August 2004) Modulation of acto-myosin contractility in skeletal muscle myoblasts uncouples growth arrest from differentiation. Journal of Cell Science, 117 (17). pp. 3735-3748. ISSN 0021-9533

Di Cristo, G., Wu, C., Chattopadhyaya, B., Ango, F., Knott, G., Welker, E., Svoboda, K., Huang, Z. J. (November 2004) Subcellular domain-restricted GABAergic innervation in primary visual cortex in the absence of sensory and thalamic inputs. Nature Neuroscience, 7 (11). pp. 1184-6. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Dike, S., Balija, V. S., Nascimento, L. U., Xuan, Z. Y., Ou, J., Zutavern, T., Palmer, L. E., Hannon, G. J., Zhang, M. Q., McCombie, W. R. (December 2004) The mouse genome: experimental examination of gene predictions and transcriptional start sites. Genome Res, 14 (12). pp. 2424-9. ISSN 1088-9051 (Print)

Dittgen, T., Nimmerjahn, A., Komai, S., Licznerski, P., Waters, J., Margrie, T. W., Helmchen, F., Denk, W., Brecht, M., Osten, P. (December 2004) Lentivirus-based genetic manipulations of cortical neurons and their optical and electrophysiological monitoring in vivo. Proceedings of the National Academy of Sciences of the United States of America, 101 (52). pp. 18206-11. ISSN 0027-8424

Dorstyn, L., Mills, K., Lazebnik, Y., Kumar, S. (November 2004) The two cytochrome c species, DC3 and DC4, are not required for caspase activation and apoptosis in Drosophila cells. Journal of Cell Biology, 167 (3). pp. 405-410. ISSN 0021-9525

Du, J., Hannon, G. J. (June 2004) Suppression of p160ROCK bypasses cell cycle arrest after Aurora-A/STK15 depletion. Proc Natl Acad Sci U S A, 101 (24). pp. 8975-80. ISSN 0027-8424 (Print)

Ehrlich, I., Malinow, R. (January 2004) Postsynaptic density 95 controls AMPA receptor incorporation during long-term potentiation and experience-driven synaptic plasticity. J Neurosci, 24 (4). pp. 916-27. ISSN 1529-2401 (Electronic)

Eilber, F. C., Eilber, F. R., Eckardt, J., Rosen, G., Riedel, E., Maki, R. G., Brennan, M. F., Singer, S. (October 2004) The impact of chemotherapy on the survival of patients with high-grade primary extremity liposarcoma. Ann Surg, 240 (4). 686-95; discussion 695. ISSN 0003-4932 (Print)0003-4932 (Linking)

Ekholm-Reed, S., Mendez, J., Tedesco, D., Zetterberg, A., Stillman, B., Reed, S. I. (June 2004) Deregulation of cyclin E in human cells interferes with prereplication complex assembly. Journal of Cell Biology, 165 (6). pp. 789-800. ISSN 0021-9525

Enikolopov, G., Stasiv, Y., Packer, M., Mignone, J., Encinas, J. M. (August 2004) NO is an essential negative regulator of adult neurogenesis. Nitric Oxide-Biology and Chemistry, 11 (1). p. 62. ISSN 1089-8603

Ezhkova, E., Tansey, W. P. (February 2004) Proteasomal ATPases link ubiquitylation of histone H2B to methylation of histone H3. Mol Cell, 13 (3). pp. 435-42. ISSN 1097-2765 (Print)

Fang, Y., Hearn, S., Spector, D. L. (June 2004) Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis. Mol Biol Cell, 15 (6). pp. 2664-73. ISSN 1059-1524 (Print)

Gajer, P., Schatz, M., Salzberg, S. L. (2004) Automated correction of genome sequence errors. Nucleic Acids Research, 32 (2). pp. 562-569. ISSN 03051048 (ISSN)

Gao, M. Q., Li, G. Y., Yang, B., McCombie, W. R., Quiros, C. F. (August 2004) Comparative analysis of a Brassica BAC clone containing several major aliphatic glucosinolate genes with its corresponding Arabidopsis sequence. Genome, 47 (4). pp. 666-679. ISSN 0831-2796

Garcia-Carbonero, R., Supko, J. G., Manola, J., Seiden, M. V., Harmon, D., Ryan, D. P., Quigley, M. T., Merriam, P., Canniff, J., Goss, G., Matulonis, U., Maki, R. G., Lopez, T., Puchalski, T. A., Sancho, M. A., Gomez, J., Guzman, C., Jimeno, J., Demetri, G. D. (April 2004) Phase II and pharmacokinetic study of ecteinascidin 743 in patients with progressive sarcomas of soft tissues refractory to chemotherapy. J Clin Oncol, 22 (8). pp. 1480-90. ISSN 0732-183X (Print)0732-183X (Linking)

Ge, X. C., Hannan, F., Xie, Z. L., Feng, C. H., Tully, T., Zhou, H. M., Xie, Z. P., Zhong, Y. (July 2004) Notch signaling in Drosophila long-term memory formation. Proceedings of the National Academy of Sciences of the United States of America, 101 (27). pp. 10172-10176. ISSN 0027-8424

Gill, B. S., Appels, R., Botha-Oberholster, A. M., Buell, C. R., Bennetzen, J. L., Chalhoub, B., Chumley, F., Dvořák, J., Iwanaga, M., Keller, B., Li, W., McCombie, W. R., Ogihara, Y., Quetier, F., Sasaki, T. (2004) A workshop report on wheat genome sequencing: International genome research on wheat consortium. Genetics, 168 (2). pp. 1087-1096. ISSN 00166731 (ISSN)

Gillespie, P. J., Hirano, T. (September 2004) Scc2 couples replication licensing to sister chromatid cohesion in Xenopus egg extracts. Curr Biol, 14 (17). pp. 1598-603. ISSN 0960-9822 (Print)

Gingeras, T. R. (2004) RNA reference materials for gene expression studies. Difficult first steps. Clinical Chemistry, 50 (8). pp. 1289-1290. ISSN 00099147 (ISSN)

Giulini, A., Wang, J., Jackson, D. P. (August 2004) Control of phyllotaxy by the cytokinin-inducible response regulator homologue ABPHYL1. Nature, 430 (7003). pp. 1031-4. ISSN 1476-4687 (Electronic)

Gleiberman, A. S., Rosenfeld, M. G., Enikolopov, G. (July 2004) Neuro-specific regulatory element of nestin is active in different categories of adult stem cells. Developmental Biology, 271 (2). p. 628. ISSN 0012-1606

Govek, E. E., Newey, S., Van Aelst, L. (May 2004) Knockdown of the X-linked mental retardation protein, oligophrenin-1, affects dendritic spine morphology. Faseb Journal, 18 (8). C310-C310. ISSN 0892-6638

Govek, E. E., Newey, S. E., Akerman, C. J., Cross, J. R., Van der Veken, L., Van Aelst, L. (April 2004) The X-linked mental retardation protein oligophrenin-1 is required for dendritic spine morphogenesis. Nat Neurosci, 7 (4). pp. 364-72. ISSN 1097-6256 (Print)

Grobmyer, S. R., Maki, R. G., Demetri, G. D., Mazumdar, M., Riedel, E., Brennan, M. F., Singer, S. (November 2004) Neo-adjuvant chemotherapy for primary high-grade extremity soft tissue sarcoma. Ann Oncol, 15 (11). pp. 1667-72. ISSN 0923-7534 (Print)0923-7534 (Linking)

Groover, A., Fontana, J. R., Dupper, G., Ma, C. P., Martienssen, R. A., Strauss, S., Meilan, R. (April 2004) Gene and enhancer trap tagging of vascular-expressed genes in poplar trees. Plant Physiology, 134 (4). pp. 1742-1751. ISSN 0032-0889

Gupta, S., Schoer, R. A., Egan, J. E., Hannon, G. J., Mittal, V. (February 2004) Inducible, reversible, and stable RNA interference in mammalian cells. Proc Natl Acad Sci U S A, 101 (7). pp. 1927-32. ISSN 0027-8424 (Print)

Hannon, G. J., Conklin, D. S. (2004) RNA interference by short hairpin RNAs expressed in vertebrate cells. Methods Mol Biol, 257. pp. 255-66. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Hannon, G. J., Rossi, J. J. (September 2004) Unlocking the potential of the human genome with RNA interference. Nature, 431 (7006). pp. 371-8. ISSN 1476-4687 (Electronic)

Harada, N., Hatchwell, E., Okamoto, N., Tsukahara, M., Kurosawa, K., Kawame, H., Kondoh, T., Ohashi, H., Tsukino, R., Kondoh, Y., Shimokawa, O., Ida, T., Nagai, T., Fukushima, Y., Yoshiura, K., Niikawa, N., Matsumoto, N. (February 2004) Subtelomere specific microarray based comparative genomic hybridisation: a rapid detection system for cryptic rearrangements in idiopathic mental retardation. Journal of Medical Genetics, 41 (2). pp. 130-136. ISSN 1468-6244

