Items where Year is 2020

AACR Board of Directors (June 2020) AACR Calls on Congress to Take Immediate Action against COVID-19 and Protect Patients with Cancer during the Pandemic. Cancer Discovery, 10 (6). pp. 771-774. ISSN 2159-8274

Abel, Haley J, Larson, David E, Regier, Allison A, Chiang, Colby, Das, Indraniel, Kanchi, Krishna L, Layer, Ryan M, Neale, Benjamin M, Salerno, William J, Reeves, Catherine, Buyske, Steven, NHGRI Centers for Common Disease Genomics, Matise, Tara C, Muzny, Donna M, Zody, Michael C, Lander, Eric S, Dutcher, Susan K, Stitziel, Nathan O, Hall, Ira M (July 2020) Mapping and characterization of structural variation in 17,795 human genomes. Nature, 583 (7814). pp. 83-89. ISSN 0028-0836

Adrion, JR, Cole, C. B., Dukler, N., Galloway, JG, Gladstein, AL, Gower, G, Kyriazis, CC, Ragsdale, AP, Tsambos, G, Baumdicker, F, Carlson, J., Cartwright, R. A., Durvasula, A, Gronau, I., Kim, BY, McKenzie, P, Messer, PW, Noskova, E, Ortega-Del Vecchyo, D., Racimo, F, Struck, TJ, Gravel, S, Gutenkunst, R. N., Lohmueller, K. E., Ralph, PL, Schrider, D. R., Siepel, A., Kelleher, J. E., Kern, A. D. (June 2020) A Community-Maintained Standard Library of Population Genetic Models. Elife, 9. ISSN 2050-084X (Electronic)2050-084X (Linking)

Aganezov, S., Goodwin, S., Sherman, R. M., Sedlazeck, F. J., Arun, G., Bhatia, S., Lee, I., Kirsche, M., Wappel, R., Kramer, M., Kostroff, K., Spector, D. L., Timp, W., McCombie, W. R., Schatz, M. C. (September 2020) Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. Genome Res, 30 (9). pp. 1258-1273. ISSN 1088-9051 (Print)1088-9051

Aguirre-Chen, C., Stec, N., Ramos, O. M., Kim, N., Kramer, M., McCarthy, S., Gillis, J., McCombie, W. R., Hammell, C. M. (May 2020) A Caenorhabditis elegans Model for Integrating the Functions of Neuropsychiatric Risk Genes Identifies Components Required for Normal Dendritic Morphology. G3: Genes, Genomes, Genetics, 10 (5). pp. 1617-1628. ISSN 21601836

Al Abed, Y; Zhang, L (October 2020) Muscarinic acetylcholine receptor subtype 4 antagonists in the treatment of anemia. .

Alonge, M., Wang, X., Benoit, M., Soyk, S., Pereira, L., Zhang, L., Suresh, H., Ramakrishnan, S., Maumus, F., Ciren, D., Levy, Y., Harel, T. H., Shalev-Schlosser, G., Amsellem, Z., Razifard, H., Caicedo, A. L., Tieman, D. M., Klee, H., Kirsche, M., Aganezov, S., Ranallo-Benavidez, T. R., Lemmon, Z. H., Kim, J., Robitaille, G., Kramer, M., Goodwin, S., McCombie, W. R., Hutton, S., Van Eck, J., Gillis, J., Eshed, Y., Sedlazeck, F. J., van der Knaap, E., Schatz, M. C., Lippman, Z. B. (July 2020) Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato. Cell, 182 (1). 145-161.e23. ISSN 0092-8674 (Print)0092-8674

Amor, Corina, Feucht, Judith, Leibold, Josef, Ho, Yu-Jui, Zhu, Changyu, Alonso-Curbelo, Direna, Mansilla-Soto, Jorge, Boyer, Jacob A, Li, Xiang, Giavridis, Theodoros, Kulick, Amanda, Houlihan, Shauna, Peerschke, Ellinor, Friedman, Scott L, Ponomarev, Vladimir, Piersigilli, Alessandra, Sadelain, Michel, Lowe, Scott W (July 2020) Senolytic CAR T cells reverse senescence-associated pathologies. Nature, 583 (7814). pp. 127-132. ISSN 1476-4687

Aron, A.R., Ivry, R.B., Jeffery, K.J., Poldrack, R.A., Schmidt, R.A., Summerfield, C., Urai, A. E. (April 2020) How Can Neuroscientists Respond to the Climate Emergency? Neuron, 106 (1). pp. 17-20. ISSN 0896-6273

Arun, G., Aggarwal, D., Spector, D. L. (June 2020) MALAT1 Long Non-Coding RNA: Functional Implications. Noncoding RNA, 6 (2). E22.

Azevedo, Hatylas, Ferreira, Marcos, Mascarello, Alessandra, Osten, Pavel, Guimarães, Cristiano Ruch Werneck (November 2020) Brain-wide mapping of c-fos expression in the single prolonged stress model and the effects of pretreatment with ACH-000029 or prazosin. Neurobiology of Stress, 13. p. 100226. ISSN 2352-2895

BRAIN Initiative Cell Census Network (BICCN), Adkins, Ricky, Aldridge, Andrew, Allen, Shona, Ament, Seth, An, Xu, Armand, Ethan, Ascoli, Giorgio, Bakken, Trygve, Bandrowski, Anita, Banerjee, Samik, Barkas, Nikolaos, Bartlett, Anna, Bateup, Helen, Behrens, Margarita, Berens, Philipp, Berg, Jim, Bernabucci, Matteo, Bernaerts, Yves, Bertagnolli, Darren, Biancalani, Tommaso, Boggeman, Lara, Booeshaghi, Sina, Bowman, Ian, Bravo, Héctor Corrada, Cadwell, Cathryn René, Callaway, Edward, Carlin, Benjamin, O'Connor, Carolyn, Carter, Robert, Casper, Tamara, Castanon, Rosa, Castro, Jesus Ramon, Chance, Rebecca, Chatterjee, Apaala, Chen, Huaming, Chun, Jerold, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, D'Orazi, Florence, Daigle, Tanya, Dalley, Rachel, Dee, Nick, Degatano, Kylee, Dichter, Benjamin, Diep, Dinh, Ding, Liya, Ding, Song-Lin, Dominguez, Bertha, Dong, Hong-Wei, Dong, Weixiu, Dougherty, Elizabeth, Dudoit, Sandrine, Ecker, Joseph, Eichhorn, Stephen, Fang, Rongxin, Felix, Victor, Feng, Guoping, Feng, Zhao, Fischer, Stephan, Fitzpatrick, Conor, Fong, Olivia, Foster, Nicholas, Galbavy, William, Gee, James, Ghosh, Satrajit, Giglio, Michelle, Gillespie, Thomas, Gillis, Jesse, Goldman, Melissa, Goldy, Jeff, Gong, Hui, Gou, Lin, Grauer, Michael, Halchenko, Yaroslav, Harris, Julie, Hartmanis, Leonard, Hatfield, Joshua, Hawrylycz, Mike, Helba, Brian, Herb, Brian, Hertzano, Ronna, Hintiryan, Houri, Hirokawa, Karla, Hockemeyer, Dirk, Hodge, Rebecca, Hood, Greg, Horwitz, Gregory, Hou, Xiaomeng, Hu, Lijuan, Hu, Qiwen, Huang, Josh, Huo, Bingxing, Ito-Cole, Tony, Jacobs, Matthew, Jia, Xueyan, Jiang, Shengdian, Jiang, Tao, Jiang, Xiaolong, Jin, Xin, Jorstad, Nikolas, Kalmbach, Brian, Kancherla, Jayaram, Keene, Dirk, Kelly, Kathleen, Khajouei, Farzaneh, Kharchenko, Peter, Kim, Gukhan, Ko, Andrew, Kobak, Dmitry, Konwar, Kishori, Kramer, Daniel, Krienen, Fenna, Kroll, Matthew, Kuang, Xiuli, Kuo, Hsien-Chi, Lake, Blue, Larsen, Rachael, Lathia, Kanan, Laturnus, Sophie, Lee, Angus, Lee, Cheng-Ta, Lee, Kuo-Fen, Lein, Ed, Lesnar, Phil, Li, Anan, Li, Xiangning, Li, Xu, Li, Yang Eric, Li, Yaoyao, Li, Yuanyuan, Lim, Byungkook, Linnarsson, Sten, Liu, Christine, Liu, Hanqing, Liu, Lijuan, Lucero, Jacinta, Luo, Chongyuan, Luo, Qingming, Macosko, Evan, Mahurkar, Anup, Martone, Maryann, Matho, Katherine, McCarroll, Steven, McCracken, Carrie, McMillen, Delissa, Miranda, Elanine, Mitra, Partha, Miyazaki, Paula Assakura, Mizrachi, Judith, Mok, Stephanie, Mukamel, Eran, Mulherkar, Shalaka, Nadaf, Naeem, Naeemi, Maitham, Narasimhan, Arun, Nery, Joseph, Ng, Lydia, Ngai, John, Nguyen, Thuc Nghi, Nickel, Lance, Nicovich, Philip, Niu, Sheng-Yong, Ntranos, Vasilis, Nunn, Michael, Olley, Dustin, Orvis, Joshua, Osteen, Julia, Osten, Pavel, Owen, Scott, Pachter, Lior, Palaniswamy, Ramesh, Palmer, Carter, Pang, Yan, Peng, Hanchuan, Pham, Thanh, Pinto-Duarte, Antonio, Plongthongkum, Nongluk, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Qu, Lei, Rashid, Mohammad, Reed, Nora, Regev, Aviv, Ren, Bing, Ren, Miao, Rimorin, Christine, Risso, Davide, Rivkin, Angeline, Muñoz-Castañeda, Rodrigo, Romanow, William, Ropelewski, Alexander, Roux de Bézieux, Hector, Ruan, Zongcai, Sandberg, Rickard, Savoia, Steven, Scala, Federico, Schor, Michael, Shen, Elise, Siletti, Kimberly, Smith, Jared, Smith, Kimberly, Somasundaram, Saroja, Song, Yuanyuan, Sorensen, Staci, Stafford, David, Street, Kelly, Sulc, Josef, Sunkin, Susan, Svensson, Valentine, Tan, Pengcheng, Tan, Zheng Huan, Tasic, Bosiljka, Thompson, Carol, Tian, Wei, Tickle, Timothy, Tieu, Michael, Ting, Jonathan, Tolias, Andreas Savas, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Van den Berge, Koen, van Velthoven, Cindy TJ, Vanderburg, Charles, Veldman, Matthew, Vu, Minh, Wakeman, Wayne, Wang, Peng, Wang, Quanxin, Wang, Xinxin, Wang, Yimin, Wang, Yun, Welch, Joshua, White, Owen, Williams, Elora, Xie, Fangming, Xie, Peng, Xiong, Feng, Yang, William, Yanny, Anna Marie, Yao, Zizhen, Yin, Lulu, Yu, Yang, Yuan, Jing, Z, Hongkui (October 2020) A multimodal cell census and atlas of the mammalian primary motor cortex. BioRxiv. (Unpublished)

Bakken, Trygve, Jorstad, Nikolas, Hu, Qiwen, Lake, Blue, Tian, Wei, Kalmbach, Brian, Crow, Megan, Hodge, Rebecca, Krienen, Fenna, Sorensen, Staci, Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian, Aldridge, Andrew, Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Castanon, Rosa, Crichton, Kirsten, Daigle, Tanya, Dalley, Rachel, Dee, Nick, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas, Herb, Brian, Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, van Lew, Baldur, Li, Yang Eric, Liu, Christine, Liu, Hanqing, Lucero, Jacinta, Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy, Moussa, Marmar, Nery, Joseph, Nicovich, Philip, Orvis, Joshua, Osteen, Julia, Owen, Scott, Palmer, Carter, Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora, Rimorin, Christine, Rivkin, Angeline, Romanow, William, Sedeño-Cortés, Adriana, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth, Behrens, Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick, Höllt, Thomas, Horwitz, Gregory, Keene, Dirk, Kharchenko, Peter, Ko, Andrew, Lelieveldt, Boudewijn, Luo, Chongyuan, Mukamel, Eran, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard, Smith, Kimberly, Spain, William, White, Owen, Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan, McCarroll, Steven, Ting, Jonathan, Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph, Linnarsson, Sten, Lein, Ed (April 2020) Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse. BioRxiv. (Unpublished)

Ballouz, Sara, Mangala, Melissa M, Perry, Matthew D, Heitmann, Stewart, Gillis, Jesse A, Hill, Adam P, Vandenberg, Jamie I (October 2020) Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events. Cardiovascular Research. ISSN 0008-6363

Banerjee, Arkarup, Chae, Honggoo, Albeanu, D. F. (September 2020) A non-canonical feedforward pathway for computing odor identity. bioRxiv. (Unpublished)

Banerjee, Samik, Magee, Lucas, Wang, Dingkang, Li, Xu, Huo, Bing-Xing, Jayakumar, Jaikishan, Matho, Katherine, Lin, Meng-Kuan, Ram, Keerthi, Sivaprakasam, Mohanasankar, Huang, Josh, Wang, Yusu, Mitra, Partha P (October 2020) Semantic segmentation of microscopic neuroanatomical data by combining topological priors with encoder-decoder deep networks. Nature Machine Intelligence, 2 (10). 585-+. ISSN 2522-5839

Barnes, B.J., Adrover, J.M., Baxter-Stoltzfus, A., Borczuk, A., Cools-Lartigue, J., Crawford, J.M., DaBler-Plenker, J., Guerci, P., Huynh, C., Knight, J.S., Loda, M., Looney, M.R., McAllister, F., Rayes, R., Renaud, S., Rousseau, S., Salvatore, S., Schwartz, R.E., Spicer, J.D., Yost, C.C., Weber, A., Zuo, Y., Egeblad, M. (June 2020) Targeting Potential Drivers of COVID-19: Neutrophil Extracellular Traps. J Exp Med, 217 (6). e20200652. ISSN 1540-9538

Barth, N. D., Subiros-Funosas, R., Mendive-Tapia, L., Duffin, R., Shields, M. A., Cartwright, J. A., Henriques, S. T., Sot, J., Goñi, F. M., Lavilla, R., Marwick, J. A., Vermeren, S., Rossi, A. G., Egeblad, M., Dransfield, I., Vendrell, M. (August 2020) A fluorogenic cyclic peptide for imaging and quantification of drug-induced apoptosis. Nat Commun, 11 (1). p. 4027. ISSN 2041-1723

Baslan, T., Kendall, J., Volyanskyy, K., McNamara, K., Cox, H., D'Italia, S., Ambrosio, F., Riggs, M., Rodgers, L., Leotta, A., Song, J., Mao, Y., Wu, J., Shah, R., Gularte-Merida, R., Chadalavada, K., Nanjangud, G., Varadan, V., Gordon, A., Curtis, C., Krasnitz, A., Dimitrova, N., Harris, L., Wigler, M., Hicks, J. (May 2020) Novel Insights Into Breast Cancer Copy Number Genetic Heterogeneity Revealed by Single-Cell Genome Sequencing. Elife, 9. e51480. ISSN 2050-084X

Bateni, Sarah B, Johns, Alexandra J, Gingrich, Alicia A, Gholami, Sepideh, Bold, Richard J, Canter, Robert J, Kirane, Amanda R (May 2020) Elderly Age Is Associated With More Conservative Treatment of Invasive Melanoma. Anticancer Research: international journal of cancer research and treatment, 40 (5). pp. 2895-2903. ISSN 0250-7005

Baum, Alina, Ajithdoss, Dharani, Copin, Richard, Zhou, Anbo, Lanza, Kathryn, Negron, Nicole, Ni, Min, Wei, Yi, Mohammadi, Kusha, Musser, Bret, Atwal, Gurinder S, Oyejide, Adelekan, Goez-Gazi, Yenny, Dutton, John, Clemmons, Elizabeth, Staples, Hilary M, Bartley, Carmen, Klaffke, Benjamin, Alfson, Kendra, Gazi, Michal, Gonzalez, Olga, Dick, Edward, Carrion, Ricardo, Pessaint, Laurent, Porto, Maciel, Cook, Anthony, Brown, Renita, Ali, Vaneesha, Greenhouse, Jack, Taylor, Tammy, Andersen, Hanne, Lewis, Mark G, Stahl, Neil, Murphy, Andrew J, Yancopoulos, George D, Kyratsous, Christos A (November 2020) REGN-COV2 antibodies prevent and treat SARS-CoV-2 infection in rhesus macaques and hamsters. Science, 370 (6520). pp. 1110-1115. ISSN 0036-8075

Baum, Alina, Fulton, Benjamin O, Wloga, Elzbieta, Copin, Richard, Pascal, Kristen E, Russo, Vincenzo, Giordano, Stephanie, Lanza, Kathryn, Negron, Nicole, Ni, Min, Wei, Yi, Atwal, Gurinder S, Murphy, Andrew J, Stahl, Neil, Yancopoulos, George D, Kyratsous, Christos A (August 2020) Antibody cocktail to SARS-CoV-2 spike protein prevents rapid mutational escape seen with individual antibodies. Science, 369 (6506). pp. 1014-1018. ISSN 0036-8075

Bayer, P. E., Golicz, A. A., Scheben, A., Batley, J., Edwards, D. (August 2020) Plant pan-genomes are the new reference. Nat Plants, 6 (8). pp. 914-920. ISSN 2055-0278

Bencze, G., Bencze, S., Rivera, K. D., Watson, J. D., Orfi, L., Tonks, N. K., Pappin, D. J. (August 2020) Mito-oncology agent: fermented extract suppresses the Warburg effect, restores oxidative mitochondrial activity, and inhibits in vivo tumor growth. Sci Rep, 10 (1). p. 14174. ISSN 2045-2322

Benitez, Asiel A, Khalil-Agüero, Sara, Nandakumar, Anjali, Gupta, Namita T, Zhang, Wen, Atwal, Gurinder S, Murphy, Andrew J, Sleeman, Matthew A, Haxhinasto, Sokol (July 2020) Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses. Communications Biology, 3 (1). p. 355. ISSN 2399-3642

Bennett, S, Søreide, K, Gholami, S, Pessaux, P, Teh, C, Segelov, E, Kennecke, H, Prenen, H, Myrehaug, S, Callegaro, D, Hallet, J (October 2020) Strategies for the delay of surgery in the management of resectable hepatobiliary malignancies during the COVID-19 pandemic. Current Oncology, 27 (5). e501-e511. ISSN 1198-0052

Benoit, M. (April 2020) Glyphosate Resistance Decoded: The Reference Sequence of the Extrachromosomal DNA Replicon in Amaranth. Plant Cell, 32 (7). pp. 2059-2060. ISSN 1040-4651

Benoit, M. (August 2020) The Great Escape: How a Plant DNA Virus Hijacks an Imprinted Host Gene to Avoid Silencing. Plant Cell, 32 (10). pp. 3051-3052. ISSN 1040-4651

Benoit, M. (April 2020) On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis. Plant Cell. ISSN 1040-4651

Benoit, M. (May 2020) Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves. Plant Cell. ISSN 1040-4651

Benoit, Matthias (December 2020) Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean. The Plant Cell, 32 (12). pp. 3646-3647. ISSN 1040-4651

Bernards, René, Jaffee, Elizabeth, Joyce, Johanna A, Lowe, Scott W, Mardis, Elaine R, Morrison, Sean J, Polyak, Kornelia, Sears, Cynthia L, Vousden, Karen H, Zhang, Zemin (January 2020) A roadmap for the next decade in cancer research. Nature Cancer, 1 (1). pp. 12-17. ISSN 2662-1347

Beyaz, S., Roper, J., Bauer-Rowe, K. E., Xifaras, M. E., Ergin, I., Dohnalova, L., Biton, M., Shekar, K., Mou, H. W., Eskiocak, O., Ozata, D., Papciak, K., Chung, C., Almeqdadi, M., Fein, M., Valle-Encinas, E., Erdemir, A., Dogum, K, Garipcan, A., Meyer, H., Fox, J.G., Elinav, E., Kucukural, A., Kumar, P., McAleer, J., Thaiss, C.A., Regev, A., Orkin, S. H., Yilmaz, O. H. (September 2020) Dietary suppression of MHC-II expression in intestinal stem cells enhances intestinal tumorigenesis. bioRxiv. (Unpublished)

Biasci, D., Smoragiewicz, M., Connell, C. M., Wang, Z., Gao, Y., Thaventhiran, J. E., Basu, B., Magiera, L., Johnson, I. T., Bax, L., Gopinathan, A., Isherwood, C., Gallagher, F., Pawula, M., Hudecova, I., Gale, D., Rosenfeld, N., Barmpounakis, P., Popa, E. C., Brais, R., Godfrey, E., Mir, F., Richards, F., Fearon, D. T., Janowitz, T., Jodrell, D. (July 2020) CXCR4 inhibition in human pancreatic and colorectal cancers induces an integrated immune response. medRxiv. (Unpublished)

Biasci, D., Smoragiewicz, M., Connell, C. M., Wang, Z., Gao, Y., Thaventhiran, J. E. D., Basu, B., Magiera, L., Johnson, T. I., Bax, L., Gopinathan, A., Isherwood, C., Gallagher, F. A., Pawula, M., Hudecova, I., Gale, D., Rosenfeld, N., Barmpounakis, P., Popa, E. C., Brais, R., Godfrey, E., Mir, F., Richards, F. M., Fearon, D. T., Janowitz, T., Jodrell, D. I. (November 2020) CXCR4 inhibition in human pancreatic and colorectal cancers induces an integrated immune response. Proc Natl Acad Sci U S A, 117 (46). pp. 28960-28970. ISSN 0027-8424 (Print)0027-8424

Bibel, Brianna, Elkayam, Elad, Joshua-Tor, Leemor (April 2020) Mechanisms of Phosphorylation-Mediated Regulation of the RNAi Effector Protein Argonaute 2. In: Annual Meeting on Experimental Biology.

