Items where Subject is "neurons"

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Number of items at this level: 360.

A

Ahrens, S., Wu, M., Furlan, A., Hwang, G. R., Paik, R., Li, H., Penzo, M. A., Tollkuhn, J., Li, B. (May 2018) A central extended amygdala circuit that modulates anxiety. J Neurosci, 38 (24). pp. 5567-5583. ISSN 0270-6474

Aizenman, C. D., Akerman, C. J., Jensen, K. R., Cline, H. T. (August 2003) Visually driven regulation of intrinsic neuronal excitability improves stimulus detection in vivo. Neuron, 39 (5). pp. 831-842. ISSN 0896-6273

Aizenman, C. D., Cline, H. T. (April 2007) Enhanced visual activity in vivo forms nascent synapses in the developing retinotectal projection. J Neurophysiol, 97 (4). pp. 2949-57. ISSN 0022-3077 (Print)

Albeanu, Dinu F, Koh, Mathew, Anselmi, Francesca, Banerjee, Arkarup, Sadhu, Sai Teja, Villar, Pablo, Chae, Honggoo (2022) Axially independent optical control and readout of neuronal circuit activity in the olfactory bulb. In: UNSPECIFIED.

Albeanu, Dinu F, Soucy, Edward, Murthy, Venkatesh N (October 2008) Olfactory Sensory Axons Expressing Different Receptors Converge on Individual Glomeruli in Mice Lacking Olfactory Marker Protein. In: 15th International Symposium on Olfaction and Taste.

Anderson, Erik W, Jin, Ying, Shih, Andrew, Arazi, Arnon, Goodwin, Sara, Roeser, Julien, Furie, Richard A, Aranow, Cynthia, Volpe, Bruce, Diamond, Betty, Mackay, Meggan (November 2022) Associations between circulating interferon and kynurenine/tryptophan pathway metabolites: support for a novel potential mechanism for cognitive dysfunction in SLE. Lupus Science & Medicine, 9 (1). e000808. ISSN 2053-8790

Anderson, K., Koseki, H., Skarnes, W., Shen, M. (October 2010) MOUSE DEVELOPMENT,GENETICS & GENOMICS. In: 2010 meeting on MOUSE DEVELOPMENT,GENETICS & GENOMICS, October 26–October 30, 2010, Cold Spring Harbor Laboratory.

Ango, F., Wu, C., Van der Want, J. J., Wu, P., Schachner, M., Huang, Z. J. (April 2008) Bergmann Glia and the Recognition Molecule CHL1 Organize GABAergic Axons and Direct Innervation of Purkinje Cell Dendrites. PLoS Biology, 6 (4). e103.

Ango, F., di Cristo, G., Higashiyama, H., Bennett, V., Wu, P., Huang, Z. J. (October 2004) Ankyrin-based subcellular gradient of neurofascin, an immunoglobulin family protein, directs GABAergic innervation at purkinje axon initial segment. Cell, 119 (2). pp. 257-72. ISSN 0092-8674 (Print)

Anne, S. L., Govek, E. E., Ayrault, O., Kim, J. H., Zhu, X., Murphy, D. A., Van Aelst, L., Roussel, M. F., Hatten, M. E. (2013) WNT3 inhibits cerebellar granule neuron progenitor proliferation and medulloblastoma formation via MAPK activation. PLoS ONE, 8 (11). ISSN 19326203 (ISSN)

Asari, H. (2007) Auditory System Characterization. PhD thesis, Cold Spring Harbor Laboratory.

Asari, H., Pearlmutter, B. A., Zador, A. M. (July 2006) Sparse representations for the cocktail party problem. Journal of Neuroscience, 26 (28). pp. 7477-7490. ISSN 02706474

Asari, H., Zador, A. M. (August 2009) Long-Lasting Context Dependence Constrains Neural Encoding Models in Rodent Auditory Cortex. J Neurophysiol, 102 (5). pp. 2638-56.

