Items where Year is 2017

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Number of items: 289.

A

Abdullah, Nurul Akmaryanti, Moses, John, Han, Li Chen, Storr, Sarah, Ammar, Aula, Martin, Stewart G. (July 2017) Abstract 5210: Differential cytotoxic effects of Piperlongumine analogues and their radiotherapeutic response in breast cancer. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017, 2017 Apr 1-5, Washington, DC..

Abeshouse, A., Adebamowo, C., Adebamowo, S. N., Akbani, R., Akeredolu, T., Ally, A., Anderson, M. L., Anur, P., Appelbaum, E. L., Armenia, J., Auman, J. T., Bailey, M. H., Baker, L., Balasundaram, M., Balu, S., Barthel, F. P., Bartlett, J., Baylin, S. B., Behera, M., Belyaev, D., Bennett, J., Benz, C., Beroukhim, R., Birrer, M., Bocklage, T., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J., Bowlby, R., Boyd, J., Brohl, A. S., Brooks, D., Byers, L., Carlsen, R., Castro, P., Chen, H. W., Cherniack, A. D., Chibon, F., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cibulskis, C., Cooper, L. A. D., Cope, L., Cordes, M. G., Crain, D., Curley, E., Danilova, L., Dao, F., Davis, I. J., Davis, L. E., Defreitas, T., Delman, K., Demchok, J. A., Demetri, G. D., Demicco, E. G., Dhalla, N., Diao, L., Ding, L., DiSaia, P., Dottino, P., Doyle, L. A., Drill, E., Dubina, M., Eschbacher, J., Fedosenko, K., Felau, I., Ferguson, M. L., Frazer, S., Fronick, C. C., Fulidou, V., Fulton, L. A., Fulton, R. S., Gabriel, S. B., Gao, J., Gao, Q., Gardner, J., Gastier-Foster, J. M., Gay, C. M., Gehlenborg, N., Gerken, M., Getz, G., Godwin, A. K., Godwin, E. M., Gordienko, E., Grilley-Olson, J. E., Gutman, D. A., Gutmann, D. H., Hayes, D. N., Hegde, A. M., Heiman, D. I., Heins, Z., Helsel, C., Hepperla, A. J., Higgins, K., Hoadley, K. A., Hobensack, S., Holt, R. A., Hoon, D. B., Hornick, J. L., Hoyle, A. P., Hu, X., Huang, M., Hutter, C. M., Iacocca, M., Ingram, D. R., Ittmann, M., Iype, L., Jefferys, S. R., Jones, K. B., Jones, C. D., Jones, S. J. M., Kalir, T., Karlan, B. Y., Karseladze, A., Kasaian, K., Kim, J., Kundra, R., Kuo, H., Ladanyi, M., Lai, P. H., Laird, P. W., Larsson, E., Lawrence, M. S., Lazar, A. J., Lee, S., Lee, D., Lehmann, K. V., Leraas, K. M., Lester, J., Levine, D. A., Li, I., Lichtenberg, T. M., Lin, P., Liu, J., Liu, W., Liu, E. M., Lolla, L., Lu, Y., Ma, Y., Madan, R., Maglinte, D. T., Magliocco, A., Maki, R. G., Mallery, D., Manikhas, G., Mardis, E. R., Mariamidze, A., Marra, M. A., Martignetti, J. A., Martinez, C., Mayo, M., McLellan, M. D., Meier, S., Meng, S., Meyerson, M., Mieczkowski, P. A., Miller, C. A., Mills, G. B., Moore, R. A., Morris, S., Mose, L. E., Mozgovoy, E., Mungall, A. J., Mungall, K., Nalisnik, M., Naresh, R., Newton, Y., Noble, M. S., Novak, J. E., Ochoa, A., Olvera, N., Owonikoko, T. K., Paklina, O., Parfitt, J., Parker, J. S., Pastore, A., Paulauskis, J., Penny, R., Pereira, E., Perou, C. M., Perou, A. H., Pihl, T., Pollock, R. E., Potapova, O., Radenbaugh, A. J., Ramalingam, S. S., Ramirez, N. C., Rathmell, W. K., Raut, C. P., Riedel, R. F., Reilly, C., Reynolds, S. M., Roach, J., Robertson, A. G., Roszik, J., Rubin, B. P., Sadeghi, S., Saksena, G., Salner, A., Sanchez-Vega, F., Sander, C., Schein, J. E., Schmidt, H. K., Schultz, N., Schumacher, S. E., Sekhon, H., Senbabaoglu, Y., Setdikova, G., Shelton, C., Shelton, T., Shen, R., Shi, Y., Shih, J., Shmulevich, I., Sica, G. L., Simons, J. V., Singer, S., Sipahimalani, P., Skelly, T., Socci, N., Sofia, H. J., Soloway, M. G., Spellman, P., Sun, Q., Swanson, P., Tam, A., Tan, D., Tarnuzzer, R., Thiessen, N., Thompson, E., Thorne, L. B., Tong, P., Torres, K. E., van de Rijn, M., Van Den Berg, D. J., Van Tine, B. A., Veluvolu, U., Verhaak, R., Voet, D., Voronina, O., Wan, Y., Wang, Z., Wang, J., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wilson, R. K., Wise, L., Wong, T., Wong, W., Wrangle, J., Wu, Y., Wyczalkowski, M., Yang, L., Yau, C., Yellapantula, V., Zenklusen, J. C., Zhang, J. J., Zhang, H., Zhang, H., Zmuda, E., The Cancer Genome Atlas Research, Network (2017) Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas. Cell, 171 (4). 950-965.e28. (Public Dataset)

Albrengues, J., Wysocki, R. W., Maiorino, L., Egeblad, M. (November 2017) Re-cyclin' Cell-Cycle Components to Make NETs. Dev Cell, 43 (4). pp. 379-380. ISSN 1534-5807

Amin, J. B., Salussolia, C. L., Chan, K., Regan, M. C., Dai, J., Zhou, H. X., Furukawa, H., Bowen, M. E., Wollmuth, L. P. (June 2017) Divergent roles of a peripheral transmembrane segment in AMPA and NMDA receptors. J Gen Physiol, 149 (6). pp. 661-680. ISSN 0022-1295

Ariazi, E. A., Taylor, J. C., Black, M. A., Nicolas, E., Slifker, M. J., Azzam, D. J., Boyd, J. (2017) A new role for ERα: Silencing via DNA methylation of basal, stem cell, and EMT genes. Molecular Cancer Research, 15 (2). pp. 152-164. ISSN 1541-7786

adams, Tom (December 2017) Newspaper jp2000 example. [Image] (In Press)

B

Balachandran, V. P., Luksza, M., Zhao, J. N., Makarov, V., Moral, J. A., Remark, R., Herbst, B., Askan, G., Bhanot, U., Senbabaoglu, Y., Wells, D. K., Cary, C. I. O., Grbovic-Huezo, O., Attiyeh, M., Medina, B., Zhang, J., Loo, J., Saglimbeni, J., Abu-Akeel, M., Zappasodi, R., Riaz, N., Smoragiewicz, M., Kelley, Z. L., Basturk, O., Gonen, M., Levine, A. J., Allen, P. J., Fearon, D. T., Merad, M., Gnjatic, S., Iacobuzio-Donahue, C. A., Wolchok, J. D., DeMatteo, R. P., Chan, T. A., Greenbaum, B. D., Merghoub, T., Leach, S. D. (November 2017) Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer. Nature, 551 (7681). pp. 512-516. ISSN 0028-0836

Balachandran, Vinod, Luksza, Marta, Zhao, Julia N, Makarov, Vladimir, Moral, John Alec, Remark, Romain, Herbst, Brian, Askan, Gokce, Bhanot, Umeshkumar, Senbabaoglu, Yasin, Wells, Danny, Cary, Charles Ian Ormsby, Grbovic-Huezo, Olivera, Attiyeh, Marc, Medina, Benjamin, Zhang, Jennifer, Loo, Jennifer, Saglimbeni, Joseph, Abu-Akeel, Mohsen, Zappasodi, Roberta, Riaz, Nadeem, Smoragiewicz, Martin, Basturk, Olca, Gonen, Mithat, Levine, Arnold J, Allen, Peter J, Fearon, Douglas T, Merad, Miriam, Gnjatic, Sacha, Iacobuzio-Donahue, Christine, Wolchok, Jedd, DeMatteo, Ronald, Greenbaum, Benjamin, Merghoub, Taha, Leach, Steven (November 2017) Identification of unique neoantigen qualities in long-term pancreatic cancer survivors. In: UNSPECIFIED.

Balasooriya, G., Goschorska, M., Piddini, E., Rawlins, E. L. (May 2017) FGFR2 is required for airway basal cell self-renewal and terminal differentiation. Development, 144 (9). pp. 1600-1606. ISSN 0950-1991

Balkunde, R., Kitagawa, M., Xu, X. M., Wang, J., Jackson, D. (April 2017) SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J, 90 (3). pp. 435-446. ISSN 0960-7412

Ballouz, S., Gillis, J. (October 2017) DISTINGUISHING BIOLOGICAL FROM TECHNOLOGICAL SIGNALS IN THE FUNCTIONAL INTERPRETATION OF NEUROPSYCHIATRIC DISEASE GENES. European Neuropsychopharmacology, 27 (Supple). Abstract 31; S223-S224. ISSN 0924-977X

Ballouz, S., Gillis, J. (July 2017) Strength of functional signature correlates with effect size in autism. Genome Med, 9 (1). p. 64. ISSN 1756-994x

Ballouz, S., Weber, M., Pavlidis, P., Gillis, J. (February 2017) EGAD: ultra-fast functional analysis of gene networks. Bioinformatics, 33 (4). pp. 612-614. ISSN 1367-4803

Banerjee, Arkarup, Long, Michael A (May 2017) Ready, Steady, Go! Imaging Cortical Activity during Movement Planning and Executio. Neuron, 94 (4). pp. 698-700. ISSN 0896-6273

Banerjee, Arkarup, Marbach, F., Anselmi, Francesca, Koh, Matthew S, Davis, Martin B, Garcia da Silva, P., Delevich, K., Oyibo, Hassana K., Gupta, Priyanka, Li, Bo, Albeanu, Dinu F (July 2017) Long-range interactions between short axon cells and external tufted cells gate glomerular output in the mouse olfactory bulb. Neuron, 87 (1). pp. 193-207. ISSN 0896-6273

Barbieri, I., Tzelepis, K., Pandolfini, L., Shi, J., Millan-Zambrano, G., Robson, S. C., Aspris, D., Migliori, V., Bannister, A. J., Han, N., De Braekeleer, E., Ponstingl, H., Hendrick, A., Vakoc, C. R., Vassiliou, G. S., Kouzarides, T. (December 2017) Promoter-bound METTL3 maintains myeloid leukaemia by m(6)A-dependent translation control. Nature, 552 (7683). pp. 126-131. ISSN 0028-0836

Barone, L., Williams, J., Micklos, D. (October 2017) Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators. PLoS Comput Biol, 13 (10). e1005755. ISSN 1553-734x

Barone, Lindsay, Williams, Jason, Micklos, David (February 2017) Unmet Needs for Analyzing Biological Big Data: A Survey of 704 NSF Principal Investigators. BioRxiv. (Unpublished)

Baslan, T., Hicks, J. (August 2017) Unravelling biology and shifting paradigms in cancer with single-cell sequencing. Nat Rev Cancer, 17 (9). pp. 557-569. ISSN 1474-175x

Batut, P. J., Gingeras, T. R. (December 2017) Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife, 6. ISSN 2050-084x

Berstein, Y., McCarthy, S., Kramer, M., Zandi, P., Goes, F., Potash, J., McCombie, R. (October 2017) RARE VARIANT DETECTION IN COMPLEX DISORDERS USING THE BIRTHDAY MODEL. European Neuropsychopharmacology, 27 (Supple). S367-S368, Meeting Abstract 2. ISSN 0924-977X

Beshel, J., Dubnau, J., Zhong, Y. (January 2017) A Leptin Analog Locally Produced in the Brain Acts via a Conserved Neural Circuit to Modulate Obesity-Linked Behaviors in Drosophila. Cell Metab, 25 (1). pp. 208-217. ISSN 1932-7420 (Electronic)1550-4131 (Linking)

Beyaz, S., Kim, J. H., Pinello, L., Xifaras, M. E., Hu, Y., Huang, J., Kerenyi, M. A., Das, P. P., Barnitz, R. A., Herault, A., Dogum, R., Haining, W. N., Yilmaz, O. H., Passegue, E., Yuan, G. C., Orkin, S. H., Winau, F. (February 2017) The histone demethylase UTX regulates the lineage-specific epigenetic program of invariant natural killer T cells. Nat Immunol, 18 (2). pp. 184-195. ISSN 1529-2916 (Electronic)1529-2908 (Linking)

Bhattacharjee, S., Nandi, S. (October 2017) DNA damage response and cancer therapeutics through the lens of the Fanconi Anemia DNA repair pathway. Cell Commun Signal, 15 (1). p. 41. ISSN 1478-811x

Bhattacharjee, S., Nandi, S. (December 2017) Synthetic lethality in DNA repair network: A novel avenue in targeted cancer therapy and combination therapeutics. IUBMB Life, 69 (12). pp. 929-937. ISSN 1521-6543

Bienvenu, François, Akcay, Erol, Legendre, Stéphane, McCandlish, David (June 2017) The genealogical decomposition of a matrix population model with applications to the aggregation of stages. Theoretical Population Biology, 115. pp. 69-80.