Harris, T. W., Chen, N., Cunningham, F., Tello-Ruiz, M., Antoshechkin, I., Bastiani, C., Bieri, T., Blasiar, D., Bradnam, K., Chan, J., Chen, C. K., Chen, W. J., Davis, P., Kenny, E., Kishore, R., Lawson, D., Lee, R., Muller, H. M., Nakamura, C., Ozersky, P., Petcherski, A., Rogers, A., Sabo, A., Schwarz, E. M., Van Auken, K., Wang, Q., Durbin, R., Spieth, J., Sternberg, P. W., Stein, L. D. (January 2004) WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res, 32 (Databa). D411-7. ISSN 1362-4962 (Electronic)

Harrison, M., Li, J., Degenhardt, Y., Hoey, T., Powers, S. (August 2004) Wip1-deficient mice are resistant to common cancer genes. Trends in Molecular Medicine, 10 (8). pp. 359-361. ISSN 1471-4914

He, L., Hannon, G. J. (August 2004) MicroRNAs: Small RNAs with a big role in gene regulation. Nature Reviews Genetics, 5 (8). pp. 522-532. ISSN 1471-0056

Hemann, M. T., Zilfou, J. T., Zhao, Z., Burgess, D. J., Hannon, G. J., Lowe, S. W. (June 2004) Suppression of tumorigenesis by the p53 target PUMA. Proc Natl Acad Sci U S A, 101 (25). pp. 9333-8. ISSN 0027-8424 (Print)

Henn, F. A., Vollmayr, B. (November 2004) Basic pathophysiological mechanisms in depression: what are they and how might they affect the course of the illness? Pharmacopsychiatry, 37 Sup. S152-6. ISSN 0176-3679 (Print)0176-3679 (Linking)

Henn, F. A., Vollmayr, B. (August 2004) Neurogenesis and depression: etiology or epiphenomenon? Biol Psychiatry, 56 (3). pp. 146-50. ISSN 0006-3223 (Print)0006-3223 (Linking)

Herbst, A., Salghetti, S. E., Kim, S. Y., Tansey, W. P. (May 2004) Multiple cell-type-specific elements regulate Myc protein stability. Oncogene, 23 (21). pp. 3863-71. ISSN 0950-9232 (Print)

Hernando, E., Nahle, Z., Juan, G., Diaz-Rodriguez, E., Alaminos, M., Hemann, M., Michel, L., Mittal, V., Gerald, W., Benezra, R., Lowe, S. W., Cordon-Cardo, C. (August 2004) Rb inactivation promotes genomic instability by uncoupling cell cycle progression from mitotic control. Nature, 430 (7001). pp. 797-802. ISSN 0028-0836

Hines, C. O., Childress, L. I., Kinney, J. B., Sulzer, M. P. (July 2004) Modeling of gravity-wave tail spectra in the middle atmosphere via numerical and Doppler-spread methods. Journal of Atmospheric and Solar-Terrestrial Physics, 66 (11). pp. 933-948. ISSN 1364-6826

Hirano, M., Hirano, T. (July 2004) Positive and negative regulation of SMC-DNA interactions by ATP and accessory proteins. EMBO J, 23 (13). pp. 2664-73. ISSN 0261-4189 (Print)

Hirano, T. (January 2004) Chromosome shaping by two condensins. Cell Cycle, 3 (1). pp. 26-8. ISSN 1538-4101 (Print)

Hoeppner, D. J., Spector, M. S., Ratliff, T. M., Kinchen, J. M., Granat, S., Lin, S. C., Bhusri, S. S., Conradt, B., Herman, M. A., Hengartner, M. O. (October 2004) eor-1 and eor-2 are required for cell-specific apoptotic death in C. elegans. Dev Biol, 274 (1). pp. 125-38. ISSN 0012-1606 (Print)

Hopfield, J. J., Brody, C. D. (January 2004) Learning rules and network repair in spike-timing-based computation networks. Proceedings of the National Academy of Sciences of the United States of America, 101 (1). pp. 337-342. ISSN 0027-8424

Horiuchi, J., Jiang, W., Zhou, H., Wu, P., Yin, J. C. (March 2004) Phosphorylation of conserved casein kinase sites regulates cAMP-response element-binding protein DNA binding in Drosophila. J Biol Chem, 279 (13). pp. 12117-25. ISSN 0021-9258 (Print)

Hu, P., Samudre, K., Wu, S., Sun, Y., Hernandez, N. (October 2004) CK2 phosphorylation of Bdp1 executes cell cycle-specific RNA polymerase III transcription repression. Mol Cell, 16 (1). pp. 81-92. ISSN 1097-2765 (Print)

Hu, P., Wu, S., Hernandez, N. (December 2004) A role for beta-actin in RNA polymerase III transcription. Genes Dev, 18 (24). pp. 3010-5. ISSN 0890-9369 (Print)

Hyun, S. W., Sui, X., Del Vecchio, R. L., Tonks, N. K., Passaniti, A., Goldblum, S. E. (November 2004) Protein tyrosine phosphatase (PTP) mu regulates endothelial cell (EC) proliferation, adhesion and migration. Molecular Biology of the Cell, 15. 226A-226A. ISSN 1059-1524

Iijima, K., Liu, H. P., Chiang, A. S., Hearn, S. A., Konsolaki, M., Zhong, Y. (April 2004) Dissecting the pathological effects of human Abeta40 and Abeta42 in Drosophila: a potential model for Alzheimer's disease. Proc Natl Acad Sci U S A, 101 (17). pp. 6623-8. ISSN 0027-8424 (Print)

International Chicken Genome SequencingConsortium, (December 2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature, 432 (7018). pp. 695-716. ISSN 0028-0836

International Human Genome Sequencing Consortium (October 2004) Finishing the euchromatic sequence of the human genome. Nature, 431 (7011). pp. 931-45. ISSN 0028-0836

Iossifov, I., Krauthammer, M., Friedman, C., Hatzivassiloglou, V., Bader, J. S., White, K. P., Rzhetsky, A. (May 2004) Probabilistic inference of molecular networks from noisy data sources. Bioinformatics, 20 (8). pp. 1205-13. ISSN 1367-4803 (Print)1367-4803 (Linking)

Itoh, H., Takahashi, A., Adachi, K., Noji, H., Yasuda, R., Yoshida, M., Kinosita, K. (January 2004) Mechanically driven ATP synthesis by F-1-ATPase. Nature, 427 (6973). pp. 465-468. ISSN 0028-0836

Izaurralde, Elisa , Spector, David L. (June 2004) Nucleus and gene expression: The interplay of transcriptional mechanisms that regulate gene and post-transcriptional expression. Current Opinion in Cell Biology, 16 (3). pp. 219-222. ISSN 0955-0674

Jakubiec, A., Notaise, J., Tournier, V., Hericourt, F., Block, M. A., Drugeon, G., van Aelst, L., Jupin, I. (August 2004) Assembly of turnip yellow mosaic virus replication complexes: Interaction between the proteinase and polymerase domains of the replication proteins. Journal of Virology, 78 (15). pp. 7945-7957. ISSN 0022-538X

Janardhan, A., Swigut, T., Hill, B., Myers, M. P., Skowronski, J. (January 2004) HIV-1 Nef binds the DOCK2-ELMO1 complex to activate rac and inhibit lymphocyte chemotaxis. PLoS Biol, 2 (1). E6. ISSN 1545-7885 (Electronic)

Janicki, S. M., Tsukamoto, T., Salghetti, S. E., Tansey, W. P., Sachidanandam, R., Prasanth, K. V. , Ried, T., Shav-Tal, Y., Bertrand, E., Singer, R. H., Spector, D. L. (March 2004) From silencing to gene expression: real-time analysis in single cells. Cell, 116 (5). pp. 683-98. ISSN 0092-8674 (Print)

Jeffrey Chen, Z., Wang, J., Tian, L., Lee, H. S., Wang, J. J., Chen, M., Lee, J. J., Josefsson, C., Madlung, A., Watson, B., Lippman, Z., Vaughn, M., Chris Pires, J., Colot, V., Doerge, R. W., Martienssen, R. A., Comai, L., Osborn, T. C. (August 2004) The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological journal of the Linnean Society. Linnean Society of London, 82 (4). pp. 689-700. ISSN 0024-4066 (Print)0024-4066 (Linking)

Jojic, V., Jojic, N., Meek, C., Geiger, D., Siepel, A., Haussler, D., Heckerman, D. (August 2004) Efficient approximations for learning phylogenetic HMM models from data. Bioinformatics, 20 Sup. i161-8. ISSN 1367-4803

Jones, D. Leanne, Yamashita, Yukiko M., Schulz, Cordula, Fuller, Margaret T. (2004) Regulation of stem cell self-renewal versus differentiation by a support cell niche: Lessons from the Drosophila male germ line. In: Handbook of stem cells. Academic Press, pp. 171-178.