Ascoli, GA, Huo, BX, Mitra, PP (January 2022) Sizing up whole-brain neuronal tracing. Science Bulletin. ISSN 2095-9273

Azmitia, E. C., Griffin, W. S. T., Marshak, D. R., Vaneldik, L. J., Whitakerazmitia, P. M. (1992) S100 Beta and Serotonin - a Possible Astrocytic-Neuronal Link to Neuropathology of Alzheimers-Disease. Progress in Brain Research, 94. pp. 459-473. ISSN 0079-6123

B

BRAIN Initiative Cell Census Network (BICCN) (October 2021) A multimodal cell census and atlas of the mammalian primary motor cortex. Nature, 598 (7879). pp. 86-102. ISSN 0028-0836

BRAIN Initiative Cell Census Network (BICCN), Adkins, Ricky, Aldridge, Andrew, Allen, Shona, Ament, Seth, An, Xu, Armand, Ethan, Ascoli, Giorgio, Bakken, Trygve, Bandrowski, Anita, Banerjee, Samik, Barkas, Nikolaos, Bartlett, Anna, Bateup, Helen, Behrens, Margarita, Berens, Philipp, Berg, Jim, Bernabucci, Matteo, Bernaerts, Yves, Bertagnolli, Darren, Biancalani, Tommaso, Boggeman, Lara, Booeshaghi, Sina, Bowman, Ian, Bravo, Héctor Corrada, Cadwell, Cathryn René, Callaway, Edward, Carlin, Benjamin, O'Connor, Carolyn, Carter, Robert, Casper, Tamara, Castanon, Rosa, Castro, Jesus Ramon, Chance, Rebecca, Chatterjee, Apaala, Chen, Huaming, Chun, Jerold, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, D'Orazi, Florence, Daigle, Tanya, Dalley, Rachel, Dee, Nick, Degatano, Kylee, Dichter, Benjamin, Diep, Dinh, Ding, Liya, Ding, Song-Lin, Dominguez, Bertha, Dong, Hong-Wei, Dong, Weixiu, Dougherty, Elizabeth, Dudoit, Sandrine, Ecker, Joseph, Eichhorn, Stephen, Fang, Rongxin, Felix, Victor, Feng, Guoping, Feng, Zhao, Fischer, Stephan, Fitzpatrick, Conor, Fong, Olivia, Foster, Nicholas, Galbavy, William, Gee, James, Ghosh, Satrajit, Giglio, Michelle, Gillespie, Thomas, Gillis, Jesse, Goldman, Melissa, Goldy, Jeff, Gong, Hui, Gou, Lin, Grauer, Michael, Halchenko, Yaroslav, Harris, Julie, Hartmanis, Leonard, Hatfield, Joshua, Hawrylycz, Mike, Helba, Brian, Herb, Brian, Hertzano, Ronna, Hintiryan, Houri, Hirokawa, Karla, Hockemeyer, Dirk, Hodge, Rebecca, Hood, Greg, Horwitz, Gregory, Hou, Xiaomeng, Hu, Lijuan, Hu, Qiwen, Huang, Josh, Huo, Bingxing, Ito-Cole, Tony, Jacobs, Matthew, Jia, Xueyan, Jiang, Shengdian, Jiang, Tao, Jiang, Xiaolong, Jin, Xin, Jorstad, Nikolas, Kalmbach, Brian, Kancherla, Jayaram, Keene, Dirk, Kelly, Kathleen, Khajouei, Farzaneh, Kharchenko, Peter, Kim, Gukhan, Ko, Andrew, Kobak, Dmitry, Konwar, Kishori, Kramer, Daniel, Krienen, Fenna, Kroll, Matthew, Kuang, Xiuli, Kuo, Hsien-Chi, Lake, Blue, Larsen, Rachael, Lathia, Kanan, Laturnus, Sophie, Lee, Angus, Lee, Cheng-Ta, Lee, Kuo-Fen, Lein, Ed, Lesnar, Phil, Li, Anan, Li, Xiangning, Li, Xu, Li, Yang Eric, Li, Yaoyao, Li, Yuanyuan, Lim, Byungkook, Linnarsson, Sten, Liu, Christine, Liu, Hanqing, Liu, Lijuan, Lucero, Jacinta, Luo, Chongyuan, Luo, Qingming, Macosko, Evan, Mahurkar, Anup, Martone, Maryann, Matho, Katherine, McCarroll, Steven, McCracken, Carrie, McMillen, Delissa, Miranda, Elanine, Mitra, Partha, Miyazaki, Paula Assakura, Mizrachi, Judith, Mok, Stephanie, Mukamel, Eran, Mulherkar, Shalaka, Nadaf, Naeem, Naeemi, Maitham, Narasimhan, Arun, Nery, Joseph, Ng, Lydia, Ngai, John, Nguyen, Thuc Nghi, Nickel, Lance, Nicovich, Philip, Niu, Sheng-Yong, Ntranos, Vasilis, Nunn, Michael, Olley, Dustin, Orvis, Joshua, Osteen, Julia, Osten, Pavel, Owen, Scott, Pachter, Lior, Palaniswamy, Ramesh, Palmer, Carter, Pang, Yan, Peng, Hanchuan, Pham, Thanh, Pinto-Duarte, Antonio, Plongthongkum, Nongluk, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Qu, Lei, Rashid, Mohammad, Reed, Nora, Regev, Aviv, Ren, Bing, Ren, Miao, Rimorin, Christine, Risso, Davide, Rivkin, Angeline, Muñoz-Castañeda, Rodrigo, Romanow, William, Ropelewski, Alexander, Roux de Bézieux, Hector, Ruan, Zongcai, Sandberg, Rickard, Savoia, Steven, Scala, Federico, Schor, Michael, Shen, Elise, Siletti, Kimberly, Smith, Jared, Smith, Kimberly, Somasundaram, Saroja, Song, Yuanyuan, Sorensen, Staci, Stafford, David, Street, Kelly, Sulc, Josef, Sunkin, Susan, Svensson, Valentine, Tan, Pengcheng, Tan, Zheng Huan, Tasic, Bosiljka, Thompson, Carol, Tian, Wei, Tickle, Timothy, Tieu, Michael, Ting, Jonathan, Tolias, Andreas Savas, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Van den Berge, Koen, van Velthoven, Cindy TJ, Vanderburg, Charles, Veldman, Matthew, Vu, Minh, Wakeman, Wayne, Wang, Peng, Wang, Quanxin, Wang, Xinxin, Wang, Yimin, Wang, Yun, Welch, Joshua, White, Owen, Williams, Elora, Xie, Fangming, Xie, Peng, Xiong, Feng, Yang, William, Yanny, Anna Marie, Yao, Zizhen, Yin, Lulu, Yu, Yang, Yuan, Jing, Z, Hongkui (October 2020) A multimodal cell census and atlas of the mammalian primary motor cortex. BioRxiv. (Unpublished)

