Nattestad, M., Aboukhalil, R., Chin, C. S., Schatz, M. C. (August 2020) Ribbon: Intuitive visualization for complex genomic variation. Bioinformatics. ISSN 1367-4803
Abstract
SUMMARY: Ribbon is an alignment visualization tool that shows how alignments are positioned within both the reference and read contexts, giving an intuitive view that enables a better understanding of structural variants and the read evidence supporting them. Ribbon was born out of a need to curate complex structural variant calls and determine whether each was well supported by long-read evidence, and it uses the same intuitive visualization method to shed light on contig alignments from genome-to-genome comparisons. AVAILABILITY AND IMPLEMENTATION: Ribbon is freely available online at http://genomeribbon.com/ and is open-source at https://github.com/marianattestad/ribbon. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
| Item Type: | Paper |
|---|---|
| Subjects: | bioinformatics bioinformatics > genomics and proteomics > genetics & nucleic acid processing bioinformatics > genomics and proteomics bioinformatics > genomics and proteomics > genetics & nucleic acid processing > genomes |
| CSHL Authors: | |
| Communities: | CSHL labs > Schatz lab School of Biological Sciences > Publications |
| Depositing User: | Matthew Dunn |
| Date: | 7 August 2020 |
| Date Deposited: | 30 Nov 2020 17:11 |
| Last Modified: | 01 Feb 2024 16:31 |
| PMCID: | PMC8058763 |
| Related URLs: | |
| URI: | https://repository.cshl.edu/id/eprint/39765 |
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