Bonda, David, Wulf, Michael, Kepecs, Adam (April 2020) A Functional Circuit for Executive Control. In: Annual Scientific Meeting of the American-Association-of-Neurological-Surgeons (AANS).

Bonda, David, Wulf, Michael, Kepecs, Adam (December 2020) A Functional Circuit for Executive Control. In: Congress of Neurological Surgeons 2020.

Borg, M, Jacob, Y., Susaki, D., LeBlanc, C., Buendia, D, Axelsson, E., Kawashima, T., Voigt, P., Boavida, L. C., Becker, J. D., Higashiyama, T., Martienssen, R. A., Berger, F. (June 2020) Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology, 22 (6). p. 621. ISSN 1465-7392

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdžić, M., Berube, B., Brooks, A., Thompson, W. F., Hanley-Bowdoin, L., Martienssen, R. A. (November 2020) Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31 (3). pp. 591-600. ISSN 0960-9822

Borniger, JC, Nevárez, N (January 2020) Lateral Hypothalamic Control of Sleep in the Context of Cancer. In: Neurological Modulation of Sleep: Mechanisms and Function of Sleep Health. Elsevier, pp. 111-124. ISBN 9780128166581

Bradley, Sherille D, Talukder, Amjad H, Lai, Ivy, Davis, Rebecca, Alvarez, Hector, Tiriac, Herve, Zhang, Minying, Chiu, Yulun, Melendez, Brenda, Jackson, Kyle R, Katailiha, Arjun, Sonnemann, Heather M, Li, Fenge, Kang, Yaan, Qiao, Na, Pan, Bih-Fang, Lorenzi, Philip L, Hurd, Mark, Mittendorf, Elizabeth A, Peterson, Christine B, Javle, Milind, Bristow, Christopher, Kim, Michael, Tuveson, David A, Hawke, David, Kopetz, Scott, Wolff, Robert A, Hwu, Patrick, Maitra, Anirban, Roszik, Jason, Yee, Cassian, Lizée, Gregory (October 2020) Vestigial-like 1 is a shared targetable cancer-placenta antigen expressed by pancreatic and basal-like breast cancers. Nature Communications, 11 (1). p. 5332. ISSN 2041-1723

Breschi, A., Muñoz-Aguirre, M., Wucher, V., Davis, C. A., Garrido-Martín, D., Djebali, S., Gillis, J., Pervouchine, D. D., Vlasova, A., Dobin, A., Zaleski, C., Drenkow, J., Danyko, C., Scavelli, A., Reverter, F., Snyder, M. P., Gingeras, T. R., Guigó, R. (July 2020) A limited set of transcriptional programs define major cell types. Genome Res, 30 (7). pp. 1047-1059. ISSN 1088-9051 (Print)1088-9051

Breschi, Alessandra, Muñoz-Aguirre, Manuel, Wucher, Valentin, Davis, Carrie, Garrido-Martín, Diego, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri, Vlasova, Anna, Dobin, Alexander, Zaleski, Chris, Drenkow, Jorg, Danyko, Cassidy, Scavelli, Alexandra, Reverter, Ferran, Snyder, Michael, Gingeras, Thomas, Guigó, Roderic (March 2020) A limited set of transcriptional programs define major cell types. BioRxiv. (Unpublished)

Brouzes, E., Li, S. (December 2020) Editorial for the Special Issue on Droplet Microfluidics. Micromachines (Basel), 11 (12). p. 1086. ISSN 2072-666X (Print)2072-666x

Browning, Michael, Carter, Cameron S, Chatham, Christopher, Den Ouden, Hanneke, Gillan, Claire M, Baker, Justin T, Chekroud, Adam M, Cools, Roshan, Dayan, Peter, Gold, James, Goldstein, Rita Z, Hartley, Catherine A, Kepecs, Adam, Lawson, Rebecca P, Mourao-Miranda, Janaina, Phillips, Mary L, Pizzagalli, Diego A, Powers, Albert, Rindskopf, David, Roiser, Jonathan P, Schmack, Katharina, Schiller, Daniela, Sebold, Miriam, Stephan, Klaas Enno, Frank, Michael J, Huys, Quentin, Paulus, Martin (July 2020) Realizing the Clinical Potential of Computational Psychiatry: Report From the Banbury Center Meeting, February 2019. Biological Psychiatry, 88 (2). e5-e10. ISSN 0006-3223

Burko, Y., Seluzicki, A., Zander, M., Pedmale, U., Ecker, J.R., Chory, J. (February 2020) Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism. Plant Cell. ISSN 1040-4651

Cable, Jennifer, Greenbaum, Benjamin, Pe'er, Dana, Bollard, Catherine M, Bruni, Sofia, Griffin, Matthew E, Allison, James P, Wu, Catherine J, Subudhi, Sumit K, Mardis, Elaine R, Brentjens, Renier, Sosman, Jeffry A, Cemerski, Saso, Zavitsanou, Anastasia-Maria, Proia, Theresa, Egeblad, Mikala, Nolan, Garry, Goswami, Sangeeta, Spranger, Stefani, Mackall, Crystal L (November 2020) Frontiers in cancer immunotherapy-a symposium report. Annals of the New York Academy of Sciences. ISSN 0077-8923

Campbell, P. J., Getz, G., Korbel, J. O., Stuart, J. M., Jennings, J. L., Stein, L. D., Perry, M. D., Nahal-Bose, H. K., Ouellette, B. F. F., Li, C. H., Rheinbay, E., Nielsen, G. P., Sgroi, D. C., Wu, C. L., Faquin, W. C., Deshpande, V., Boutros, P. C., Lazar, A. J., Hoadley, K. A., Louis, D. N., Dursi, L. J., Yung, C. K., Bailey, M. H., Saksena, G., Raine, K. M., Buchhalter, I., Kleinheinz, K., Schlesner, M., Zhang, J., Wang, W., Wheeler, D. A., Ding, L., Simpson, J. T., O’Connor, B. D., Yakneen, S., Ellrott, K., Miyoshi, N., Butler, A. P., Royo, R., Shorser, S. I., Vazquez, M., Rausch, T., Tiao, G., Waszak, S. M., Rodriguez-Martin, B., Shringarpure, S., Wu, D. Y., Demidov, G. M., Delaneau, O., Hayashi, S., Imoto, S., Habermann, N., Segre, A. V., Garrison, E., Cafferkey, A., Alvarez, E. G., Heredia-Genestar, J. M., Muyas, F., Drechsel, O., Bruzos, A. L., Temes, J., Zamora, J., Baez-Ortega, A., Kim, H. L., Mashl, R. J., Ye, K., DiBiase, A., Huang, K. L., Letunic, I., McLellan, M. D., Newhouse, S. J., Shmaya, T., Kumar, S., Wedge, D. C., Wright, M. H., Yellapantula, V. D., Gerstein, M., Khurana, E., Marques-Bonet, T., Navarro, A., Bustamante, C. D., Siebert, R., Nakagawa, H., Easton, D. F., Ossowski, S., Tubio, J. M. C., De La Vega, F. M., Estivill, X., Yuen, D., Mihaiescu, G. L., Omberg, L., Ferretti, V., Sabarinathan, R., Pich, O., Gonzalez-Perez, A., Taylor-Weiner, A., Fittall, M. W., Demeulemeester, J., Tarabichi, M., Roberts, N. D., Van Loo, P., Cortés-Ciriano, I., Urban, L., Park, P., Zhu, B., Pitkänen, E., Li, Y., Saini, N., Klimczak, L. J., Weischenfeldt, J., Sidiropoulos, N., Alexandrov, L. B., Rabionet, R., Escaramis, G., Bosio, M., Holik, A. Z., Susak, H., Prasad, A., Erkek, S., Calabrese, C., Raeder, B., Harrington, E., Mayes, S., Turner, D., Juul, S., Roberts, S. A., Song, L., Koster, R., Mirabello, L., Hua, X., Tanskanen, T. J., Tojo, M., Chen, J., Aaltonen, L. A., Rätsch, G., Schwarz, R. F., Butte, A. J., Brazma, A., Chanock, S. J., Chatterjee, N., Stegle, O., Harismendy, O., Bova, G. S., Gordenin, D. A., Haan, D., Sieverling, L., Feuerbach, L., Chalmers, D., Joly, Y., Knoppers, B., Molnár-Gábor, F., Phillips, M., Thorogood, A., Townend, D., Goldman, M., Fonseca, N. A., Xiang, Q., Craft, B., Piñeiro-Yáñez, E., Muñoz, A., Petryszak, R., Füllgrabe, A., Al-Shahrour, F., Keays, M., Haussler, D., Weinstein, J., Huber, W., Valencia, A., Papatheodorou, I., Zhu, J., Fan, Y., Torrents, D., Bieg, M., Chen, K., Chong, Z., Cibulskis, K., Eils, R., Fulton, R. S., Gelpi, J. L., Gonzalez, S., Gut, I. G., Hach, F., Heinold, M., Hu, T., Huang, V., Hutter, B., Jäger, N., Jung, J., Kumar, Y., Lalansingh, C., Leshchiner, I., Livitz, D., Ma, E. Z., Maruvka, Y. E., Milovanovic, A., Nielsen, M. M., Paramasivam, N., Pedersen, J. S., Puiggròs, M., Sahinalp, S. C., Sarrafi, I., Stewart, C., Stobbe, M. D., Wala, J. A., Wang, J., Wendl, M., Werner, J., Wu, Z., Xue, H., Yamaguchi, T. N., Yellapantula, V., Davis-Dusenbery, B. N., Grossman, R. L., Kim, Y., Heinold, M. C., Hinton, J., Jones, D. R., Menzies, A., Stebbings, L., Hess, J. M., Rosenberg, M., Dunford, A. J., Gupta, M., Imielinski, M., Meyerson, M., Beroukhim, R., Reimand, J., Dhingra, P., Favero, F., Dentro, S., Wintersinger, J., Rudneva, V., Park, J. W., Hong, E. P., Heo, S. G., Kahles, A., Lehmann, K. V., Soulette, C. M., Shiraishi, Y., Liu, F., He, Y., Demircioğlu, D., Davidson, N. R., Greger, L., Li, S., Liu, D., Stark, S. G., Zhang, F., Amin, S. B., Bailey, P., Chateigner, A., Frenkel-Morgenstern, M., Hou, Y., Huska, M. R., Kilpinen, H., Lamaze, F. C., Li, C., Li, X., Li, X., Liu, X., Marin, M. G., Markowski, J., Nandi, T., Ojesina, A. I., Pan-Hammarström, Q., Park, P. J., Pedamallu, C. S., Su, H., Tan, P., Teh, B. T., Wang, J., Xiong, H., Ye, C., Yung, C., Zhang, X., Zheng, L., Zhu, S., Awadalla, P., Creighton, C. J., Wu, K., Yang, H., Göke, J., Zhang, Z., Brooks, A. N., Fittall, M. W., Martincorena, I., Rubio-Perez, C., Juul, M., Schumacher, S., Shapira, O., Tamborero, D., Mularoni, L., Hornshøj, H., Deu-Pons, J., Muiños, F., Bertl, J., Guo, Q., Gonzalez-Perez, A., Xiang, Q., Bazant, W., Barrera, E., Al-Sedairy, S. T., Aretz, A., Bell, C., Betancourt, M., Buchholz, C., Calvo, F., Chomienne, C., Dunn, M., Edmonds, S., Green, E., Gupta, S., Hutter, C. M., Jegalian, K., Jones, N., Lu, Y., Nakagama, H., Nettekoven, G., Planko, L., Scott, D., Shibata, T., Shimizu, K., Stratton, M. R., Yugawa, T., Tortora, G., VijayRaghavan, K., Zenklusen, J. C., Townend, D., Knoppers, B. M., Aminou, B., Bartolome, J., Boroevich, K. A., Boyce, R., Buchanan, A., Byrne, N. J., Chen, Z., Cho, S., Choi, W., Clapham, P., Dow, M. T., Dursi, L. J., Eils, J., Farcas, C., Fayzullaev, N., Flicek, P., Heath, A. P., Hofmann, O., Hong, J. H., Hudson, T. J., Hübschmann, D., Ivkovic, S., Jeon, S. H., Jiao, W., Kabbe, R., Kahles, A., Kerssemakers, J. N. A., Kim, H., Kim, J., Koscher, M., Koures, A., Kovacevic, M., Lawerenz, C., Liu, J., Mijalkovic, S., Mijalkovic-Lazic, A. M., Miyano, S., Nastic, M., Nicholson, J., Ocana, D., Ohi, K., Ohno-Machado, L., Pihl, T. D., Prinz, M., Radovic, P., Short, C., Sofia, H. J., Spring, J., Struck, A. J., Tijanic, N., Vicente, D., Wang, Z., Williams, A., Woo, Y., Wright, A. J., Yang, L., Hamilton, M. P., Johnson, T. A., Kahraman, A., Kellis, M., Polak, P., Sallari, R., Sinnott-Armstrong, N., von Mering, C., Beltran, S., Gerhard, D. S., Gut, M., Trotta, J. R., Whalley, J. P., Niu, B., Espiritu, S. M. G., Gao, S., Huang, Y., Lalansingh, C. M., Teague, J. W., Wendl, M. C., Abascal, F., Bader, G. D., Bandopadhayay, P., Barenboim, J., Brunak, S., Carlevaro-Fita, J., Chakravarty, D., Chan, C. W. Y., Choi, J. K., Diamanti, K., Fink, J. L., Frigola, J., Gambacorti-Passerini, C., Garsed, D. W., Haradhvala, N. J., Harmanci, A. O., Helmy, M., Herrmann, C., Hobolth, A., Hodzic, E., Hong, C., Isaev, K., Izarzugaza, J. M. G., Johnson, R., Juul, R. I., Kim, J., Kim, J. K., Jan, Komorowski, Lanzós, A., Larsson, E., Lee, D., Li, S., Li, X., Lin, Z., Liu, E. M., Lochovsky, L., Lou, S., Madsen, T., Marchal, K., Martinez-Fundichely, A., McGillivray, P. D., Meyerson, W., Paczkowska, M., Park, K., Park, K., Pons, T., Pulido-Tamayo, S., Reyes-Salazar, I., Reyna, M. A., Rubin, M. A., Salichos, L., Sander, C., Schumacher, S. E., Shackleton, M., Shen, C., Shrestha, R., Shuai, S., Tsunoda, T., Umer, H. M., Uusküla-Reimand, L., Verbeke, L. P. C., Wadelius, C., Wadi, L., Warrell, J., Wu, G., Yu, J., Zhang, J., Zhang, X., Zhang, Y., Zhao, Z., Zou, L., Lawrence, M. S., Raphael, B. J., Bailey, P. J., Craft, D., Goldman, M. J., Aburatani, H., Binder, H., Dinh, H. Q., Heath, S. C., Hoffmann, S., Imbusch, C. D., Kretzmer, H., Laird, P. W., Martin-Subero, J. I., Nagae, G., Shen, H., Wang, Q., Weichenhan, D., Zhou, W., Berman, B. P., Brors, B., Plass, C., Akdemir, K. C., Bowtell, D. D. L., Burns, K. H., Busanovich, J., Chan, K., Dueso-Barroso, A., Edwards, P. A., Etemadmoghadam, D., Haber, J. E., Jones, D. T. W., Ju, Y. S., Kazanov, M. D., Koh, Y., Kumar, K., Lee, E. A., Lee, J. J. K., Lynch, A. G., Macintyre, G., Markowetz, F., Navarro, F. C. P., Pearson, J. V., Rippe, K., Scully, R., Villasante, I., Waddell, N., Yang, L., Yao, X., Yoon, S. S., Zhang, C. Z., Bergstrom, E. N., Boot, A., Covington, K., Fujimoto, A., Huang, M. N., Islam, S. M. A., McPherson, J. R., Morganella, S., Mustonen, V., Ng, A. W. T., Prokopec, S. D., Vázquez-García, I., Wu, Y., Yousif, F., Yu, W., Rozen, S. G., Rudneva, V. A., Shringarpure, S. S., Turner, D. J., Xia, T., Atwal, G., Chang, D. K., Cooke, S. L., Faltas, B. M., Haider, S., Kaiser, V. B., Karlić, R., Kato, M., Kübler, K., Margolin, A., Martin, S., Nik-Zainal, S., P’ng, C., Semple, C. A., Smith, J., Sun, R. X., Thai, K., Wright, D. W., Yuan, K., Biankin, A. V., Garraway, L., Grimmond, S. M., Adams, D. J., Anur, P., Cao, S., Christie, E. L., Cmero, M., Cun, Y., Dawson, K. J., Dentro, S. C., Deshwar, A. G., Donmez, N., Drews, R. M., Gerstung, M., Ha, G., Haase, K., Jerman, L., Ji, Y., Jolly, C., Lee, J., Lee-Six, H., Malikic, S., Mitchell, T. J., Morris, Q. D., Oesper, L., Peifer, M., Peto, M., Rosebrock, D., Rubanova, Y., Salcedo, A., Sengupta, S., Shi, R., Shin, S. J., Spiro, O., Vembu, S., Wintersinger, J. A., Yang, T. P., Yu, K., Zhu, H., Spellman, P. T., Weinstein, J. N., Chen, Y., Fujita, M., Han, L., Hasegawa, T., Komura, M., Li, J., Mizuno, S., Shimizu, E., Wang, Y., Xu, Y., Yamaguchi, R., Yang, F., Yang, Y., Yoon, C. J., Yuan, Y., Liang, H., Alawi, M., Borozan, I., Brewer, D. S., Cooper, C. S., Desai, N., Grundhoff, A., Iskar, M., Su, X., Zapatka, M., Lichter, P., Alsop, K., Bruxner, T. J. C., Christ, A. N., Cordner, S. M., Cowin, P. A., Drapkin, R., Fereday, S., George, J., Hamilton, A., Holmes, O., Hung, J. A., Kassahn, K. S., Kazakoff, S. H., Kennedy, C. J., Leonard, C. R., Mileshkin, L., Miller, D. K., Arnau, G. M., Mitchell, C., Newell, F., Nones, K., Patch, A. M., Quinn, M. C., Taylor, D. F., Thorne, H., Traficante, N., Vedururu, R., Waddell, N. M., Waring, P. M., Wood, S., Xu, Q., deFazio, A., Anderson, M. J., Antonello, D., Barbour, A. P., Bassi, C., Bersani, S., Cataldo, I., Chantrill, L. A., Chiew, Y. E., Chou, A., Cingarlini, S., Cloonan, N., Corbo, V., Davi, M. V., Duthie, F. R., Gill, A. J., Graham, J. S., Harliwong, I., Jamieson, N. B., Johns, A. L., Kench, J. G., Landoni, L., Lawlor, R. T., Mafficini, A., Merrett, N. D., Miotto, M., Musgrove, E. A., Nagrial, A. M., Oien, K. A., Pajic, M., Pinese, M., Robertson, A. J., Rooman, I., Rusev, B. C., Samra, J. S., Scardoni, M., Scarlett, C. J., Scarpa, A., Sereni, E., Sikora, K. O., Simbolo, M., Taschuk, M. L., Toon, C. W., Vicentini, C., Wu, J., Zeps, N., Behren, A., Burke, H., Cebon, J., Dagg, R. A., De Paoli-Iseppi, R., Dutton-Regester, K., Field, M. A., Fitzgerald, A., Hersey, P., Jakrot, V., Johansson, P. A., Kakavand, H., Kefford, R. F., Lau, L. M. S., Long, G. V., Pickett, H. A., Pritchard, A. L., Pupo, G. M., Saw, R. P. M., Schramm, S. J., Shang, C. A., Shang, P., Spillane, A. J., Stretch, J. R., Tembe, V., Thompson, J. F., Vilain, R. E., Wilmott, J. S., Yang, J. Y., Hayward, N. K., Mann, G. J., Scolyer, R. A., Bartlett, J., Bavi, P., Chadwick, D. E., Chan-Seng-Yue, M., Cleary, S., Connor, A. A., Czajka, K., Denroche, R. E., Dhani, N. C., Eagles, J., Gallinger, S., Grant, R. C., Hedley, D., Hollingsworth, M. A., Jang, G. H., Johns, J., Kalimuthu, S., Liang, S. B., Lungu, I., Luo, X., Mbabaali, F., McPherson, T. A., Miller, J. K., Moore, M. J., Notta, F., Pasternack, D., Petersen, G. M., Roehrl, M. H. A., Sam, M., Selander, I., Serra, S., Shahabi, S., Thayer, S. P., Timms, L. E., Wilson, G. W., Wilson, J. M., Wouters, B. G., McPherson, J. D., Beck, T. A., Bhandari, V., Collins, C. C., Fleshner, N. E., Fox, N. S., Fraser, M., Heisler, L. E., Lalonde, E., Livingstone, J., Meng, A., Sabelnykova, V. Y., Shiah, Y. J., Van der Kwast, T., Bristow, R. G., Ding, S., Fan, D., Li, L., Nie, Y., Xiao, X., Xing, R., Yang, S., Yu, Y., Zhou, Y., Banks, R. E., Bourque, G., Brennan, P., Letourneau, L., Riazalhosseini, Y., Scelo, G., Vasudev, N., Viksna, J., Lathrop, M., Tost, J., Ahn, S. M., Aparicio, S., Arnould, L., Aure, M. R., Bhosle, S. G., Birney, E., Borg, A., Boyault, S., Brinkman, A. B., Brock, J. E., Broeks, A., Børresen-Dale, A. L., Caldas, C., Chin, S. F., Davies, H., Desmedt, C., Dirix, L., Dronov, S., Ehinger, A., Eyfjord, J. E., Fatima, A., Foekens, J. A., Futreal, P. A., Garred, Ø, Giri, D. D., Glodzik, D., Grabau, D., Hilmarsdottir, H., Hooijer, G. K., Jacquemier, J., Jang, S. J., Jonasson, J. G., Jonkers, J., Kim, H. Y., King, T. A., Knappskog, S., Kong, G., Krishnamurthy, S., Lakhani, S. R., Langerød, A., Larsimont, D., Lee, H. J., Lee, J. Y., Lee, M. T. M., Lingjærde, O. C., MacGrogan, G., Martens, J. W. M., O’Meara, S., Pauporté, I., Pinder, S., Pivot, X., Provenzano, E., Purdie, C. A., Ramakrishna, M., Ramakrishnan, K., Reis-Filho, J., Richardson, A. L., Ringnér, M., Rodriguez, J. B., Rodríguez-González, F. G., Romieu, G., Salgado, R., Sauer, T., Shepherd, R., Sieuwerts, A. M., Simpson, P. T., Smid, M., Sotiriou, C., Span, P. N., Stefánsson, Ó A., Stenhouse, A., Stunnenberg, H. G., Sweep, F., Tan, B. K. T., Thomas, G., Thompson, A. M., Tommasi, S., Treilleux, I., Tutt, A., Ueno, N. T., Van Laere, S., Van den Eynden, G. G., Vermeulen, P., Viari, A., Vincent-Salomon, A., Wong, B. H., Yates, L., Zou, X., van Deurzen, C. H. M., van de Vijver, M. J., van’t Veer, L., Ammerpohl, O., Aukema, S., Bergmann, A. K., Bernhart, S. H., Borkhardt, A., Borst, C., Burkhardt, B., Claviez, A., Goebler, M. E., Haake, A., Haas, S., Hansmann, M., Hoell, J. I., Hummel, M., Karsch, D., Klapper, W., Kneba, M., Kreuz, M., Kube, D., Küppers, R., Lenze, D., Loeffler, M., López, C., Mantovani-Löffler, L., Möller, P., Ott, G., Radlwimmer, B., Richter, J., Rohde, M., Rosenstiel, P. C., Rosenwald, A., Schilhabel, M. B., Schreiber, S., Stadler, P. F., Staib, P., Stilgenbauer, S., Sungalee, S., Szczepanowski, M., Toprak, U. H., Trümper, L. H. P., Wagener, R., Zenz, T., Hovestadt, V., von Kalle, C., Kool, M., Korshunov, A., Landgraf, P., Lehrach, H., Northcott, P. A., Pfister, S. M., Reifenberger, G., Warnatz, H. J., Wolf, S., Yaspo, M. L., Assenov, Y., Gerhauser, C., Minner, S., Schlomm, T., Simon, R., Sauter, G., Sültmann, H., Biswas, N. K., Maitra, A., Majumder, P. P., Sarin, R., Barbi, S., Bonizzato, G., Cantù, C., Dei Tos, A. P., Fassan, M., Grimaldi, S., Luchini, C., Malleo, G., Marchegiani, G., Milella, M., Paiella, S., Pea, A., Pederzoli, P., Ruzzenente, A., Salvia, R., Sperandio, N., Arai, Y., Hama, N., Hiraoka, N., Hosoda, F., Nakamura, H., Ojima, H., Okusaka, T., Totoki, Y., Urushidate, T., Fukayama, M., Ishikawa, S., Katai, H., Katoh, H., Komura, D., Rokutan, H., Saito-Adachi, M., Suzuki, A., Taniguchi, H., Tatsuno, K., Ushiku, T., Yachida, S., Yamamoto, S., Aikata, H., Arihiro, K., Ariizumi, S. I., Chayama, K., Furuta, M., Gotoh, K., Hayami, S., Hirano, S., Kawakami, Y., Maejima, K., Nakamura, T., Nakano, K., Ohdan, H., Sasaki-Oku, A., Tanaka, H., Ueno, M., Yamamoto, M., Yamaue, H., Choo, S. P., Cutcutache, I., Khuntikeo, N., Ong, C. K., Pairojkul, C., Popescu, I., Ahn, K. S., Aymerich, M., Lopez-Guillermo, A., López-Otín, C., Puente, X. S., Campo, E., Amary, F., Baumhoer, D., Behjati, S., Bjerkehagen, B., Futreal, P. A., Myklebost, O., Pillay, N., Tarpey, P., Tirabosco, R., Zaikova, O., Flanagan, A. M., Boultwood, J., Bowen, D. T., Cazzola, M., Green, A. R., Hellstrom-Lindberg, E., Malcovati, L., Nangalia, J., Papaemmanuil, E., Vyas, P., Ang, Y., Barr, H., Beardsmore, D., Eldridge, M., Gossage, J., Grehan, N., Hanna, G. B., Hayes, S. J., Hupp, T. R., Khoo, D., Lagergren, J., Lovat, L. B., MacRae, S., O’Donovan, M., O’Neill, J. R., Parsons, S. L., Preston, S. R., Puig, S., Roques, T., Sanders, G., Sothi, S., Tavaré, S., Tucker, O., Turkington, R., Underwood, T. J., Welch, I., Fitzgerald, R. C., Berney, D. M., De Bono, J. S., Cahill, D., Camacho, N., Dennis, N. M., Dudderidge, T., Edwards, S. E., Fisher, C., Foster, C. S., Ghori, M., Gill, P., Gnanapragasam, V. J., Gundem, G., Hamdy, F. C., Hawkins, S., Hazell, S., Howat, W., Isaacs, W. B., Karaszi, K., Kay, J. D., Khoo, V., Kote-Jarai, Z., Kremeyer, B., Kumar, P., Lambert, A., Leongamornlert, D. A., Livni, N., Lu, Y. J., Luxton, H. J., Marsden, L., Massie, C. E., Matthews, L., Mayer, E., McDermott, U., Merson, S., Neal, D. E., Ng, A., Nicol, D., Ogden, C., Rowe, E. W., Shah, N. C., Thomas, S., Thompson, A., Verrill, C., Visakorpi, T., Warren, A. Y., Whitaker, H. C., Zhang, H., van As, N., Eeles, R. A., Abeshouse, A., Agrawal, N., Akbani, R., Al-Ahmadie, H., Albert, M., Aldape, K., Ally, A., Appelbaum, E. L., Armenia, J., Asa, S., Auman, J. T., Balasundaram, M., Balu, S., Barnholtz-Sloan, J., Bathe, O. F., Baylin, S. B., Benz, C., Berchuck, A., Berrios, M., Bigner, D., Birrer, M., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bosenberg, M., Bowlby, R., Boyd, J., Broaddus, R. R., Brock, M., Brooks, D., Bullman, S., Caesar-Johnson, S. J., Carey, T. E., Carlsen, R., Cerfolio, R., Chandan, V. S., Chen, H. W., Cherniack, A. D., Chien, J., Cho, J., Chuah, E., Cibulskis, C., Cope, L., Cordes, M. G., Curley, E., Czerniak, B., Danilova, L., Davis, I. J., Defreitas, T., Demchok, J. A., Dhalla, N., Dhir, R., Doddapaneni, H. V., El-Naggar, A., Felau, I., Ferguson, M. L., Finocchiaro, G., Fong, K. M., Frazer, S., Friedman, W., Fronick, C. C., Fulton, L. A., Gabriel, S. B., Gao, J., Gehlenborg, N., Gershenwald, J. E., Ghossein, R., Giama, N. H., Gibbs, R. A., Gomez, C., Govindan, R., Hayes, D. N., Hegde, A. M., Heiman, D. I., Heins, Z., Hepperla, A. J., Holbrook, A., Holt, R. A., Hoyle, A. P., Hruban, R. H., Hu, J., Huang, M., Huntsman, D., Huse, J., Iacobuzio-Donahue, C. A., Ittmann, M., Jayaseelan, J. C., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Juhl, H., Kang, K. J., Karlan, B., Kasaian, K., Kebebew, E., Kim, H. K., Korchina, V., Kundra, R., Lai, P. H., Lander, E., Le, X., Lee, D., Levine, D. A., Lewis, L., Ley, T., Li, H. I., Lin, P., Linehan, W. M., Liu, F. F., Lu, Y., Lype, L., Ma, Y., Maglinte, D. T., Mardis, E. R., Marks, J., Marra, M. A., Matthew, T. J., Mayo, M., McCune, K., Meier, S. R., Meng, S., Mieczkowski, P. A., Mikkelsen, T., Miller, C. A., Mills, G. B., Moore, R. A., Morrison, C., Mose, L. E., Moser, C. D., Mungall, A. J., Mungall, K., Mutch, D., Muzny, D. M., Myers, J., Newton, Y., Noble, M. S., O’Donnell, P., O’Neill, B. P., Ochoa, A., Park, J. W., Parker, J. S., Pass, H., Pastore, A., Pennell, N. A., Perou, C. M., Petrelli, N., Potapova, O., Rader, J. S., Ramalingam, S., Rathmell, W. K., Reuter, V., Reynolds, S. M., Ringel, M., Roach, J., Roberts, L. R., Robertson, A. G., Sadeghi, S., Saller, C., Sanchez-Vega, F., Schadendorf, D., Schein, J. E., Schmidt, H. K., Schultz, N., Seethala, R., Senbabaoglu, Y., Shelton, T., Shi, Y., Shih, J., Shmulevich, I., Shriver, C., Signoretti, S., Simons, J. V., Singer, S., Sipahimalani, P., Skelly, T. J., Smith-McCune, K., Socci, N. D., Soloway, M. G., Sood, A. K., Tam, A., Tan, D., Tarnuzzer, R., Thiessen, N., Thompson, R. H., Thorne, L. B., Tsao, M., Umbricht, C., Van Den Berg, D. J., Van Meir, E. G., Veluvolu, U., Voet, D., Wang, L., Weinberger, P., Weisenberger, D. J., Wigle, D., Wilkerson, M. D., Wilson, R. K., Winterhoff, B., Wiznerowicz, M., Wong, T., Wong, W., Xi, L., Yau, C., Zhang, H., Zhang, H., Zhang, J., The, Icgc Tcga Pan-Cancer Analysis of Whole Genomes Consortium (2020) Pan-cancer analysis of whole genomes. Nature, 578 (7793). pp. 82-93. ISSN 0028-0836 (Public Dataset)