Bakken, Trygve E, Jorstad, Nikolas L, Hu, Qiwen, Lake, Blue B, Tian, Wei, Kalmbach, Brian E, Crow, Megan, Hodge, Rebecca D, Krienen, Fenna M, Sorensen, Staci A, Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D, Aldridge, Andrew I, Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Castanon, Rosa G, Crichton, Kirsten, Daigle, Tanya L, Dalley, Rachel, Dee, Nick, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T, Herb, Brian R, Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, van Lew, Baldur, Li, Yang Eric, Liu, Christine S, Liu, Hanqing, Lucero, Jacinta D, Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A, Moussa, Marmar, Nery, Joseph R, Nicovich, Philip R, Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K, Owen, Scott, Palmer, Carter R, Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M, Rimorin, Christine, Rivkin, Angeline, Romanow, William J, Sedeño-Cortés, Adriana E, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A, Behrens, M Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R, Höllt, Thomas, Horwitz, Gregory D, Keene, C Dirk, Kharchenko, Peter V, Ko, Andrew L, Lelieveldt, Boudewijn P, Luo, Chongyuan, Mukamel, Eran A, Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H, Smith, Kimberly, Spain, William J, White, Owen R, Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z, McCarroll, Steven A, Ting, Jonathan T, Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R, Linnarsson, Sten, Lein, Ed S (October 2021) Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature, 598 (7879). pp. 111-119. ISSN 0028-0836

Banerjee, A., Marbach, F., Anselmi, F., Koh, M. S., Davis, M. B., Garcia da Silva, P., Delevich, K., Oyibo, H. K., Gupta, P., Li, B., Albeanu, D. F. (July 2015) An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb. Neuron, 87 (1). pp. 193-207. ISSN 0896-6273

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474

Beukema, P., Cecil, K. L., Peterson, E., Mann, V. R., Matsushita, M., Takashima, Y., Navlakha, S., Barth, A. L. (June 2018) TrpM8-mediated somatosensation in mouse neocortex. J Comp Neurol, 526 (9). pp. 1444-1456. ISSN 0021-9967

Birbrair, A., Wang, Z. M., Messi, M. L., Enikolopov, G. N. , Delbono, O. (February 2011) Nestin-GFP transgene reveals neural precursor cells in adult skeletal muscle. PLoS ONE, 6 (2). ISSN 19326203 (ISSN)