Biffi, G., Tuveson, D. A. (February 2017) Cancer: Double trouble for tumours. Nature, 542 (7639). pp. 34-35. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Borniger, J. C., Cisse, Y. M., Nelson, R. J., Martin, L.B. (2017) Seasonal Variation in Stress Responses. In: Stress: Neuroendocrinology and Neurobiology. Chapter 41, 2 . Academic Press, pp. 411-419. ISBN 978-0-12-802175-0

Borniger, J. C., Don, R. F., Zhang, N., Boyd, R. T., Nelson, R. J. (September 2017) Enduring effects of perinatal nicotine exposure on murine sleep in adulthood. Am J Physiol Regul Integr Comp Physiol, 313 (3). R280-R289. ISSN 1522-1490 (Electronic)0363-6119 (Linking)

Borniger, J. C., Nelson, R. J. (January 2017) Photoperiodic regulation of behavior: Peromyscus as a model system. Semin Cell Dev Biol, 61. pp. 82-91. ISSN 1096-3634 (Electronic)1084-9521 (Linking)

Borniger, J. C., Walker Ii, W. H., Gaudier-Diaz, M. M., Stegman, C. J., Zhang, N., Hollyfield, J. L., Nelson, R. J., DeVries, A. C. (January 2017) Time-of-Day Dictates Transcriptional Inflammatory Responses to Cytotoxic Chemotherapy. Sci Rep, 7. p. 41220. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Borniger, Jeremy C., Cisse, Yasmine-Marie, Surbhi, Nelson, R. J. (June 2017) Reciprocal Regulation of Circadian Rhythms and Immune Function. Current Sleep Medicine Reports, 3 (2). pp. 93-103.

Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M. (October 2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171 (2). 287-304.e15. ISSN 0092-8674

Breschi, A., Gingeras, T. R., Guigo, R. (July 2017) Comparative transcriptomics in human and mouse. Nat Rev Genet, 18 (7). pp. 425-440. ISSN 1471-0056

Bronstein, R., Kyle, J., Abraham, A. B., Tsirka, S. E. (May 2017) Neurogenic to Gliogenic Fate Transition Perturbed by Loss of HMGB2. Front Mol Neurosci, 10. p. 153. ISSN 1662-5099

Brown, Fiona C, Cifani, Paolo, Drill, Esther, He, Jie, Still, Eric, Zhong, Shan, Balasubramanian, Sohail, Pavlick, Dean, Yilmazel, Bahar, Knapp, Kristina M, Alonzo, Todd A, Meshinchi, Soheil, Stone, Richard M, Kornblau, Steven M, Marcucci, Guido, Gamis, Alan S, Byrd, John C, Gonen, Mithat, Levine, Ross L, Kentsis, Alex (January 2017) Genomics of primary chemoresistance and remission induction failure in paediatric and adult acute myeloid leukaemia. British Journal of Haematology, 176 (1). pp. 86-91. ISSN 0007-1048

Buscaglia, Jonathan M., Bucobo, Juan Carlos, Tiriac, Herve, Tzimas, Demetrios, Grewal, Suman, LaComb, Joseph, Rowehl, Leahana, Nagula, Satish, Wu, Maoxin, Kim, Joseph, Sasson, Aaron, Li, Ellen, Young, Candice M., Tuveson, David A. (May 2017) 111 Successful Creation of Pancreatic Cancer Organoids By Means of Eus-Guided Fine-Needle Biopsy (EUS-FNB) for Personalized Cancer Treatment. Gastrointestinal Endoscopy, 85 (5, Sup). AB50-AB51. ISSN 0016-5107

C

Calvert, A. E., Chalastanis, A., Wu, Y., Hurley, L. A., Kouri, F. M., Bi, Y., Kachman, M., May, J. L., Bartom, E., Hua, Y., Mishra, R. K., Schiltz, G. E., Dubrovskyi, O., Mazar, A. P., Peter, M. E., Zheng, H., James, C. D., Burant, C. F., Chandel, N. S., Davuluri, R. V., Horbinski, C., Stegh, A. H. (May 2017) Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation. Cell Rep, 19 (9). pp. 1858-1873.

Cancer Genome Atlas ResearchNetwork, (November 2017) Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas. Cell, 171 (4). 950-965.e28. ISSN 0092-8674

Cassidy, Michael R, Gholami, Sepideh, Strong, Vivian E (April 2017) Minimally Invasive Surgery: The Emerging Role in Gastric Cancer. Surgical Oncology Clinics of North America, 26 (2). pp. 193-212. ISSN 1055-3207

Cazakoff, B. N. (April 2017) State and Learning Dependent Changes in Olfactory Granule Cells. PhD thesis, Cold Spring Harbor Laboratory.

Chalk, M., Masset, P., Gutkin, B., Deneve, S. (June 2017) Sensory noise predicts divisive reshaping of receptive fields. PLoS Comput Biol, 13 (6). e1005582. ISSN 1553-734x

Chang, An-Yun, Castel, Stephane E., Ernst, Evan, Kim, Hyun Soo, Martienssen, Robert A. (June 2017) The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports, 19 (12). pp. 2477-2489. ISSN 2211-1247

Chen, Yuncong, McElvain, Lauren, Tolpygo, Alex, Ferrante, Daniel, Karten, Harvey, Mitra, Partha, Kleinfeld, David, Freund, Yoav (February 2017) The Active Atlas: Combining 3D Anatomical Models with Texture Detectors. arXiv. (Submitted)

Chen, M., Nowak, D. G., Narula, N., Robinson, B., Watrud, K., Ambrico, A., Herzka, T. M., Zeeman, M. E., Minderer, M., Zheng, W., Ebbesen, S. H., Plafker, K. S., Stahlhut, C., Wang, V. M., Wills, L., Nasar, A., Castillo-Martin, M., Cordon-Cardo, C., Wilkinson, J. E., Powers, S., Sordella, R., Altorki, N. K., Mittal, V., Stiles, B. M., Plafker, S. M., Trotman, L. C. (March 2017) The nuclear transport receptor Importin-11 is a tumor suppressor that maintains PTEN protein. J Cell Biol, 216 (3). pp. 641-656. ISSN 0021-9525

Chen, Y., McElvain, L., Tolpygo, A., Ferrante, D., Karten, H., Mitra, P., Kleinfeld, D., Freund, Y. (2017) The active atlas: Combining 3D anatomical models with texture detectors. Lecture Notes in Computer Science, 10433. pp. 3-11. ISSN 978-331966181-0

Cheng, Y., Xu, J., Arnone, D., Nie, B., Yu, H., Jiang, H., Bai, Y., Luo, C., Campbell, R. A., Shan, B., Xu, L., Xu, X. (February 2017) Resting-state brain alteration after a single dose of SSRI administration predicts 8-week remission of patients with major depressive disorder. Psychol Med, 47 (3). pp. 438-450. ISSN 1469-8978 (Electronic)0033-2917 (Linking)

Chio, I. I. C., Jafarnejad, S. M., Ponz-Sarvise, M., Park, Y., Rivera, K., Palm, W., Ohlund, D., Hammell, M., Crawford, H., Schmidt, E., Thompson, C., Pappin, D., Sonenberg, N., Tuveson, D. (March 2017) NRF2 promotes tumor maintenance by modulating mRNA translation in pancreatic cancer. Cancer Research, 77 (Supple). ISSN 0008-54721538-7445

Chio, II, Tuveson, D. A. (January 2017) ROS in translation: Chink in the armor. Cell Cycle, 16 (4). pp. 297-298. ISSN 1551-4005

Chio, Iok In Christine, Tuveson, David A. (May 2017) ROS in Cancer: The Burning Question. Trends in Molecular Medicine, 23 (5). pp. 411-429. ISSN 1471-4914

Chomet, Paul, Martienssen, Rob (September 2017) Barbara McClintock’s Final Years as Nobelist and Mentor: A Memoir. Cell, 170 (6). pp. 1049-1054. ISSN 0092-8674

Cifani, Paolo, Kentsis, Alex (November 2017) High Sensitivity Quantitative Proteomics Using Automated Multidimensional Nano-flow Chromatography and Accumulated Ion Monitoring on Quadrupole-Orbitrap-Linear Ion Trap Mass Spectrometer. Molecular and Cellular Proteomics, 16 (11). pp. 2006-2016. ISSN 1535-9476

Cifani, Paolo, Kentsis, Alex (January 2017) Towards comprehensive and quantitative proteomics for diagnosis and therapy of human disease. Proteomics, 17 (1-2). p. 1600079. ISSN 1615-9853

Cifani, Paolo, Shakiba, Mojdeh, Chhangawala, Sagar, Kentsis, Alex (December 2017) ProteoModlR for functional proteomic analysis. BMC Bioinformatics, 18 (1). ISSN 1471-2105

Cluntun, A. A., Lukey, M. J., Cerione, R. A., Locasale, J. W. (March 2017) Glutamine Metabolism in Cancer: Understanding the Heterogeneity. Trends Cancer, 3 (3). pp. 169-180. ISSN 2405-8033

Conn, A., Pedmale, U. V., Chory, J., Navlakha, S. (July 2017) High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles. Cell Syst, 5 (1). 53-62.e3. ISSN 2405-4712 (Print)2405-4712

Connell, C. M., Raby, S., Beh, I., Flint, T., Williams, E., Fearon, D. T., Jodrell, D. I., Janowitz, T. (July 2017) Cancer immunotherapy trial registrations increase exponentially but chronic immunosuppressive glucocorticoid therapy may compromise outcomes. Ann Oncol, 28 (7). pp. 1678-1679. ISSN 0923-7534

Corrie, P., Qian, W., Gopinathan, A., Williams, M., Brais, R., Valle, J. W., Basu, B., Falk, S., Iwuji, C., Wasan, H., Palmer, D., Scott-Brown, M., Wadsley, J., Arif, S., Bax, L., Bundi, P., Skells, R., Neesse, A., Tuveson, D., Jodrell, D. (September 2017) Strong tumour cytidine deaminase (CDA) staining predicts for improved survival associated with sequential nab-Paclitaxel (nabP) and gemcitabine (GEM) chemotherapy as first line treatment of patients (pts) with metastatic pancreatic adenocarcinoma (mPDAC). Annals of Oncology, 28 (Supple). 73P. ISSN 0923-7534

Crow, M., Paul, A., Huang, J., Gillis, J. (October 2017) USING SINGLE CELL RNA-SEQ TO EXPLORE CELL-TYPE SPECIFIC CO-EXPRESSION OF NEUROPSYCHIATRIC DISEASE GENES. European Neuropsychopharmacology, 27. abstract S350-S350. ISSN 0924-977X

Cumming, G. P., French, T., Hogg, J., McKendrick, D., Gilstad, H., Molik, D., Luciano, J. S. (2017) Trust and provenance in communication to ehealth consumers. In: The Digitization of Healthcare: New Challenges and Opportunities. UNSPECIFIED, pp. 189-203. ISBN 9781349951734 (ISBN); 9781349951727 (ISBN)

D

D'Rozario, J, Suliman, M, Knoblich, K, Roberts, D, De Campos, Dias J, Astarita, J, Dutton, E, Mansell, A, Denton, A, Fearon, D, Withers, D, Barone, F, Turley, S, Boyd, R, Heng, T, Fletcher, A (May 2017) Fibroblastic reticular cells facilitate myeloid cellular crosstalk via the provision of FRC derived growth and chemotactic factors. In: UNSPECIFIED.

Daneshjou, R., Wang, Y., Bromberg, Y., Bovo, S., Martelli, P. L., Babbi, G., Lena, P. D., Casadio, R., Edwards, M., Gifford, D., Jones, D. T., Sundaram, L., Bhat, R., Li, X., Pal, L. R., Kundu, K., Yin, Y., Moult, J., Jiang, Y., Pejaver, V., Pagel, K. A., Li, B., Mooney, S. D., Radivojac, P., Shah, S., Carraro, M., Gasparini, A., Leonardi, E., Giollo, M., Ferrari, C., Tosatto, S. C. E., Bachar, E., Azaria, J. R., Ofran, Y., Unger, R., Niroula, A., Vihinen, M., Chang, B., Wang, M. H., Franke, A., Petersen, B. S., Pirooznia, M., Zandi, P., McCombie, R., Potash, J. B., Altman, R., Klein, T. E., Hoskins, R., Repo, S., Brenner, S. E., Morgan, A. A. (September 2017) Working towards precision medicine: predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Hum Mutat, 38 (9). pp. 1182-1192. ISSN 1059-7794

Darrow, S. M., Hirschtritt, M. E., Davis, L. K., Illmann, C., Osiecki, L., Grados, M., Sandor, P., Dion, Y., King, R., Pauls, D., Budman, C. L., Cath, D. C., Greenberg, E., Lyon, G. J., Yu, D., McGrath, L. M., McMahon, W. M., Lee, P. C., Delucchi, K. L., Scharf, J. M., Mathews, C. A. (April 2017) Identification of Two Heritable Cross-Disorder Endophenotypes for Tourette Syndrome. Am J Psychiatry, 174 (4). pp. 387-396. ISSN 1535-7228 (Electronic)0002-953X (Linking)

Darrow, Sabrina M., Grados, Marco, Sandor, Paul, Hirschtritt, Matthew E., Illmann, Cornelia, Osiecki, Lisa, Dion, Yves, King, Robert, Pauls, David, Budman, Cathy L., Cath, Danielle C., Greenberg, Erica, Lyon, Gholson J., McMahon, William M., Lee, Paul C., Delucchi, Kevin L., Scharf, Jeremiah M., Mathews, Carol A. (July 2017) Autism Spectrum Symptoms in a Tourette Syndrome Sample. Journal of the American Academy of Child & Adolescent Psychiatry, 56 (7). pp. 610-617. ISSN 0890-8567

Dasgupta, S., Stevens, C. F., Navlakha, S. (November 2017) A neural algorithm for a fundamental computing problem. Science, 358 (6364). pp. 793-796. ISSN 0036-8075 (Public Dataset)

Deagle, Rebecca C, Wee, Tse-Luen Erika, Brown, Claire M (August 2017) Reproducibility in light microscopy: Maintenance, standards and SOPs. International Journal of Biochemistry and Cell Biology, 89. pp. 120-124. ISSN 1357-2725

Delas, M. J., Hannon, G. J. (July 2017) lncRNAs in development and disease: from functions to mechanisms. Open Biol, 7 (7). ISSN 2046-2441

Delas, M. J., Sabin, L. R., Dolzhenko, E., Knott, S. R., Munera Maravilla, E., Jackson, B. T., Wild, S. A., Kovacevic, T., Stork, E. M., Zhou, M., Erard, N., Lee, E., Kelley, D. R., Roth, M., Barbosa, I. S. A., Zuber, J., Rinn, J. L., Smith, A. D., Hannon, G. J. (September 2017) lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife, 6. e25607. ISSN 2050-084x

Delas Vives, M.J. (March 2017) Role of long noncoding RNAs in hematopoiesis. PhD thesis, Cold Spring Harbor Laboratory.