Cardoso, F, Paluch-Shimon, S, Senkus, E, Curigliano, G, Aapro, MS, André, F, Barrios, CH, Bergh, J, Bhattacharyya, GS, Biganzoli, L, Boyle, F, Cardoso, M-J, Carey, LA, Cortés, J, El Saghir, NS, Elzayat, M, Eniu, A, Fallowfield, L, Francis, PA, Gelmon, K, Gligorov, J, Haidinger, R, Harbeck, N, Hu, X, Kaufman, B, Kaur, R, Kiely, BE, Kim, S-B, Lin, NU, Mertz, SA, Neciosup, S, Offersen, BV, Ohno, S, Pagani, O, Prat, A, Penault-Llorca, F, Rugo, HS, Sledge, GW, Thomssen, C, Vorobiof, DA, Wiseman, T, Xu, B, Norton, L, Costa, A, Winer, EP (December 2020) 5th ESO-ESMO international consensus guidelines for advanced breast cancer (ABC 5). Annals of Oncology, 31 (12). pp. 1623-1649. ISSN 0923-7534

Casanova, Jean-Laurent, Holtzman, David M, Kaech, Susan M, Lanier, Lewis L, Nathan, Carl F, Rudensky, Alexander Y, Tuveson, David, Wolchok, Jedd D (November 2020) Immigration in science. Journal of Experimental Medicine, 217 (11). ISSN 0022-1007

Chan-Seng-Yue, M., Kim, J. C., Wilson, G. W., Ng, K., Figueroa, E. F., O'Kane, G. M., Connor, A. A., Denroche, R. E., Grant, R. C., McLeod, J., Wilson, J. M., Jang, G. H., Zhang, A., Liang, S. B., Borgida, A., Chadwick, D., Kalimuthu, S., Lungu, I., Bartlett, J. M. S., Krzyzanowski, P. M., Sandhu, V., Tiriac, H., Froeling, F. E. M., Karasinska, J. M., Topham, J. T., Renouf, D. J., Schaeffer, D. F., Jones, S. J. M., Marra, M. A., Laskin, J., Chetty, R., Stein, L. D., Zogopoulos, G., Haibe-Kains, B., Campbell, P. J., Tuveson, D. A., Knox, J. J., Fischer, S. E., Gallinger, S., Notta, F. (January 2020) Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution. Nat Genet. ISSN 1061-4036 (Public Dataset)

Chang, K. C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., Alsudani, H., Kostroff, K., Bhuiya, T., Brogi, E., Bennett, C. F., Rigo, F., Spector, D. L. (February 2020) MaTAR25 LncRNA Regulates the Tensin1 Gene to Impact Breast Cancer Progression. BioRxiv. (Unpublished)

Chang, K. C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., Alsudani, H., Kostroff, K., Bhuiya, T., Brogi, E., Pappin, D. J., Bennett, C. F., Rigo, F., Spector, D. L. (December 2020) MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. Nat Commun, 11 (1). p. 6438. ISSN 2041-1723

Cheadle, Lucas, Rivera, Samuel A, Phelps, Jasper S, Ennis, Katelin A, Stevens, Beth, Burkly, Linda C, Lee, Wei-Chung Allen, Greenberg, Michael E (November 2020) Sensory Experience Engages Microglia to Shape Neural Connectivity through a Non-Phagocytic Mechanism. Neuron, 108 (3). 451-468.e9. ISSN 0896-6273

Chen, C. C., Li, B., Millman, S. E., Chen, C., Li, X., Morris, J. P. Iv, Mayle, A., Ho, Y. J., Loizou, E., Liu, H., Qin, W., Shah, H., Violante, S., Cross, J. R., Lowe, S. W., Zhang, L. (January 2020) Vitamin B6 Addiction in Acute Myeloid Leukemia. Cancer Cell, 37 (1). pp. 71-84. ISSN 15356108 (ISSN) (Public Dataset)

Chen, Wei-Chia, Zhou, Juannan, Sheltzer, Jason, Kinney, Justin, McCandlish, David (December 2020) Non-parametric Bayesian density estimation for biological sequence space with applications to pre-mRNA splicing and the karyotypic diversity of human cancer. BioRxiv. (Unpublished)

Cheng, D. K., Oni, T. E., Park, Y., Thalappillil, J. S, Ting, H.-C., Alagesan, B., Prasad, N. V., Rivera, K. D., Pappin, D. J., Van Aelst, L., Tuveson, D. A. (September 2020) Oncogenic KRAS engages an RSK1/NF1 complex in pancreatic cancer. BioRxiv. (Unpublished)

Cheng, D. K., Tuveson, D. A. (May 2020) Identifying protein interactors of oncogenic Kras in pancreatic cancer cells via proximity labelling. Molecular Cancer Research, 18 (5). p. 64. ISSN 1541-7786

Cheung, E. C., DeNicola, G. M., Nixon, C., Blyth, K., Labuschagne, C. F., Tuveson, D. A., Vousden, K. H. (January 2020) Dynamic ROS Control by TIGAR Regulates the Initiation and Progression of Pancreatic Cancer. Cancer Cell. ISSN 1535-6108

Chin, C. S., Wagner, J., Zeng, Q., Garrison, E., Garg, S., Fungtammasan, A., Rautiainen, M., Aganezov, S., Kirsche, M., Zarate, S., Schatz, M. C., Xiao, C., Rowell, W. J., Markello, C., Farek, J., Sedlazeck, F. J., Bansal, V., Yoo, B., Miller, N., Zhou, X., Carroll, A., Barrio, A. M., Salit, M., Marschall, T., Dilthey, A. T., Zook, J. M. (September 2020) A diploid assembly-based benchmark for variants in the major histocompatibility complex. Nat Commun, 11 (1). p. 4794. ISSN 2041-1723

Chio, I. I. C., Oertlin, C., Robert, F., Chan, K., Liberm, D. K., Santana, A., Park, Y., Larsson, O., Pelletier, J., Tuveson, D. A. (May 2020) Targeting redox dependencies in pancreatic cancer. Molecular Cancer Research, 18 (5). p. 22. ISSN 1541-7786

Choi, Jung Yoon, Jang, Hee Jae, Ornelas, Sharon, Fleming, Weston T, Fürth, Daniel, Au, Jennifer, Bandi, Akhil, Engel, Esteban A, Witten, Ilana B (December 2020) A Comparison of Dopaminergic and Cholinergic Populations Reveals Unique Contributions of VTA Dopamine Neurons to Short-Term Memory. Cell Reports, 33 (11). p. 108492. ISSN 2211-1247

Chorbadjiev, L., Kendall, J., Alexander, J., Zhygulin, V., Song, J., Wigler, M., Krasnitz, A. (May 2020) Integrated Computational Pipeline for Single-Cell Genomic Profiling. JCO Clinical Cancer Informatics, 4. pp. 464-471.