Joshua-Tor, L. (July 2004) siRNAs at RISC. Structure, 12 (7). pp. 1120-1122. ISSN 0969-2126

Joshua-Tor, L., Johnston, S. A. (2004) The Bleomycin Hydrolases. In: Handbook of Proteolytic Enzymes. Elsevier Academic Press, pp. 1197-1201. ISBN 9780120796120

Juarez, M., Timmermans, M. (July 2004) MiRNAs specify dorsoventral polarity during leaf development. Developmental Biology, 271 (2). pp. 551-552. ISSN 0012-1606

Juarez, M. T., Kui, J. S., Thomas, J., Heller, B. A., Timmermans, M. C. (March 2004) microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature, 428 (6978). pp. 84-8. ISSN 1476-4687 (Electronic)

Juarez, M. T., Twigg, R. W., Timmermans, M. C. P. (September 2004) Specification of adaxial cell fate during maize leaf development. Development, 131 (18). pp. 4533-44. ISSN 0950-1991 (Print)

Julien, E., Herr, W. (June 2004) A switch in mitotic histone H4 lysine 20 methylation status is linked to M phase defects upon loss of HCF-1. Mol Cell, 14 (6). pp. 713-25. ISSN 1097-2765 (Print)

Kampa, D., Cheng, J., Kapranov, P., Yamanaka, M., Brubaker, S., Cawley, S., Drenkow, J., Piccolboni, A., Bekiranov, S., Helt, G., Tammana, H., Gingeras, T. R. (2004) Novel RNAs identified from a in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Research, 14 (3). pp. 331-342. ISSN 10889051 (ISSN) (Public Dataset)

Kan, J. L. C., Griffin, G., Hannon, G. J. (2004) Mining the genome with RNAi to select cancer drug targets. Drug Discovery Today: Therapeutic Strategies, 1 (4). pp. 397-401. ISSN 17406773 (ISSN)

Kannan, N., Neuwald, A. F. (May 2004) Evolutionary clues to protein kinase structural mechanisms. Faseb Journal, 18 (8). C189-C189. ISSN 0892-6638

Kannan, N., Neuwald, A. F. (August 2004) Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2alpha. Protein Sci, 13 (8). pp. 2059-77. ISSN 0961-8368 (Print)

Karandikar, U. C., Trott, R. L., Yin, J. R., Bishop, C. P., Bidwai, A. P. (March 2004) Drosophila CK2 regulates eye morphogenesis via phosphorylation of E(spl)M8. Mechanisms of Development, 121 (3). pp. 273-286. ISSN 0925-4773

Kato, M., Hata, N., Banerjee, N., Futcher, B., Zhang, M. Q. (2004) Identifying combinatorial regulation of transcription factors and binding motifs. Genome Biology, 5 (8). ISSN 1465-6914

Kepecs, A., Lisman, J. (June 2004) How to read a burst duration code. Neurocomputing, 58-60. pp. 1-6. ISSN 0925-2312

Kidner, C. A., Martienssen, R. A. (March 2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature, 428 (6978). pp. 81-4. ISSN 1476-4687 (Electronic)

Kim, J., Dittgen, T., Nimmerjahn, A., Waters, J., Pawlak, V., Helmchen, F., Schlesinger, S., Seeburg, P. H., Osten, P. (February 2004) Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons. Journal of Neuroscience Methods, 133 (1-2). pp. 81-90. ISSN 0165-0270

Kireeva, N., Lakonishok, M., Kireev, I., Hirano, T., Belmont, A. S. (September 2004) Visualization of early chromosome condensation: a hierarchical folding, axial glue model of chromosome structure. Journal of Cell Biology, 166 (6). pp. 775-785. ISSN 0021-9525

Kontaridis, M. I., Eminaga, S., Fornaro, M., Zito, C. I., Sordella, R., Settleman, J., Bennett, A. M. (June 2004) SHP-2 positively regulates myogenesis by coupling to the Rho GTPase signaling pathway. Molecular and Cellular Biology, 24 (12). pp. 5340-52. ISSN 0270-7306

Kopf, D., Westphal, S., Luley, C. W., Ritter, S., Gilles, M., Weber-Hamann, B., Lederbogen, F., Lehnert, H., Henn, F. A., Heuser, I., Deuschle, M. (October 2004) Lipid metabolism and insulin resistance in depressed patients: significance of weight, hypercortisolism, and antidepressant treatment. J Clin Psychopharmacol, 24 (5). pp. 527-31. ISSN 0271-0749 (Print)0271-0749 (Linking)

Koster, M. I., Kim, S., Mills, A. A., DeMayo, F. J., Roop, D. R. (January 2004) p63 is the molecular switch for initiation of an epithelial stratification program. Genes & Development, 18 (2). pp. 126-131. ISSN 0890-9369

Koulakov, A. A., Tsigankov, D. N. (August 2004) A stochastic model for retinocollicular map development. BMC Neurosci, 5. p. 30. ISSN 1471-2202 (Electronic)

Krapivsky, P. L., Ben-Naim, E., Grosse, I. R. (February 2004) Stable distributions in stochastic fragmentation. Journal of Physics a-Mathematical and General, 37 (8). pp. 2863-2880. ISSN 0305-4470

Kurita, T., Medina, R. T., Mills, A. A., Cunha, G. R. (October 2004) Role of p63 and basal cells in the prostate. Development, 131 (20). pp. 4955-4964. ISSN 0950-1991

Kurita, T., Mills, A. A., Cunha, G. R. (April 2004) Roles of p63 in the diethylstilbestrol-induced cervicovaginal adenosis. Development, 131 (7). pp. 1639-1649. ISSN 0950-1991

Kurland, J. F., Tansey, W. P. (April 2004) Crashing waves of destruction: the cell cycle and APC(Cdh1) regulation of SCF(Skp2). Cancer Cell, 5 (4). pp. 305-6. ISSN 1535-6108 (Print)

Lalanne, E., Honys, D., Johnson, A., Borner, G. H. H., Lilley, K. S., Dupree, P., Grossniklaus, U., Twell, D. (January 2004) SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in arabidopsis. Plant Cell, 16 (1). pp. 229-240. ISSN 1040-4651

Lalanne, E., Michaelidis, C., Moore, J. M., Gagliano, W., Johnson, A., Patel, R., Howden, R., Vielle-Calzada, J. P., Grossniklaus, U., Twell, D. (August 2004) Analysis of transposon insertion mutants highlights the diversity of mechanisms underlying male progamic development in arabidopsis. Genetics, 167 (4). pp. 1975-1986. ISSN 0016-6731

Lee, S., Helfman, D. M. (January 2004) Cytoplasmic p21Cip1 is involved in Ras-induced inhibition of the ROCK/LIMK/cofilin pathway. J Biol Chem, 279 (3). pp. 1885-91. ISSN 0021-9258 (Print)

Lian, Z., Lian, J., Urban, A. E., Colangelo, C., Kluger, Y., Zhang, X. Q., Konpe, D., Snyder, M., Newburger, P., Gingeras, T. R., Weissman, S. S. (November 2004) Global analysis of gene networks involved in hematopoiesis. Blood, 104 (11). 137B-137B. ISSN 0006-4971

Lippman, Z., Gendrel, A. V., Black, M., Vaughn, M. W., Dedhia, N., McCombie, W. R., Lavine, K., Mittal, V., May, B., Kasschau, K. D., Carrington, J. C., Doerge, R. W., Colot, V., Martienssen, R. (July 2004) Role of transposable elements in heterochromatin and epigenetic control. Nature, 430 (6998). pp. 471-6. ISSN 1476-4687 (Electronic)

Lippman, Z., Martienssen, R. A. (September 2004) The role of RNA interference in heterochromatic silencing. Nature, 431 (7006). pp. 364-70. ISSN 1476-4687 (Electronic)

Lippman, Z. B. (December 2004) Transposons, heterochromatin, and epigenetic landscapes in Arabidopsis thaliana. PhD thesis, Cold Spring Harbor Laboratory.