Demetri, G. D., Schoffski, P., Grignani, G., Blay, J. Y., Maki, R. G., Van Tine, B. A., Alcindor, T., Jones, R. L., D'Adamo, D. R., Guo, M., Chawla, S. (October 2017) Activity of Eribulin in Patients With Advanced Liposarcoma Demonstrated in a Subgroup Analysis From a Randomized Phase III Study of Eribulin Versus Dacarbazine. J Clin Oncol, 35 (30). pp. 3433-3439. ISSN 0732-183x

Demicco, E. G., Wagner, M. J., Maki, R. G., Gupta, V., Iofin, I., Lazar, A. J., Wang, W. L. (October 2017) Risk assessment in solitary fibrous tumors: validation and refinement of a risk stratification model. Mod Pathol, 30 (10). pp. 1433-42. ISSN 0893-3952

Diermeier, S. D., Spector, D. L. (August 2017) Antisense Oligonucleotide-mediated Knockdown in Mammary Tumor Organoids. Bio Protoc, 7 (16). ISSN 2331-8325 (Print)2331-8325

Doktor, T. K., Hua, Y., Andersen, H. S., Broner, S., Liu, Y. H., Wieckowska, A., Dembic, M., Bruun, G. H., Krainer, A. R., Andresen, B. S. (January 2017) RNA-sequencing of a mouse-model of spinal muscular atrophy reveals tissue-wide changes in splicing of U12-dependent introns. Nucleic Acids Res, 45 (1). pp. 395-416. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Dorfel, M. J., Fang, H., Crain, J., Klingener, M., Weiser, J., Lyon, G. J. (January 2017) Proteomic and genomic characterization of a yeast model for Ogden syndrome. Yeast, 34 (1). pp. 19-37. ISSN 1097-0061 (Electronic)0749-503X (Linking)

Dubois, M., Claeys, H., den Broeck, L. V., Inze, D. (February 2017) Time of day determines Arabidopsis transcriptome and growth dynamics under mild drought. Plant Cell Environ, 40 (2). pp. 180-189. ISSN 1365-3040 (Electronic)0140-7791 (Linking)

Dukler, N., Booth, G. T., Huang, Y. F., Tippens, N., Waters, C. T., Danko, C. G., Lis, J. T., Siepel, A. (November 2017) Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol. Genome Res, 27 (11). pp. 1816-1829. ISSN 1088-9051

Dukler, Noah, Booth, Gregory, Huang, Yi-Fei, Tippens, Nathaniel, Danko, Charles, Lis, John, Siepel, Adam (March 2017) Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol. BioRxiv. (Unpublished)

Dunn, Timothy W., Koo, Peter K. (2017) Inferring Functional Neural Connectivity with Deep Residual Convolutional Networks. bioRxiv. p. 141010. (Unpublished)

E

Ecker, Joseph R., Geschwind, Daniel H., Kriegstein, Arnold R., Ngai, John, Osten, Pavel, Polioudakis, Damon, Regev, Aviv, Sestan, Nenad, Wickersham, Ian R., Zeng, Hongkui (November 2017) The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas. Neuron, 96 (3). pp. 542-557. ISSN 0896-6273

Elegheert, Jonathan, Cvetkovska, Vedrana, Clayton, Amber J., Heroven, Christina, Vennekens, Kristel M., Smukowski, Samuel N., Regan, Michael C., Jia, Wanyi, Smith, Alexandra C., Furukawa, Hiro, Savas, Jeffrey N., de Wit, Joris, Begbie, Jo, Craig, Ann Marie, Aricescu, A. Radu (August 2017) Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron, 95 (4). 896-913.e10. ISSN 0896-6273 (Public Dataset)

Elegheert, Jonathan, Cvetkovska, Vedrana, Clayton, Amber J, Heroven, Christina, Vennekens, Kristel M, Smukowski, Samuel N, Regan, Michael C, Jia, Wanyi, Smith, Alexandra C, Furukawa, Hiro, Savas, Jeffrey N, de Wit, Joris, Begbie, Jo, Craig, Ann Marie, Aricescu, A Radu (September 2017) Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron, 96 (1). pp. 242-244. ISSN 0896-6273

Elkayam, E., Parmar, R., Brown, C. R., Willoughby, J. L., Theile, C. S., Manoharan, M., Joshua-Tor, L. (April 2017) siRNA carrying an (E)-vinylphosphonate moiety at the 5' end of the guide strand augments gene silencing by enhanced binding to human Argonaute-2. Nucleic Acids Res, 45 (6). pp. 3528-3536. ISSN 1362-4962 (Electronic)0305-1048 (Linking) (Public Dataset)

Elkayam, Elad, Faehnle, Christopher R., Morales, Marjorie, Sun, Jingchuan, Li, Huilin, Joshua-Tor, Leemor (August 2017) Multivalent Recruitment of Human Argonaute by GW182. Molecular Cell, 67 (4). pp. 646-658. ISSN 1097-2765 (Public Dataset)

English, W. R., Lunt, S. J., Fisher, M., Lefley, D. V., Dhingra, M., Lee, Y. C., Bingham, K., Hurrell, J. E., Lyons, S. K., Kanthou, C., Tozer, G. M. (May 2017) Differential Expression of VEGFA Isoforms Regulates Metastasis and Response to Anti-VEGFA Therapy in Sarcoma. Cancer Res, 77 (10). pp. 2633-2646. ISSN 1538-7445 (Electronic)0008-5472 (Linking)

Erard, Nicolas, Knott, Simon R. V., Hannon, Gregory J. (2017) A CRISPR Resource for Individual, Combinatorial, or Multiplexed Gene Knockout. Molecular Cell, 67 (2). 348-354.e3. ISSN 1097-2765

Eritja, N., Chen, B. J., Rodríguez-Barrueco, R., Santacana, M., Gatius, S., Vidal, A., Martí, M. D., Ponce, J., Bergadà, L., Yeramian, A., Encinas, M., Ribera, J., Reventós, J., Boyd, J., Villanueva, A., Matias-Guiu, X., Dolcet, X., Llobet-Navàs, D. (2017) Autophagy orchestrates adaptive responses to targeted therapy in endometrial cancer. Autophagy, 13 (3). pp. 608-624. ISSN 15548627 (ISSN) (Public Dataset)

Eroh, G. D., Clayton, F. C., Florell, S. R., Cassidy, P. B., Chirife, A., Maron, C. F., Valenzuela, L. O., Campbell, M. S., Seger, J., Rowntree, V. J., Leachman, S. A. (February 2017) Cellular and ultrastructural characterization of the grey-morph phenotype in southern right whales (Eubalaena australis). PLoS One, 12 (2). e0171449. ISSN 1932-6203

F

Faehnle, C. R., Walleshauser, J., Joshua-Tor, L. (August 2017) Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis. Nat Struct Mol Biol, 24 (8). pp. 658-665. ISSN 1545-9985 (Public Dataset)

Fan, G., Nicholas, N. (November 2017) FER mediated HGF-independent regulation of HGFR/MET activates RAC1-PAK1 pathway to potentiate metastasis in ovarian cancer. Small GTPases. ISSN 2154-1248

Fang, H., Wu, Y., Yang, H., Yoon, M., Jimenez-Barron, L. T., Mittelman, D., Robison, R., Wang, K., Lyon, G. J. (February 2017) Whole genome sequencing of one complex pedigree illustrates challenges with genomic medicine. BMC Med Genomics, 10 (1). p. 10. ISSN 1755-8794

Fearon, D. T. (April 2017) Explaining the Paucity of Intratumoral T Cells: A Construction Out of Known Entities. Cold Spring Harb Symp Quant Biol, 81. pp. 219-226. ISSN 0091-7451

Fearon, D. T. (March 2017) Immune-Suppressing Cellular Elements of the Tumor Microenvironment. Annual Review of Cancer Biology, 1 (1). pp. 241-255. ISSN 2472-3428

Feigin, M. E., Garvin, T., Bailey, P., Waddell, N., Chang, D. K., Kelley, D. R., Shuai, S., Gallinger, S., McPherson, J. D., Grimmond, S. M., Khurana, E., Stein, L. D., Biankin, A. V., Schatz, M. C., Tuveson, D. A. (June 2017) Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma. Nat Genet, 49 (6). pp. 825-833. ISSN 1061-4036

Feigin, M. E., Tuveson, D. A. (April 2017) Organoid models to interrogate GPCR regulation of pancreatic tumorigenesis. Faseb Journal, 31 (Supple). Meeting Abstract: lb524 . ISSN 0892-6638

Fessas, P., Lee, H., Ikemizu, S., Janowitz, T. (April 2017) A molecular and preclinical comparison of the PD-1-targeted T-cell checkpoint inhibitors nivolumab and pembrolizumab. Semin Oncol, 44 (2). pp. 136-140. ISSN 0093-7754

Flint, Thomas R., Fearon, Douglas T., Janowitz, Tobias (May 2017) Connecting the Metabolic and Immune Responses to Cancer. Trends in Molecular Medicine, 23 (5). pp. 451-464. ISSN 1471-4914

Fontanals-Cirera, B., Hasson, D., Vardabasso, C., Di Micco, R., Agrawal, P., Chowdhury, A., Gantz, M., de Pablos-Aragoneses, A., Morgenstern, A., Wu, P., Filipescu, D., Valle-Garcia, D., Darvishian, F., Roe, J. S., Davies, M. A., Vakoc, C. R., Hernando, E., Bernstein, E. (November 2017) Harnessing BET Inhibitor Sensitivity Reveals AMIGO2 as a Melanoma Survival Gene. Mol Cell, 68 (4). 731-744.e9. ISSN 1097-2765

Frangeul, Laura, Kehayas, Vassilis, Sanchez-Mut, Jose V, Fièvre, Sabine, Krishna-K, K, Pouchelon, Gabrielle, Telley, Ludovic, Bellone, Camilla, Holtmaat, Anthony, Gräff, Johannes, Macklis, Jeffrey D, Jabaudon, Denis (December 2017) Input-dependent regulation of excitability controls dendritic maturation in somatosensory thalamocortical neurons. Nature Communications, 8 (1). p. 2015. ISSN 2041-1723

Frey, W. D., Chaudhry, A., Slepicka, P. F., Ouellette, A. M., Kirberger, S. E., Pomerantz, W. C. K., Hannon, G. J., Dos Santos, C. O. (July 2017) BPTF Maintains Chromatin Accessibility and the Self-Renewal Capacity of Mammary Gland Stem Cells. Stem Cell Reports, 9 (1). pp. 23-31. ISSN 2213-6711 (Public Dataset)

Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., Buell, C. R., Bucksch, A., Busch, W., Demura, T., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Falter-Braun, P., Gehan, M. A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R. J. C., Megraw, M., Meyers, B. C., Murray, J. A. H., Provart, N. J., Rhee, S., Smith, R., Spalding, E. P., Taylor, C., Teal, T. K., Torii, K. U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., Brady, S. M. (December 2017) The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiol, 175 (4). pp. 1499-1509. ISSN 0032-0889

Furukawa, H (August 2017) Structure and pharmacology of NMDA receptors. In: ISN-ESN Meeting.

G

Gholami, Sepideh, Cassidy, Michael R, Kirane, Amanda, Kuk, Deborah, Zanchelli, Bhumika, Antonescu, Christina R, Singer, Samuel, Brennan, Murray (December 2017) Size and Location are the Most Important Risk Factors for Malignant Behavior in Resected Solitary Fibrous Tumors. Annals of Surgical Oncology, 24 (13). pp. 3865-3871. ISSN 1068-9265

Giovannucci, A., Badura, A., Deverett, B., Najafi, F., Pereira, T. D., Gao, Z. Y., Ozden, I., Kloth, A. D., Pnevmatikakis, E., Paninski, L., De Zeeuw, C. I., Medina, J. F., Wang, S. S. H. (May 2017) Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning. Nature Neuroscience, 20 (5). pp. 727-734. ISSN 1097-6256

Giovannucci, A., Friedrich, J., Kaufman, M., Churchland, A. K., Chklovskii, D., Paninski, L., Pnevmatikakis, E. A. (December 2017) OnACID: Online analysis of calcium imaging data in real time. 31st Annual Conference on Neural Information Processing Systems, NIPS 2017;, 2017-D. pp. 2382-2392. ISSN 10495258

Giralt, A., Brito, V., Chevy, Q., Simonnet, C., Otsu, Y., Cifuentes-Diaz, C., de Pins, B., Coura, R., Alberch, J., Gines, S., Poncer, J. C., Girault, J. A. (May 2017) Pyk2 modulates hippocampal excitatory synapses and contributes to cognitive deficits in a Huntington's disease model. Nature Communications, 8. p. 15592. ISSN 2041-1723

Goes, F., Pirooznia, M., Parla, J., Melissa, K., Monson, E., Willour, V., Boenkhe, M., Scotts, L., Stahl, E., Purcell, S., Sklar, P., Zandi, P., McCombie, W., Potash, J. (October 2017) EXOME SEQUENCING OF BIPOLAR DISORDER: FAMILY AND CASE-CONTROL RESULTS SHOW OVERLAP WITH GENES IMPLICATED IN AUTISM AND SCHIZOPHRENIA. European Neuropsychopharmacology, 27 (Supple). Abstract 17; S148-S148. ISSN 0924-977X

Goodwin, S., Wappel, R., McCombie, W. R. (July 2017) 1D Genome Sequencing on the Oxford Nanopore MinION. Curr Protoc Hum Genet, 94. 18.11.1-18.11.14. ISSN 1934-8258