Chou, H. C., Bhalla, K., El Demerdash, O., Klingbeil, O., Hanington, Kaarina, Aganezov, S., Andrews, P., Alsudani, H., Chang, K., Vakoc, C. R., Schatz, M. C., McCombie, W. R., Stillman, B. (August 2020) The human Origin Recognition Complex is essential for pre-RC assembly, mitosis and maintenance of nuclear structure. BioRxiv. (Unpublished)

Chou, Tsung-Han, Tajima, Nami, Romero-Hernandez, Annabel, Furukawa, Hiro (July 2020) Structural Basis of Functional Transitions in Mammalian NMDA Receptors. Cell, 182 (2). 357-371.e13. ISSN 0092-8674

Ciccone, M. F., Trousdell, M. C., Dos Santos, C. O. (November 2020) Characterization of Organoid Cultures to Study the Effects of Pregnancy Hormones on the Epigenome and Transcriptional Output of Mammary Epithelial Cells. J Mammary Gland Biol Neoplasia, 25 (4). pp. 351-366. ISSN 1083-3021

Clark, J. W., Camidge, D. R., Kwak, E. L., Maki, R. G., Shapiro, G. I., Chen, I., Tan, W., Randolph, S., Christensen, J. G., Ozeck, M., Tang, Y., Wilner, K. D., Salgia, R. (January 2020) Dose-escalation trial of the ALK, MET & ROS1 inhibitor, crizotinib, in patients with advanced cancer. Future Oncol, 16 (1). pp. 4289-4301. ISSN 1479-6694

Connell, Claire M, Brais, Rebecca, Whitaker, Hayley, Upponi, Sara, Beh, Ian, Risdall, Jane, Corrie, Pippa, Janowitz, Tobias, Jodrell, Duncan I (January 2020) Early relapse on adjuvant gemcitabine associated with an exceptional response to 2nd line capecitabine chemotherapy in a patient with pancreatic adenosquamous carcinoma with strong intra-tumoural expression of cytidine deaminase: a case report. BMC Cancer, 20 (1). p. 38. ISSN 1471-2407

Corrie, P.G., Qian, W., Basu, B., Valle, J.W., Falk, S., Lwuji, C., Wasan, H., Palmer, D., Scott-Brown, M., Wadsley, J., Arif, S., Bridgewater, J., Propper, D., Gillmore, R., Gopinathan, A., Skells, R., Bundi, P., Brais, R., Dalchau, K., Bax, L., Chhabra, A., Machin, A., Dayim, A., McAdam, K., Cummins, S., Wall, L., Ellis, R., Anthoney, A., Evans, J., Ma, Y.T., Isherwood, C., Neesse, A., Tuveson, D., Jodrell, D. I. (April 2020) Scheduling Nab-Paclitaxel Combined With Gemcitabine as First-Line Treatment for Metastatic Pancreatic Adenocarcinoma. Br J Cancer. ISSN 0007-0920

Cowley, Benjamin R, Snyder, Adam C, Acar, Katerina, Williamson, Ryan C, Yu, Byron M, Smith, Matthew A (November 2020) Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron, 108 (3). 551-567.e8. ISSN 0896-6273

Crow, Megan, Suresh, Hamsini, Lee, John, Gillis, Jesse (November 2020) Coexpression reveals conserved mechanisms of transcriptional cell identity. BioRxiv. (Unpublished)

Cullen, H., Schorn, A. J. (July 2020) Endogenous Retroviruses Walk a Fine Line between Priming and Silencing. Viruses, 12 (8). p. 792. ISSN 1999-4915

Dancsok, A. R., Gao, D., Lee, A.F., Steigen, S.E., Blay, J.Y., Thomas, D.M., Maki, R.G., Nielsen, T. O., Demicco, E. G. (April 2020) Tumor-associated Macrophages and Macrophage-Related Immune Checkpoint Expression in Sarcomas. Oncoimmunology, 9 (1). p. 1747340. ISSN 2162402X,

Darby, C.A., Gaddipati, R., Schatz, M.C., Langmead, B. (April 2020) Vargas: Heuristic-Free Alignment for Assessing Linear and Graph Read Aligners. Bioinformatics. ISSN 1367-4803 (Public Dataset)

Dasgupta, A., Shukla, S.K., Vernucci, E., King, R.J., Abrego, J., Mulder, S.E., Mullen, N.J., Graves, G., Buettner, K., Thakur, R., Murthy, D., Attri, K.S., Wang, D., Chaika, N.V., Pacheco, C.G., Rai, I., Engle, D. D., Grandgenett, P. M., Punsoni, M., Reames, B.N., Teoh-Fitzgerald, M., Oberley-Deegan, R., Yu, F., Klute, K.A., Hollingsworth, M.A., Zimmerman, M.C., Mehla, K., Sadoshima, J., Tuveson, D. A., Singh, P.K. (July 2020) SIRT1-NOX4 Signaling Axis Regulates Cancer Cachexia. J Exp Med, 217 (7). e20190745. ISSN 0022-1007

Dassler-Plenker, J., Kuttner, V., Egeblad, M. (January 2020) Communication in tiny packages: Exosomes as means of tumor-stroma communication. Biochim Biophys Acta Rev Cancer, 1873 (2). p. 188340. ISSN 0304-419x

Delevich, K., Jaaro-Peled, H., Penzo, M., Sawa, A., Li, B. (February 2020) Parvalbumin interneuron dysfunction in a thalamo-prefrontal cortical circuit in Disc1 locus impairment mice. eNeuro. ISSN 2373-2822

Demir, E., Li, K., Bobrowski-Khoury, N., Sanders, J. I., Beynon, R. J., Hurst, J. L., Kepecs, A., Axel, R. (January 2020) The pheromone darcin drives a circuit for innate and reinforced behaviours. Nature, 578 (7793). pp. 137-141. ISSN 0028-0836

Demisse, Rahel, Damle, Neha, Kim, Edward, Gong, Jun, Fakih, Marwan, Eng, Cathy, Oesterich, Leslie, McKenny, Madison, Ji, Jingran, Liu, James, Louie, Ryan, Tam, Kit, Gholami, Sepideh, Halabi, Wissam, Monjazeb, Arta, Dayyani, Farshid, Cho, May (July 2020) Neoadjuvant Immunotherapy-Based Systemic Treatment in MMR-Deficient or MSI-High Rectal Cancer: Case Series. Journal of the National Comprehensive Cancer Network : JNCCN, 18 (7). pp. 798-804. ISSN 1540-1405

Diniz, A. L., da Silva, D. I. R., Lembke, C. G., Costa, M. D. L., Ten-Caten, F., Li, F., Vilela, R. D., Menossi, M., Ware, D., Endres, L., Souza, G. M. (November 2020) Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane. Int J Mol Sci, 21 (23). p. 9124. ISSN 1422-0067

Dobin, Daniel, Dobin, Alexander (April 2020) Racial/ethnic and socioeconomic disparities of Covid-19 attacks rates in Suffolk County communities. (Submitted)

Dore, K., Pao, Y., Soria Lopez, J., Aronson, S., Zhan, H., Ghosh, S., Merrill, S., Zador, A. M., Malinow, R., Kebschull, J. M. (January 2020) SYNPLA, a method to identify synapses displaying plasticity after learning. Proc Natl Acad Sci U S A, 117 (6). pp. 3214-3219. ISSN 0027-8424 (Public Dataset)

Dukler, N., Huang, Y-F., Siepel, A. (March 2020) Phylogenetic Modeling of Regulatory Element Turnover Based on Epigenomic Data. Mol Biol Evol, 37 (7). pp. 2137-2152. ISSN 0737-4038

Eban-Rothschild, Ada, Borniger, Jeremy C, Rothschild, Gideon, Giardino, William J, Morrow, Joshua G, de Lecea, Luis (March 2020) Arousal State-Dependent Alterations in VTA-GABAergic Neuronal Activity. eNeuro, 7 (2). ENEURO.0356-19.2020. ISSN 2373-2822

Fearon, Douglas, Wang, Zhikai (September 2020) Pancreatic cancer cells assemble a CXCL12-keratin 19 coating to resist immunotherapy. In: Proceedings of the AACR Virtual Special Conference on Pancreatic Cancer; 2020.

Feigman, M.J., Moss, M.A., Chen, C., Cyrill, S.L., Cicone, M.F., Trousdell, M.C., Yang, S.-T., Frey, W.D., Wilkinson, J.E., Dos Santos, C. O. (May 2020) Pregnancy Reprograms the Epigenome of Mammary Epithelial Cells and Blocks the Development of Premalignant Lesions. Nat Commun, 11 (1). p. 2649. ISSN 2041-1723

Feigman, Mary J, Moss, Matthew A, Chen, Chen, Cyrill, Samantha L, Ciccone, Michael, Trousdell, Marygrace, Yang, Shih Ting, Frey, Wesley D, Wilkinson, John E, dos Santos, Camila O (June 2020) Pregnancy reprograms the epigenome of mammary epithelial cells and blocks the development of premalignant mammary lesions in response to cMYC-overexpression. In: AACR Special Conference on the Evolving Landscape of Cancer Modeling.

Fein, Miriam R, He, Xue-Yan, Almeida, Ana S, Bružas, Emilis, Pommier, Arnaud, Yan, Ran, Eberhardt, Anaïs, Fearon, Douglas T, Van Aelst, Linda, Wilkinson, John Erby, Dos Santos, Camila O, Egeblad, Mikala (October 2020) Cancer cell CCR2 orchestrates suppression of the adaptive immune response. Journal of Experimental Medicine, 217 (10). ISSN 0022-1007

Fisher, M. L., Balinth, S., Mills, A. A. (September 2020) p63-related signaling at a glance. J Cell Sci, 133 (17). ISSN 0021-9533 (Print)0021-9533

Freedberg, D.E., Conigliaro, J., Wang, T.C., Tracey, K.J., Callahan, M.V., Abrams, J.A., On behalf of the Famotidine Research Group, Famotidine Research Group, Sobieszczyk, M.E., Markowitz, D.D., Gupta, A., O'Donnell, M.R., Li, J., Tuveson, D.A., Jin, Z., Turner, W.C., Landry, D.W. (May 2020) Famotidine Use Is Associated With Improved Clinical Outcomes in Hospitalized COVID-19 Patients: A Propensity Score Matched Retrospective Cohort Study. Gastroenterology. ISSN 0016-5085

Froeling, Fieke E.M., Plenker, Dennis, O’Kane, Grainne, Aguirre, Andrew J., Wolpin, Brian M., Laheru, Daniel A., Saif, M Wasif, Yu, Kenneth H., Fischer, Sandra, Gallinger, Steven, Knox, Jennifer J., Jaffee, Elizabeth M., Tuveson, David A. (September 2020) Organoid Personalized Therapeutics and the Pancreatic Adenocarcinoma Signature Stratification for treatment (PASS) – 01 trial. In: The London Pancreas Workshop 2020.

Fu, P., Ramchandran, R., Shaaya, M., Huang, L., Ebenezer, D.L., Jiang, Y., Komarova, Y., Vogel, S.M., Malik, A.B., Minshall, R.D., Du, G., Tonks, N. K., Natarajan, V. (April 2020) Phospholipase D2 Restores Endothelial Barrier Function by Promoting PTPN14-mediated VE-cadherin Dephosphorylation. Journal of Biological Chemistry, 295 (22). pp. 7669-7685. ISSN 0021-9258

Gagnière, Johan, Dupré, Aurélien, Gholami, Sepideh S, Pezet, Denis, Boerner, Thomas, Gönen, Mithat, Kingham, Thomas P, Allen, Peter J, Balachandran, Vinod P, De Matteo, Ronald P, Drebin, Jeffrey A, Yaeger, Rona, Kemeny, Nancy E, Jarnagin, William R, D'Angelica, Michael I (January 2020) Is Hepatectomy Justified for BRAF Mutant Colorectal Liver Metastases?: A Multi-institutional Analysis of 1497 Patients. Annals of Surgery, 271 (1). pp. 147-154. ISSN 0003-4932

Gale Hammell, M., Rowe, H. M. (December 2020) Editorial Overview: Endogenous Retroviruses in Development and Disease. Viruses, 12 (12). ISSN 1999-4915

Gallo, N. B., Paul, A., Van Aelst, L. (June 2020) Shedding Light on Chandelier Cell Development, Connectivity, and Contribution to Neural Disorders. Trends in Neurosciences, 43 (8). pp. 565-580. ISSN 0166-2236

Ganesh, Karuna, Basnet, Harihar, Kaygusuz, Yasemin, Laughney, Ashley M, He, Lan, Sharma, Roshan, O'Rourke, Kevin P, Reuter, Vincent P, Huang, Yun-Han, Turkekul, Mesruh, Er, Ekrem Emrah, Masilionis, Ignas, Manova-Todorova, Katia, Weiser, Martin R, Saltz, Leonard B, Garcia-Aguilar, Julio, Koche, Richard, Lowe, Scott W, Pe'er, Dana, Shia, Jinru, Massagué, Joan (November 2020) Author Correction: L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer. Nature Cancer, 1 (11). p. 1128. ISSN 2662-1347

Gao, ChongFeng, Wisniewski, Luke, Liu, Ying, Staal, Ben, Beddows, Ian, Plenker, Dennis, Aldakkak, Mohammed, Hall, Johnathan, Barnett, Daniel, Gouda, Mirna Kheir, Allen, Peter, Drake, Richard, Zureikat, Amer, Huang, Ying, Evans, Douglas, Singhi, Aatur, Brand, Randall, Tuveson, David, Tsai, Susan, Haab, Brian (September 2020) Detection of chemotherapy-resistant pancreatic cancer using a glycan Biomarker. In: AACR Virtual Special Conference on Pancreatic Cancer.

Garg, Ankur, Liu, Lihong, Ho, David, Joshua-Tor, Leemor (2020) Heterologous Expression and Purification of SARS-CoV2 Nucleocapsid Protein. Bio-protocol, 10 (8). ISSN 2331-8325

Gaudino, S. J., Beaupre, M., Lin, X., Joshi, P., Rathi, S., McLaughlin, P. A., Kempen, C., Mehta, N., Eskiocak, O., Yueh, B., Blumberg, R. S., van der Velden, A. W. M., Shroyer, K. R., Bialkowska, A. B., Beyaz, S., Kumar, P. (October 2020) IL-22 receptor signaling in Paneth cells is critical for their maturation, microbiota colonization, Th17-related immune responses, and anti-Salmonella immunity. Mucosal Immunol. ISSN 1933-0219

Gaudino, Stephen, Beaupre, Michael, Lin, Xun, Rathi, Sonika, McLaughlin, Patrick, Mehta, Neil, Eskiocak, Onur, Yueh, Brian, Van der Velden, Adrianus, Beyaz, Semir, Kumar, Pawan (May 2020) Interleukin-22 receptor signaling in Paneth cells is critical for their maturation and antimicrobial function. In: Annual Meeting of the American-Association-of-Immunologists - Immunology 2020, May 8-12, 2020, Honolulu, HI. (Unpublished)

Gegenhuber, B., Tollkuhn, J. (January 2020) Signatures of Sex: Sex Differences in Gene Expression in the Vertebrate Brain. Wiley Interdiscip Rev Dev Biol, 9 (1). e348.

Genkin, Mikhail, Engel, Tatiana A (October 2020) Moving beyond generalization to accurate interpretation of flexible models. Nature Machine Intelligence, 2 (11). pp. 674-683. ISSN 2522-5839

Gholami, Sepideh, Grothey, Axel (March 2020) EGFR antibodies in resectable metastatic colorectal liver metastasis: more harm than benefit? The Lancet Oncology, 21 (3). pp. 324-326. ISSN 1470-2045

Gholami, Sepideh, Judge, Sean J, Lee, Ser-Yee, Mashayekhi, Kiarash, Goh, Brian KP, Chan, Chung-Yip, Nuño, Miriam A, Gönen, Mithat, Balachandran, Vinod P, Allen, Peter J, Drebin, Jeffrey A, Jarnagin, William R, D' Angelica, Michael I, Kingham, Thomas Peter (December 2020) Is minimally invasive surgery of lesions in the right superior segments of the liver justified? A multi-institutional study of 245 patients. Journal of Surgical Oncology, 122 (7). pp. 1428-1434. ISSN 0022-4790

Gholami, Sepideh, Kemeny, Nancy E, Boucher, Taryn M, Gönen, Mithat, Cercek, Andrea, Kingham, T Peter, Balachandran, Vinod, Allen, Peter, DeMatteo, Ronald, Drebin, Jeffrey, Jarnagin, William, D'Angelica, Michael (August 2020) Adjuvant Hepatic Artery Infusion Chemotherapy is Associated With Improved Survival Regardless of KRAS Mutation Status in Patients With Resected Colorectal Liver Metastases: A Retrospective Analysis of 674 Patients. Annals of Surgery, 272 (2). pp. 352-356. ISSN 0003-4932

Giel, M. C., Smedley, C. J., Mackie, E. R. R., Guo, T., Dong, J., Soares da Costa, T. P., Moses, J. E. (January 2020) Metal-Free Synthesis of Functional 1-Substituted-1,2,3-Triazoles from Ethenesulfonyl Fluoride and Organic Azides. Angew Chem Int Ed Engl, 59 (3). pp. 1181-1186. ISSN 1433-7851

Giovanniello, J., Yu, K., Furlan, A., Nachtrab, G. T., Sharma, R., Chen, X., Li, B. (November 2020) A Central Amygdala-Globus Pallidus Circuit Conveys Unconditioned Stimulus-Related Information and Controls Fear Learning. J Neurosci, 40 (47). pp. 9043-9054. ISSN 0270-6474 (Print)0270-6474

Giovanniello, Jacqueline, Ahrens, Sandra, Yu, Kai, Li, Bo (November 2020) Sex-specific stress-related behavioral phenotypes and central amygdala dysfunction in a mouse model of 16p11.2 microdeletion. bioRxiv. (Unpublished)

Giovanniello, Jacqueline, Yu, Kai, Furlan, Alessandro, Nachtrab, Gregory Thomas, Sharma, Radhashree, Chen, Xiaoke, Li, Bo (April 2020) A central amygdala-globus pallidus circuit conveys unconditioned stimulus information and controls fear learning. bioRxiv. (Unpublished)

Girish, Vishruth, Sheltzer, Jason M (July 2020) A CRISPR Competition Assay to Identify Cancer Genetic Dependencies. Bio-protocol, 10 (14). e3682. ISSN 2331-8325

Gryder, B. E., Wachtel, M., Chang, K., El Demerdash, O., Aboreden, N.G., Mohammed, W., Ewert, W., Pomella, S., Rota, R., Wei, J.S., Song, Y., Stanton, B. Z., Schafer, B., Vakoc, C.R., Khan, J. (May 2020) Miswired Enhancer Logic Drives a Cancer of the Muscle Lineage. iScience, 23 (5). p. 101103. ISSN 2589-0042

Gryder, Berkley E, Wachtel, Marco, Ewert, Winston, Chang, Kenneth, El Demerdash, Osama, Song, Young, Schafer, Beat W, Vakoc, Christopher R, Khan, Javed (July 2020) PAX3 translocations co-opt super enhancers and intrinsically disordered fusion partners in rhabdomyosarcoma. In: AACR Special Conference on the Advances in Pediatric Cancer Research.