Liu, J., Carmell, M. A., Rivas, F. V., Marsden, C. G., Thomson, J. M., Song, J. J., Hammond, S. M., Joshua-Tor, L., Hannon, G. J. (September 2004) Argonaute2 is the catalytic engine of mammalian RNAi. Science, 305 (5689). pp. 1437-41. ISSN 1095-9203 (Electronic)

Long, D. D., Grosse, I., Marx, K. A. (July 2004) Coding and non-coding DNA thermal stability differences in eukaryotes studied by melting simulation, base shuffling and DNA nearest neighbor frequency analysis. Biophysical Chemistry, 110 (1-2). pp. 25-38. ISSN 0301-4622

Lowe, S. W., Cepero, E., Evan, G. (November 2004) Intrinsic tumour suppression. Nature, 432 (7015). pp. 307-15. ISSN 1476-4687 (Electronic)

Lynch, T. J., Bell, D. W., Sordella, R., Gurubhagavatula, S., Okimoto, R. A., Brannigan, B. W., Harris, P. L., Haserlat, S. M., Supko, J. G., Haluska, F. G., Louis, D. N., Christiani, D. C., Settleman, J., Haber, D. A. (May 2004) Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. The New England Journal of Medicine, 350 (21). pp. 2129-39. ISSN 1533-4406 (Electronic)

Lyon, Gholson J., Novick, Richard P. (2004) Peptide signaling in Staphylococcus aureus and other Gram-positive bacteria. Peptides, 25 (9). pp. 1389-1403. ISSN 0196-9781

MacDonald, E. C., Allen, P., Dalton, G., Moustakas, L. A., Heymans, C., Edmondson, E., Blake, C., Clewley, L., Hammell, M. C., Olding, E., Miller, L., Rawlings, S., Wall, J., Wegner, G., Wolf, C. (August 2004) The Oxford-Dartmouth Thirty Degree Survey - I. Observations and calibration of a wide-field multiband survey. Monthly Notices of the Royal Astronomical Society, 352 (4). pp. 1255-1272. ISSN 0035-8711

Machens, C. K., Wehr, M. S., Zador, A. M. (February 2004) Linearity of cortical receptive fields measured with natural sounds. J Neurosci, 24 (5). pp. 1089-100. ISSN 1529-2401 (Electronic)

Maravall, M., Koh, I. Y., Lindquist, W. B., Svoboda, K. (June 2004) Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortex. Cereb Cortex, 14 (6). pp. 655-64. ISSN 1047-3211 (Print)

Maravall, M., Stern, E. A., Svoboda, K. (July 2004) Development of intrinsic properties and excitability of layer 2/3 pyramidal neurons during a critical period for sensory maps in rat barrel cortex. J Neurophysiol, 92 (1). pp. 144-56. ISSN 0022-3077 (Print)

Markram, H., Toledo-Rodriguez, M., Wang, Y., Gupta, A., Silberberg, G., Wu, C. Z. (October 2004) Interneurons of the neocortical inhibitory system. Nature Reviews Neuroscience, 5 (10). pp. 793-807. ISSN 1471-0048

Martienssen, R., Lippman, Z., May, B., Ronemus, M., Vaughn, M. (2004) Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor symposia on quantitative biology, 69. pp. 371-9. ISSN 0091-7451 (Print)0091-7451 (Linking)

Martienssen, R., Lippman, Z., May, B., Vaughn, M., Gendrel, A. V., Ronemus, M., Volpe, T., Kidner, C., Colot, V. (March 2004) Transposons, small interfering RNA and the origin of heterochromatin. European Journal of Cell Biology, 83 (Suppl). p. 61. ISSN 0171-9335

Martienssen, R. A. (November 2004) Crop Plant Genome sequence: What is it good for? Crop Science, 44 (6). pp. 1898-1899. ISSN 0011-183X

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (2004) Sequencing the maize genome. Current Opinion in Plant Biology, 7 (2). pp. 102-107. ISSN 13695266 (ISSN)

Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A., McCombie, W. R. (April 2004) Sequencing the maize genome. Curr Opin Plant Biol, 7 (2). pp. 102-7. ISSN 1369-5266 (Print)

McKay, S. J., Trautner, J., Smith, M. J., Koop, B. F., Devlin, R. H. (August 2004) Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes. Genome, 47 (4). pp. 714-23. ISSN 0831-2796 (Print)

Meng, T. C., Buckley, D. A., Galic, S., Tiganis, T., Tonks, N. K. (September 2004) Regulation of insulin signaling through reversible oxidation of the protein-tyrosine phosphatases TC45 and PTP1B. J Biol Chem, 279 (36). pp. 37716-25. ISSN 0021-9258 (Print)

Michurina, T., Krasnov, P., Balazs, A., Nakaya, N., Vasilieva, T., Kuzin, B., Khrushchov, N., Mulligan, R. C., Enikolopov, G. N. (August 2004) Nitric oxide is a regulator of hematopoietic stem cell activity. Mol Ther, 10 (2). pp. 241-8. ISSN 1525-0016 (Print)

Micklos, D. A. (October 2004) Creating connections: Museums and the public understanding of research. Nature, 431 (7010). p. 743. ISSN 0028-0836

Mignone, J. L., Kukekov, V., Chiang, A. S., Steindler, D., Enikolopov, G. (February 2004) Neural stem and progenitor cells in nestin-GFP transgenic mice. J Comp Neurol, 469 (3). pp. 311-24. ISSN 0021-9967 (Print)

Min, J. R., Xu, R. M. (May 2004) Structural analysis of histone methyltransferases. Faseb Journal, 18 (8). C114-C114. ISSN 0892-6638

Mittal, V. (May 2004) Improving the efficiency of RNA interference in mammals. Nat Rev Genet, 5 (5). pp. 355-65.

Moses, John E., Baldwin, Jack E., Adlington, Robert M. (August 2004) An efficient synthesis of cyercene A. Tetrahedron Letters, 45 (34). pp. 6447-6448. ISSN 0040-4039

Muraki, M., Ohkawara, B., Hosoya, T., Onogi, H., Koizumi, J., Koizumi, T., Sumi, K., Jun-ichiro, Y., Murray, M. V., Kimura, H., Furuichi, K., Shibuya, H., Krainer, A. R., Suzuki, M., Hagiwara, M. (June 2004) Manipulation of alternative splicing by a newly developed inhibitor of Clks. Journal of Biological Chemistry, 279 (23). pp. 24246-24254. ISSN 0021-9258

Muraki, M., Ohkawara, B., Hosoya, T., Onogi, H., Koizumi, J., Koizumi, T., Sumi, K., Yomoda, J., Murray, M. V., Kimura, H., Furuichi, K., Shibuya, H., Krainer, A. R., Suzuki, M., Hagiwara, M. (2004) Manipulation of alternative splicing by a novel inhibitor of Clks. Journal of Pharmacological Sciences, 94 (S(1)). 244P-244P. ISSN 1347-8613

Murchison, E. P., Hannon, G. J. (June 2004) miRNAs on the move: miRNA biogenesis and the RNAi machinery. Curr Opin Cell Biol, 16 (3). pp. 223-9. ISSN 0955-0674 (Print)

Murphy, G. G., Fedorov, N. B., Giese, K. P., Ohno, M., Friedman, E., Chen, R., Silva, A. J. (November 2004) Increased neuronal excitability, synaptic plasticity, and learning in aged Kv beta 1.1 knockout mice. Current Biology, 14 (21). pp. 1907-1915. ISSN 0960-9822

Narita, M., Lowe, S. W. (March 2004) Executing cell senescence. Cell Cycle, 3 (3). pp. 244-6. ISSN 1538-4101 (Print)

Neuwald, A. F., Liu, J. S. (October 2004) Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model. BMC Bioinformatics, 5. p. 157. ISSN 1471-2105 (Electronic)

Niki, M., Di Cristofano, A., Zhao, M., Honda, H., Hirai, H., Van Aelst, L., Cordon-Cardo, C., Pandolfi, P. P. (December 2004) Role of Dok-1 and Dok-2 in leukemia suppression. J Exp Med, 200 (12). pp. 1689-95.

Niki, M., Di Cristofano, A., Zhao, M. M., Hirai, H., Van Aelst, L., Cordon-Cardo, C., Pandolfi, P. P. (November 2004) Critical role of Dok-1 and Dok-2 in leukemia suppression. Blood, 104 (11). 807A-807A. ISSN 0006-4971

Niki, M., Di Cristofano, A., Zhao, M. M., Honda, H., Hirai, H., Van Aelst, L., Cordon-Cardo, C., Pandolfi, P. P. (December 2004) Role of Dok-1 and Dok-2 in leukemia suppression. Journal of Experimental Medicine, 200 (12). pp. 1689-1695. ISSN 0022-1007

Nimchinsky, E. A., Yasuda, R., Oertner, T. G., Svoboda, K. (February 2004) The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. J Neurosci, 24 (8). pp. 2054-64. ISSN 1529-2401 (Electronic)

Oliynyk, Z., Briseno-Roa, L., Janowitz, T., Sondergeld, P., Fersht, A. R. (April 2004) Designing a metal-binding site in the scaffold of Escherichia coli KDO8PS. Protein Eng Des Sel, 17 (4). pp. 383-90. ISSN 1741-0126 (Print)1741-0126

Olshen, A. B., Venkatraman, E. S., Lucito, R., Wigler, M. H. (October 2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics, 5 (4). pp. 557-572. ISSN 1465-4644

Ono, T., Fang, Y., Spector, D. L., Hirano, T. (July 2004) Spatial and temporal regulation of Condensins I and II in mitotic chromosome assembly in human cells. Mol Biol Cell, 15 (7). pp. 3296-308.