Gronchi, A., Maki, R. G., Jones, R. L. (January 2017) Treatment of soft tissue sarcoma: a focus on earlier stages. Future Oncol, 13 (1s). pp. 13-21. ISSN 1744-8301 (Electronic)1479-6694 (Linking)

Grossniklaus, Ueli (December 2017) Polyspermy produces tri-parental seeds in maize. Current Biology, 27 (24). R1300-R1302. ISSN 0960-9822

Gurung, Prajwal, Fan, Gaofeng, Lukens, John R., Vogel, Peter, Tonks, Nicholas K., Kanneganti, Thirumala-Devi (April 2017) Tyrosine Kinase SYK Licenses MyD88 Adaptor Protein to Instigate IL-1α-Mediated Inflammatory Disease. Immunity, 46 (4). pp. 635-648. ISSN 1074-7613

H

Haas, Brian, Dobin, Alex, Stransky, Nicolas, Li, Bo, Yang, Xiao, Tickle, Timothy, Bankapur, Asma, Ganote, Carrie, Doak, Thomas, Pochet, Nathalie, Sun, Jing, Wu, Catherine, Gingeras, Thomas, Regev, Aviv (March 2017) STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq. BioRxiv. (Unpublished)

Haber, A. L., Biton, M., Rogel, N., Herbst, R. H., Shekhar, K., Smillie, C., Burgin, G., Delorey, T. M., Howitt, M. R., Katz, Y., Tirosh, I., Beyaz, S., Dionne, D., Zhang, M., Raychowdhury, R., Garrett, W. S., Rozenblatt-Rosen, O., Shi, H. N., Yilmaz, O., Xavier, R. J., Regev, A. (November 2017) A single-cell survey of the small intestinal epithelium. Nature, 551 (7680). pp. 333-339. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Han, D., Rodriguez-Bravo, V., Charytonowicz, E., Demicco, E., Domingo-Domenech, J., Maki, R. G., Cordon-Cardo, C. (May 2017) Targeting sarcoma tumor-initiating cells through differentiation therapy. Stem Cell Res, 21. pp. 117-123. ISSN 1873-5061

He, H., Li, Y., Dong, Q., Chang, A. Y., Gao, F., Chi, Z., Su, M., Zhang, F., Ban, H., Martienssen, R., Chen, Y. H., Li, F. (November 2017) Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex. Proc Natl Acad Sci U S A. ISSN 0027-8424

Heath, L. S., Bravo, H. C., Caccamo, M., Schatz, M. (March 2017) Bioinformatics of DNA. Proceedings of the Ieee, 105 (3). pp. 419-421. ISSN 0018-9219

Heinrich, M., Rankin, C., Blanke, C. D., Demetri, G. D., Borden, E. C., Ryan, C. W., von Mehren, M., Blackstein, M. E., Priebat, D. A., Tap, W. D., Maki, R. G., Corless, C. L., Fletcher, J. A., Owzar, K., Crowley, J. J., Benjamin, R. S., Baker, L. H. (July 2017) Correlation of Long-term Results of Imatinib in Advanced Gastrointestinal Stromal Tumors With Next-Generation Sequencing Results: Analysis of Phase 3 SWOG Intergroup Trial S0033. JAMA Oncol, 3 (7). pp. 944-952. ISSN 2374-2437

Hensley, M. L., Patel, S. R., von Mehren, M., Ganjoo, K., Jones, R. L., Staddon, A., Rushing, D., Milhem, M., Monk, B., Wang, G., McCarthy, S., Knoblauch, R. E., Parekh, T. V., Maki, R. G., Demetri, G. D. (September 2017) Efficacy and safety of trabectedin or dacarbazine in patients with advanced uterine leiomyosarcoma after failure of anthracycline-based chemotherapy: Subgroup analysis of a phase 3, randomized clinical trial. Gynecol Oncol, 146 (3). pp. 531-537. ISSN 0090-8258

Hicks, C., Ramani, R., Sartor, O., Bhalla, R., Miele, L., Dlamini, Z., Gumede, N. (March 2017) An integrative genomics approach for associating genome-wide association studies information with localized and metastatic prostate cancer phenotypes. Biomarker Insights, 12.

Hirschtritt, M. E., Darrow, S. M., Illmann, C., Osiecki, L., Grados, M., Sandor, P., Dion, Y., King, R. A., Pauls, D., Budman, C. L., Cath, D. C., Greenberg, E., Lyon, G. J., Yu, D., McGrath, L. M., McMahon, W. M., Lee, P. C., Delucchi, K. L., Scharf, J. M., Mathews, C. A. (June 2017) Genetic and phenotypic overlap of specific obsessive-compulsive and attention-deficit/hyperactive subtypes with Tourette syndrome. Psychol Med. pp. 1-15. ISSN 0033-2917

Hirschtritt, Matthew, Darrow, Sabrina M., Illmann, Cornelia, Osiecki, Lisa, Grados, Marco, Sandor, Paul, Dion, Yves, King, Robert A., Pauls, David, Budman, Cathy L., Cath, Danielle C., Greenberg, Erica, Lyon, Gholson J., Yu, Dongmei, McGrath, Lauren M., McMahon, William M., Lee, Paul C., Delucchi, Kevin L., Scharf, Jeremiah M., Mathews, Carol A. (May 2017) Genetic and Phenotypic Overlap of Specific Obsessive-Compulsive Subtypes with Tourette Syndrome. Biological Psychiatry, 81 (10, Su). S361-S362. ISSN 0006-3223

Ho, Yu-Jui, Anaparthy, Naishitha, Molik, David, Aicher, Toby, Patel, Ami, Hicks, James, Hammell, Molly (December 2017) SAKE (Single-cell RNA-Seq Analysis and Klustering Evaluation) Identifies Markers of Resistance to Targeted BRAF Inhibitors in Melanoma Cell Populations. bioRxiv. (Unpublished)

Hu, Y., Wu, Q., Peng, Z., Sprague, S. A., Wang, W., Park, J., Akhunov, E., Jagadish, K. S. V., Nakata, P. A., Cheng, N., Hirschi, K. D., White, F. F., Park, S. (November 2017) Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure. Sci Rep, 7 (1). p. 15950. ISSN 2045-2322

Huang, A. Y., Yu, D., Davis, L. K., Sul, J. H., Tsetsos, F., Ramensky, V., Zelaya, I., Ramos, E. M., Osiecki, L., Chen, J. A., McGrath, L. M., Illmann, C., Sandor, P., Barr, C. L., Grados, M., Singer, H. S., Nothen, M. M., Hebebrand, J., King, R. A., Dion, Y., Rouleau, G., Budman, C. L., Depienne, C., Worbe, Y., Hartmann, A., Muller-Vahl, K. R., Stuhrmann, M., Aschauer, H., Stamenkovic, M., Schloegelhofer, M., Konstantinidis, A., Lyon, G. J., McMahon, W. M., Barta, C., Tarnok, Z., Nagy, P., Batterson, J. R., Rizzo, R., Cath, D. C., Wolanczyk, T., Berlin, C., Malaty, I. A., Okun, M. S., Woods, D. W., Rees, E., Pato, C. N., Pato, M. T., Knowles, J. A., Posthuma, D., Pauls, D. L., Cox, N. J., Neale, B. M., Freimer, N. B., Paschou, P., Mathews, C. A., Scharf, J. M., Coppola, G. (June 2017) Rare Copy Number Variants in NRXN1 and CNTN6 Increase Risk for Tourette Syndrome. Neuron, 94 (6). 1101-1111.e7. ISSN 0896-6273

Huang, Y. F., Gulko, B., Siepel, A. (April 2017) Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data. Nat Genet, 49 (4). pp. 618-624. ISSN 1061-4036

Hwang, G., Zhu, J. Y., Lee, Y. K., Kim, S., Nguyen, T. T., Kim, J., Oh, E. (July 2017) PIF4 promotes expression of LNG1 and LNG2 to induce thermomorphogenic growth in arabidopsis. Frontiers in Plant Science, 8.

I

Ingouff, M., Selles, B., Michaud, C., Vu, T. M., Berger, F., Schorn, A. J., Autran, D., Van Durme, M., Nowack, M. K., Martienssen, R. A., Grimanelli, D. (January 2017) Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes and Development, 31 (1). pp. 72-83. ISSN 08909369 (ISSN)

Ipsaro, J. J., Shen, C., Arai, E., Xu, Y., Kinney, J. B., Joshua-Tor, L., Vakoc, C. R., Shi, J. (February 2017) Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis. PLoS One, 12 (2). e0172177. ISSN 1932-6203

Izumchenko, E., Paz, K., Ciznadija, D., Sloma, I., Katz, A., Vasquez-Dunddel, D., Ben-Zvi, I., Stebbing, J., McGuire, W., Harris, W., Maki, R., Gaya, A., Bedi, A., Zacharoulis, S., Ravi, R., Wexler, L. H., Hoque, M. O., Rodriguez-Galindo, C., Pass, H., Peled, N., Davies, A., Morris, R., Hidalgo, M., Sidransky, D. (October 2017) Patient-derived xenografts effectively capture responses to oncology therapy in a heterogeneous cohort of patients with solid tumors. Ann Oncol, 28 (10). pp. 2595-2605. ISSN 0923-7534

J

Jackson, D. (March 2017) No sex please, we're (in)breeding. EMBO Journal, 36 (6). pp. 703-704. ISSN 0261-4189

Jangi, M., Fleet, C., Cullen, P., Gupta, S. V., Mekhoubad, S., Chiao, E., Allaire, N., Bennett, C. F., Rigo, F., Krainer, A. R., Hurt, J. A., Carulli, J. P., Staropoli, J. F. (March 2017) SMN deficiency in severe models of spinal muscular atrophy causes widespread intron retention and DNA damage. Proc Natl Acad Sci U S A, 114 (12). E2347-2356. ISSN 0027-8424

Janowitz, T., Williams, E. H., Marshall, A., Ainsworth, N., Thomas, P. B., Sammut, S. J., Shepherd, S., White, J., Mark, P. B., Lynch, A. G., Jodrell, D. I., Tavare, S., Earl, H. (August 2017) New Model for Estimating Glomerular Filtration Rate in Patients With Cancer. J Clin Oncol, 35 (24). pp. 2798-2805. ISSN 0732-183x

Jiang, H., Zhang, J., Han, Z., Yang, J., Ge, C., Wu, Q. (March 2017) Revealing new insights into different phosphorus-starving responses between two maize (Zea mays) inbred lines by transcriptomic and proteomic studies. Scientific Reports, 7. p. 44294. ISSN 20452322

Jiao, Y., Peluso, P., Shi, J., Liang, T., Stitzer, M. C., Wang, B., Campbell, M. S., Stein, J. C., Wei, X., Chin, C. S., Guill, K., Regulski, M., Kumari, S., Olson, A., Gent, J., Schneider, K. L., Wolfgruber, T. K., May, M. R., Springer, N. M., Antoniou, E., McCombie, W. R., Presting, G. G., McMullen, M., Ross-Ibarra, J., Dawe, R. K., Hastie, A., Rank, D. R., Ware, D. (June 2017) Improved maize reference genome with single-molecule technologies. Nature, 546 (7659). pp. 524-527. ISSN 0028-0836 (Public Dataset)

Juavinett, A. L., Erlich, J. C., Churchland, A. K. (November 2017) Decision-making behaviors: weighing ethology, complexity, and sensorimotor compatibility. Curr Opin Neurobiol, 49. pp. 42-50. ISSN 0959-4388

K

Kato, M., Vasco, D. A., Sugino, R., Narushima, D., Krasnitz, A. (September 2017) Sweepstake evolution revealed by population-genetic analysis of copy-number alterations in single genomes of breast cancer. R Soc Open Sci, 4 (9). p. 171060. ISSN 2054-5703 (Print)2054-5703

Katt, W. P., Lukey, M. J., Cerione, R. A. (January 2017) A tale of two glutaminases: homologous enzymes with distinct roles in tumorigenesis. Future Med Chem, 9 (2). pp. 223-243. ISSN 1756-8927

Kawata, M., Taniguchi, Y., Mori, D., Yano, F., Ohba, S., Chung, U. I., Shimogori, T., Mills, A. A., Tanaka, S., Saito, T. (2017) Different regulation of limb development by p63 transcript variants. PLoS One, 12 (3). e0174122. ISSN 1932-6203

Kim, Yongsoo, Yang, Guangyu Robert, Pradhan, Kith, Venkataraju, Kannan Umadevi, Bota, Mihail, García del Molino, Luis Carlos, Fitzgerald, Greg, Ram, Keerthi, He, Miao, Levine, Jesse Maurica, Mitra, Partha, Huang, Z. Josh, Wang, Xiao-Jing, Osten, Pavel (2017) Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism. Cell, 171 (2). 456-469.e22. ISSN 0092-8674

Kitagawa, M., Jackson, D. (March 2017) Plasmodesmata-Mediated Cell-to-Cell Communication in the Shoot Apical Meristem: How Stem Cells Talk. Plants, 6 (1). p. 12. ISSN 2223-7747

Klindt, David, Devaine, Marie, Daunizeau, Jean (January 2017) Does the way we read others' mind change over the lifespan? Insights from a massive web poll of cognitive skills from childhood to late adulthood. Cortex, 86. pp. 205-215. ISSN 0010-9452

Klindt, David A, Ecker, Alexander S, Euler, Thomas, Bethge, Matthias (2017) Neural system identification for large populations separating "what" and "where". In: 31st Conference on Neural Information Processing Systems (NIPS 2017), Long Beach, CA.