Gundle, K. R., Deutsch, G. B., Goodman, H. J., Pollack, S. M., Thompson, M. J., Davis, J. L., Lee, M. Y., Ramirez, D. C., Kerwin, W., Bertout, J. A., Grenley, M. O., Sottero, K. H. W., Beirne, E., Frazier, J., Dey, J., Ellison, M., Klinghoffer, R. A., Maki, R. G. (August 2020) Multiplexed Evaluation of Microdosed Antineoplastic Agents In Situ in the Tumor Microenvironment of Patients with Soft Tissue Sarcoma. Clin Cancer Res, 26 (15). pp. 3958-3968. ISSN 1078-0432 (Print)1078-0432

Gutbrod, M. J., Martienssen, R. A. (May 2020) Conserved chromosomal functions of RNA interference. Nat Rev Genet, 21 (5). pp. 311-331. ISSN 1471-0056

He, X. Y., Ng, D., Egeblad, M. (August 2020) Gut Feelings Block the Flow: Microbiota Links Stress to Vascular Disease. Immunity, 53 (2). pp. 238-240. ISSN 1074-7613

Hejase, H. A., Dukler, N., Siepel, A. (January 2020) From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection. Trends Genet. ISSN 0168-9525 (Print)0168-9525

Hejase, H. A., Salman-Minkov, A., Campagna, L., Hubisz, M. J., Lovette, I. J., Gronau, I., Siepel, A. (December 2020) Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps. Proc Natl Acad Sci U S A, 117 (48). pp. 30554-30565. ISSN 0027-8424 (Print)0027-8424

Hejase, Hussein, Salman-Minkov, Ayelet, Campagna, Leonardo, Hubisz, Melissa, Lovette, Irby, Gronau, Ilan, Siepel, Adam (March 2020) Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps. BioRxiv. (Unpublished)

Hon, T., Mars, K., Young, G., Tsai, Y. C., Karalius, J. W., Landolin, J. M., Maurer, N., Kudrna, D., Hardigan, M. A., Steiner, C. C., Knapp, S. J., Ware, D., Shapiro, B., Peluso, P., Rank, D. R. (November 2020) Highly accurate long-read HiFi sequencing data for five complex genomes. Sci Data, 7 (1). p. 399. ISSN 2052-4463

Howe, K. L., Contreras-Moreira, B., De Silva, N., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, A., Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, K. E., Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Wei, S., Ware, D., Williams, G., Yates, A. D., Flicek, P. (January 2020) Ensembl Genomes 2020-enabling non-vertebrate genomic research. Nucleic Acids Res, 48 (1). pp. 689-695. ISSN 0305-1048

Hu, Y, Tareen, A, Sheu, Y-J, Ireland, WT, Speck, C, Li, H, Joshua-Tor, L, Kinney, JB, Stillman, B (July 2020) Evolution of DNA Replication Origin Specification and Gene Silencing Mechanisms. BioRxiv. (Unpublished)

Hu, Y, Tareen, A., Sheu, Y. J., Ireland, W. T., Speck, C., Li, H., Joshua-Tor, L., Kinney, J. B., Stillman, B. (October 2020) Evolution of DNA replication origin specification and gene silencing mechanisms. Nature Communications, 11 (1). p. 5175. ISSN 2041-1723

Huang, J., Lu, G., Liu, L., Raihan, M. S., Xu, J., Jian, L., Zhao, L., Tran, T. M., Zhang, Q., Liu, J., Li, W., Wei, C., Braun, D. M., Li, Q., Fernie, A. R., Jackson, D., Yan, J. (August 2020) The Kernel Size-Related Quantitative Trait Locus qKW9 Encodes a Pentatricopeptide Repeat Protein That Aaffects Photosynthesis and Grain Filling. Plant Physiol, 183 (4). pp. 1696-1709. ISSN 0032-0889 (Print)0032-0889

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Hubert, Benjamin, Froeling, Fieke, Arora, Kanika, Chu, Tim, Robine, Nicolas, Zody, Michael, Oschwald, Dayna, Varmus, Harold, Sawyers, Charles, Tuveson, David (June 2020) Polyethnic-1000: Advancing cancer genomics by studying ethnically diverse, underserved patient populations in New York. In: Twelfth AACR Conference on the Science of Cancer Health Disparities in Racial/Ethnic Minorities and the Medically Underserved.

Hubisz, M., Siepel, A. (January 2020) Inference of Ancestral Recombination Graphs Using ARGweaver. Methods Mol Biol, 2090. pp. 231-266. ISSN 1064-3745

Hubisz, M. J., Williams, A. L., Siepel, A. (August 2020) Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph. PLoS Genet, 16 (8). e1008895. ISSN 1553-7390 (Print)1553-7390

Ibrahim, Ayman M, Moss, Matthew A, Gray, Zane, Rojo, Michelle D, Burke, Caitlin M, Schwertfeger, Kathryn L, Dos Santos, Camila O, Machado, Heather L (2020) Diverse Macrophage Populations Contribute to the Inflammatory Microenvironment in Premalignant Lesions During Localized Invasion. Frontiers in Oncology, 10. p. 569985. ISSN 2234-943X

Ipsaro, Jonathan J, O’Brien, Paul A, Bhattacharya, Shibani, Palmer, Arthur G, Joshua-Tor, Leemor (August 2020) Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. BioRxiv. (Unpublished)

Ireland, William T, Beeler, Suzannah M, Flores-Bautista, Emanuel, McCarty, Nicholas S, Röschinger, Tom, Belliveau, Nathan M, Sweredoski, Michael J, Moradian, Annie, Kinney, Justin B, Phillips, Rob (September 2020) Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time. eLife, 9. pp. 1-76. ISSN 2050-084X

Ireland, William Thornton, Beeler, Suzannah, Flores-Bautista, Emanuel, Belliveau, Nathan, Sweredoski, Michael, Moradian, Annie, Kinney, Justin Block, Phillips, Robert (January 2020) Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time. BioRxiv. (Unpublished)

Iyer, Shruti V, Goodwin, Sara, Kramer, Melissa, McCombie, W Richard (August 2020) Understanding genetic variation in cancer using targeted nanopore long read sequencing. In: AACR Annual Meeting.

Janowitz, T., Gablenz, E., Pattinson, D., Wang, T.C., Conigliaro, J., Tracey, K., Tuveson, D. (June 2020) Famotidine Use and Quantitative Symptom Tracking for COVID-19 in Non-Hospitalised Patients: A Case Series. Gut, 69 (9). pp. 1592-1597. ISSN 1468-3288

Janowitz, T., Tuveson, D. A. (May 2020) The Era of COVID-19 and the Rise of Science Collectivism in Cancer Research. Cancer Discov, 10 (7). pp. 913-915. ISSN 2159-8274

Janowitz, Tobias, Gablenz, Eva C, Pattinson, David J, Wang, Timothy C, Conigliaro, Joseph, Tracey, Kevin J, Tuveson, David A (September 2020) Famotidine use and quantitative symptom tracking for COVID-19 in nonhospitalized patients: A case series. In: AACR Annual Meeting.

Jaremko, M. J., On, K. F., Thomas, D. R., Stillman, B., Joshua-Tor, L. (August 2020) The dynamic nature of the human origin recognition complex revealed through five cryoEM structures. Elife, 9. e58622. ISSN 2050-084x

Jia, H., Li, M., Li, W., Liu, L., Jian, Y., Yang, Z., Shen, X., Ning, Q., Du, Y., Zhao, R., Jackson, D., Yang, X., Zhang, Z. (February 2020) A Serine/Threonine Protein Kinase Encoding Gene KERNEL NUMBER PER ROW6 Regulates Maize Grain Yield. Nature Communications, 11 (988). pp. 1-11. ISSN 2041-1723 (Public Dataset)

Jobanputra, Vaidehi, Andrews, Peter, Felice, Vanessa, Abhyankar, Avinash, Kozon, Lukasz, Robinson, Dino, London, Ferrah, Hakker, Inessa, Wrzeszczynski, Kazimierz, Ronemus, Michael (December 2020) Detection of Copy Number Variants by Short Multiply Aggregated Sequence Homologies. The Journal of Molecular Diagnostics, 22 (12). pp. 1476-1481. ISSN 1525-1578

Joly-Lopez, Z., Platts, A. E., Gulko, B., Choi, J. Y., Groen, S. C., Zhong, X., Siepel, A., Purugganan, M. D. (February 2020) An inferred fitness consequence map of the rice genome. Nat Plants, 6 (2). pp. 119-130. ISSN 2055-0278 (Public Dataset)

Josselsohn, R. H., Tuveson, D. A. (September 2020) Pancreatic cancer SLUGged. J Exp Med, 217 (9). ISSN 0022-1007

Judge, SJ, Ji, J, Liu, J, Kaur, M, Kim, E, Gong, J, Tam, KW, Kirane, AR, Gholami, S, Canter, RJ, Bold, RJ, Gangi, A, Fakih, M, Cho, M (April 2020) The Role of Palliative Surgery for Malignant Bowel Obstruction and Perforation in Advanced Microsatellite Instability-High Colorectal Carcinoma in the Era of Immunotherapy: Case Report. Frontiers in Oncology, 10. ISSN 2234-943X

Kagan, J., Moritz, R. L., Mazurchuk, R., Lee, J. H., Kharchenko, P. V., Rozenblatt-Rosen, O., Ruppin, E., Edfors, F., Ginty, F., Goltsev, Y., Wells, J. A., LaCava, J., Riesterer, J. L., Germain, R. N., Shi, T., Chee, M. S., Budnik, B. A., Yates, J. R., Chait, B. T., Moffitt, J. R., Smith, R. D., Srivastava, S. (May 2020) National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions. J Proteome Res, 19 (5). pp. 1900-1912. ISSN 1535-3893

Kaminow, Benjamin, Ballouz, Sara, Gillis, Jesse, Dobin, Alexander (December 2020) Virtue as the mean: Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses. BioRxiv. (Unpublished)

Kim, S. B., Karre, S., Wu, Q., Park, M., Meyers, E., Claeys, H., Wisser, R., Jackson, D., Balint-Kurti, P. (August 2020) Multiple insertions of COIN, a novel maize Foldback transposable element, in the Conring gene cause a spontaneous progressive cell death phenotype. Plant J. ISSN 0960-7412

Kleeman, Sam O, Leedham, Simon J (November 2020) Not All Wnt Activation Is Equal: Ligand-Dependent versus Ligand-Independent Wnt Activation in Colorectal Cancer. Cancers, 12 (11). pp. 1-16. ISSN 2072-6694

Koo, Peter K, Ploenzke, Matt (February 2020) Interpreting Deep Neural Networks Beyond Attribution Methods: Quantifying Global Importance of Genomic Features. bioRxiv. (Submitted)

Koo, PK, Ploenzke, M (February 2020) Deep learning for inferring transcription factor binding sites. Current Opinion in Systems Biology, 19. pp. 16-23. ISSN 2452-3100

Koo, Peter, Majdandzic, Antonio, Ploenzke, Matthew, Anand, Praveen, Paul, Steffan (September 2020) Global Importance Analysis: An Interpretability Method to Quantify Importance of Genomic Features in Deep Neural Networks. BioRxiv. (Unpublished)

Koo, Peter, Ploenzke, Matt (June 2020) Improving representations of genomic sequence motifs in convolutional networks with exponential activations. BioRxiv. (Unpublished)

Kressel, A. M., Tsaava, T., Levine, Y. A., Chang, E. H., Addorisio, M. E., Chang, Q., Burbach, B. J., Carnevale, D., Lembo, G., Zador, A. M., Andersson, U., Pavlov, V. A., Chavan, S. S., Tracey, K. J. (November 2020) Identification of a brainstem locus that inhibits tumor necrosis factor. Proc Natl Acad Sci U S A, 117 (47). pp. 29803-29810. ISSN 0027-8424 (Print)0027-8424

LaComb, J. F., Plenker, D., Tiriac, H., Bucobo, J. C., D'Souza, L.S., Khokhar, A.S., Patel, H., Channer, B., Joseph, D., Wu, M., Tuveson, D. A., Li, E., Buscaglia, J. M. (February 2020) Single-Pass vs 2-Pass Endoscopic Ultrasound-Guided Fine-Needle Biopsy Sample Collection for Creation of Pancreatic Adenocarcinoma Organoids. Clin Gastroenterol Hepatol. ISSN 1542-3565

Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T.H., Carandini, M., Tonegawa, S., Uchida, N., Kepecs, A. (April 2020) Reinforcement Biases Subsequent Perceptual Decisions When Confidence Is Low: A Widespread Behavioral Phenomenon. Elife, 9 (e49834). ISSN 2050-084X

Laszlovszky, T, Schlingloff, D, Hegedüs, P, Freund, T. F., Gulyás, A., Kepecs, A., Hangya, B. (June 2020) Distinct Synchronization, Cortical Coupling and Behavioral Function of Two Basal Forebrain Cholinergic Neuron Types. Nature Neuroscience, 23 (8). pp. 992-1003. ISSN 1097-6256

Laszlovszky, T., Schlingloff, D., Hegedüs, P., Freund, T. F., Gulyás, A., Kepecs, A., Hangya, B. (August 2020) Publisher Correction: Distinct synchronization, cortical coupling and behavioral function of two basal forebrain cholinergic neuron types. Nat Neurosci. ISSN 1097-6256

Lau, A. N., Li, Z., Danai, L. V., Westermark, A. M., Darnell, A. M., Ferreira, R., Gocheva, V., Sivanand, S., Lien, E. C., Sapp, K. M., Mayers, J. R., Biffi, G., Chin, C. R., Davidson, S. M., Tuveson, D. A., Jacks, T., Matheson, N. J., Yilmaz, O., Vander Heiden, M. G. (July 2020) Dissecting cell-type-specific metabolism in pancreatic ductal adenocarcinoma. Elife, 9. ISSN 2050-084x

Lau, B. Y. B., Krishnan, K., Huang, Z. J., Shea, S. D. (January 2020) Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires MECP2. J Neurosci, 40 (7). pp. 1514-1526. ISSN 0270-6474

Lee, B.C., Lin, M.K., Fu, Y., Hata, J., Miller, M.I., Mitra, P. P. (May 2020) Multimodal Cross-registration and Quantification of Metric Distortions in Marmoset Whole Brain Histology using Diffeomorphic Mappings. J Comp Neurol. ISSN 0021-9967

Lee, J., Shah, M., Ballouz, S., Crow, M., Gillis, J. (May 2020) CoCoCoNet: conserved and comparative co-expression across a diverse set of species. Nucleic Acids Research. ISSN 0305-1048

Lee, John, Shah, Manthan, Ballouz, Sara, Crow, Megan, Gillis, Jesse (April 2020) CoCoCoNet: Conserved and Comparative Co-expression Across a Diverse Set of Species. BioRxiv. (Unpublished)

Lee, S.C., Ernst, E., Berube, B., Borges, F., Parent, J. S., Ledon, P., Schorn, A., Martienssen, R. A. (April 2020) Arabidopsis Retrotransposon Virus-Like Particles and Their Regulation by Epigenetically Activated Small RNA. Genome Research, 30 (4). pp. 576-588. ISSN 1088-9051

Leibold, Josef, Ruscetti, Marcus, Cao, Zhen, Ho, Yu-Jui, Baslan, Timour, Zou, Min, Abida, Wassim, Feucht, Judith, Han, Teng, Barriga, Francisco M, Tsanov, Kaloyan M, Zamechek, Leah, Kulick, Amanda, Amor, Corina, Tian, Sha, Rybczyk, Katarzyna, Salgado, Nelson R, Sánchez-Rivera, Francisco J, Watson, Philip A, de Stanchina, Elisa, Wilkinson, John E, Dow, Lukas E, Abate-Shen, Cory, Sawyers, Charles L, Lowe, Scott W (July 2020) Somatic Tissue Engineering in Mouse Models Reveals an Actionable Role for WNT Pathway Alterations in Prostate Cancer Metastasis. Cancer discovery, 10 (7). pp. 1038-1057. ISSN 2159-8290

Li, Jiayun, Wang, Zhikai, Fearon, Douglas T (May 2020) D40 signaling induces type I interferon and immune control in mouse pancreatic cancer lacking the CXCL12-coat. In: UNSPECIFIED. (Unpublished)

Li, Jin-Jing, Lin, Xiang, Tang, Cheng, Lu, Ying-Qian, Hu, Xinde, Zuo, Erwei, Li, He, Ying, Wenqin, Sun, Yidi, Lai, Lu-Lu, Chen, Hai-Zhu, Guo, Xin-Xin, Zhang, Qi-Jie, Wu, Shuang, Zhou, Changyang, Shen, Xiaowen, Wang, Qifang, Lin, Min-Ting, Ma, Li-Xiang, Wang, Ning, Krainer, Adrian R, Shi, Linyu, Yang, Hui, Chen, Wan-Jin (January 2020) Disruption of splicing-regulatory elements using CRISPR/Cas9 to rescue spinal muscular atrophy in human iPSCs and mice. National Science Review, 7 (1). pp. 92-101. ISSN 2095-5138

Li, Shi-Bin, Borniger, Jeremy C, Yamaguchi, Hiroshi, Hédou, Julien, Gaudilliere, Brice, de Lecea, Luis (September 2020) Hypothalamic circuitry underlying stress-induced insomnia and peripheral immunosuppression. Science Advances, 6 (37). eabc2590-eabc2590. ISSN 2375-2548

Lin, A., Sheltzer, J.M. (June 2020) Discovering and Validating Cancer Genetic Dependencies: Approaches and Pitfalls. Nat Rev Genet. ISSN 1471-0056

Littlepage, Laurie E, Ewald, Andrew J, Alexander, Caroline, Casbon, Amy-Jo, Lu, Pengfei, Kessenbrock, Kai, Provot, Sylvain, Phillips, Joanna J, Kouros-Mehr, Hosein, Chan, Matilda, Welm, Bryan, Lilla, Jennifer N, Chou, Jonathan, Lawson, Devon, Lemieux, George, Plaks, Vicki, Egeblad, Mikala, Sternlicht, Mark (2020) Zena Werb (1945-2020) Obituary. Developmental Cell, 54 (3). pp. 299-301. ISSN 1534-5807

Littlepage, Laurie E, Ewald, Andrew J, Alexander, Caroline, Casbon, Amy-Jo, Lu, Pengfei, Kessenbrock, Kai, Provot, Sylvain, Phillips, Joanna J, Kouros-Mehr, Hosein, Chan, Matilda, Welm, Bryan, Lilla, Jennifer N, Chou, Jonathan, Lawson, Devon, Lemieux, George, Plaks, Vicki, Egeblad, Mikala, Sternlicht, Mark (September 2020) Obituary Zena Werb (1945-2020). Cell Stem Cell, 27 (3). pp. 356-358. ISSN 1934-5909

Liu, H., Jian, L., Xu, J., Zhang, Q., Zhang, M., Jin, M., Peng, Y., Yan, J., Han, B., Liu, J., Gao, F., Liu, X., Huang, L., Wei, W., Ding, Y., Yang, X., Li, Z., Zhang, M., Sun, J., Bai, M., Song, W., Chen, H., Sun, X., Li, W., Lu, Y., Liu, Y., Zhao, J., Qian, Y., Jackson, D., Fernie, A.R., Yan, J. (May 2020) High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize. Plant Cell, 32 (5). pp. 1397-1413. ISSN 1040-4651

Liu, J., Seetharam, A.S., Chougule, K., Ou, S., Swentowsky, K.W., Gent, J.I., Llaca, V., Woodhouse, M.R., Manchanda, N., Presting, G.G., Kudrna, D., Alabady, M., Hirsch, C.N., Fengler, K.A., Ware, D., Michael, T.P., Hufford, M. B., Dawe, R.K. (May 2020) Gapless Assembly of Maize Chromosomes Using Long-Read Technologies. Genome Biology, 21 (1). p. 121. ISSN 1474-7596

Liu, Y., Li, M., Zhang, X., Lu, Y., Gong, H., Yin, J., Chen, Z., Qian, L., Yang, Y., Andolina, I. M., Shipp, S., McLoughlin, N., Tang, S., Wang, W. (August 2020) Hierarchical Representation for Chromatic Processing across Macaque V1, V2, and V4. Neuron, 108 (3). pp. 538-550. ISSN 0896-6273

Londhe, Avinash, Rizvi, Syed Husain Mustafa, Rivera, Keith, Kim, Seung Jun, Pappin, Darryl, Boivin, Ben, Zhang, Fuming, Linhardt, Robert (November 2020) Characterization of Peptide Activators of Protein Tyrosine Phosphatase 1B. In: 27th Annual Conference of the Society-for-Redox-Biology-and-Medicine (SfRBM).

Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (February 2020) ZEBrA - Zebra finch Expression Brain Atlas: a resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol. ISSN 0021-9967 (Public Dataset)

Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (August 2020) ZEBrA: Zebra finch Expression Brain Atlas-A resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol, 528 (12). pp. 2099-2131. ISSN 0021-9967

Lowe, S; Zhang, L; Chen, C (October 2020) Compositions and methods for treating acute myeloid leukemia. .

