Ribbon: Intuitive visualization for complex genomic variation

Nattestad, M., Aboukhalil, R., Chin, C. S., Schatz, M. C. (August 2020) Ribbon: Intuitive visualization for complex genomic variation. Bioinformatics. ISSN 1367-4803

DOI: 10.1093/bioinformatics/btaa680

Abstract

SUMMARY: Ribbon is an alignment visualization tool that shows how alignments are positioned within both the reference and read contexts, giving an intuitive view that enables a better understanding of structural variants and the read evidence supporting them. Ribbon was born out of a need to curate complex structural variant calls and determine whether each was well supported by long-read evidence, and it uses the same intuitive visualization method to shed light on contig alignments from genome-to-genome comparisons. AVAILABILITY AND IMPLEMENTATION: Ribbon is freely available online at http://genomeribbon.com/ and is open-source at https://github.com/marianattestad/ribbon. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Item Type: Paper
CSHL Authors:
Communities: CSHL labs > Schatz lab
Depositing User: Matthew Dunn
Date: 7 August 2020
Date Deposited: 30 Nov 2020 17:11
Last Modified: 30 Nov 2020 17:11
Related URLs:
URI: https://repository.cshl.edu/id/eprint/39765

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