Koh, S. B., Mascalchi, P., Rodriguez, E., Lin, Y., Jodrell, D. I., Richards, F. M., Lyons, S. K. (January 2017) A quantitative FastFUCCI assay defines cell cycle dynamics at a single-cell level. J Cell Sci, 130 (2). pp. 512-520. ISSN 0021-9533

Kondo, S., Vedanayagam, J., Mohammed, J., Eizadshenass, S., Kan, L., Pang, N., Aradhya, R., Siepel, A., Steinhauer, J., Lai, E. C. (September 2017) New genes often acquire male-specific functions but rarely become essential in Drosophila. Genes Dev, 31 (18). pp. 1841-1846. ISSN 0890-9369

Krasnitz, Alexander, Kendall, Jude, Alexander, Joan, Levy, Dan, Wigler, Michael (July 2017) Early Detection of Cancer in Blood Using Single-Cell Analysis: A Proposal. Trends in Molecular Medicine, 23 (7). pp. 594-603. ISSN 1471-4914

Krishnan, K., Lau, B. Y., Ewall, G., Huang, Z. J., Shea, S. D. (January 2017) MECP2 regulates cortical plasticity underlying a learned behaviour in adult female mice. Nat Commun, 8. p. 14077. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Krug, L., Chatterjee, N., Borges-Monroy, R., Hearn, S., Liao, W., Morrill, K., Prazak, L., Rozhkov, N., Theodorou, D., Hammell, M., Dubnau, J. (2017) Datasets from "Krug, L., Chatterjee, N., Borges-Monroy, R., Hearn, S., Liao, W. W., Morrill, K., Prazak, L., Rozhkov, N., Theodorou, D., Hammell, M., Dubnau, J. (2017) Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS. PLoS Genet". [Dataset]

Krug, L., Chatterjee, N., Borges-Monroy, R., Hearn, S., Liao, W. W., Morrill, K., Prazak, L., Rozhkov, N., Theodorou, D., Hammell, M., Dubnau, J. (March 2017) Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS. PLoS Genet, 13 (3). e1006635. ISSN 1553-7390 (Public Dataset)

Kulkarni, S., Micci, M. A., Leser, J., Shin, C., Tang, S. C., Fu, Y. Y., Liu, L., Li, Q., Saha, M., Li, C., Enikolopov, G., Becker, L., Rakhilin, N., Anderson, M., Shen, X., Dong, X., Butte, M. J., Song, H., Southard-Smith, E. M., Kapur, R. P., Bogunovic, M., Pasricha, P. J. (May 2017) Adult enteric nervous system in health is maintained by a dynamic balance between neuronal apoptosis and neurogenesis. Proc Natl Acad Sci U S A, 114 (18). E3709-E3718. ISSN 0027-8424

Kumar, Vijay, Rosenbaum, Julie, Wang, Zihua, Forcier, Talitha, Ronemus, Michael, Wigler, Michael, Levy, Dan (June 2017) Mutational sequencing for accurate count and long-range assembly. bioRxiv.

L

Lagarde, J., Uszczynska-Ratajczak, B., Carbonell, S., Perez-Lluch, S., Abad, A., Davis, C., Gingeras, T. R., Frankish, A., Harrow, J., Guigo, R., Johnson, R. (December 2017) High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. Nat Genet, 49 (12). pp. 1731-1740. ISSN 1061-4036

Lak, A., Nomoto, K., Keramati, M., Sakagami, M., Kepecs, A. (March 2017) Midbrain Dopamine Neurons Signal Belief in Choice Accuracy during a Perceptual Decision. Curr Biol, 27 (6). pp. 821-832. ISSN 0960-9822

Lanning, B. R., Vakoc, C. R. (April 2017) Single-minded CRISPR screening. Nat Biotechnol, 35 (4). pp. 339-340. ISSN 1087-0156

Lee, J. H. (March 2017) Quantitative approaches for investigating the spatial context of gene expression. Wiley Interdiscip Rev Syst Biol Med, 9 (2). ISSN 1939-005X (Electronic)1939-005X (Linking)

Lee, Je H. (July 2017) De Novo Gene Expression Reconstruction in Space. Trends in Molecular Medicine, 23 (7). pp. 583-593. ISSN 1471-4914

Lee, M., Naguib, A., Trotman, L. C., El-Amine, N. (December 2017) Endocytosis and PTEN in Tumor Suppression. Molecular Biology of the Cell, 28 (26 ASC). Abstract M257. ISSN 1059-15241939-4586

Li, M. A., Amaral, P. P., Cheung, P., Bergmann, J. H., Kinoshita, M., Kalkan, T., Ralser, M., Robson, S., Meyenn, F. V., Paramor, M., Yang, F., Chen, C., Nichols, J., Spector, D. L., Kouzarides, T., He, L., Smith, A. (August 2017) A lncRNA fine tunes the dynamics of a cell state transition involving Lin28, let-7 and de novo DNA methylation. Elife, 6. ISSN 2050-084x

Li, Q., Ko, H., Qian, Z. M., Yan, L. Y. C., Chan, D. C. W., Arbuthnott, G., Ke, Y., Yung, W. H. (June 2017) Refinement of learned skilled movement representation in motor cortex deep output layer. Nat Commun, 8. p. 15834. ISSN 2041-1723

Li, Y., Wang, D., Ascoli, G. A., Mitra, P., Wang, Y. (August 2017) Metrics for comparing neuronal tree shapes based on persistent homology. PLoS One, 12 (8). e0182184. ISSN 1932-6203

Li, S., Wu, P., Moses, J. E., Sharpless, K. B. (March 2017) Multidimensional SuFEx Click Chemistry: Sequential Sulfur(VI) Fluoride Exchange Connections of Diverse Modules Launched From An SOF(4) Hub. Angew Chem Int Ed Engl, 56 (11). pp. 2903-2908. ISSN 1433-7851 (Print)1433-7851

Liberti, M. V., Dai, Z., Wardell, S. E., Baccile, J. A., Liu, X., Gao, X., Baldi, R., Mehrmohamadi, M., Johnson, M. O., Madhukar, N. S., Shestov, A. A., Chio, I. I. C., Elemento, O., Rathmell, J. C., Schroeder, F. C., McDonnell, D. P., Locasale, J. W. (October 2017) A Predictive Model for Selective Targeting of the Warburg Effect through GAPDH Inhibition with a Natural Product. Cell Metab, 26 (4). pp. 648-659. ISSN 1550-4131

Licata, A. M., Kaufman, M. T., Raposo, D., Ryan, M. B., Sheppard, J. P., Churchland, A. K. (May 2017) Posterior parietal cortex guides visual decisions in rats. J Neurosci, 37 (19). pp. 4954-4966. ISSN 0270-6474

Lin, A., Giuliano, C. J., Sayles, N. M., Sheltzer, J. M. (March 2017) CRISPR/Cas9 mutagenesis invalidates a putative cancer dependency targeted in on-going clinical trials. Elife, 6. e24179. ISSN 2050-084x

Lira, B. S., Gramegna, G., Trench, B., Alves, F. R. R., Silva, E. M., Silva, G. F. F., Thirumalaikumar, V. P., Lupi, A. C. D., Demarco, D., Purgatto, E., Nogueira, F. T., Balazadeh, S., Freschi, L., Rossi, M. (July 2017) Manipulation of a senescence-associated gene improves fleshy fruit yield. Plant Physiol. ISSN 0032-0889

Lou, Emil, Gholami, Sepideh, Romin, Yevgeniy, Thayanithy, Venugopal, Fujisawa, Sho, Desir, Snider, Steer, Clifford J, Subramanian, Subbaya, Fong, Yuman, Manova-Todorova, Katia, Moore, Malcolm AS (October 2017) Imaging Tunneling Membrane Tubes Elucidates Cell Communication in Tumors. Trends in Cancer, 3 (10). pp. 678-685. ISSN 2405-8033

Lu, J., Tucciarone, J., Padilla-Coreano, N., He, M., Gordon, J. A., Huang, Z. J. (October 2017) Selective inhibitory control of pyramidal neuron ensembles and cortical subnetworks by chandelier cells. Nat Neurosci, 20 (10). pp. 1377-1383. ISSN 1097-6256

Lukey, M. J., Katt, W. P., Cerione, R. A. (May 2017) Targeting amino acid metabolism for cancer therapy. Drug Discov Today, 22 (5). pp. 796-804. ISSN 1878-5832

Luo, Ruibang, Sedlazeck, Fritz J., Darby, Charlotte A., Kelly, Stephen M., Schatz, Michael C. (November 2017) LRSim: A Linked-Reads Simulator generating insights for better genome partitioning. Computational and Structural Biotechnology Journal, 15. pp. 478-484. ISSN 2001-0370

M

Majoros, W. H., Campbell, M. S., Holt, C., DeNardo, E., Ware, D., Allen, A. S., Yandell, M., Reddy, T. E. (May 2017) High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinformatics, 33 (10). pp. 1437-1446. ISSN 1367-4811 (Electronic)1367-4803 (Linking)

Majsec, K., Bhuiyan, N. H., Sun, Q., Kumari, S., Kumar, V., Ware, D., van Wijk, K. J. (November 2017) The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis. Plant Cell, 29 (11). pp. 2687-2710. ISSN 1040-4651

Manchado, E., Huang, C. H., Tasdemir, N., Tschaharganeh, D. F., Wilkinson, J. E., Lowe, S. W. (January 2017) A Pipeline for Drug Target Identification and Validation. Cold Spring Harb Symp Quant Biol, 81. pp. 257-267. ISSN 1943-4456 (Electronic)0091-7451 (Linking)

Manzi, Lucio, Barrow, Andrew S, Hopper, Jonathan TS, Kaminska, Renata, Kleanthous, Colin, Robinson, Carol V, Moses, John E, Oldham, Neil J (November 2017) Carbene Footprinting Reveals Binding Interfaces of a Multimeric Membrane‐Spanning Protein. Angewandte Chemie International Edition, 129 (47). pp. 15069-15073. ISSN 0044-8249

Manzi, L., Barrow, A. S., Hopper, J. T. S., Kaminska, R., Kleanthous, C., Robinson, C. V., Moses, J. E., Oldham, N. J. (November 2017) Carbene Footprinting Reveals Binding Interfaces of a Multimeric Membrane-Spanning Protein. Angew Chem Int Ed Engl, 56 (47). pp. 14873-14877. ISSN 1433-7851

Mardis, Elaine, McCombie, W Richard (August 2017) Solution-Phase Exome Capture. Cold Spring Harbor Protocols, 2017 (8). pdb.prot094680. ISSN 1940-3402

Martelotto, L. G., Baslan, T., Kendall, J., Geyer, F. C., Burke, K. A., Spraggon, L., Piscuoglio, S., Chadalavada, K., Nanjangud, G., Ng, C. K., Moody, P., D'Italia, S., Rodgers, L., Cox, H., da Cruz Paula, A., Stepansky, A., Schizas, M., Wen, H. Y., King, T. A., Norton, L., Weigelt, B., Hicks, J. B., Reis-Filho, J. S. (March 2017) Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples. Nat Med, 23 (3). pp. 376-385. ISSN 1546-170X (Electronic)1078-8956 (Linking)

Miller, J. R., Zhou, P., Mudge, J., Gurtowski, J., Lee, H., Ramaraj, T., Walenz, B. P., Liu, J., Stupar, R. M., Denny, R., Song, L., Singh, N., Maron, L. G., McCouch, S. R., McCombie, W. R., Schatz, M. C., Tiffin, P., Young, N. D., Silverstein, K. A. T. (July 2017) Hybrid assembly with long and short reads improves discovery of gene family expansions. BMC Genomics, 18 (1). p. 541. ISSN 1471-2164

Mills, A. A. (January 2017) The Chromodomain Helicase DNA-Binding Chromatin Remodelers: Family Traits that Protect from and Promote Cancer. Cold Spring Harb Perspect Med. ISSN 2157-1422 (Electronic)2157-1422 (Linking)

Monson, E., Pirooznia, M., Parla, J., Kramer, M., Goes, F., Breen, M., Gaynor, S., de Klerk, K., Jancic, D., Karchin, R., McCombie, W., Zandi, P., Potash, J., Willour, V. (October 2017) ASSESSMENT OF WHOLE-EXOME SEQUENCE DATA IN ATTEMPTED SUICIDE WITHIN A BIPOLAR COHORT. European Neuropsychopharmacology, 27. Meeting Abstract 20; S267-S268. ISSN 0924-977X

Monson, E. T., Pirooznia, M., Parla, J., Kramer, M., Goes, F. S., Gaine, M. E., Gaynor, S. C., de Klerk, K., Jancic, D., Karchin, R., McCombie, W. R., Zandi, P. P., Potash, J. B., Willour, V. L. (July 2017) Assessment of Whole-Exome Sequence Data in Attempted Suicide within a Bipolar Disorder Cohort. Mol Neuropsychiatry, 3 (1). pp. 1-11. ISSN 2296-9209 (Print)2296-9179

Munoz, Adriana, Yamrom, Boris, Lee, Yoon-ha, Andrews, Peter, Marks, Steven, Lin, Kuan-Ting, Wang, Zihua, Krainer, Adrian R., Darnell, Robert B., Wigler, Michael, Iossifov, Ivan (May 2017) De novo indels within introns contribute to ASD incidence. bioRxiv. p. 137471. (Unpublished)

N

Nakamuta, S., Yang, Y. T., Wang, C. L., Gallo, N. B., Yu, J. R., Tai, Y., Van Aelst, L. (December 2017) Dual role for DOCK7 in tangential migration of interneuron precursors in the postnatal forebrain. J Cell Biol, 216 (12). pp. 4313-4330. ISSN 0021-9525

Narasimhan, Arun, Venkataraju, Kannan Umadevi, Mizrachi, Judith, Albeanu, Dinu F, Osten, Pavel (April 2017) Oblique light-sheet tomography: fast and high resolution volumetric imaging of mouse brains. bioRxiv. (Submitted)

Navlakha, S. (February 2017) Learning the Structural Vocabulary of a Network. Neural Comput, 29 (2). pp. 287-312. ISSN 0899-7667