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (October 2020) Replicability of spatial gene expression atlas data from the adult mouse brain. bioRxiv. (Unpublished)

Lukey, M. J., Greene, K.S., Cerione, R.A. (March 2020) Lysine succinylation and SIRT5 couple nutritional status to glutamine catabolism. Mol Cell Oncol, 7 (3). p. 1735284. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Ma, Wai Kit, Scharner, Juergen, Costa, Ana SH, Jeong, Hyun Yun, Jackson, Michaela, Rigo, Frank, Bennett, C Frank, Krainer, Adrian R (September 2020) ASO-basedPKMSplice-switching Therapy Inhibits Hepatocellular Carcinoma Cell Growth. BioRxiv. (Unpublished)

Majka, P., Bai, S., Bakola, S., Bednarek, S., Chan, J. M., Jermakow, N., Passarelli, L., Reser, D. H., Theodoni, P., Worthy, K. H., Wang, X. J., Wojcik, D. K., Mitra, P. P., Rosa, M. G. P. (February 2020) Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nat Commun, 11 (1). p. 1133. ISSN 2041-1723 (Public Dataset)

Marchione, D. M., Ilieva, I., Devins, K., Sharpe, D., Pappin, D. J., Garcia, B. A., Wilson, J. P., Wojcik, J. B. (January 2020) HYPERsol: High-Quality Data from Archival FFPE Tissue for Clinical Proteomics. J Proteome Res, 19 (2). pp. 973-983. ISSN 1535-3893 (Public Dataset)

Marshall, Dylan, Wang, Haobo, Stiffler, Michael, Dauparas, Justas, Koo, Peter, Ovchinnikov, Sergey (November 2020) The structure-fitness landscape of pairwise relations in generative sequence models. BioRxiv. (Unpublished)

Martinez, M. A. Q., Kinney, B. A., Medwig-Kinney, T. N., Ashley, G., Ragle, J. M., Johnson, L., Aguilera, J., Hammell, C. M., Ward, J. D., Matus, D. Q. (January 2020) Rapid Degradation of Caenorhabditis elegans Proteins at Single-Cell Resolution with a Synthetic Auxin. G3 (Bethesda, Md.), 10 (1). pp. 267-280. ISSN 21601836 (ISSN) (Public Dataset)

Masset, P., Ott, T., Lak, A., Hirokawa, J., Kepecs, A. (June 2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182. ISSN 0092-8674

Mathew, G., Trotman, L. C. (June 2020) Competence against insufficiency: Why are men mostly safe from a rare and deadly prostate cancer? Journal of Experimental Medicine, 217 (6). e20200087. ISSN 0022-1007

Matho, Katherine, Huilgol, Dhananjay, Galbavy, William, He, Miao, Kim, Gukhan, An, Xu, Lu, Jiangteng, Wu, Priscilla, Di Bella, Daniela, Shetty, Ashwin, Palaniswamy, Ramesh, Hatfield, Joshua, Raudales, Ricardo, Narasimhan, Arun, Gamache, Eric, Levine, Jesse, Tucciarone, Jason, Szelenyi, Eric, Harris, Julie, Mitra, Partha, Osten, Pavel, Arlotta, Paola, Huang, Josh (April 2020) Genetic dissection of glutamatergic neuron subpopulations and developmental trajectories in the cerebral cortex. bioRxiv. (Unpublished)

McCandlish, D. M., Lang, G.I. (July 2020) Evolution of Epistasis: Small Populations Go Their Separate Ways. Journal of Molecular Evolution, 88 (5). pp. 418-420.

Mencia-Trinchant, Nuria, MacKay, Matthew J, Chin, Christopher, Afshinnekoo, Ebrahim, Foox, Jonathan, Meydan, Cem, Butler, Daniel, Mozsary, Christopher, Vernice, Nicholas A, Darby, Charlotte, Schatz, Michael C, Bailey, Susan M, Melnick, Ari M, Guzman, Monica L, Bolton, Kelly, Braunstein, Lior Z, Garrett-Bakelman, Francine, Levine, Ross L, Hassane, Duane C, Mason, Christopher E (December 2020) Clonal Hematopoiesis Before, During, and After Human Spaceflight. Cell Reports, 33 (10). p. 108458. ISSN 2211-1247

Meyer, H. V., Dawes, T. J. W., Serrani, M., Bai, W., Tokarczuk, P., Cai, J., de Marvao, A., Henry, A., Lumbers, R. T., Gierten, J., Thumberger, T., Wittbrodt, J., Ware, J. S., Rueckert, D., Matthews, P. M., Prasad, S. K., Costantino, M. L., Cook, S. A., Birney, E., O'Regan, D. P. (August 2020) Genetic and functional insights into the fractal structure of the heart. Nature, 584 (7822). pp. 589-594. ISSN 0028-0836

Michael, Todd P, Ernst, Evan, Hartwick, Nolan, Chu, Philomena, Bryant, Douglas, Gilbert, Sarah, Ortleb, Stefan, Baggs, Erin L, Sree, K Sowjanya, Appenroth, Klaus J, Fuchs, Joerg, Jupe, Florian, Sandoval, Justin P, Krasileva, Ksenia V, Borisjuk, Ljudmylla, Mockler, Todd C, Ecker, Joseph R, Martienssen, Robert A, Lam, Eric (December 2020) Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Research, 31 (2). pp. 225-238. ISSN 1088-9051

Michalski, K., Syrjanen, J. L., Henze, E., Kumpf, J., Furukawa, H., Kawate, T. (February 2020) The cryo-EM structure of a pannexin 1 reveals unique motifs for ion selection and inhibition. Elife, 9. ISSN 2050-084x

Middleton, EA, He, X.-Y., Denorme, F, Campbell, RA, Ng, D., Salvatore, S., Mostyka, M, Baxter-Stoltzfus, A., Borczuk, A., Loda, M., Cody, MJ, Manne, BK, Portier, I, Harris, E, Petrey, AC, Beswick, EJ, Caulin, AF, Iovino, A, Abegglen, LM, Weyrich, AS, Rondina, MT, Egeblad, M., Schiffman, JD, Con Yost, C (June 2020) Neutrophil Extracellular Traps (NETs) Contribute to Immunothrombosis in COVID-19 Acute Respiratory Distress Syndrome. Blood. ISSN 0006-4971

Miyabayashi, Koji, Baker, Lindsey A, Deschênes, Astrid, Traub, Benno, Caligiuri, Giuseppina, Plenker, Dennis, Alagesan, Brinda, Belleau, Pascal, Li, Siran, Kendall, Jude, Jang, Gun Ho, Kawaguchi, Risa Karakida, Somerville, Tim DD, Tiriac, Hervé, Hwang, Chang-Il, Burkhart, Richard A, Roberts, Nicholas J, Wood, Laura D, Hruban, Ralph H, Gillis, Jesse, Krasnitz, Alexander, Vakoc, Christopher R, Wigler, Michael, Notta, Faiyaz, Gallinger, Steven, Park, Youngkyu, Tuveson, David A (October 2020) Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes. Cancer Discovery, 10 (10). pp. 1566-1589. ISSN 2159-8274

Moffitt, A. B., Spector, M. S., Andrews, P., Kendall, J., Alexander, J., Stepansky, A., Ma, B., Kolitz, J., Chiorazzi, N., Allen, S.L., Krasnitz, A., Wigler, M., Levy, D., Wang, Z. (February 2020) Multiplex Accurate Sensitive Quantitation (MASQ) With Application to Minimal Residual Disease in Acute Myeloid Leukemia. Nucleic Acids Research, 48 (7). e40. ISSN 0305-1048 (Public Dataset)

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A., Lipson, M. (February 2020) Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation. Nat Biomed Eng, 4 (2). pp. 223-231. ISSN 2157-846x (Public Dataset)

Monje, M., Borniger, J., D'Silva, N.J., Deneen, B., Dirks, P.B., Fattahi, F., Frenette, P.S., Garzia, L., Gutmann, D.H., Hanahan, D., Hervey-Jumper, S.L., Hondermarck, H., Hurov, J.B., Kepecs, A., Knox, S.M., Lloyd, A.C., Magnon, C., Saloman, J.L., Segal, R.A., Sloan, E.K., Sun, X., Taylor, M.D., Tracey, K.J., Trotman, L. C., Tuveson, D. A., Wang, T.C., White, R.A., Winkler, F. (April 2020) Roadmap for the Emerging Field of Cancer Neuroscience. Cell, 181 (2). pp. 219-222. ISSN 0092-8674

Moore, J. E., Purcaro, M. J., Pratt, H. E., Epstein, C. B., Shoresh, N., Adrian, J., Kawli, T., Davis, C. A., Dobin, A., Kaul, R., Halow, J., Van Nostrand, E. L., Freese, P., Gorkin, D. U., Shen, Y., He, Y., Mackiewicz, M., Pauli-Behn, F., Williams, B. A., Mortazavi, A., Keller, C. A., Zhang, X. O., Elhajjajy, S. I., Huey, J., Dickel, D. E., Snetkova, V., Wei, X., Wang, X., Rivera-Mulia, J. C., Rozowsky, J., Zhang, J., Chhetri, S. B., Zhang, J., Victorsen, A., White, K. P., Visel, A., Yeo, G. W., Burge, C. B., Lécuyer, E., Gilbert, D. M., Dekker, J., Rinn, J., Mendenhall, E. M., Ecker, J. R., Kellis, M., Klein, R. J., Noble, W. S., Kundaje, A., Guigó, R., Farnham, P. J., Cherry, J. M., Myers, R. M., Ren, B., Graveley, B. R., Gerstein, M. B., Pennacchio, L. A., Snyder, M. P., Bernstein, B. E., Wold, B., Hardison, R. C., Gingeras, T. R., Stamatoyannopoulos, J. A., Weng, Z. (July 2020) Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature, 583 (7818). pp. 699-710. ISSN 0028-0836 (Print)0028-0836

Moral, J.A., Leung, J., Rojas, L.A., Ruan, J., Zhao, J., Sethna, Z., Ramnarain, A., Gasmi, B., Gururajan, M., Redmond, D., Askan, G., Bhanot, U., Elyada, E., Park, Y., Tuveson, D. A., Gonen, M., Leach, S.D., Wolchok, J.D., DeMatteo, R. P., Merghoub, T., Balachandran, V. P. (February 2020) ILC2s Amplify PD-1 Blockade by Activating Tissue-Specific Cancer Immunity. Nature, 579 (7797). pp. 130-135. ISSN 0028-0836 (Public Dataset)

Munir, Hafsa, Jones, James O, Janowitz, Tobias, Martins, Carla P, Welsh, Sarah J, Shields, Jacqueline D (January 2020) Stromal Amyloid β drives Neutrophil extracellular trap formation to augment tumour growth. BioRxiv. (Unpublished)

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine, Wang, Quanxin, Chen, Xiaoyin, Foster, Nicholas, Narasimhan, Arun, Li, Anan, Hirokawa, Karla, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael, Chon, Uree, Wheeler, Diek, Li, Xiangning, Wang, Yun, Kelly, Kathleen, An, Xu, Attili, Sarojini, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D’Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter, Gou, Lin, Hahn, Joel, Hatfield, Joshua, Hintiryan, Houri, Huang, Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Liu, Lijuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Naeemi, Maitham, Nicovich, Philip, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong, Wakemen, Wayne, Wang, Yimin, Xie, Peng, Yao, Shenqin, Yuan, Jin, Zhu, Muye, Ng, Lydia, Zhang, Li, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James, Kim, Yongsoo, Peng, Hanchuan, Chuang, Kwanghun, Yang, William, Luo, Qingming, Mitra, Partha, Zador, Anthony, Zeng, Hongkui, Ascoli, Giorgio, Huang, Josh, Osten, Pavel, Harris, Julie, Dong, Hong-Wei (October 2020) Cellular Anatomy of the Mouse Primary Motor Cortex. BioRxiv. (Unpublished)

Nattestad, M., Aboukhalil, R., Chin, C. S., Schatz, M. C. (August 2020) Ribbon: Intuitive visualization for complex genomic variation. Bioinformatics. ISSN 1367-4803

Nechooshtan, G., Yunusov, D., Chang, K., Gingeras, T. R. (August 2020) Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment. Nucleic Acids Res, 48 (14). pp. 8035-8049. ISSN 0305-1048 (Print)0305-1048

Nemec, P., Osten, P. (January 2020) The evolution of brain structure captured in stereotyped cell count and cell type distributions. Curr Opin Neurobiol, 60. pp. 176-183. ISSN 0959-4388

Noble, Karen, Owens, Joanna, Andre, Fabrice, Bakhoum, Samuel F, Loi, Sherene, Reinhardt, Hans Christian, Tuveson, David, Swanton, Charles (January 2020) Securing the future of the clinician-scientist. Nature Cancer, 1 (2). pp. 139-141. ISSN 2662-1347

O'Neill, K., Brocks, D., Hammell, M. G. (March 2020) Mobile Genomics: Tools and Techniques for Tackling Transposons. Philos Trans R Soc Lond B Biol Sci, 375 (1795). ISSN 0962-8436

Odoemene, O., Pisupati, S., Nguyen, H., Churchland, A. K. (January 2020) Dataset from: Visual evidence accumulation guides decision-making in unrestrained mice. [Dataset]

Oni, T. E., Biffi, G., Baker, L. A., Hao, Y., Tonelli, C., Somerville, T. D. D., Deschênes, A., Belleau, P., Hwang, C. I., Sánchez-Rivera, F. J., Cox, H., Brosnan, E., Doshi, A., Lumia, R. P., Khaledi, K., Park, Y., Trotman, L. C., Lowe, S. W., Krasnitz, A., Vakoc, C. R., Tuveson, D. A. (July 2020) SOAT1 promotes mevalonate pathway dependency in pancreatic cancer. J Exp Med, 217 (9). ISSN 0022-1007

Oni, Tobiloba E, Bautista, Carmelita, Merrill, Joseph R, Goos, Jeroen ACM, Rivera, Keith D, Miyabayashi, Koji, Biffi, Giulia, Garcia, Libia, Plenker, Dennis, Patel, Hardik, Elyada, Ela, Samaritano, Maria, Yu, Kenneth H, Pappin, Darryl J, Goggins, Michael G, Hruban, Ralph H, Lewis, Jason S, Lyons, Scott K, Yeh, Johannes T, Tuveson, David A (September 2020) Detection of incipient pancreatic cancer with novel tumor-specific antibodies in mouse models. BioRxiv. (Unpublished)

Oppenheim, S., Cao, X., Rueppel, O., Krongdang, S., Phokasem, P., DeSalle, R., Goodwin, S., Xing, J., Chantawannakul, P., Rosenfeld, J. A. (January 2020) Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata. Genome Biol Evol, 12 (1). pp. 3677-3683. ISSN 1759-6653 (Public Dataset)

Ordovas-Montanes, J., Beyaz, S., Rakoff-Nahoum, S., Shalek, A. K. (February 2020) Distribution and storage of inflammatory memory in barrier tissues. Nat Rev Immunol, 20 (5). pp. 308-320. ISSN 1474-1733

Ou, S. J., Liu, J. N., Chougule, K. M., Fungtammasan, A., Seetharam, A.S., Stein, J. C., Llaca, V., Manchanda, N., Gilbert, A. M., Wei, S. R., Chin, C. S., Hufnagel, D. E., Pedersen, S., Snodgrass, S. J., Fengler, K., Woodhouse, M., Walenz, B. P., Koren, S., Phillippy, A. M., Hannigan, B. T., Dawe, R. K., Hirsch, C. N., Hufford, M. B., Ware, D. (May 2020) Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature Communications, 11 (1). p. 2288. ISSN 2041-1723

Palatnick, A., Zhou, B., Ghedin, E., Schatz, M. C. (December 2020) iGenomics: Comprehensive DNA sequence analysis on your Smartphone. Gigascience, 9 (12). ISSN 2047-217x

Pang, C. N. I., Ballouz, S., Weissberger, D., Thibaut, L. M., Hamey, J. J., Gillis, J., Wilkins, M. R., Hart-Smith, G. (August 2020) Analytical guidelines for co-fractionation mass spectrometry obtained through global profiling of gold standard Saccharomyces cerevisiae protein complexes. Mol Cell Proteomics, 19 (11). pp. 1876-1895. ISSN 1535-9476

Parent, J. S., Borges, F., Shimada, A., Martienssen, R. A. (June 2020) Small RNA Function in Plants: From Chromatin to the Next Generation. Cold Spring Harbor Symposia on Quantitative Biology. ISSN 00917451

Parry, G, Provart, NJ, Brady, SM, Uzilday, B, Adams, K, Araújo, W, Aubourg, S, Baginsky, S, Bakker, E, Bärenfaller, K, Batley, J, Beale, M, Beilstein, M, Belkhadir, Y, Mendel, G, Berardini, T, Bergelson, J, Blanco-Herrera, F, Brady, S, Braun, HP, Briggs, S, Brownfield, L, Cardarelli, M, Castellanos-Uribe, M, Coruzzi, G, Dassanayake, M, De Jaeger, G, Dilkes, B, Doherty, C, Ecker, J, Edger, P, Edwards, D, El Kasmi, F, Eriksson, M, Exposito-Alonso, M, Falter-Braun, P, Fernie, A, Ferro, M, Fiehn, O, Friesner, J, Greenham, K, Guo, Y, Hamann, T, Hancock, A, Hauser, MT, Heazlewood, J, Ho, CH, Hõrak, H, Huala, E, Hwang, I, Iuchi, S, Jaiswal, P, Jakobson, L, Jiang, Y, Jiao, Y, Jones, A, Kadota, Y, Khurana, J, Kliebenstein, D, Knee, E, Kobayashi, M, Koch, M, Krouk, G, Larson, T, Last, R, Lepiniec, L, Li, S, Lurin, C, Lysak, M, Maere, S, Malinowski, R, Maumus, F, May, S, Mayer, K, Mendoza-Cozatl, D, Mendoza-Poudereux, I, Micol, JL, Millar, H, Mock, HP, Mukhtar, K, Mukhtar, S, Murcha, M, Nakagami, H, Nakamura, Y, Nicolov, L, Nikolau, B, Nowack, M, Nunes-Nesi, A, Palmgren, M, Parry, G, Patron, N, Peck, S, Pedmale, U, Perrot-Rechenmann, C, Pieruschka, R, Pío-Beltrán, J, Pires, JC, Provart, N, Rajjou, L, Reiser, L (July 2020) Current status of the multinational Arabidopsis community. Plant Direct, 4 (7). ISSN 2475-4455

Perez, K, Cleary, J. M., Karasic, T. B., Raghaven, S., Rahma, O. E., Nowak, J. A., Borazanci, E. H., Downes, Michael, Drebin, Jeffrey A, Tuveson, D. A., Ting, D. T., Moffitt, R. A., Yeh, J. J., Aguirre, A. J., Evans, R., Von Hoff, D. D., Odwyer, P. J., Wolpin, B. M. (February 2020) Vitamin D receptor agonist paricalcitol plus gemcitabine and nab-paclitaxel in patients with metastatic pancreatic cancer. Journal of Clinical Oncology, 38 (4). ISSN 0732-183X

Perry, Lauren M, Loehfelm, Thomas, Pillai, Rex, Pan, Dana Y, Tejaswi, Sooraj, Gholami, Sepideh (July 2020) Shifting the Treatment Paradigm for Pancreaticoportal Fistula Causing Hepatic Necrosis. Digestive Diseases and Sciences, 65 (7). pp. 1955-1959. ISSN 0163-2116

Perry, Lauren M, Pan, Dana, Loehfelm, Thomas W, Tejaswi, Sooraj, Gholami, Sepideh (December 2020) Pancreaticoportal Fistula Causing Hepatic Necrosis Treated With Pancreatic Duct Stenting. American Journal of Gastroenterology, 115 (12). p. 1933. ISSN 0002-9270

Perszyk, R. E., Myers, S. J., Yuan, H., Gibb, A. J., Furukawa, H., Sobolevsky, A. I., Traynelis, S. F. (August 2020) Hodgkin-Huxley-Katz Prize Lecture: Genetic and pharmacological control of glutamate receptor channel through a highly conserved gating motif. J Physiol, 598 (15). pp. 3071-3083. ISSN 0022-3751

Piccart, Martine J, Hilbers, Florentine S, Bliss, Judith M, Caballero, Carmela, Frank, Elizabeth S, Renault, Patrick, Naït Kaoudjt, Rachida, Schumacher, Eva, Spears, Patricia A, Regan, Meredith M, Gelber, Richard D, Davidson, Nancy E, Norton, Larry, Winer, Eric P, BIG-NABCG Collaboration (December 2020) Road Map to Safe and Well-Designed De-escalation Trials of Systemic Adjuvant Therapy for Solid Tumors. Journal of Clinical Oncology, 38 (34). pp. 4120-4129. ISSN 0732-183X

Pisupati, S., Chartarifsky, L., Khanal, A., Churchland, A. K. (February 2020) Dataset from: Lapses in perceptual decisions reflect exploration. [Dataset]

Poirier, J. T., George, J., Owonikoko, T. K., Berns, A., Brambilla, E., Byers, L. A., Carbone, D., Chen, H. J., Christensen, C. L., Dive, C., Farago, A. F., Govindan, R., Hann, C., Hellmann, M. D., Horn, L., Johnson, J. E., Ju, Y. S., Kang, S., Krasnow, M., Lee, J., Lee, S. H., Lehman, J., Lok, B., Lovly, C., MacPherson, D., McFadden, D., Minna, J., Oser, M., Park, K., Park, K. S., Pommier, Y., Quaranta, V., Ready, N., Sage, J., Scagliotti, G., Sos, M. L., Sutherland, K. D., Travis, W. D., Vakoc, C. R., Wait, S. J., Wistuba, I., Wong, K. K., Zhang, H., Daigneault, J., Wiens, J., Rudin, C. M., Oliver, T. G. (April 2020) New Approaches to SCLC Therapy: From the Laboratory to the Clinic. J Thorac Oncol, 15 (4). pp. 520-540. ISSN 1556-0864 (Print)1556-0864

Poirier, J. T., George, J., Owonikoko, T. K., Berns, A., Brambilla, E., Byers, L. A., Carbone, D., Chen, H. J., Christensen, C. L., Dive, C., Farago, A. F., Govindan, R., Hann, C., Hellmann, M. D., Horn, L., Johnson, J. E., Ju, Y. S., Kang, S., Krasnow, M., Lee, J., Lee, S. H., Lehman, J., Lok, B., Lovly, C., MacPherson, D., McFadden, D., Minna, J., Oser, M., Park, K., Park, K. S., Pommier, Y., Quaranta, V., Ready, N., Sage, J., Scagliotti, G., Sos, M. L., Sutherland, K. D., Travis, W. D., Vakoc, C. R., Wait, S. J., Wistuba, I., Wong, K. K., Zhang, H., Daigneault, J., Wiens, J., Rudin, C. M., Oliver, T. G. (February 2020) New approaches to small cell lung cancer therapy : from the laboratory to the clinic. J Thorac Oncol. ISSN 1556-0864

Pollatou, A., Ferrante, D. D. (August 2020) Out-of-focus brain image detection in serial tissue sections. J Neurosci Methods, 345. p. 108852. ISSN 0165-0270

Polyanskaya, Sofya A (July 2020) A Nuclear Phosphatase-Kinase Signaling Complex That Supports Acute Myeloid Leukemia. PhD thesis, Cold Spring Harbor Laboratory.