Otsu, Y., Shahrezaei, V., Li, B., Raymond, L. A., Delaney, K. R., Murphy, T. H. (January 2004) Competition between phasic and asynchronous release for recovered synaptic vesicles at developing hippocampal autaptic synapses. Journal of Neuroscience, 24 (2). pp. 420-33. ISSN 0270-6474

Paddison, P. J., Caudy, A. A., Sachidanandam, R., Hannon, G. J. (2004) Short hairpin activated gene silencing in mammalian cells. In: RNA Interference, Editing and Modification: methods and protocols. Methods Mol Biol, 265 . Springer, pp. 85-100.

Paddison, P. J., Cleary, M., Silva, J. M., Chang, K., Sheth, N., Sachidanandam, R., Hannon, G. J. (November 2004) Cloning of short hairpin RNAs for gene knockdown in mammalian cells. Nat Methods, 1 (2). pp. 163-7. ISSN 1548-7091 (Print)

Paddison, P. J., Silva, J. M., Conklin, D. S., Schlabach, M., Li, M., Aruleba, S., Balija, V., O'Shaughnessy, A., Gnoj, L., Scobie, K., Chang, K., Westbrook, T., Cleary, M., Sachidanandam, R., McCombie, W. R., Elledge, S. J., Hannon, G. J. (March 2004) A resource for large-scale RNA-interference-based screens in mammals. Nature, 428 (6981). pp. 427-31. ISSN 1476-4687 (Electronic)

Paddison, Patrick J. (2004) RNA interference in mammals: the quest for illuminating gene function. PhD thesis, Cold Spring Harbor Laboratory.

Paddison, Patrick J., Hannon, Gregory J. (2004) RNA Interference in Mammals: Journey to the Center of Human Disease. In: Molecular Cancer Therapeutics. John Wiley & Sons, Inc., Hoboken, NJ, pp. 55-72. ISBN 9780471656166

Page, D. R., Kohler, C., da Costa-Nunes, J. A., Baroux, C., Moore, J. M., Grossniklaus, U. (March 2004) Intrachromosomal excision of a hybrid Ds element induces large genomic deletions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 101 (9). pp. 2969-2974. ISSN 0027-8424

Pawlak, G., McGarvey, T. W., Nguyen, T. B., Tomaszewski, J. E., Puthiyaveettil, R., Malkowicz, S. B., Helfman, D. M. (June 2004) Alterations in tropomyosin isoform expression in human transitional cell carcinoma of the urinary bladder. Int J Cancer, 110 (3). pp. 368-73. ISSN 0020-7136 (Print)

Pearlmutter, B. A., Zador, A. M. (2004) Monaural source separation using spectral cues. In: Independent Component Analysis and Blind Signal Separation. Lecture Notes in Computer Science, 3195 . Springer-Verlag Berlin, Berlin, pp. 478-485. ISBN 0302-9743

Penel, A., Drake, C. (May 2004) Timing variations in music performance: Musical communication, perceptual compensation, and/or motor control? Perception & Psychophysics, 66 (4). pp. 545-562. ISSN 0031-5117

Pollock, L. (July 2004) Talking science. PLoS Biol, 2 (7). E210. ISSN 1545-7885 (Electronic)

Pologruto, T. A., Yasuda, R., Svoboda, K. (October 2004) Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. J Neurosci, 24 (43). pp. 9572-9. ISSN 1529-2401 (Electronic)

Prasanth, S. G., Mendez, J., Prasanth, K. V. , Stillman, B. (January 2004) Dynamics of pre-replication complex proteins during the cell division cycle. Philos Trans R Soc Lond B Biol Sci, 359 (1441). pp. 7-16. ISSN 0962-8436 (Print)

Prasanth, S. G., Prasanth, K. V. , Siddiqui, K., Spector, D. L., Stillman, B. (July 2004) Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance. EMBO J, 23 (13). pp. 2651-63. ISSN 0261-4189 (Print)

Rapp, S., Baader, M., Hu, M., Jennen-Steinmetz, C., Henn, F. A., Thome, J. (2004) Differential regulation of synaptic vesicle proteins by antidepressant drugs. Pharmacogenomics J, 4 (2). pp. 110-3. ISSN 1470-269X (Print)1470-269X (Linking)

Regulski, M., Stasiv, Y., Tully, T., Enikolopov, G. (October 2004) Essential function of nitric oxide synthase in Drosophila. Current Biology, 14 (20). R881-R882. ISSN 0960-9822

Reigl, M., Alon, U., Chklovskii, D. B. (2004) Search for computational modules in the C. elegans brain. BMC Biol, 2. p. 25. ISSN 1741-7007 (Electronic)

Revyakin, A., Ebright, R. H., Strick, T. R. (April 2004) Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation. Proceedings of the National Academy of Sciences of the United States of America, 101 (14). pp. 4776-4780. ISSN 0027-8424

Rial Verde, E. M. (April 2004) THE ROLE OF THE IMMEDIATE-EARLY GENE ARC IN SYNAPTIC TRANSMISSION. PhD thesis, Cold Spring Harbor Laboratory.

Robson, M. E., Glogowski, E., Sommer, G., Antonescu, C. R., Nafa, K., Maki, R. G., Ellis, N., Besmer, P., Brennan, M., Offit, K. (February 2004) Pleomorphic characteristics of a germ-line KIT mutation in a large kindred with gastrointestinal stromal tumors, hyperpigmentation, and dysphagia. Clin Cancer Res, 10 (4). pp. 1250-4. ISSN 1078-0432 (Print)1078-0432 (Linking)

Rodriguez, R., Adlington, R. M., Moses, J. E., Cowley, A., Baldwin, J. E. (September 2004) A new and efficient method for o-quinone methide intermediate generation: application to the biomimetic synthesis of (+/-)-Alboatrin. Org Lett, 6 (20). pp. 3617-9. ISSN 1523-7060 (Print)1523-7052

Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., Pappin, D. J. (December 2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics, 3 (12). pp. 1154-69. ISSN 1535-9476 (Print)1535-9476 (Linking)

Ruiz-Canada, C., Ashley, J., Moeckel-Cole, S., Drier, E., Yin, J., Budnik, V. (May 2004) New synaptic bouton formation is disrupted by misregulation of microtubule stability in aPKC mutants. Neuron, 42 (4). pp. 567-580. ISSN 0896-6273

Ruthazer, E. S., Cline, H. T. (April 2004) Insights into activity-dependent map formation from the retinotectal system: a middle-of-the-brain perspective. J Neurobiol, 59 (1). pp. 134-46. ISSN 0022-3034 (Print)

Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboue, P. A., Weng, W., Wilbur, W. J., Hatzivassiloglou, V., Friedman, C. (February 2004) GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J Biomed Inform, 37 (1). pp. 43-53. ISSN 1532-0464 (Print)1532-0464 (Linking)

Sachidanandam, R. (September 2004) RNAi: design and analysis. Curr Protoc Bioinformatics, Chapte. Unit 12.3. ISSN 1934-340X (Electronic)

Saitoh, N., Spahr, C. S., Patterson, S. D., Bubulya, P., Neuwald, A. F., Spector, D. L. (August 2004) Proteomic analysis of interchromatin granule clusters. Mol Biol Cell, 15 (8). pp. 3876-90. ISSN 1059-1524 (Print)

Schindler, M., Munch, J., Brenner, M., Stahl-Hennig, C., Skowronski, J., Kirchhoff, F. (October 2004) Comprehensive analysis of Nef functions selected in simian immunodeficiency virus-infected macaques. Journal of Virology, 78 (19). pp. 10588-10597. ISSN 0022-538X

Schloss, P., Henn, F. A. (April 2004) New insights into the mechanisms of antidepressant therapy. Pharmacol Ther, 102 (1). pp. 47-60. ISSN 0163-7258 (Print)0163-7258 (Linking)

Schmitt, A., May, B., Muller, B., Zink, M., Braus, D. F., Henn, F. A. (January 2004) [Effect of antipsychotics on glutaminergic neural transmission in the animal model]. Nervenarzt, 75 (1). pp. 16-22. ISSN 0028-2804 (Print)0028-2804 (Linking)

Schmitt, A., Weber, S., Jatzko, A., Braus, D. F., Henn, F. A. (January 2004) Hippocampal volume and cell proliferation after acute and chronic clozapine or haloperidol treatment. J Neural Transm, 111 (1). pp. 91-100. ISSN 0300-9564 (Print)0300-9564 (Linking)

Schoolnik, G. K., Summers, W. C., Watson, J. D. (May 2004) Phage offer a real alternative. Nature Biotechnology, 22 (5). pp. 505-506. ISSN 1087-0156

Schroeder, J. B., Krul, A., Riske, F.J. (March 2004) Comparison of tangential flow filtration and centrifugation for monoclonal antibody harvest clarification. In: ACS National Convention, Anaheim CA..