Birbrair, A., Zhang, T., Wang, Z., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (September 2012) Skeletal Muscle Neural Progenitor Cells Exhibit Properties of NG2-Glia. Experimental Cell Research. ISSN 0014-4827

Blair, H. T., Tinkelman, A., Moita, M. A. P., LeDoux, J. E. (2003) Associative plasticity in neurons of the lateral amygdala during auditory fear conditioning. In: Amygdala in Brain Function: Bacic and Clinical Approaches. Annals of the New York Academy of Sciences, 985 . New York Academy of Sciences, New York, pp. 485-487. ISBN 0077-8923

Blot, Antonin, Roth, Morgane M, Gasler, Ioana, Javadzadeh, Mitra, Imhof, Fabia, Hofer, Sonja B (June 2021) Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Neuron, 109 (12). 1996-2008.e6. ISSN 0896-6273

Bohland, J. W., Bullock, D., Guenther, F. H. (April 2010) Neural representations and mechanisms for the performance of simple speech sequences. Journal of Cognitive Neuroscience, 22 (7). pp. 1504-1529.

Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., Haber, S. N., Hawrylycz, M., Herrera, D. G., Hilgetag, C. C., Huang, Z. J., Jones, A., Jones, E. G., Karten, H. J., Kleinfeld, D., Kotter, R., Lester, H. A., Lin, J. M., Mensh, B. D., Mikula, S., Panksepp, J., Price, J. L., Safdieh, J., Saper, C. B., Schiff, N. D., Schmahmann, J. D., Stillman, B. W., Svoboda, K., Swanson, L. W., Toga, A. W., Van Essen, D. C., Watson, J. D., Mitra, P. P. (March 2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology, 5 (3). e1000334. ISSN 1553734X

Bokil, H. S., Andrews, P., Kulkarni, J. E., Mehta, S., Mitra, P. P. (September 2010) Chronux: A platform for analyzing neural signals. Journal of Neuroscience Methods, 10 (Supp 1). pp. 146-151.

Bokil, H. S., Pesaran, B., Andersen, R. A., Mitra, P. P. (August 2006) A method for detection and classification of events in neural activity. IEEE Trans Biomed Eng, 53 (8). pp. 1678-87. ISSN 0018-9294 (Print)

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Brecht, M., Fee, M. S., Garaschuk, O., Helmchen, F., Margrie, T. W., Svoboda, K., Osten, P. (October 2004) Novel approaches to monitor and manipulate single neurons in vivo. Journal of Neuroscience, 24 (42). pp. 9223-9227. ISSN 0270-6474

Brennand, K. J., Simone, A., Jou, J., Gelboin-Burkhart, C., Tran, N., Sangar, S., Li, Y., Mu, Y., Chen, G., Yu, D., McCarthy, S. E., Sebat, J., Gage, F. H. (May 2011) Modelling schizophrenia using human induced pluripotent stem cells. Nature, 473 (7346). 221 - 225. ISSN 00280836 (ISSN)

Brody, C. D., Romo, R., Kepecs, A. (2003) Basic mechanisms for graded persistent activity: Discrete attractors, continuous attractors, and dynamic representations. Current Opinion in Neurobiology, 13 (2). pp. 204-211. ISSN 09594388 (ISSN)

Broser, P., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (July 2008) Critical period plasticity of axonal arbors of layer 2/3 pyramidal neurons in rat somatosensory cortex: layer-specific reduction of projections into deprived cortical columns. Cerebral Cortex, 18 (7). pp. 1588-603. ISSN 1047-3211

Broser, P. J., Erdogan, S., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (March 2008) Automated axon length quantification for populations of labelled neurons. Journal of Neuroscience Methods, 169 (1). pp. 43-54. ISSN 0165-0270

Buchanan, JoAnn, da Costa, Nuno Maçarico, Cheadle, Lucas (August 2023) Emerging roles of oligodendrocyte precursor cells in neural circuit development and remodeling. Trends in Neurosciences, 46 (8). pp. 628-639. ISSN 0166-2236

C

Cantallops, I., Cline, H. T. (May 2008) Rapid activity-dependent delivery of the neurotrophic protein CPG15 to the axon surface of neurons in intact Xenopus tadpoles. Dev Neurobiol, 68 (6). pp. 744-759.