Rahman, M. A., Krainer, A. R., Abdel-Wahab, O. (January 2020) SnapShot: Splicing Alterations in Cancer. Cell, 180 (1). 208-208.e1. ISSN 0092-8674

Rahman, M. A., Lin, K. T., Bradley, R. K., Abdel-Wahab, O., Krainer, A. R. (March 2020) Recurrent SRSF2 mutations in MDS affect both splicing and NMD. Genes Dev, 34 (5-6). pp. 413-427. ISSN 0890-9369

Rahman, M.A., Nasrin, F., Bhattacharjee, S., Nandi, S. (May 2020) Hallmarks of Splicing Defects in Cancer: Clinical Applications in the Era of Personalized Medicine. Cancers (Basel), 12 (6). E1381. ISSN 2072-6694

Ranallo-Benavidez, Rhyker, Lemmon, Zachary, Soyk, Sebastian, Aganezov, Sergey, Salerno, William, McCoy, Rajiv, Lippman, Zachary, Schatz, Michael, Sedlazeck, Fritz (August 2020) SVCollector: Optimized sample selection for cost-efficient long-read population sequencing. BioRxiv. (Unpublished)

Ranallo-Benavidez, T.R., Jaron, K.S., Schatz, M. C. (March 2020) GenomeScope 2.0 and Smudgeplot for Reference-Free Profiling of Polyploid Genomes. Nat Commun, 11 (1432). pp. 1-10. ISSN 2041-1723 (Public Dataset)

Ravindran, Sandeep (June 2020) QnAs with Zachary B. Lippman. Proceedings of the National Academy of Sciences of USA.

Reichberg, S. B., Mitra, P. P., Haghamad, A., Ramrattan, G., Crawford, J. M., Berry, G. J., Davidson, K. W., Drach, A., Duong, S., Juretschko, S., Maria, N. I., Yang, Y., Ziemba, Y. C. (July 2020) Rapid Emergence of SARS-CoV-2 in the Greater New York Metropolitan Area: Geolocation, Demographics, Positivity Rates, and Hospitalization for 46,793 Persons Tested by Northwell Health. Clin Infect Dis. ISSN 1058-4838

Rein, B., Tan, T., Yang, F., Wang, W., Williams, J., Zhang, F., Mills, A., Yan, Z. (February 2020) Reversal of Synaptic and Behavioral Deficits in a 16p11.2 Duplication Mouse Model via Restoration of the GABA Synapse Regulator Npas4. Mol Psychiatry. ISSN 1359-4184

Replogle, J. M., Zhou, W., Amaro, A. E., McFarland, J. M., Villalobos-Ortiz, M., Ryan, J., Letai, A., Yilmaz, O., Sheltzer, J., Lippard, S. J., Ben-David, U., Amon, A. (December 2020) Aneuploidy increases resistance to chemotherapeutics by antagonizing cell division. Proc Natl Acad Sci U S A, 117 (48). pp. 30566-30576. ISSN 0027-8424 (Print)0027-8424

Rey-Suarez, Ivan, Wheatley, Brittany A, Koo, Peter, Bhanja, Anshuman, Shu, Zhou, Mochrie, Simon, Song, Wenxia, Shroff, Hari, Upadhyaya, Arpita (January 2020) WASP family proteins regulate the mobility of the B cell receptor during signaling activation. Nature Communications, 11 (1). p. 439. ISSN 2041-1723

Robine, Nicolas, Froeling, Fieke, Hubert, Benjamin, Chu, Timothy, Chandler, Ashlea, Zody, Michael C, Oschwald, Dayna M, Varmus, Harold E, Sawyers, Charles, Tuveson, David (August 2020) Polyethnic-1000: Advancing cancer genomics by studying ethnically diverse, underserved patient populations in New York. In: AACR Annual Meeting.

Robine, Nicolas, Froeling, Fieke, Hubert, Benjamin, Zody, Michael C, Oschwald, Dayna, Varmus, Harold, Sawyers, Charles, Tuveson, David (June 2020) Polyethnic-1000: Advancing cancer genomics by studying ethnically diverse, underserved patient populations in New York. In: Eleventh AACR Conference on The Science of Cancer Health Disparities in Racial/Ethnic Minorities and the Medically Underserved.

Rupert, D.D., Nowlan, A.C., Tam, O. H., Hammell, M. G. (May 2020) Ten Simple Rules for Running a Successful women-in-STEM Organization on an Academic Campus. PLoS Comput Biol, 16 (5). e1007754. ISSN 1553-734x

Rupert, Deborah, Nowlan, Alexandra, Tam, Oliver, Hammell, Molly Gale (February 2020) Methods for Running a Successful Women-in-STEM Organization on an Academic Campus. bioRxiv. (Unpublished)

Sahai, E., Astsaturov, I., Cukierman, E., DeNardo, D. G., Egeblad, M., Evans, R. M., Fearon, D., Greten, F. R., Hingorani, S. R., Hunter, T., Hynes, R. O., Jain, R. K., Janowitz, T., Jorgensen, C., Kimmelman, A. C., Kolonin, M. G., Maki, R. G., Powers, R. S., Pure, E., Ramirez, D. C., Scherz-Shouval, R., Sherman, M. H., Stewart, S., Tlsty, T. D., Tuveson, D. A., Watt, F. M., Weaver, V., Weeraratna, A. T., Werb, Z. (March 2020) A framework for advancing our understanding of cancer-associated fibroblasts. Nat Rev Cancer, 20 (3). pp. 174-186. ISSN 1474-175x

Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A., Paninski, L. (April 2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16 (4). e1007791. ISSN 1553-734x

Scheben, Armin, Ramos, Olivia Mendivil, Kramer, Melissa, Goodwin, Sara, Oppenheim, Sara, Becker, Daniel, Schatz, Michael, Simmons, Nancy, Siepel, Adam, McCombie, Richard (September 2020) Unraveling molecular mechanisms of immunity and cancer-resistance using the genomes of the Neotropical bats Artibeus jamaicensis and Pteronotus mesoamericanus. BioRxiv. (Unpublished)

Schröder, C, Klindt, D, Strauss, S, Franke, K, Bethge, M, Euler, T, Berens, P (January 2020) System identification with biophysical constraints: A circuit model of the inner retina. In: Advances in Neural Information Processing Systems.

Seppala, Toni T, Zimmerman, Jacquelyn W, Rozich, Noah, Blair, Alex, Javed, Ammar, Cameron, John L, Burns, William R, He, Jin, Tuveson, David, Wolfgang, Christopher L, Ryan, David P, Kimmelman, Alec, Herman, Joseph M, Messersmith, Wells, Hong, Theodore S, Ting, David T, Burkhart, Richard Andrew (August 2020) Patient-derived organoids may facilitate precision medicine in pancreatic cancer: Demonstrating feasibility in the context of a multi-center clinical trial. In: AACR Annual Meeting.

Seppälä, Toni T, Zimmerman, Jacquelyn W, Sereni, Elisabetta, Plenker, Dennis, Suri, Reecha, Rozich, Noah, Blair, Alex, Thomas, Dwayne L, Teinor, Jonathan, Javed, Ammar, Patel, Hardik, Cameron, John L, Burns, William R, He, Jin, Tuveson, David A, Jaffee, Elizabeth M, Eshleman, James, Szabolcs, Annamaria, Ryan, David P, Ting, David T, Wolfgang, Christopher L, Burkhart, Richard A (September 2020) Patient-derived Organoid Pharmacotyping is a Clinically Tractable Strategy for Precision Medicine in Pancreatic Cancer. Annals of Surgery, 272 (3). pp. 427-435. ISSN 0003-4932

Sheltzer, J. M., Visintin, R. (December 2020) Angelika Amon (1967-2020). Science, 370 (6522). p. 1276. ISSN 0036-8075

Shen, Y., Dasgupta, S., Navlakha, S. (May 2020) Habituation as a Neural Algorithm for Online Odor Discrimination. Proceedings of the National Academy of Sciences of the United States of America, 117 (22). pp. 12402-12410. ISSN 0027-8424

Shen, Y., Dasgupta, S., Navlakha, S. (August 2020) Reply to Semelidou and Skoulakis: "Short-term" habituation has multiple distinct mechanisms. Proc Natl Acad Sci U S A, 117 (34). pp. 20373-20374. ISSN 0027-8424

Sheng, L., Rigo, F., Bennett, C. F., Krainer, A. R., Hua, Y. (April 2020) Comparison of the Efficacy of MOE and PMO Modifications of Systemic Antisense Oligonucleotides in a Severe SMA Mouse Model. Nucleic Acids Research, 6 (48). pp. 2853-2865. ISSN 0305-1048 (Public Dataset)

Shenstone, E., Lippman, Z., Van Eck, J. (September 2020) A review of nutritional properties and health benefits of Physalis species. Plant Foods Hum Nutr, 75 (3). pp. 316-325. ISSN 0921-9668

Shi, Yan-Liang, Steinmetz, Nicholas A., Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (September 2020) Influence of On-Off dynamics and selective attention on the spatial pattern of correlated variability in neocortex. bioRxiv. (Unpublished)

Shuvaev, S, Starosta, S, Kvitsiani, D, Kepecs, A, Koulakov, A (January 2020) R-learning in actor-critic model offers a biologically relevant mechanism for sequential decision-making. In: NeurIPS 2020.

Sindhwani, S., Syed, A.M., Ngai, J., Kingston, B.R., Maiorino, L., Rothschild, J., MacMillan, P., Zhang, Y., Rajesh, N.U., Hoang, T., Wu, J.L.Y., Wilhelm, S., Zilman, A., Gadde, S., Sulaiman, A., Ouyang, B., Lin, Z., Wang, L., Egeblad, M., Chan, W.C.W. (January 2020) The entry of nanoparticles into solid tumours. Nat Mater. ISSN 1476-1122 (Public Dataset)

Sinnakannu, J. R., Lee, K. L., Cheng, S., Li, J., Yu, M., Tan, S. P., Ong, C. C. H., Li, H., Than, H., Anczukow-Camarda, O., Krainer, A. R., Roca, X., Rozen, S. G., Iqbal, J., Yang, H., Chuah, C., Ong, S. T. (February 2020) SRSF1 mediates cytokine-induced impaired imatinib sensitivity in chronic myeloid leukemia. Leukemia, 34 (7). pp. 1787-1798. ISSN 0887-6924

Slepicka, P. F., Somasundara, A. V. H., Dos Santos, C. O. (October 2020) The molecular basis of mammary gland development and epithelial differentiation. Semin Cell Dev Biol. ISSN 1084-9521

Smedley, C. J., Li, G., Barrow, A. S., Gialelis, T. L., Giel, M. C., Ottonello, A., Cheng, Y., Kitamura, S., Wolan, D. W., Sharpless, K. B., Moses, J. E. (April 2020) Diversity Oriented Clicking (DOC): Divergent Synthesis of SuFExable Pharmacophores from 2-Substituted-Alkynyl-1-Sulfonyl Fluoride (SASF) Hubs. Angew Chem Int Ed Engl. ISSN 1433-7851

Smith, J.C., Sausville, E. L., Girish, V., Yuan, M.L., Vasudevan, A., John, K.M., Sheltzer, J. M. (May 2020) Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract. Dev Cell, 53 (5). 514-529.e3. ISSN 1534-5807

Smith, T., Bock, H., Hewlett, J., Lazare, J., Madabushi, A., Mann, C., Micklos, D., Nash, B., Porter, S., Rao, P., Read, R., Tubon, T., Wolslegel, K., Fletcher, L. (August 2020) Introducing the NSF-ATE InnovATEBIO National Biotechnology Education Center. J Biomol Tech, 31 (Suppl). S29-S30. ISSN 1524-0215 (Print)1524-0215

Snyder, M. P., Gingeras, T. R., Moore, J. E., Weng, Z., Gerstein, M. B., Ren, B., Hardison, R. C., Stamatoyannopoulos, J. A., Graveley, B. R., Feingold, E. A., Pazin, M. J., Pagan, M., Gilchrist, D. A., Hitz, B. C., Cherry, J. M., Bernstein, B. E., Mendenhall, E. M., Zerbino, D. R., Frankish, A., Flicek, P., Myers, R. M. (July 2020) Perspectives on ENCODE. Nature, 583 (7818). pp. 693-698. ISSN 0028-0836 (Print)0028-0836

Somerville, T. D. D., Biffi, G., DaBler-Plenker, J., Hur, S.K., He, X.-Y., Vance, K.E., Miyabayashi, K., Xu, Y., Maia-Silva, D., Klingbeil, O., Demerdash, O. E., Preall, J. B., Hollingsworth, M. A., Egeblad, M., Tuveson, D. A., Vakoc, C. R. (April 2020) Squamous trans-differentiation of pancreatic cancer cells promotes stromal inflammation. Elife, 9. e53381. ISSN 2050-084x (Public Dataset)

Somerville, T. D. D., Xu, Y., Wu, X. S., Maia-Silva, D., Hur, S. K., de Almeida, L. M. N., Preall, J. B., Koo, P. K., Vakoc, C. R. (May 2020) ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancer. Proc Natl Acad Sci U S A, 117 (21). pp. 11471-11482. ISSN 0027-8424 (Print)0027-8424

Soyk, S., Benoit, M., Lippman, Z. B. (September 2020) New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation. Annu Rev Genet, 54. pp. 287-307. ISSN 0066-4197

Stec, N., Doerfel, K., Hills-Muckey, K., Ettorre, V. M., Ercan, S., Keil, W., Hammell, C. M. (December 2020) An Epigenetic Priming Mechanism Mediated by Nutrient Sensing Regulates Transcriptional Output during C. elegans Development. Curr Biol. ISSN 0960-9822

Stec, Natalia, Doerfel, Katja, Hills-Muckey, Kelly, Ettorre, Victoria M, Ercan, Sevinc, Keil, Wolfgang, Hammell, CM (September 2020) An Epigenetic Priming Mechanism Mediated by Nutrient Sensing Regulates Transcriptional Output. BioRxiv. (Unpublished)

Stephenson-Jones, M., Bravo-Rivera, C., Ahrens, S., Furlan, A., Xiao, X., Fernandes-Henriques, C., Li, B. (January 2020) Opposing Contributions of GABAergic and Glutamatergic Ventral Pallidal Neurons to Motivational Behaviors. Neuron. ISSN 0896-6273

Sultan, Sam, Snider, Joseph, Conn, Adam, Li, Mao, Topp, Christopher N, Navlakha, Saket (2020) A Statistical Growth Property of Plant Root Architectures. Plant Phenomics, 2020. p. 2073723. ISSN 2643-6515

Sun, Lijuan, Kees, Tim, Almeida, Ana Santos, Liu, Bodu, He, Xue-Yan, Ng, David, Spector, David, McNeish, Iain A, Gimotty, Phyllis, Adams, Sylvia, Egeblad, Mikala (July 2020) Activating a collaborative innate-adaptive immune response to control breast and ovarian cancer metastasis. BioRxiv. (Unpublished)

Sun, Yonghao, Dong, Liang, Zhang, Ying, Lin, Da, Xu, Weize, Ke, Changxiong, Han, Linqian, Deng, Lulu, Li, Guoliang, Jackson, David, Li, Xingwang, Yang, Fang (June 2020) 3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize. Genome Biology, 21 (1). p. 143. ISSN 1474-760X

Sun, Yu-Chi, Chen, Xiaoyin, Fischer, Stephan, Lu, Shaina, Gillis, Jesse, Zador, Anthony (August 2020) Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex. bioRxiv. (Unpublished)

Syrjanen, J. L., Michalski, K., Chou, T. H., Grant, T., Rao, S., Simorowski, N., Tucker, S. J., Grigorieff, N., Furukawa, H. (January 2020) Structure and assembly of calcium homeostasis modulator proteins. Nat Struct Mol Biol, 27 (2). pp. 150-159. ISSN 1545-9985 (Public Dataset)

Syrjanen, Johanna L, Michalski, Kevin, Chou, Tsung-Han, Grant, Timothy, Rao, Shanlin, Simorowski, Noriko, Tucker, Stephen J, Grigorieff, Nikolaus, Furukawa, Hiro (March 2020) Publisher Correction: Structure and assembly of calcium homeostasis modulator proteins. Nature Structural and Molecular Biology, 27 (3). p. 305. ISSN 1545-9993

Tareen, Ammar, Posfai, Anna, Ireland, William, McCandlish, David, Kinney, Justin (July 2020) MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect. BioRxiv. (Unpublished)

The International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolò, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Hausser, Michael, Hofer, Sonja, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Inês, Mainen, Zachary, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Sanders, Josh, Socha, Karolina, Terry, Rebecca, Urai, Anne, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana, Wool, Lauren, Zador, Anthony (January 2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv. (Unpublished)

Tian, C., Ohlund, D., Rickelt, S., Lidstrom, T., Huang, Y., Hao, L., Zhao, R. T., Franklin, O., Bhatia, S. N., Tuveson, D. A., Hynes, R. O. (February 2020) Cancer-cell-derived matrisome proteins promote metastasis in pancreatic ductal adenocarcinoma. Cancer Res, 80 (7). pp. 1461-1474. ISSN 0008-5472

Tomoi, Takumi, Kawade, Kensuke, Kitagawa, Munenori, Sakata, Yoichi, Tsukaya, Hirokazu, Fujita, Tomomichi (May 2020) Quantitative Imaging Reveals Distinct Contributions of SnRK2 and ABI3 in Plasmodesmatal Permeability in Physcomitrella patens. Plant and Cell Physiology, 61 (5). pp. 942-956. ISSN 0032-0781

Tsai, Hung-Ji, Nelliat, Anjali R, Kucharavy, Andrei, Choudhury, Mohammad Ikbal, Sun, Sean X, Schatz, Michael C, Li, Rong (July 2020) On the Transcriptomic Signature and General Stress State Associated with Aneuploidy. (Submitted)

Tuveson, D. A. (May 2020) Pancreatic cancer models and medicine. Molecular Cancer Research, 18 (5). p. 26. ISSN 1541-7786

Tuveson, David (September 2020) Overcoming the seven deadly hallmarks of pancreatic cancer. In: Special Conference on Pancreatic Cancer of American-Association-for-Cancer-Research (AACR).