Schulz, T. W., Nakagawa, T., Licznerski, P., Pawlak, V., Kolleker, A., Rozov, A., Kim, J., Dittgen, T., Kohr, G., Sheng, M., Seeburg, P. H., Osten, P. (September 2004) Actin/alpha-actinin-dependent transport of AMPA receptors in dendritic spines: role of the PDZ-LIM protein RIL. Journal of Neuroscience, 24 (39). pp. 8584-94. ISSN 0270-6474

Sdek, P., Ying, H. Q., Zheng, H. W., Margulis, A., Tang, X. R., Tian, K., Xiao, Z. X. J. (December 2004) The central acidic domain of MDM2 is critical in inhibition of retinoblastoma-mediated suppression of E2F and cell growth. Journal of Biological Chemistry, 279 (51). pp. 53317-53322. ISSN 0021-9258

Seaberg, R. M., Smukler, S. R., Kieffer, T. J., Enikolopov, G., Asghar, Z., Wheeler, M. B., Korbutt, G., van der Kooy, D. (September 2004) Clonal identification of multipotent precursors from adult mouse pancreas that generate neural and pancreatic lineages. Nature Biotechnology, 22 (9). pp. 1115-1124. ISSN 1087-0156

Sebat, J., Lakshmi, B., Troge, J. E., Alexander, J., Young, J., Lundin, P., Maner, S., Massa, H., Walker, M., Chi, M., Navin, N. E., Lucito, R., Healy, J., Hicks, J. B., Ye, K., Reiner, A., Gilliam, T. C., Trask, B., Patterson, N., Zetterberg, A., Wigler, M. H. (July 2004) Large-scale copy number polymorphism in the human genome. Science, 305 (5683). pp. 525-8. ISSN 1095-9203 (Electronic)

Seeger, G., Schloss, P., Schmidt, M. H., Ruter-Jungfleisch, A., Henn, F. A. (August 2004) Gene-environment interaction in hyperkinetic conduct disorder (HD + CD) as indicated by season of birth variations in dopamine receptor (DRD4) gene polymorphism. Neurosci Lett, 366 (3). pp. 282-6. ISSN 0304-3940 (Print)0304-3940 (Linking)

Shao, M. H., Zheng, H. Q., Hu, Y., Liu, D. H., Jang, J. C., Ma, H., Huang, H. (October 2004) The GAOLAOZHUANGREN1 gene encodes a putative glycosyltransferase that is critical for normal development and carbohydrate metabolism. Plant and Cell Physiology, 45 (10). pp. 1453-1460. ISSN 0032-0781

Shav-Tal, Y., Darzacq, X., Shenoy, S. M., Fusco, D., Janicki, S. M., Spector, D. L., Singer, R. H. (June 2004) Dynamics of single mRNPs in nuclei of living cells. Science, 304 (5678). pp. 1797-1800. ISSN 0036-8075

Shefi, O., Harel, A., Chklovskii, D. B., Ben-Jacob, E., Ayali, A. (June 2004) Biophysical constraints on neuronal branching. Neurocomputing, 58-60. pp. 487-495. ISSN 0925-2312

Shi, H., Cordin, O., Minder, C. M., Linder, P., Xu, R. M. (December 2004) Crystal structure of the human ATP-dependent splicing and export factor UAP56. Proc Natl Acad Sci U S A, 101 (51). pp. 17628-33. ISSN 0027-8424 (Print)

Siepel, A., Haussler, D. (2004) Combining phylogenetic and hidden Markov models in biosequence analysis. J Comput Biol, 11 (2-3). pp. 413-28. ISSN 1066-5277 (Print)1066-5277

Siepel, A., Haussler, D. (2004) Computational identification of evolutionarily conserved exons. Proceedings of the eighth annual international conference on Resaerch in computational molecular biology. pp. 177-186.

Siepel, A., Haussler, D. (March 2004) Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Mol Biol Evol, 21 (3). pp. 468-88. ISSN 0737-4038 (Print)0737-4038

Silva, J., Chang, K., Hannon, G. J., Rivas, F. V. (November 2004) RNA-interference-based functional genomics in mammalian cells: reverse genetics coming of age. Oncogene, 23 (51). pp. 8401-9. ISSN 0950-9232 (Print)

Silva, J. M., Mizuno, H., Brady, A., Lucito, R., Hannon, G. J. (April 2004) RNA interference microarrays: high-throughput loss-of-function genetics in mammalian cells. Proc Natl Acad Sci U S A, 101 (17). pp. 6548-52. ISSN 0027-8424 (Print)

Singh, N. K., Raghuvanshi, S., Srivastava, S. K., Gaur, A., Pal, A. K., Dalal, V., Singh, A., Ghazi, I. A., Bhargav, A., Yadav, M., Dixit, A., Batra, K., Gaikwad, K., Sharma, T. R., Mohanty, A., Bharti, A. K., Kapur, A., Gupta, V., Kumar, D., Vij, S., Vydianathan, R., Khurana, P., Sharma, S., McCombie, W. R., Messing, J., Wing, R., Sasaki, T., Mohapatra, T., Khurana, J. P., Tyagi, A. K. (2004) Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny. Functional and Integrative Genomics, 4 (2). pp. 102-117. ISSN 1438793X (ISSN)

Smirnov, I. P., Zhu, X., Taylor, T., Huang, Y., Ross, P., Papayanopoulos, I. A., Martin, S. A., Pappin, D. J. (May 2004) Suppression of alpha-cyano-4-hydroxycinnamic acid matrix clusters and reduction of chemical noise in MALDI-TOF mass spectrometry. Anal Chem, 76 (10). pp. 2958-65. ISSN 0003-2700 (Print)0003-2700 (Linking)

Smith, A. L., Parsons, C. H., Lanyon, R. G., Bizley, J. K., Akerman, C. J., Baker, G. E., Dempster, A. C., Thompson, I. D., King, A. J. (June 2004) An investigation of the role of auditory cortex in sound localization using muscimol-releasing Elvax. European Journal of Neuroscience, 19 (11). pp. 3059-3072. ISSN 0953-816X

Song, J. J., Smith, S. K., Hannon, G. J., Joshua-Tor, L. (September 2004) Crystal structure of argonaute and its implications for RISC slicer activity. Science, 305 (5689). pp. 1434-1437. ISSN 0036-8075 (Public Dataset)

Sordella, R., Bell, D. W., Haber, D. A., Settleman, J. (August 2004) Gefitinib-sensitizing EGFR mutations in lung cancer activate anti-apoptotic pathways. Science, 305 (5687). pp. 1163-7. ISSN 1095-9203 (Electronic)

Spector, D. L. (September 2004) Stopping for FISH and chips along the chromatin fiber superhighway. Mol Cell, 15 (6). pp. 844-6. ISSN 1097-2765 (Print)

Spector, D. L. (May 2004) Visualizing the central dogma in living cells: DNA -> RNA -> protein. Faseb Journal, 18 (8). C312-C312. ISSN 0892-6638

Stasiv, Y., Kuzin, B., Regulski, M., Tully, T., Enikolopov, G. (August 2004) Regulation of multimers via truncated isoforms: a novel mechanism to control nitric-oxide signaling. Genes Dev, 18 (15). pp. 1812-23. ISSN 0890-9369 (Print)

Steffan, J. S., Agrawal, N., Pallos, J., Rockabrand, E., Trotman, L. C., Slepko, N., Illes, K., Lukacsovich, T., Zhu, Y. Z., Cattaneo, E., Pandolfi, P. P., Thompson, L. M., Marsh, J. L. (April 2004) SUMO Modification of Huntingtin and Huntington's Disease Pathology. Science, 304 (5667). pp. 100-104. ISSN 00368075 (ISSN)

Stein, L. D. (October 2004) Human genome: end of the beginning. Nature, 431 (7011). pp. 915-6. ISSN 1476-4687 (Electronic)

Stein, L. D. (October 2004) Using the Reactome database. Curr Protoc Bioinformatics, Chapte. Unit 8.7.

Stepanyants, A., Tamas, G., Chklovskii, D. B. (June 2004) Are spatial positions of dendritic and axonal branches correlated or independent? Neurocomputing, 58-60. pp. 477-485. ISSN 0925-2312

Stepanyants, A., Tamas, G., Chklovskii, D. B. (July 2004) Class-specific features of neuronal wiring. Neuron, 43 (2). pp. 251-9. ISSN 0896-6273 (Print)

Stewart, D., Stillman, B. (2004) Epigenetics. In: Cold Spring Harbor Symposia on Quantitative Biology LXIX: Epigenetics, Cold Spring Harbor.