Noguchi, S., Arakawa, T., Fukuda, S., Furuno, M., Hasegawa, A., Hori, F., Ishikawa-Kato, S., Kaida, K., Kaiho, A., Kanamori-Katayama, M., Kawashima, T., Kojima, M., Kubosaki, A., Manabe, R. I., Murata, M., Nagao-Sato, S., Nakazato, K., Ninomiya, N., Nishiyori-Sueki, H., Noma, S., Saijyo, E., Saka, A., Sakai, M., Simon, C., Suzuki, N., Tagami, M., Watanabe, S., Yoshida, S., Arner, P., Axton, R. A., Babina, M., Baillie, J. K., Barnett, T. C., Beckhouse, A. G., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Carlisle, A. J., Clevers, H. C., Davis, C. A., Detmar, M., Dohi, T., Edge, A. S. B., Edinger, M., Ehrlund, A., Ekwall, K., Endoh, M., Enomoto, H., Eslami, A., Fagiolini, M., Fairbairn, L., Farach-Carson, M. C., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L. M., Fujita, R., Furusawa, J. I., Geijtenbeek, T. B., Gingeras, T., Goldowitz, D., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Hasegawa, Y., Herlyn, M., Heutink, P., Hitchens, K. J., Hume, D. A., Ikawa, T., Ishizu, Y., Kai, C., Kawamoto, H., Kawamura, Y. I., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klein, S., Klinken, S. P., Knox, A. J., Kojima, S., Koseki, H., Koyasu, S., Lee, W., Lennartsson, A., Mackay-Sim, A., Mejhert, N., Mizuno, Y., Morikawa, H., Morimoto, M., Moro, K., Morris, K. J., Motohashi, H. (August 2017) FANTOM5 CAGE profiles of human and mouse samples. Sci Data, 4. p. 170112. ISSN 2052-4463

Noguchi, Y., Yuan, Z., Bai, L., Schneider, S., Zhao, G., Stillman, B., Speck, C., Li, H. (November 2017) Cryo-EM structure of Mcm2-7 double hexamer on DNA suggests a lagging-strand DNA extrusion model. Proc Natl Acad Sci U S A, 114 (45). E9529-9538. ISSN 0027-8424

O

Oberauer, K., Stoneking, C., Wabersich, D., Lin, H. Y. (May 2017) Hierarchical Bayesian measurement models for continuous reproduction of visual features from working memory. J Vis, 17 (5). p. 11. ISSN 1534-7362

Ohlund, D., Handly-Santana, A., Biffi, G., Elyada, E., Almeida, A. S., Ponz-Sarvise, M., Corbo, V., Oni, T. E., Hearn, S. A., Lee, E. J., Chio, II, Hwang, C. I., Tiriac, H., Baker, L. A., Engle, D. D., Feig, C., Kultti, A., Egeblad, M., Fearon, D. T., Crawford, J. M., Clevers, H., Park, Y., Tuveson, D. A. (March 2017) Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer. J Exp Med, 214 (3). pp. 579-596. ISSN 0022-1007

Omrani, M., Kaufman, M. T., Hatsopoulos, N. G., Cheney, P. D. (September 2017) Perspectives on classical controversies about the motor cortex. J Neurophysiol, 118 (3). pp. 1828-1848. ISSN 0022-3077

P

Pal, D., Pertot, A., Shirole, N. H., Yao, Z., Anaparthy, N., Garvin, T., Cox, H., Chang, K., Rollins, F., Kendall, J., Edwards, L., Singh, V. A., Stone, G. C., Schatz, M. C., Hicks, J., Hannon, G., Sordella, R. (January 2017) TGF-beta reduces DNA ds-break repair mechanisms to heighten genetic diversity and adaptability of CD44+/CD24- cancer cells. Elife, 6. ISSN 2050-084X (Electronic)2050-084X (Linking)

Patel, S. J., Trivedi, G. L., Darie, C. C., Clarkson, B. D. (March 2017) The possible roles of B-cell novel protein-1 (BCNP1) in cellular signalling pathways and in cancer. J Cell Mol Med, 21 (3). pp. 456-466. ISSN 1582-4934 (Electronic)1582-1838 (Linking)

Pattison, S. H., Gibson, D. S., Johnston, E., Peacock, S., Rivera, K., Tunney, M. M., Pappin, D. J., Elborn, J. S. (July 2017) Proteomic profile of cystic fibrosis sputum cells in adults chronically infected with Pseudomonas aeruginosa. Eur Respir J, 50 (1). ISSN 0903-1936

Paul, A., Crow, M., Raudales, R., He, M., Gillis, J., Huang, Z. J. (2017) Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity. Cell.

Peikon, I. D., Kebschull, J. M., Vagin, V. V., Ravens, D. I., Sun, Y. C., Brouzes, E., Correa, I. R., Bressan, D., Zador, A. M. (April 2017) Using high-throughput barcode sequencing to efficiently map connectomes. Nucleic Acids Res. ISSN 0305-1048

Perurena, N., Zandueta, C., Martinez-Canarias, S., Moreno, H., Vicent, S., Almeida, A. S., Guruceaga, E., Gomis, R. R., Santisteban, M., Egeblad, M., Hermida, J., Lecanda, F. (January 2017) EPCR promotes breast cancer progression by altering SPOCK1/testican 1-mediated 3D growth. J Hematol Oncol, 10 (1). p. 23. ISSN 1756-8722 (Electronic)1756-8722 (Linking)

Peyser, A., Bristow, S. L., Puig, O., Pollock, A., Mills, A., Niknazar, M., Hershlag, A. (September 2017) Do mutations in CHD5 cause male infertility? Fertility and Sterility, 108 (3, Sup). e140-e141. ISSN 0015-0282

Peyser, A., Bristow, S. L., Puig, O., Pollock, A., Mills, A., Niknazar, M., Hershlag, A. (September 2017) Do tumor suppressor genes (TSG) play a role in diminished ovarian reserve (DOR). Fertility and Sterility, 108 (3, Sup). e220. ISSN 0015-0282

Pirooznia, M., Goes, F., Parla, J., Kramer, M., Monson, E., Han, S., Jancic, D., Karchin, R., Willour, V., McCombie, W., Potash, J., Zandi, P. (October 2017) RARE BIPOLAR LOCI IDENTIFICATION THROUGH WHOLE EXOME SEQUENCING. European Neuropsychopharmacology, 27 (Supple). Abstract S242-S242. ISSN 0924-977X

Pommier, Arnaud, Anaparthy, Naishitha, Memos, Nicoletta, Kelley, Larkin, Gouronnec, Alizée, Albrengues, Jean, Egeblad, Mikala, Iacobuzio-Donahue, Christine, Lyons, Scott, Fearon, Douglas (2017) Endoplasmic reticulum stress engenders immune-resistant, latent pancreatic cancer metastases. Science. (Submitted)

Puckett, L., Fein, M. R., He, X., Egeblad, M. (2017) Targeting Tumor-Mediated Immune Suppression in a Murine Model of Breast Cancer: Radiation and Chemokine Receptor CCR2. International Journal of Radiation Oncology*Biology*Physics, 99 (2, Sup). S164. ISSN 0360-3016

Q

Qian, Y., Cao, Y., Deng, B., Yang, G., Li, J., Xu, R., Zhang, D., Huang, J., Rao, Y. (October 2017) Sleep homeostasis regulated by 5HT2b receptor in a small subset of neurons in the dorsal fan-shaped body of drosophila. Elife, 6. e26519. ISSN 2050-084x

R

Ramani, R., Megason, G., Schallheim, J., Karlson, C., Vijayakumar, V., Vijayakumar, S., Hicks, C. (April 2017) Integrative Analysis of MicroRNA-Mediated Gene Signatures and Pathways Modulating White Blood Cell Count in Childhood Acute Lymphoblastic Leukemia. Biomarker Insights, 12. p. 1177271917702895. ISSN 1177-2719

Roche, B., Arcangioli, B., Martienssen, R. (September 2017) New roles for Dicer in the nucleolus and its relevance to cancer. Cell Cycle, 16 (18). pp. 1643-1653. ISSN 1551-4005

Roche, B., Arcangioli, B., Martienssen, R. A. (July 2017) Transcriptional reprogramming in cellular quiescence. RNA Biol, 14 (7). pp. 843-853. ISSN 1547-6286

Rodríguez-Leal, Daniel, Lemmon, Zachary H., Man, Jarrett, Bartlett, Madelaine E., Lippman, Zachary B. (October 2017) Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing. Cell, 171 (2). pp. 470-80. ISSN 0092-8674

Roe, J. S., Hwang, C. I., Somerville, T. D. D., Milazzo, J. P., Lee, E. J., Da Silva, B., Maiorino, L., Tiriac, H., Young, C. M., Miyabayashi, K., Filippini, D., Creighton, B., Burkhart, R. A., Buscaglia, J. M., Kim, E. J., Grem, J. L., Lazenby, A. J., Grunkemeyer, J. A., Hollingsworth, M. A., Grandgenett, P. M., Egeblad, M., Park, Y., Tuveson, D. A., Vakoc, C. R. (August 2017) Enhancer Reprogramming Promotes Pancreatic Cancer Metastasis. Cell, 170 (5). pp. 875-888. ISSN 0092-8674

Roe, J. S., Vakoc, C. R. (February 2017) The Essential Transcriptional Function of BRD4 in Acute Myeloid Leukemia. Cold Spring Harb Symp Quant Biol, 81. pp. 61-66. ISSN 0091-7451

Romero-Hernandez, A., Furukawa, H. (July 2017) Novel mode of antagonist binding in NMDA receptors revealed by the crystal structure of the GluN1-GluN2A ligand-binding domain complexed to NVP-AAM077. Mol Pharmacol, 92 (1). pp. 22-29. ISSN 0026-895x (Public Dataset)

Roper, J., Tammela, T., Cetinbas, N. M., Akkad, A., Roghanian, A., Rickelt, S., Almeqdadi, M., Wu, K., Oberli, M. A., Sanchez-Rivera, F., Park, Y. K., Liang, X., Eng, G., Taylor, M. S., Azimi, R., Kedrin, D., Neupane, R., Beyaz, S., Sicinska, E. T., Suarez, Y., Yoo, J., Chen, L., Zukerberg, L., Katajisto, P., Deshpande, V., Bass, A. J., Tsichlis, P. N., Lees, J., Langer, R., Hynes, R. O., Chen, J., Bhutkar, A., Jacks, T., Yilmaz, O. H. (June 2017) In vivo genome editing and organoid transplantation models of colorectal cancer and metastasis. Nat Biotechnol, 35 (6). pp. 569-576. ISSN 1546-1696 (Electronic)1087-0156 (Linking)

Rosenfeld, Jeffrey, Goodwin, Sara, Ganesan, Shridar (2017) The use of long-read sequencing to determine the structure of the Her2 amplicon in breast cancer. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017, 2017 Apr 1-5, Washington, DC..

Ruiz-Reig, N., Andres, B., Huilgol, D., Grove, E. A., Tissir, F., Tole, S., Theil, T., Herrera, E., Fairen, A. (May 2017) Lateral Thalamic Eminence: A Novel Origin for mGluR1/Lot Cells. Cereb Cortex, 27 (5). pp. 2841-2856. ISSN 1460-2199 (Electronic)1047-3211 (Linking)

S

Sacristán, Catarina, Tuveson, David A (May 2017) Quid pro Quo: A Tumor is Not Alone. Trends in Molecular Medicine, 23 (5). pp. 375-376. ISSN 1471-4914

Scaduto, C. M., Kabrawala, S., Thomson, G. J., Scheving, W., Ly, A., Anderson, M. Z., Whiteway, M., Bennett, R. J. (December 2017) Epigenetic control of pheromone MAPK signaling determines sexual fecundity in Candida albicans. Proc Natl Acad Sci U S A, 114 (52). pp. 13780-13785. ISSN 0027-8424

Schatz, M. C. (March 2017) Nanopore sequencing meets epigenetics. Nat Methods, 14 (4). pp. 347-348. ISSN 1548-7091

Scholes, D. R., Dalrymple, J., Mesa, J. M., Banta, J. A., Paige, K. N. (March 2017) An assessment of the molecular mechanisms contributing to tolerance to apical damage in natural populations of Arabidopsis thaliana. Plant Ecology, 218 (3). pp. 265-276. ISSN 1385-0237

Schorn, A. J., Gutbrod, M. J., LeBlanc, C., Martienssen, R. (June 2017) LTR-Retrotransposon Control by tRNA-Derived Small RNAs. Cell, 170 (1). pp. 61-71. ISSN 0092-8674 (Public Dataset)

Sekiya, Michiko, Maruko-Otake, Akiko, Hearn, Stephen, Sakakibara, Yasufumi, Fujisaki, Naoki, Suzuki, Emiko, Ando, Kanae, Iijima, Koichi M. (June 2017) EDEM Function in ERAD Protects against Chronic ER Proteinopathy and Age-Related Physiological Decline in Drosophila. Developmental Cell, 41 (6). 652-664.e5. ISSN 1534-5807

Senturk, S., Shirole, N. H., Nowak, D. G., Corbo, V., Pal, D., Vaughan, A., Tuveson, D. A., Trotman, L. C., Kinney, J. B., Sordella, R. (February 2017) Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization. Nat Commun, 8. p. 14370. ISSN 2041-1723 (Public Dataset)

Sever, R., Janssen, K. (September 2017) Career Options for Scientists. Cold Spring Harb Perspect Biol, 9 (9). ISSN 1943-0264

Shao, L., Lu, B., Wen, Z., Teng, S., Wang, L., Zhao, Y., Wang, L., Ishizuka, K., Xu, X., Sawa, A., Song, H., Ming, G., Zhong, Y. (July 2017) Disrupted-in-Schizophrenia-1 (DISC1) protein disturbs neural function in multiple disease-risk pathways. Hum Mol Genet, 26 (14). pp. 2634-2648. ISSN 0964-6906

Sheikh, H., Pirooznia, M., Parla, J., Kramer, M., Goes, F., Jancic, D., Karchin, R., Willour, V., McCombie, W., Zandi, P., Potash, J. (October 2017) EXOME SEQUENCING IN BIPOLAR DISORDER WITH COMORBID PANIC: GENE SET AND PATHWAY BASED-ANALYSES SUGGEST A ROLE FOR GLUTAMATE AND CALCIUM SIGNALING. European Neuropsychopharmacology, 27. Abstract S157. ISSN 0924-977X