Chalk, M., Masset, P., Gutkin, B., Deneve, S. (June 2017) Sensory noise predicts divisive reshaping of receptive fields. PLoS Comput Biol, 13 (6). e1005582. ISSN 1553-734x

Cheadle, Lucas (May 2023) Neuron-glia communication through bona fide synapses. Nature Reviews Neuroscience. ISSN 1471-003X

Chen, Xiaoyin, Fischer, Stephan, Zhang, Aixin, Gillis, Jesse, Zador, Anthony (2022) Modular cell type organization of cortical areas revealed by in situ sequencing. bioRxiv. (Submitted)

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin, Kebschull, Justus, Zador, Anthony, Koulakov, Alexei, Albeanu, Dinu (2021) Wiring logic of the early rodent olfactory system revealed by high-throughput sequencing of single neuron projections. bioRxiv. (Submitted)

Chen, B. E., Lendvai, B., Nimchinsky, E. A., Burbach, B., Fox, K., Svoboda, K. (November 2000) Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo. Learning & Memory, 7 (6). pp. 433-441. ISSN 1072-0502

Chen, B. L., Chklovskii, D. B. (April 2006) Placement and routing optimization in the brain. Proceedings of the 2006 international symposium on Physical design, 2006. pp. 136-141.

Chen, B. L., Hall, D. H., Chklovskii, D. B. (March 2006) Wiring optimization can relate neuronal structure and function. Proc Natl Acad Sci U S A, 103 (12). pp. 4723-8. ISSN 0027-8424 (Print)

Chen, G., Li, W., Zhang, Q. S. , Regulski, M. R., Sinha, N., Barditch, J., Tully, T. , Krainer, A. R., Zhang, M. Q., Dubnau, J. T. (February 2008) Identification of Synaptic Targets of Drosophila Pumilio. PLoS Computational Biology, 4 (2). e1000026. ISSN 1553734X

Chen, X., Sun, Y. C., Church, G. M., Lee, J. H., Zador, A. M. (February 2018) Efficient in situ barcode sequencing using padlock probe-based BaristaSeq. Nucleic Acids Res, 46 (4). e22. ISSN 0305-1048

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (October 2022) High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Cell, 185 (22). 4117-4134.e28. ISSN 0092-8674

Chevy, Q., Kepecs, A. (February 2018) When Acetylcholine Unlocks Feedback Inhibition in Cortex. Neuron, 97 (3). pp. 481-484. ISSN 0896-6273

Chiu, S. L. (July 2008) The role of insulin receptor in the development of neuronal structure and function. PhD thesis, Cold Spring Harbor Laboratory.

Chklovskii, D. B. (September 2004) Synaptic connectivity and neuronal morphology: two sides of the same coin. Neuron, 43 (5). pp. 609-17. ISSN 0896-6273 (Print)

Christodoulou, F., Raible, F., Tomer, R., Simakov, O., Trachana, K., Klaus, S., Snyman, H., Hannon, G. J., Bork, P., Arendt, D. (February 2010) Ancient animal microRNAs and the evolution of tissue identity. Nature, 463 (7284). pp. 1084-1088. ISSN 0028-0836

Churchland, A. K., Kiani, R., Chaudhuri, R., Wang, X. J., Pouget, A., Shadlen, M. N. (February 2011) Variance as a Signature of Neural Computations during Decision Making. Neuron, 69 (4). pp. 818-831.

Churchland, A. K., Musall, Simon, Kaufman, Matthew T., Juavinett, A. L., Gluf, S. (October 2019) Dataset from: Single-trial neural dynamics are dominated by richly varied movements. [Dataset]

Cline, H. T., Haas, K. (March 2008) The regulation of dendritic arbor development and plasticity by glutamatergic synaptic input: a review of the synaptotrophic hypothesis. J Physiol, 586 (6). pp. 1509-1517.