Stillman, Bruce (2004) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Strekalova, T., Spanagel, R., Bartsch, D., Henn, F. A., Gass, P. (November 2004) Stress-induced anhedonia in mice is associated with deficits in forced swimming and exploration. Neuropsychopharmacology, 29 (11). pp. 2007-17. ISSN 0893-133X (Print)0006-3223 (Linking)

Strick, T. R., Kawaguchi, T., Hirano, T. (May 2004) Real-time detection of single-molecule DNA compaction by condensin I. Curr Biol, 14 (10). pp. 874-80. ISSN 0960-9822 (Print)

Sui, X., Hyun, S. W., Kiser, T. D., Del Vecchio, R. L., Tonks, N. K., Passaniti, A., Goldblum, S. E. (November 2004) Receptor protein tyrosine phosphatase (PTP) mu regulates the endothelial paracellular pathway. Molecular Biology of the Cell, 15. 428A-428A. ISSN 1059-1524

Sundvall, M., Maatta, J. A., Peri, L., Junttila, T. T., Egeblad, M., Elenius, K. (December 2004) Ligand-independent signaling by a tumor-associated isoform of ErbB4. Cancer Research, 64 (7 Supp). p. 23. ISSN 1078-0432

Svingen, P. A., Loegering, D., Rodriquez, J., Meng, X. W., Mesner, P. W., Holbeck, S., Monks, A., Krajewski, S., Scudiero, D. A., Sausville, E. A., Reed, J. C., Lazebnik, Y. A., Kaufmann, S. H. (October 2004) Components of the cell death machine and drug sensitivity of the National Cancer Institute cell line panel. Clinical Cancer Research, 10 (20). pp. 6807-6820. ISSN 1078-0432

Svoboda, K. (August 2004) Do spines and dendrites distribute dye evenly? Trends in Neurosciences, 27 (8). pp. 445-446. ISSN 0166-2236

Svoboda, P., Stein, P., Anger, M., Bernstein, E., Hannon, G. J., Schultz, R. M. (May 2004) RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos. Developmental Biology, 269 (1). pp. 276-285. ISSN 0012-1606

Swigut, T., Alexander, L., Morgan, J., Lifson, J., Mansfield, K. G., Lang, S., Johnson, R. P., Skowronski, J., Desrosiers, R. (December 2004) Impact of nef-mediated downregulation of major histocompatibility complex class I on immune response to simian immunodeficiency virus. Journal of Virology, 78 (23). pp. 13335-13344. ISSN 0022-538X

Tansey, W. P. (July 2004) Death, destruction, and the proteasome. N Engl J Med, 351 (4). pp. 393-4. ISSN 1533-4406 (Electronic)

Tansey, W. P. (November 2004) Transcriptional control and the ubiquitin/proteasome system. Molecular Biology of the Cell, 15 (Suppl.). 119A. ISSN 1059-1524

Tansey, W. P. , Ezhkova, E. (May 2004) Transcriptional control and the ubiquitin-proteasome system. Faseb Journal, 18 (8). C315-C315 Suppl S.. ISSN 0892-6638

Tchernichovski, O., Lints, T. J., Deregnaucourt, S., Cimenser, A., Mitra, P. P. (2004) Studying the song development process rationale and methods. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 348-363. ISBN 0077-8923

Thomas, E. E. (April 2004) Exploring Repetitive Sequences in the Human Genome. PhD thesis, Cold Spring Harbor Laboratory.

Thomas, E. E., Srebro, N., Sebat, J., Navin, N., Healy, J., Mishra, B., Wigler, M. H. (July 2004) Distribution of short paired duplications in mammalian genomes. Proc Natl Acad Sci U S A, 101 (28). pp. 10349-54. ISSN 0027-8424 (Print)

Tian, G. W., Mohanty, A., Chary, S. N., Li, S. J., Paap, B., Drakakaki, G., Kopec, C. D., Li, J. X., Ehrhardt, D., Jackson, D., Rhee, S. Y., Raikhel, N. V., Citovsky, V. (May 2004) High-throughput fluorescent tagging of full-length arabidopsis gene products in planta. Plant Physiology, 135 (1). pp. 25-38. ISSN 0032-0889

Timmermans, M. C., Brutnell, T. P., Becraft, P. W. (September 2004) The 46th Annual Maize Genetics Conference. Unlocking the secrets of the maize genome. Plant Physiol, 136 (1). pp. 2633-40. ISSN 0032-0889 (Print)

Timmermans, M. C., Juarez, M. T., Phelps-Durr, T. L. (2004) A conserved microRNA signal specifies leaf polarity. Cold Spring Harb Symp Quant Biol, 69. pp. 409-17. ISSN 0091-7451 (Print)

Toledo-Rodriguez, M., Blumenfeld, B., Wu, C. Z., Luo, J. Y., Attali, B., Goodman, P., Markram, H. (December 2004) Correlation maps allow neuronal electrical properties to be predicted from single-cell gene expression profiles in rat neocortex. Cerebral Cortex, 14 (12). pp. 1310-1327. ISSN 1047-3211

Tolia, N. H. (2004) STRUCTURAL AND BIOCHEMICAL STUDIES OF EBA-175, A PROTEIN THAT MEDIATES ERYTHROCYTE INVASION BY THE MALARIA PARASITE PLASMODIUM FALCIPARUM. PhD thesis, Cold Spring Harbor Laboratory.

Tubon, T. C., Tansey, W. P., Herr, W. (April 2004) A nonconserved surface of the TFIIB zinc ribbon domain plays a direct role in RNA polymerase II recruitment. Molecular and Cellular Biology, 24 (7). pp. 2863-2874. ISSN 0270-7306

Tully, T. (September 2004) From genes to drugs for cognitive dysfunction. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 130B (1). p. 3. ISSN 0148-7299

Van Aelst, L., Cline, H. T. (June 2004) Rho GTPases and activity-dependent dendrite development. Curr Opin Neurobiol, 14 (3). pp. 297-304. ISSN 0959-4388 (Print)

Van Kempen, L. C. L. T., Meier, F., Egeblad, M., Kersten-Niessen, M. J. F., Garbe, C., Weidle, U. H., Van Muijen, G. N. P., Herlyn, M., Bloemers, H. P. J., Swart, G. W. M. (2004) Truncation of activated leukocyte cell adhesion molecule: A gateway to melanoma metastasis. Journal of Investigative Dermatology, 122 (5). pp. 1293-1301. ISSN 0022202X (ISSN)

Verechtchaguina, T., Schimansky-Geier, L., Sokolov, I. M. (September 2004) Spectra and waiting-time densities in firing resonant and nonresonant neurons. Phys Rev E Stat Nonlin Soft Matter Phys, 70 (3 Pt 1). 031916. ISSN 1539-3755 (Print)1539-3755 (Linking)

Vollmayr, B., Bachteler, D., Vengeliene, V., Gass, P., Spanagel, R., Henn, F. (April 2004) Rats with congenital learned helplessness respond less to sucrose but show no deficits in activity or learning. Behav Brain Res, 150 (1-2). pp. 217-21. ISSN 0166-4328 (Print)0166-4328 (Linking)

Wagner, T., Krampe, H., Stawicki, S., Reinhold, J., Jahn, H., Mahlke, K., Barth, U., Sieg, S., Maul, O., Galwas, C., Aust, C., Kroner-Herwig, B., Brunner, E., Poser, W., Henn, F., Ruther, E., Ehrenreich, H. (November 2004) Substantial decrease of psychiatric comorbidity in chronic alcoholics upon integrated outpatient treatment - results of a prospective study. J Psychiatr Res, 38 (6). pp. 619-35. ISSN 0022-3956 (Print)0022-3956 (Linking)

Wang, Y., Toledo-Rodriguez, M., Gupta, A., Wu, C. Z., Silberberg, G., Luo, J. Y., Markram, H. (November 2004) Anatomical, physiological and molecular properties of Martinotti cells in the somatosensory cortex of the juvenile rat. Journal of Physiology-London, 561 (1). pp. 65-90. ISSN 0022-3751

Wang, Y., Zhong, Y. (February 2004) TARGETing "when" and "where". Sci STKE, 2004 (220). pe5. ISSN 1525-8882 (Electronic)

Wang, Y. L., Guo, H. F., Pologruto, T. A., Hannan, F., Hakker, I., Svoboda, K., Zhong, Y. (July 2004) Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. Journal of Neuroscience, 24 (29). pp. 6507-6514. ISSN 0270-6474

Warren, D. J., Koulakov, A. A., Normann, R. A. (September 2004) Spatiotemporal encoding of a bar's direction of motion by neural ensembles in cat primary visual cortex. Annals of Biomedical Engineering, 32 (9). pp. 1265-1275. ISSN 0090-6964