Sheltzer, Jason M., Ko, Julie H., Replogle, John M., Habibe Burgos, Nicole C., Chung, Erica S., Meehl, Colleen M., Sayles, Nicole M., Passerini, Verena, Storchova, Zuzana, Amon, Angelika (February 2017) Single-chromosome Gains Commonly Function as Tumor Suppressors. Cancer Cell, 31 (2). pp. 240-255. ISSN 1535-6108 (Public Dataset)

Sheridan, M. A., Yunusov, D., Balaraman, V., Alexenko, A. P., Yabe, S., Verjovski-Almeida, S., Schust, D. J., Franz, A. W., Sadovsky, Y., Ezashi, T., Roberts, R. M. (February 2017) Vulnerability of primitive human placental trophoblast to Zika virus. Proc Natl Acad Sci U S A, 114 (9). E1587-e1596. ISSN 0027-8424

Shuvaev, Sergey, Giaffar, Hamza, Koulakov, Alexei A (December 2017) Representations of Sound in Deep Learning of Audio Features from Music. arXiv. (Submitted)

Shuvaev, S. A., Lazutkin, A. A., Kedrov, A. V., Anokhin, K. V., Enikolopov, G. N., Koulakov, A. A. (2017) DALMATIAN: An Algorithm for Automatic Cell Detection and Counting in 3D. Front Neuroanat, 11. p. 117. ISSN 1662-5129 (Print)1662-5129

Silverman, S. M., Moses, J. E., Sharpless, K. B. (January 2017) Reengineering Antibiotics to Combat Bacterial Resistance: Click Chemistry [1,2,3]-Triazole Vancomycin Dimers with Potent Activity against MRSA and VRE. Chemistry, 23 (1). pp. 79-83. ISSN 0947-6539

Singh, D. K., Kollipara, R. K., Vemireddy, V., Yang, X. L., Sun, Y., Regmi, N., Klingler, S., Hatanpaa, K. J., Raisanen, J., Cho, S. K., Sirasanagandla, S., Nannepaga, S., Piccirillo, S., Mashimo, T., Wang, S., Humphries, C. G., Mickey, B., Maher, E. A., Zheng, H., Kim, R. S., Kittler, R., Bachoo, R. M. (January 2017) Oncogenes Activate an Autonomous Transcriptional Regulatory Circuit That Drives Glioblastoma. Cell Rep, 18 (4). pp. 961-976. ISSN 2211-1247 (Electronic)

Singh, Dinesh K., Kollipara, Rahul K., Vemireddy, Vamsidara, Yang, Xiao-Li, Sun, Yuxiao, Regmi, Nanda, Klingler, Stefan, Hatanpaa, Kimmo J., Raisanen, Jack, Cho, Steve K., Sirasanagandla, Shyam, Nannepaga, Suraj, Piccirillo, Sara, Mashimo, Tomoyuki, Wang, Shan, Humphries, Caroline G., Mickey, Bruce, Maher, Elizabeth A., Zheng, Hongwu, Kim, Ryung S., Kittler, Ralf, Bachoo, Robert M. (January 2017) Oncogenes Activate an Autonomous Transcriptional Regulatory Circuit That Drives Glioblastoma. Cell Reports, 18 (4). pp. 961-976. ISSN 2211-1247

Sinha, S., Fu, Y. Y., Grimont, A., Ketcham, M., Lafaro, K. J., Saglimbeni, J. A., Askan, G., Bailey, J. M., Melchor, J. P., Zhong, Y., Joo, M. G., Grbovic-Huezo, O., Yang, I. H., Basturk, O., Baker, L., Park, Y., Kurtz, R. C., Tuveson, D. A., Leach, S. D., Pasricha, P. (April 2017) PanIN neuroendocrine cells promote tumorigenesis via neuronal crosstalk. Cancer Res, 77 (8). pp. 1868-1879. ISSN 1538-7445 (Electronic)0008-5472 (Linking)

Sivaramakrishnan, M., McCarthy, K. D., Campagne, S., Huber, S., Meier, S., Augustin, A., Heckel, T., Meistermann, H., Hug, M. N., Birrer, P., Moursy, A., Khawaja, S., Schmucki, R., Berntenis, N., Giroud, N., Golling, S., Tzouros, M., Banfai, B., Duran-Pacheco, G., Lamerz, J., Hsiu Liu, Y., Luebbers, T., Ratni, H., Ebeling, M., Clery, A., Paushkin, S., Krainer, A. R., Allain, F. H., Metzger, F. (November 2017) Binding to SMN2 pre-mRNA-protein complex elicits specificity for small molecule splicing modifiers. Nat Commun, 8 (1). p. 1476. ISSN 2041-1723

Sivaramakrishnan, M, McCarthy, KD, Huber, S, Campagne, S, Meier, S, Augustin, A, Heckel, T, Meistermann, H, Hug, M, Birrer, P, Moursy, A, Khawaja, S, Schmucki, R, Berntenis, N, Giroud, N, Golling, S, Tzouros, M, Banfai, B, Duran-Pacheco, G, Lamerz, J, Liu, YH, Luebbers, T, Ratni, H, Clery, A, Ebeling, M, Paushkin, S, Krainer, AR, Allain, F, Metzger, F (March 2017) Binding to a novel RNA-protein complex creates specificity for small molecule splicing modifiers to treat SMA. In: 10th Neuromuscular Translational Research Conference.

Skopelitis, Damianos S., Benkovics, Anna H., Husbands, Aman Y., Timmermans, Marja C. P. (November 2017) Boundary Formation through a Direct Threshold-Based Readout of Mobile Small RNA Gradients. Developmental Cell, 43 (3). pp. 265-273. ISSN 1534-5807

Smedley, C. J., Barrow, A. S., Spiteri, C., Giel, M. C., Sharma, P., Moses, J. E. (July 2017) Sulfur-Fluoride Exchange (SuFEx)-Mediated Synthesis of Sterically Hindered and Electron-Deficient Secondary and Tertiary Amides via Acyl Fluoride Intermediates. Chemistry, 23 (42). pp. 9990-9995. ISSN 0947-6539

Soyk, S., Muller, N. A., Park, S. J., Schmalenbach, I., Jiang, K., Hayama, R., Zhang, L., Van Eck, J., Jimenez-Gomez, J. M., Lippman, Z. B. (January 2017) Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nat Genet, 49 (1). pp. 162-168. ISSN 1546-1718 (Electronic)1061-4036 (Linking) (Public Dataset)

Soyk, Sebastian, Lemmon, Zachary H., Oved, Matan, Fisher, Josef, Liberatore, Katie L., Park, Soon Ju, Goren, Anna, Jiang, Ke, Ramos, Alexis, van der Knaap, Esther, Van Eck, Joyce, Zamir, Dani, Eshed, Yuval, Lippman, Zachary B. (June 2017) Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 169 (6). pp. 1142-1155. ISSN 0092-8674

Spector, D. L. (April 2017) The Role of Long Non-Coding RNAs in Nuclear Organization and Disease. Faseb Journal, 31 (Supple). Meeting Abstract 255.2. ISSN 0892-66381530-6860

Stacchiotti, S., Mir, O., Le Cesne, A., Vincenzi, B., Fedenko, A., Maki, R. G., Somaiah, N., Patel, S., Brahmi, M., Blay, J. Y., Boye, K., Sundby Hall, K., Gelderblom, H., Hindi, N., Martin-Broto, J., Kosela, H., Rutkowski, P., Italiano, A., Duffaud, F., Kobayashi, E., Casali, P. G., Provenzano, S., Kawai, A. (July 2017) Activity of Pazopanib and Trabectedin in Advanced Alveolar Soft Part Sarcoma. Oncologist. ISSN 1083-7159

Stanley, Robert, Martin, Pierre-Marie, Ross, Adam, Freitas, Andiara, Iafrati, Jillian, Moyer, Caitlin, Brumback, Audrey, Pirooznia, Mehdi, McCombie, W. Richard, Potash, James, Zandi, Peter, Purcell, Shaun, Sanders, Stephan, Zuo, Yi, Sohal, Vikaas, Cheyette, Benjamin (May 2017) Wnt/β-Catenin Pathway Contributions to Dendritic Spine and Glutamatergic Synapse Formation Responsive to Lithium-Mediated GSK3 Inhibition. Biological Psychiatry, 81 (10, Su). S286. ISSN 0006-3223

Starosta, Sarah, Bartetzko, Isabelle, Stüttgen, Maik C., Güntürkün, Onur (October 2017) Integration of contextual cues into memory depends on “prefrontal” N-methyl-D-aspartate receptors. Neurobiology of Learning and Memory, 144 (Supple). pp. 19-26. ISSN 1074-7427

Stillman, Bruce (2017) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Stoltzfus, A., McCandlish, D. M. (September 2017) Mutational biases influence parallel adaptation. Mol Biol Evol, 34 (9). pp. 2163-2172. ISSN 0737-4038

Strong, Vivian E, Gholami, Sepideh, Shah, Manish A, Tang, Laura H, Janjigian, Yelena Y, Schattner, Mark, Selby, Luke V, Yoon, Sam S, Salo-Mullen, Erin, Stadler, Zsofia K, Kelsen, David, Brennan, Murray F, Coit, Daniel G (December 2017) Total Gastrectomy for Hereditary Diffuse Gastric Cancer at a Single Center: Postsurgical Outcomes in 41 Patients. Annals of Surgery, 266 (6). pp. 1006-1012. ISSN 0003-4932

T

TCW, J., Carvalho, C. M. B., Yuan, B., Gu, S., Altheimer, A. N., McCarthy, S., Malhotra, D., Sebat, J., Siegel, A. J., Rudolph, U., Lupski, J. R., Levy, D. L., Brennand, K. J. (March 2017) Divergent Levels of Marker Chromosomes in an hiPSC-Based Model of Psychosis. Stem Cell Reports, 8 (3). pp. 519-528.

Tai, Y., Jia, Y. (May 2017) TRPC Channels and Neuron Development, Plasticity, and Activities. Adv Exp Med Biol, 976. pp. 95-110. ISSN 0065-2598 (Print)0065-2598

Tai, Y., Yang, S., Liu, Y., Shao, W. (May 2017) TRPC Channels in Health and Disease. Adv Exp Med Biol, 976. pp. 35-45. ISSN 0065-2598 (Print)0065-2598

Takikawa, M., Tarumoto, Y., Ishikawa, F. (February 2017) Fission yeast Stn1 is crucial for semi-conservative replication at telomeres and subtelomeres. Nucleic Acids Res, 45 (3). pp. 1255-1269. ISSN 0305-1048

Taniguchi, Y., Kawata, M., Ho Chang, S., Mori, D., Okada, K., Kobayashi, H., Sugita, S., Hosaka, Y., Inui, H., Taketomi, S., Yano, F., Ikeda, T., Akiyama, H., Mills, A. A., Chung, U. I., Tanaka, S., Kawaguchi, H., Saito, T. (March 2017) Regulation of Chondrocyte Survival in Mouse Articular Cartilage by p63. Arthritis and Rheumatology, 69 (3). pp. 598-609. ISSN 2326-5205

Tawbi, H. A., Burgess, M., Bolejack, V., Van Tine, B. A., Schuetze, S. M., Hu, J., D'Angelo, S., Attia, S., Riedel, R. F., Priebat, D. A., Movva, S., Davis, L. E., Okuno, S. H., Reed, D. R., Crowley, J., Butterfield, L. H., Salazar, R., Rodriguez-Canales, J., Lazar, A. J., Wistuba, II, Baker, L. H., Maki, R. G., Reinke, D., Patel, S. (November 2017) Pembrolizumab in advanced soft-tissue sarcoma and bone sarcoma (SARC028): a multicentre, two-cohort, single-arm, open-label, phase 2 trial. Lancet Oncol, 18 (11). pp. 1493-1501. ISSN 1470-2045

Thompson, D., Morrice, N., Grant, L., Le Sommer, S., Lees, E. K., Tonks, N. K., Mody, N., Wilson, H. M., Delibegovic, M. (March 2017) Genetic deletion and pharmacological inhibition of macrophage protein tyrosine phosphatase 1B (PTP1B) improves global glucose and lipid homeostasis and protects against atherosclerotic plaque formation in mouse models of atherosclerosis. Diabetic Medicine, 34 (Supple). pp. 26-27. ISSN 0742-3071

Thomson, P., Duff, B., McCarthy, S., Ryan, N. M., Whalley, H. C., de la Bastide, M., Morris, S. W., McIntosh, A. M., Evans, K. L., Lawrie, S. M., Blackwood, D. H. R., McCombie, W. R., Porteous, D. J. (October 2017) CLINICAL AND GENETIC RE-EVALUATION OF THE SCOTTISH DISCI TRANSLOCATION FAMILY. European Neuropsychopharmacology, 27 (Supple). Meeting Abstract 37; S276-S277. ISSN 0924-977X

Tocilj, A., On, K. F., Yuan, Z., Sun, J., Elkayam, E., Li, H., Stillman, B., Joshua-Tor, L. (January 2017) Structure of the active form of human Origin Recognition Complex and its ATPase motor module. Elife, 6. ISSN 2050-084X (Electronic)2050-084X (Linking) (Public Dataset)

Tonelli, C., Chio, I. I. C., Tuveson, D. A. (September 2017) Transcriptional regulation by Nrf2. Antioxid Redox Signal. ISSN 1523-0864

Turco, G. M., Kajala, K., Kunde-Ramamoorthy, G., Ngan, C. Y., Olson, A., Deshphande, S., Tolkunov, D., Waring, B., Stelpflug, S., Klein, P., Schmutz, J., Kaeppler, S., Ware, D., Wei, C. L., Etchells, J. P., Brady, S. M. (May 2017) DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor. New Phytol, 214 (3). pp. 1213-1229. ISSN 0028-646x (Public Dataset)

Tuveson, D. (April 2017) Waging war against pancreatic cancer: an interview with David Tuveson. Dis Model Mech, 10 (4). pp. 353-357. ISSN 1754-8403

Tward, DJ, Lee, B, Mitra, P, Miller, MI (July 2017) Performance of image matching in the computational anatomy gateway: CPU and GPU implementations in opencl. In: PEARC17: Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact.