Ueda, H.R., Dodt, H.-U., Osten, P., Economo, M.N., Chandrashekar, J., Keller, P.J. (May 2020) Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy. Neuron, 106 (3). pp. 369-387. ISSN 0896-6273

Vasquez, J.H., Borniger, J. C. (March 2020) Neuroendocrine and Behavioral Consequences of Hyperglycemia in Cancer. Endocrinology, 161 (5). ISSN 0013-7227

Vasudevan, A., Baruah, P.S., Smith, J.C., Wang, Z., Sayles, N. M., Andrews, P., Kendall, J., Leu, J., Chunduri, N.K., Levy, D., Wigler, M., Storchova, Z., Sheltzer, J. M. (February 2020) Single-Chromosomal Gains Can Function as Metastasis Suppressors and Promoters in Colon Cancer. Developmental Cell, 52 (4). pp. 413-428. ISSN 1534-5807

Vempati, P, Puckett, L, Evans, C, Dassler-Plenker, J, Curtis, J, Egeblad, M (November 2020) A Potential Synergistic Role of Radiation Therapy with Targeting of the CCL2-CCR2 Signaling Axis in a Murine Model of Breast Cancer. In: 62nd Annual Meeting of the American-Society-for-Radiation-Oncology (ASTRO).

Venkatasubramani, J.P., Subramanyam, P., Pal, R., Reddy, B.K., Srinivasan, D.J., Chattarji, S., Iossifov, I., Klann, E., Bhattacharya, S. (March 2020) N-terminal Variant Asp14Asn of the Human p70 S6 Kinase 1 Enhances Translational Signaling Causing Different Effects in Developing and Mature Neuronal Cells. Neurobiology of Learning and Memory, 171 (107203). ISSN 1074-7427

Vickman, Renee E, Faget, Douglas V, Beachy, Philip, Beebe, David, Bhowmick, Neil A, Cukierman, Edna, Deng, Wu-Min, Granneman, James G, Hildesheim, Jeffrey, Kalluri, Raghu, Lau, Ken S, Lengyel, Ernst, Lundeberg, Joakim, Moscat, Jorge, Nelson, Peter S, Pietras, Kristian, Politi, Katerina, Puré, Ellen, Scherz-Shouval, Ruth, Sherman, Mara H, Tuveson, David, Weeraratna, Ashani T, White, Richard M, Wong, Melissa H, Woodhouse, Elisa C, Zheng, Ying, Hayward, Simon W, Stewart, Sheila A (October 2020) Deconstructing tumor heterogeneity: the stromal perspective. Oncotarget, 11 (40). pp. 3621-3632. ISSN 1949-2553

Wang, B., Tseng, E., Baybayan, P., Eng, K., Regulski, M., Jiao, Y., Wang, L., Olson, A., Chougule, K., Buren, P. V., Ware, D. (February 2020) Variant phasing and haplotypic expression from long-read sequencing in maize. Commun Biol, 3 (1). p. 78. ISSN 2399-3642 (Public Dataset)

Wang, J. X., Irvine, M. W., Burnell, E. S., Sapkota, K., Thatcher, R. J., Li, M., Simorowski, N., Volianskis, A., Collingridge, G. L., Monaghan, D. T., Jane, D. E., Furukawa, H. (January 2020) Structural basis of subtype-selective competitive antagonism for GluN2C/2D-containing NMDA receptors. Nat Commun, 11 (1). p. 423. ISSN 2041-1723 (Public Dataset)

Wang, L., Lu, Z., Delabastide, M., Van Buren, P., Wang, X., Ghiban, C., Regulski, M., Drenkow, J., Xu, X., Ortiz-Ramirez, C., Marco, C.F., Goodwin, S., Dobin, A., Birnbaum, K. D., Jackson, D. P., Martienssen, R. A., McCombie, W. R., Micklos, D. A., Schatz, M. C., Ware, D. H., Gingeras, T. R. (March 2020) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. Frontiers in Plant Science, 11 (289). ISSN 1664-462X (Public Dataset)

Wang, L., Lu, Z., Regulski, M., Jiao, Y., Chen, J., Ware, D., Xin, Z. (August 2020) BSAseq: an interactive and integrated web-based workflow for identification of causal mutations in bulked F2 populations. Bioinformatics. ISSN 1367-4803

Wang, Pengfei, Liu, Lihong, Nair, Manoj S, Yin, Michael T, Luo, Yang, Wang, Qian, Yuan, Ting, Mori, Kanako, Solis, Axel Guzman, Yamashita, Masahiro, Garg, Ankur, Purpura, Lawrence J, Laracy, Justin C, Yu, Jian, Joshua-Tor, Leemor, Sodroski, Joseph, Huang, Yaoxing, Ho, David D (December 2020) SARS-CoV-2 neutralizing antibody responses are more robust in patients with severe disease. Emerging Microbes and Infections, 9 (1). pp. 2091-2093. ISSN 2222-1751

Wang, Zhenxing, Butel, Nicolas, Santos-González, Juan, Borges, Filipe, Yi, Jun, Martienssen, Robert A, Martinez, German, Köhler, Claudia (April 2020) Polymerase IV Plays a Crucial Role in Pollen Development in Capsella. The Plant Cell, 32 (4). pp. 950-966. ISSN 1040-4651

Wang, Zhikai, Yan, Ran, Li, Jiayun, Gao, Ya, Moresco, Philip, Yao, Min, Hechtman, Jaclyn F, Weiss, Matthew J, Janowitz, Tobias, Fearon, Douglas T (September 2020) Pancreatic cancer cells assemble a CXCL12-keratin 19 coating to resist immunotherapy. bioRxiv. (Unpublished)

Watson, Philip A, Lawrence, Kayla E, Nadkarni, Tejasveeta V, Ishmael, Taslima F, Lee, Eugine, Rivera, Aura C Agudelo, Love, Jillian R, Wongvipat, John, Cai, Ling, Nazir, Abbas, Iaquinta, Phillip J, Chang, Kenneth, Liang, Yupu, Hannon, Greg J, Sawyers, Charles L (August 2020) The protein phosphatase 4 complex is a tumor suppressor in prostate cancer. In: AACR Annual Meeting.

Wear, Emily E, Song, Jawon, Zynda, Gregory J, Mickelson-Young, Leigh, LeBlanc, Chantal, Lee, Tae-Jin, Deppong, David O, Allen, George C, Martienssen, Robert A, Vaughn, Matthew W, Hanley-Bowdoin, Linda, Thompson, William F (October 2020) Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLoS Genetics, 16 (10). e1008623. ISSN 1553-7404

Weber, A. G., Chau, A. S., Egeblad, M., Barnes, B. J., Janowitz, T. (September 2020) Nebulized in-line endotracheal dornase alfa and albuterol administered to mechanically ventilated COVID-19 patients: a case series. Mol Med, 26 (1). p. 91. ISSN 1076-1551 (Print)1076-1551

Weber, Andrew G, Chau, Alice S, Egeblad, Mikala, Barnes, Betsy J, Janowitz, Tobias (May 2020) Nebulized in-line endotracheal dornase alfa and albuterol administered to mechanically ventilated COVID-19 patients: A case series. MedRxiv. (Unpublished)

Wheeler, E., Brooks, A.M., Concia, L., Vera, D., Wear, E. E., LeBlanc, C., Ramu, U., Vaughn, M. W., Bass, H., Martienssen, R. A., Thompson, W.F., Hanley-Bowdoin, L. (March 2020) Arabidopsis DNA Replication Initiates in Intergenic, AT-rich Open Chromatin. Plant Physiology. ISSN 0032-0889 (Public Dataset)

Wilkinson, Michael J, Manoogian, Emily NC, Zadourian, Adena, Lo, Hannah, Fakhouri, Savannah, Shoghi, Azarin, Wang, Xinran, Fleischer, Jason G, Navlakha, Saket, Panda, Satchidananda, Taub, Pam R (January 2020) Ten-Hour Time-Restricted Eating Reduces Weight, Blood Pressure, and Atherogenic Lipids in Patients with Metabolic Syndrome. Cell Metabolism, 31 (1). 92-104.e5. ISSN 1550-4131

Williams, Alexia, Pena, Catherine, Laman-Maharg, Abigail, Sanchez, Evelyn Ordones, Xu, Christine, Ramos-Maciel, Stephanie, Hao, Rebecca, Yokoyama, Sae, Labonte, Benoit, Wu, Melody, Tollkuhn, Jessica, Zachariou, Venetia, Nestler, Eric, Trainor, Brian (December 2020) The Impact of Regulator of G-Protein Signaling 2 (RGS2) on Social Stress-Induced Behavioral Phenotypes. In: 59th Annual Meeting of the American-College-of-Neuropsychopharmacology (ACNP).

Wilson, J., Palmeri, J., Pappin, D. (August 2020) SimpliFi: a data-to-meaning analytics engine to bring omics understanding to all. J Biomol Tech, 31 (Suppl). S1. ISSN 1524-0215 (Print)1524-0215

Wilson, J.P., Ipsaro, J. J., Del Giudice, S.N., Turna, N. S., Gauss, C. M., Dusenbury, K.H., Marquart, K., Rivera, K. D., Pappin, D. J. (March 2020) Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides. J Proteome Res, 19 (4). pp. 1459-1469. ISSN 1535-3893 (Public Dataset)

Wong, J. C., Perez-Mancera, P. A., Kim, J., Jen, K. Y., Kogan, S. C., Firestone, A. J., Collisson, Eric A, Tuveson, D. A., Shannon, K. (May 2020) A second site Kras(G12D) mutation that impairs PI3K binding rescues embryonic lethality, abrogates myeloproliferative disease, and delays lung tumorigenesis. Molecular Cancer Research, 18 (5). p. 43. ISSN 1541-7786

Wong, Jasmine C, Perez-Mancera, Pedro A, Huang, Tannie Q, Kim, Jangkyung, Grego-Bessa, Joaquim, Del Pilar Alzamora, Maria, Kogan, Scott C, Sharir, Amnon, Keefe, Susan H, Morales, Carolina E, Schanze, Denny, Castel, Pau, Hirose, Kentaro, Huang, Guo N, Zenker, Martin, Sheppard, Dean, Klein, Ophir D, Tuveson, David A, Braun, Benjamin S, Shannon, Kevin (November 2020) KrasP34R and KrasT58I mutations induce distinct RASopathy phenotypes in mice. JCI Insight, 5 (21). ISSN 2379-3708

Wortman, JC, He, TF, Rosario, A, Wang, R, Schmolze, D, Yuan, Y, Susan, SE, Li, X, Levine, H, Atwal, G, Lee, P, Yu, CC (January 2020) Occupancy and fractal dimension analyses of the spatial distribution of cytotoxic (CD8+) T cells infiltrating the tumor microenvironment in triple negative breast cancer. In: Physics Of Cancer, The: Research Advances. WORLD SCIENTIFIC, pp. 63-78. ISBN 9789811223495

Wu, X.S., Vakoc, C. R. (May 2020) A Pliable ERα Cistrome Evades Therapy. Nat Cell Biol, 22 (6). pp. 619-620. ISSN 1465-7392

Xiao, X., Deng, H., Furlan, A., Yang, T., Zhang, X., Hwang, G. R., Tucciarone, J., Wu, P., He, M., Palaniswamy, R., Ramakrishnan, C., Ritola, K., Hantman, A., Deisseroth, K., Osten, P., Huang, Z. J., Li, B. (October 2020) A Genetically Defined Compartmentalized Striatal Direct Pathway for Negative Reinforcement. Cell, 183 (1). 211-227.e20. ISSN 0092-8674

Xu, M., Ergin, I., Beyaz, S. (April 2020) Advances in Diagnostic Procedures and Their Applications in the Era of Cancer Immunotherapy. In: Immunotherapy. Springer, pp. 37-50.

Xu, X., Crow, M., Rice, B. R., Li, F., Harris, B., Liu, L., Demesa-Arevalo, E., Lu, Z., Wang, L., Fox, N., Wang, X., Drenkow, J., Luo, A., Char, S. N., Yang, B., Sylvester, A. W., Gingeras, T. R., Schmitz, R. J., Ware, D., Lipka, A. E., Gillis, J., Jackson, D. (December 2020) Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Dev Cell, S1534- (20). pp. 31021-31022. ISSN 1534-5807

Xue, Alexander T, Hickerson, Michael J (May 2020) Comparative phylogeographic inference with genome-wide data from aggregated population pairs. Evolution, 74 (5). pp. 808-830. ISSN 0014-3820

Yamamoto, K., Venida, A., Yano, J., Biancur, D.E., Kakiuchi, M., Gupta, S., Sohn, A.S.W., Mukhopadhyay, S., Lin, E.Y., Parker, S.J., Banh, R.S., Paulo, J.A., Wen, K.W., Debnath, J., Kim, G.E., Mancias, J.D., Fearon, D. T., Perera, R.M., Kimmelman, A.C. (May 2020) Autophagy Promotes Immune Evasion of Pancreatic Cancer by Degrading MHC-I. Nature, 581 (7806). pp. 100-105. ISSN 0028-0836

Yan, Ran, Wang, Zhikai, Gao, Ya, Janowitz, Tobias, Fearon, Douglas T (May 2020) Immunogenicity and the CXCL12-coat control T cell accumulation in murine pancreatic cancer. In: UNSPECIFIED. (Unpublished)

Yoon, Paul Sukwoo, Del Piccolo, Nuala, Shirure, Venktesh S, Peng, Yushuan, Kirane, Amanda, Canter, Robert J, Fields, Ryan C, George, Steven C, Gholami, Sepideh (2020) Advances in Modeling the Immune Microenvironment of Colorectal Cancer. Frontiers in Immunology, 11. p. 614300. ISSN 1664-3224

Yu, C. C., Wortman, J. C., He, T. F., Solomon, S., Zhang, R. Z., Rosario, A., Wang, R., Tu, T., Schmolze, D., Yuan, Y., Yost, S. E., Li, X., Levine, H., Atwal, G., Lee, P. P. (November 2020) Physics Approaches to the Spatial Distribution of Immune Cells in Tumors. Rep Prog Phys. ISSN 0034-4885

Yuan, Zuanning, Schneider, Sarah, Dodd, Thomas, Riera, A., Bai, Lin, Yan, Chunli, Magdalou, Indiana, Ivanov, Ivaylo, Stillman, Bruce, Li, Huilin, Speck, C. (July 2020) Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6. Proceedings of the National Academy of Sciences of the United States of America, 117 (30). pp. 17747-17756. ISSN 0027-8424

Yuste, R., Hawrylycz, M., Aalling, N., Aguilar-Valles, A., Arendt, D., Arnedillo, R. A., Ascoli, G. A., Bielza, C., Bokharaie, V., Bergmann, T. B., Bystron, I., Capogna, M., Chang, Y., Clemens, A., de Kock, C. P. J., DeFelipe, J., Dos Santos, S. E., Dunville, K., Feldmeyer, D., Fiáth, R., Fishell, G. J., Foggetti, A., Gao, X., Ghaderi, P., Goriounova, N. A., Güntürkün, O., Hagihara, K., Hall, V. J., Helmstaedter, M., Herculano, S., Hilscher, M. M., Hirase, H., Hjerling-Leffler, J., Hodge, R., Huang, J., Huda, R., Khodosevich, K., Kiehn, O., Koch, H., Kuebler, E. S., Kühnemund, M., Larrañaga, P., Lelieveldt, B., Louth, E. L., Lui, J. H., Mansvelder, H. D., Marin, O., Martinez-Trujillo, J., Moradi Chameh, H., Nath, A., Nedergaard, M., Němec, P., Ofer, N., Pfisterer, U. G., Pontes, S., Redmond, W., Rossier, J., Sanes, J. R., Scheuermann, R., Serrano-Saiz, E., Steiger, J. F., Somogyi, P., Tamás, G., Tolias, A. S., Tosches, M. A., García, M. T., Vieira, H. M., Wozny, C., Wuttke, T. V., Yong, L., Yuan, J., Zeng, H., Lein, E. (August 2020) A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci, 23 (12). pp. 1456-1468. ISSN 1097-6256

Zebell, S. G. (October 2020) Excising the Mystery of Single-Guide RNA Processing. Plant Physiol, 184 (2). pp. 572-573. ISSN 0032-0889 (Print)0032-0889

Zeraati, Roxana, Engel, T. A., Levina, Anna (August 2020) Estimation of autocorrelation timescales with Approximate Bayesian Computations. bioRxiv. (Unpublished)

Zhang, Anqi (July 2020) Representations in Rodent Primary Visual Cortex During Visual Discrimination. PhD thesis, Cold Spring Harbor.

Zhao, Zhijian, Klindt, David A, Maia Chagas, André, Szatko, Klaudia P, Rogerson, Luke, Protti, Dario A, Behrens, Christian, Dalkara, Deniz, Schubert, Timm, Bethge, Matthias, Franke, Katrin, Berens, Philipp, Ecker, Alexander S, Euler, Thomas (March 2020) The temporal structure of the inner retina at a single glance. Scientific Reports, 10 (1). p. 4399. ISSN 2045-2322

Zhao, Qi, Molina-Portela, Maria Del Pilar, Parveen, Asma, Adler, Alexander, Adler, Christina, E, Hock, Wang, Wei, Ni, Min, Wei, Yi, Atwal, Gurinder, Mohrs, Markus, Thurston, Gavin, Eichten, Alexandra (November 2020) Heterogeneity and chimerism of endothelial cells revealed by single-cell transcriptome in orthotopic liver tumors. Angiogenesis, 23 (4). pp. 581-597. ISSN 0969-6970

Zhou, J., McCandlish, D. M. (April 2020) Minimum Epistasis Interpolation for Sequence-Function Relationships. Nature Communication, 11 (1782). pp. 1-11. ISSN 2041-1723 (Public Dataset)

Zhou, Juannan, Reynolds, Richard J, Zimmer, Elizabeth A, Dudash, Michele R, Fenster, Charles B (July 2020) Variable and sexually conflicting selection on Silene stellata floral traits by a putative moth pollinator selective agent. Evolution, 74 (7). pp. 1321-1334. ISSN 0014-3820

Zhou, Juannan, Wong, Mandy, Chen, Wei-Chia, Krainer, Adrian, Kinney, Justin, McCandlish, David (October 2020) Empirical variance component regression for sequence-function relationships. BioRxiv. (Unpublished)

Ziamtsov, I., Navlakha, S. (March 2020) Plant 3D (P3D): A Plant Phenotyping Toolkit for 3D Point Clouds. Bioinformatics. ISSN 1367-4803 (Public Dataset)

Zon, Leonard, Gomes, Ana P, Cance, William G, Ribas, Antoni, Tuveson, David, Postel-Vinay, Sophie, Massard, Christophe, Barlési, Fabrice (November 2020) Impact of COVID-19 Pandemic on Cancer Research. Cancer Cell, 38 (5). pp. 591-593. ISSN 1535-6108

Zou, C., Karn, A., Reisch, B., Nguyen, A., Sun, Y., Bao, Y., Campbell, M. S., Church, D., Williams, S., Xu, X., Ledbetter, C. A., Patel, S., Fennell, A., Glaubitz, J. C., Clark, M., Ware, D., Londo, J. P., Sun, Q., Cadle-Davidson, L. (January 2020) Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus. Nat Commun, 11 (1). p. 413. ISSN 2041-1723 (Public Dataset)

Zuo, Y., Yalavarthi, S., Shi, H., Gockman, K., Zuo, M., Madison, J.A., Blair, C.N., Weber, A., Barnes, B.J., Egeblad, M., Woods, R.J., Kanthi, Y., Knight, J.S. (June 2020) Neutrophil Extracellular Traps in COVID-19. JCI Insight, 5 (11). p. 138999. ISSN 2379-3708

de Bézieux, Hector Roux, Street, Kelly, Fischer, Stephan, Van den Berge, Koen, Chance, Rebecca, Risso, Davide, Gillis, Jesse, Ngai, John, Purdom, Elizabeth, Dudoit, Sandrine (March 2020) Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BioRxiv. (Unpublished)

de Gee, J.W., Tsetsos, K., Schwabe, L., Urai, A.E., McCormick, D., McGinley, M.J., Donner, T.H. (June 2020) Pupil-linked Phasic Arousal Predicts a Reduction of Choice Bias Across Species and Decision Domains. Elife, 9. e54014. ISSN 2050-084X

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

van Kempen, Jochem, Gieselmann, M. A., Boyd, M., Steinmetz, Nicholas A., Moore, Tirin, Engel, Tatiana A, Thiele, A. (March 2020) Top-down coordination of local cortical state during selective attention. biorxiv. (Unpublished)