Wegener, L. G. L., Povinelli, M. L., Green, A. G., Mitra, P. P., Stark, J. B., Littlewood, P. B. (2004) The effect of propagation nonlinearities on the information capacity of WDM optical fiber systems: cross-phase modulation and four-wave mixing. Physica D: Nonlinear Phenomena, 189 (1–2). pp. 81-99. ISSN 0167-2789

Welch, J. J., Watts, J. A., Vakoc, C. R., Yao, Y., Wang, H., Hardison, R. C., Blobel, G. A., Chodosh, L. A., Weiss, M. J. (2004) Global regulation of erythroid gene expression by transcription factor GATA-1. Blood, 104 (10). pp. 3136-3147. ISSN 00064971 (ISSN)

Wendel, H. G., De Stanchina, E., Fridman, J. S., Malina, A., Ray, S., Kogan, S., Cordon-Cardo, C., Pelletier, J., Lowe, S. W. (March 2004) Survival signalling by Akt and eIF4E in oncogenesis and cancer therapy. Nature, 428 (6980). pp. 332-7. ISSN 1476-4687 (Electronic)

Wendel, H. G., Lowe, S. W. (July 2004) Reversing drug resistance in vivo. Cell Cycle, 3 (7). pp. 847-9. ISSN 1551-4005 (Electronic)

Wicklow, B. A., Ivanovich, J. L., Plews, M. M., Salo, T. J., Noetzel, M. J., Lueder, G. T., Cartegni, L., Kaback, M. M., Sandhoff, K., Steiner, R. D., Triggs-Raine, B. L. (June 2004) Severe subacute G(M2) gangliosidosis caused by an apparently silent HEXA mutation (V324V) that results in aberrant splicing and reduced HEXA mmRNA. American Journal of Medical Genetics Part A, 127A (2). pp. 158-166. ISSN 0148-7299

Wilbrecht, L., Kirn, J. R. (June 2004) Neuron addition and loss in the song system: regulation and function. Documentation. NY Academy of Sciences.

Wilson, R. I., Turner, G. C., Laurent, G. (2004) Transformation of Olfactory Representations in the Drosophila Antennal Lobe. Science, 303 (5656). pp. 366-370. ISSN 00368075 (ISSN)

Wolf, J., Sartorius, A., Alm, B., Henn, F. A. (April 2004) Clozapine-induced lupus erythematosus. J Clin Psychopharmacol, 24 (2). pp. 236-8. ISSN 0271-0749 (Print)0271-0749 (Linking)

Wright, Jesse S., Lyon, Gholson J., George, Elizabeth A., Muir, Tom W., Novick, Richard P. (2004) Hydrophobic interactions drive ligand-receptor recognition for activation and inhibition of staphylococcal quorum sensing. Proceedings of the National Academy of Sciences of the United States of America, 101 (46). pp. 16168-16173. ISSN 0027-8424

Wu, Y., Egerton, G., Pappin, D. J., Harrison, R. A., Wilkinson, M. C., Underwood, A., Bianco, A. E. (April 2004) The Secreted Larval Acidic Proteins (SLAPs) of Onchocerca spp. are encoded by orthologues of the alt gene family of Brugia malayi and have host protective potential. Mol Biochem Parasitol, 134 (2). pp. 213-24. ISSN 0166-6851 (Print)0166-6851 (Linking)

Yasuda, R., Nimchinsky, E. A., Scheuss, V., Pologruto, T. A., Oertner, T. G., Sabatini, B. L., Svoboda, K. (February 2004) Imaging calcium concentration dynamics in small neuronal compartments. Sci STKE, 2004 (219). pl5. ISSN 1525-8882 (Electronic)

Yokoyama, A., Wang, Z., Wysocka, J., Sanyal, M., Aufiero, D. J., Kitabayashi, I., Herr, W., Cleary, M. L. (July 2004) Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression. Molecular and Cellular Biology, 24 (13). pp. 5639-5649. ISSN 0270-7306

Zatkova, A., Messiaen, L., Vandenbroucke, I., Wieser, R., Fonatsch, C., Krainer, A. R., Wimmer, K. (2004) Disruption of exonic splicing enhancer elements is the principal cause of exon skipping associated with seven nonsense or missense alleles of NF1. Human Mutation, 24 (6). pp. 491-501. ISSN 1059-7794

Zeamari, S., Rumping, G., Floot, B., Lyons, S., Stewart, F. A. (March 2004) In vivo bioluminescence imaging of locally disseminated colon carcinoma in rats. Br J Cancer, 90 (6). pp. 1259-64. ISSN 0007-0920 (Print)0007-0920 (Linking)

Zhang, J., Li, F., Li, J., Zhang, M. Q., Zhang, X. G. (November 2004) Evidence and characteristics of putative human alpha recombination hotspots. Human Molecular Genetics, 13 (22). pp. 2823-2828. ISSN 0964-6906

Zhang, Z., Carmichael, G. G. (2004) Methods for the analysis of adenosine-to-inosine editing in RNA. In: mRNA Processing and Metabolism: methods and protocols. Methods Mol Biol, 257 . Humana Press, pp. 75-84. ISBN 1064-3745 (Print)

Zhang, Z., Krainer, A. R. (November 2004) Involvement of SR proteins in mRNA surveillance. Molecular Cell, 16 (4). pp. 597-607. ISSN 1097-2765

Zhong, Y., Wu, C. F. (February 2004) Neuronal activity and adenylyl cyclase in environment-dependent plasticity of axonal outgrowth in Drosophila. Journal of Neuroscience, 24 (6). pp. 1439-1445. ISSN 0270-6474

Zhu, Y. H., Stornetta, R. L., Zhu, J. J. (June 2004) Chandelier cells control excessive cortical excitation: Characteristics of whisker-evoked synaptic responses of layer 2/3 nonpyramidal and pyramidal neurons. Journal of Neuroscience, 24 (22). pp. 5101-5108. ISSN 0270-6474

Zhu, Y. H., Zhu, J. J. (February 2004) Rapid arrival and integration of ascending sensory information in layer 1 nonpyramidal neurons and tuft dendrites of layer 5 pyramidal neurons of the neocortex. Journal of Neuroscience, 24 (6). pp. 1272-1279. ISSN 0270-6474

Zink, M., Henn, F. A., Thome, J. (February 2004) Combination of amisulpride and olanzapine in treatment-resistant schizophrenic psychoses. Eur Psychiatry, 19 (1). pp. 56-8. ISSN 0924-9338 (Print)0924-9338 (Linking)

Zink, M., Knopf, U., Henn, F. A., Thome, J. (January 2004) Combination of clozapine and amisulpride in treatment-resistant schizophrenia--case reports and review of the literature. Pharmacopsychiatry, 37 (1). pp. 26-31. ISSN 0176-3679 (Print)0176-3679 (Linking)

Zink, M., Otto, C., Zorner, B., Zacher, C., Schutz, G., Henn, F. A., Gass, P. (April 2004) Reduced expression of brain-derived neurotrophic factor in mice deficient for pituitary adenylate cyclase activating polypeptide type-I-receptor. Neurosci Lett, 360 (1-2). pp. 106-8. ISSN 0304-3940 (Print)0304-3940 (Linking)

Zink, M., Schmitt, A., Henn, F. A., Gass, P. (December 2004) Differential expression of glutamate transporters EAAT1 and EAAT2 in mice deficient for PACAP-type I receptor. J Neural Transm, 111 (12). pp. 1537-42. ISSN 0300-9564 (Print)0300-9564 (Linking)

Zink, M., Schmitt, A., May, B., Muller, B., Braus, D. F., Henn, F. A. (July 2004) Differential effects of long-term treatment with clozapine or haloperidol on GABA transporter expression. Pharmacopsychiatry, 37 (4). pp. 171-4. ISSN 0176-3679 (Print)0176-3679 (Linking)

Zink, M., Schmitt, A., May, B., Muller, B., Demirakca, T., Braus, D. F., Henn, F. A. (February 2004) Differential effects of long-term treatment with clozapine or haloperidol on GABAA receptor binding and GAD67 expression. Schizophr Res, 66 (2-3). pp. 151-7. ISSN 0920-9964 (Print)

Zink, M., Schmitt, A., Vengeliene, V., Henn, F. A., Spanagel, R. (November 2004) Ethanol induces expression of the glutamate transporters EAAT1 and EAAT2 in organotypic cortical slice cultures. Alcohol Clin Exp Res, 28 (11). pp. 1752-7. ISSN 0145-6008 (Print)0145-6008 (Linking)

Zito, K., Knott, G., Shepherd, G. M., Shenolikar, S., Svoboda, K. (October 2004) Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron, 44 (2). pp. 321-34. ISSN 0896-6273 (Print)

de Stanchina, E., Querido, E., Narita, M., Davuluri, R. V., Pandolfi, P. P., Ferbeyre, G., Lowe, S. W. (February 2004) PML is a direct p53 target that modulates p53 effector functions. Mol Cell, 13 (4). pp. 523-35. ISSN 1097-2765 (Print)