Tzelepis, K., Barbieri, I., Pandolfini, L., Shi, J., Robson, S. C., Migliori, V., Bannister, A. J., Han, N., De Braekeleer, E., Ponstingl, H., Vakoc, C. R., Vassiliou, G. S., Kouzarides, T. (June 2017) Mettl3 controls translation of target mRNAs by n6 methylation of adenosine residues in their coding sequence and constitutes a novel therapeutic vulnerability of acute myeloid leukaemia. Haematologica, 102 (Supple). pp. 154-155. ISSN 0390-6078

U

Underwood, Charles J., Henderson, Ian R., Martienssen, Robert A. (April 2017) Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology, 36. pp. 135-141. ISSN 1369-5266

V

Vakoc, C. R., Tuveson, D. A. (October 2017) Soils and Seeds That Initiate Pancreatic Cancer Metastasis. Cancer Discov, 7 (10). pp. 1067-1068. ISSN 2159-8274

Vakoc, C. R., Tuveson, D. A. (February 2017) Untangling the genetics from the epigenetics in pancreatic cancer metastasis. Nat Genet, 49 (3). pp. 323-324. ISSN 1061-4036

Valentino, Rita J, Guyenet, Patrice, Hou, Xun Helen, Herman, Melissa (November 2017) Central Network Dynamics Regulating Visceral and Humoral Functions. The Journal of Neuroscience, 37 (45). pp. 10848-10854. ISSN 0270-6474

Van Eck, J., Swartwood, K., Lemmon, Z. H., Dalrymple, J., Lippman, Z. B. (June 2017) Development of Agrobacterium-mediated Transformation of Physalis peruviana and Application of CRISPR/Cas9 Genome Editing. In Vitro Cellular & Developmental Biology-Animal, 53 (Supple). S34-S35. ISSN 1071-2690

Verleyen, Wim, Gillis, Jesse (October 2017) SAPLING: A TOOL FOR CUSTOMIZED NETWORK ANALYSIS FOCUSING ON PSYCHIATRIC GENETICS. In: 23rd Annual World Congress of Psychiatric Genetics (WCPG).

Vogt, D., Cho, K. K. A., Shelton, S. M., Paul, A., Huang, Z. J., Sohal, V. S., Rubenstein, J. L. R. (September 2017) Mouse Cntnap2 and Human CNTNAP2 ASD Alleles Cell Autonomously Regulate PV+ Cortical Interneurons. Cereb Cortex, 28 (11). pp. 3868-3879. ISSN 1047-3211

Vurture, G. W., Sedlazeck, F. J., Nattestad, M., Underwood, C. J., Fang, H., Gurtowski, J., Schatz, M. C. (July 2017) GenomeScope: Fast reference-free genome profiling from short reads. Bioinformatics, 33 (14). pp. 2202-2204. ISSN 1367-4803

W

Walker II, W. H., Borniger, J. C., Surbhi, . , Zalenski, A. A., Muscarella, S. L., Fitzgerald, J. A., Zhang, N., Gaudier-Diaz, M. M., DeVries, A. C. (August 2017) Mammary Tumors Induce Central Pro-inflammatory Cytokine Expression, but Not Behavioral Deficits in Balb/C Mice. Sci Rep, 7 (1). p. 8152. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Wear, E. E., Song, J., Zynda, G., LeBlanc, C., Lee, T. J., Mickelson-Young, L., Concia, L., Mulvaney, P., Szymanski, E. S., Allen, G. C., Martienssen, R., Vaughn, M. W., Hanley-Bowdoin, L., Thompson, W. (September 2017) Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays L.) root tips. Plant Cell, 29 (9). pp. 2126-49. ISSN 1040-4651

Wenda, J. M., Homolka, D., Yang, Z., Spinelli, P., Sachidanandam, R., Pandey, R. R., Pillai, R. S. (June 2017) Distinct Roles of RNA Helicases MVH and TDRD9 in PIWI Slicing-Triggered Mammalian piRNA Biogenesis and Function. Dev Cell, 41 (6). 623-637.e9. ISSN 1534-5807

Wigler, MH (January 2017) The ras system in yeasts. In: The ras Superfamily of GTPases. CRC Press, pp. 155-172. ISBN 9781138105126

Williams, J. J., Teal, T. K. (January 2017) A vision for collaborative training infrastructure for bioinformatics. Ann N Y Acad Sci, 1387 (1). pp. 54-60. ISSN 1749-6632 (Electronic)0077-8923 (Linking)

Williams, Jason J, Drew, Jennifer C, Galindo-Gonzalez, Sebastian, Robic, Srebrenka, Dinsdale, Elizabeth, Morgan, William, Triplett, Eric W, Burnette, James, Donovan, Samuel, Elgin, Sarah, Fowlks, Edison R, Goodman, Anya L, Grandgenett, Nealy F, Goller, Carlos, Hauser, Charles, Jungck, John R, Newman, Jeffrey D, Pearson, William, Ryder, Elizabeth, Wilson Sayres, Melissa A, Sierk, Michael, Smith, Todd, Tosado-Acevedo, Rafael, Tapprich, William, Tobin, Tammy C, Toro, Arlín, Welch, Lonnie, Wright, Robin, Ebenbach, David, McWilliams, Mindy, Rosenwald, Anne G, Pauley, Mark A (October 2017) Barriers to Integration of Bioinformatics into Undergraduate Life Sciences Education. BioRxiv. (Unpublished)

Willsey, A. J., Fernandez, T. V., Yu, D., King, R. A., Dietrich, A., Xing, J., Sanders, S. J., Mandell, J. D., Huang, A. Y., Richer, P., Smith, L., Dong, S., Samocha, K. E., Neale, B. M., Coppola, G., Mathews, C. A., Tischfield, J. A., Scharf, J. M., State, M. W., Heiman, G. A. (May 2017) De Novo Coding Variants Are Strongly Associated with Tourette Disorder. Neuron, 94 (3). 486-499.e9. ISSN 0896-6273

Wilson, C. D., Serrano, G. O., Koulakov, A. A., Rinberg, D. (November 2017) A primacy code for odor identity. Nat Commun, 8 (1). p. 1477. ISSN 2041-1723

Wilson, J., Turna, N. S., Banks, R., Pappin, D. J. C., Zougman, A. (August 2017) Clinical applications of universal S-Trap sample processing. Molecular & Cellular Proteomics, 16 (8; Sup). S56-S56. ISSN 1535-9476

Wilson Sayres, Melissa A, Hauser, Charles, Sierk, Michael, Robic, Srebrenka, Rosenwald, Anne G, Smith, Todd M, Triplett, Eric W, Williams, Jason J, Dinsdale, Elizabeth, Morgan, William, Burnette, James M, Donovan, Samuel S, Drew, Jennifer C, Elgin, Sarah CR, Fowlks, Edison R, Galindo-Gonzalez, Sebastian, Goodman, Anya L, Grandgenett, Neal F, Goller, Carlos C, Jungck, John, Newman, Jeffrey D, Pearson, William, Ryder, Elizabeth, Tosado-Acevedo, Rafael, Tapprich, William, Tobin, Tammy C, Toro-Martínez, Arlín, Welch, Lonnie R, Wright, Robin, Ebenbach, David, Olney, Kimberly C, McWilliams, Mindy, Pauley, Mark A (August 2017) Bioinformatics Core Competencies for Undergraduate Life Sciences Education. BioRxiv. (Unpublished)

Witkowski, J. A. (2017) Introduction to The Therapeutic Implications of Muscular Dystrophy Genomics. Wellcome Witnesses to Contemporary Medicine, 62. xv-xx.

Wu, Melody V., Tollkuhn, Jessica (July 2017) Estrogen receptor alpha is required in GABAergic, but not glutamatergic, neurons to masculinize behavior. Hormones and Behavior, 95. pp. 3-12. ISSN 0018-506X

Wu, Q., Hu, Y., Sprague, S. A., Kakeshpour, T., Park, J., Nakata, P. A., Cheng, N., Hirschi, K. D., White, F. F., Park, S. (September 2017) Expression of a monothiol glutaredoxin, AtGRXS17, in tomato (Solanum lycopersicum) enhances drought tolerance. Biochem Biophys Res Commun, 491 (4). pp. 1034-1039. ISSN 0006-291x

Wu, X., Wang, S. H., Sun, J., Krainer, A. R., Hua, Y., Prior, T. W. (April 2017) A-44G transition in SMN2 intron 6 protects patients with spinal muscular atrophy. Hum Mol Genet. ISSN 0964-6906

Wu, Melody, Tollkuhn, Jessica (March 2017) Estrogen receptor alpha is required in GABAergic, but not glutamatergic, neurons to masculinize the brain. BioRxiv. (Unpublished)

X

Xu, Y., Vakoc, C. R. (July 2017) Targeting Cancer Cells with BET Bromodomain Inhibitors. Cold Spring Harb Perspect Med, 7 (7). ISSN 2157-1422

Y

Yang, N., Xu, X. W., Wang, R. R., Peng, W. L., Cai, L., Song, J. M., Li, W., Luo, X., Niu, L., Wang, Y., Jin, M., Chen, L., Luo, J., Deng, M., Wang, L., Pan, Q., Liu, F., Jackson, D., Yang, X., Chen, L. L., Yan, J. (November 2017) Contributions of Zea mays subspecies mexicana haplotypes to modern maize. Nat Commun, 8 (1). p. 1874. ISSN 2041-1723

Ye, K., Iossifov, I., Levy, D., Yamrom, B., Buja, A., Krieger, A. M., Wigler, M. (July 2017) Measuring shared variants in cohorts of discordant siblings with applications to autism. Proc Natl Acad Sci U S A, 114 (27). pp. 7073-7076. ISSN 0027-8424

Yoshimi, Akihide, Lin, Kuan-Ting, Wiseman, Daniel, Intlekofer, Andrew M, Wang, Bo, Pastore, Alessandro, Rahman, Mohammad, Lee, Stanley Chun-Wei, Liu, Bo, Micol, Jean-Baptiste, De Botton, Stephane, Penard-Lacronique, Virginie, Shih, Alan H, Stein, Eytan M, Durham, Benjamin H, Inoue, Daichi, Zhang, Xiao Jing, Albrecht, Todd, Chung, Young Rock, Peng, Shouyong, Buonamici, Silvia, Palacino, James, Smith, Peter, Thompson, Craig B, Levine, Ross L, Wagner, Eric, Krainer, Adrian R, Abdel-Wahab, Omar (December 2017) Spliceosomal Dysfunction Is a Critical Mediator of IDH2 Mutant Leukemogenesis. In: 59th Annual Meeting of the American Society of Hematology.

Yu, K., Ahrens, S., Zhang, X., Schiff, H., Ramakrishnan, C., Fenno, L., Deisseroth, K., Zhao, F., Luo, M. H., Gong, L., He, M., Zhou, P., Paninski, L., Li, B. (December 2017) The central amygdala controls learning in the lateral amygdala. Nat Neurosci, 20 (12). pp. 1680-1685. ISSN 1097-6256

Yuan, Z., Riera, A., Bai, L., Sun, J., Nandi, S., Spanos, C., Chen, Z. A., Barbon, M., Rappsilber, J., Stillman, B., Speck, C., Li, H. (March 2017) Structural basis of Mcm2-7 replicative helicase loading by ORC-Cdc6 and Cdt1. Nat Struct Mol Biol, 24 (3). pp. 316-324. ISSN 1545-9985 (Public Dataset)

Z

Zhang, Bin, Mao, Yuntao S., Diermeier, Sarah D., Novikova, Irina V., Nawrocki, Eric P., Jones, Tom A., Lazar, Zsolt, Tung, Chang-Shung, Luo, Weijun, Eddy, Sean R., Sanbonmatsu, Karissa Y., Spector, David L. (2017) Identification and Characterization of a Class of MALAT1-like Genomic Loci. Cell Reports, 19 (8). pp. 1723-1738. ISSN 2211-1247 (Public Dataset)

Zhang, S., Fan, G., Hao, Y., Hammell, M., Wilkinson, J. E., Tonks, N. K. (October 2017) Suppression of protein tyrosine phosphatase N23 predisposes to breast tumorigenesis via activation of FYN kinase. Genes Dev, 31 (19). pp. 1939-57. ISSN 0890-9369

Zhang, B., Mao, Y. S., Diermeier, S. D., Novikova, I. V., Nawrocki, E. P., Jones, T. A., Lazar, Z., Tung, CS, Luo, W., Eddy, S. R., Sanbonmatsu, K. Y., Spector, D. L. (2017) Supplemental Dataset from Zhang, Bin, Mao, Yuntao S., Diermeier, Sarah D., Novikova, Irina V., Nawrocki, Eric P., Jones, Tom A., Lazar, Zsolt, Tung, Chang-Shung, Luo, Weijun, Eddy, Sean R., Sanbonmatsu, Karissa Y., Spector, David L. (2017) Identification and Characterization of a Class of MALAT1-like Genomic Loci. Cell Reports. [Dataset]

Zhao, X., Powers, S. (August 2017) New Views into the Genetic Landscape of Metastatic Breast Cancer. Cancer Cell, 32 (2). pp. 131-133. ISSN 15356108

Zhu, K., Liu, M., Fu, Z., Zhou, Z., Kong, Y., Liang, H., Lin, Z., Luo, J., Zheng, H., Wan, P., Zhang, J., Zen, K., Chen, J., Hu, F., Zhang, C. Y., Ren, J., Chen, X. (August 2017) Plant microRNAs in larval food regulate honeybee caste development. PLoS Genet, 13 (8). e1006946. ISSN 1553-7390

Ziolkowski, P. A., Underwood, C. J., Lambing, C., Martinez-Garcia, M., Lawrence, E. J., Ziolkowska, L., Griffin, C., Choi, K., Franklin, F. C., Martienssen, R. A., Henderson, I. R. (February 2017) Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination. Genes Dev, 31 (3). pp. 306-317. ISSN 0890-9369

This list was generated on Wed Oct 9 14:26:58 2024 EDT.