Cline, H. T., Wu, G.-Y., Malinow, R. (1996) In vivo development of neuronal structure and function. Cold Spring Harbor Symposia on Quantitative Biology, 61. pp. 95-104. ISSN 00917451 (ISSN)

Corona, Alberto, Choe, Jane, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Shea, Stephen D (July 2023) A circuit from the locus coeruleus to the anterior cingulate cortex modulates offspring interactions in mice. Cell Reports, 42 (7). p. 112771. ISSN 2211-1247

Cox, C. L., Denk, W., Tank, D. W., Svoboda, K. (August 2000) Action potentials reliably invade axonal arbors of rat neocortical neurons. Proceedings of the National Academy of Sciences of the United States of America, 97 (17). pp. 9724-9728. ISSN 0027-8424

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., Gillis, J. (February 2018) Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor. Nat Commun, 9 (1). p. 884. ISSN 2041-1723

Czeisler, C. M., Silva, T. M., Fair, S. R., Liu, J., Tupal, S., Kaya, B., Cowgill, A., Mahajan, S., Silva, P. E., Wang, Y., Blissett, A. R., Goksel, M., Borniger, J. C., Zhang, N., Fernandes-Junior, S. A., Catacutan, F., Alves, M. J., Nelson, R. J., Sundaresean, V., Rekling, J., Takakura, A. C., Moreira, T. S., Otero, J. J. (April 2019) The role of PHOX2B-derived astrocytes in chemosensory control of breathing and sleep homeostasis. J Physiol, 597 (8). pp. 2225-2251. ISSN 1469-7793

D

Davis, G., Kolodkin, A., Mason, C. (September 2010) AXON GUIDANCE, SYNAPTIC PLASTICITY & REGENERATION. In: 2010 Meeting of AXON GUIDANCE, SYNAPTIC PLASTICITY & REGENERATION, September 21–September 25, 2010, Cold Spring Harbor Laboratory.

De Pietri Tonelli, D., Pulvers, J. N., Haffner, C., Murchison, E. P., Hannon, G. J., Huttner, W. B. (2008) miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex. Development, 135 (23). pp. 3911-3921. ISSN 09501991 (ISSN)

DeWeese, M., Zador, A. M. (1998) Asymmetric Dynamics in Optimal Variance Adaptation. Neural Computation, 10 (5). pp. 1179-1202. ISSN 08997667 (ISSN)

DeWeese, M. R., Hromádka, T., Zador, A. M. (November 2005) Reliability and representational bandwidth in the auditory cortex. Neuron, 48 (3). pp. 479-88. ISSN 0896-6273 (Print)

DeWeese, M. R., Wehr, M., Zador, A. M. (August 2003) Binary spiking in auditory cortex. Journal of Neuroscience, 23 (21). pp. 7940-7949. ISSN 0270-6474

DeWeese, M. R., Zador, A. M. (November 2006) Non-Gaussian membrane potential dynamics imply sparse, synchronous activity in auditory cortex. J Neurosci, 26 (47). pp. 12206-18. ISSN 1529-2401 (Electronic)

Devor, Anna, Bandettini, Peter A, Boas, David A, Bower, James M, Buxton, Richard B, Cohen, Lawrence B, Dale, Anders M, Einevoll, Gaute T, Fox, Peter T, Franceschini, Maria Angela, Friston, Karl J, Fujimoto, James G, Geyer, Mark A, Greenberg, Joel H, Halgren, Eric, Hämäläinen, Matti S, Helmchen, Fritjof, Hyman, Bradley T, Jasanoff, Alan, Jernigan, Terry L, Judd, Lewis L, Kim, Seong-Gi, Kleinfeld, David, Kopell, Nancy J, Kutas, Marta, Kwong, Kenneth K, Larkum, Matthew E, Lo, Eng H, Magistretti, Pierre J, Mandeville, Joseph B, Masliah, Eliezer, Mitra, Partha P, Mobley, William C, Moskowitz, Michael A, Nimmerjahn, Axel, Reynolds, John H, Rosen, Bruce R, Salzberg, Brian M, Schaffer, Chris B, Silva, Gabriel A, So, Peter T C., Spitzer, Nicholas C, Tootell, Roger B, Van Essen, David C, Vanduffel, Wim, Vinogradov, Sergei A, Wald, Lawrence L, Wang, Lihong V, Weber, Bruno, Yodh, Arjun G (October 2013) The Challenge of Connecting the Dots in the B.R.A.I.N. Neuron, 80 (2). pp. 270-274. ISSN 0896-6273

Dhawale, A. K., Hagiwara, A., Bhalla, U. S., Murthy, V. N., Albeanu, D. F. (October 2010) Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nature Neuroscience, 13. pp. 1404-12. ISSN 1097-6256

Diaz-Nido, J., Mizuno, K., Nawa, H., Marshak, D. R. (1994) Regulation of protein kinase CK2 isoform expression during rat brain development. Cell Mol Biol Res, 40 (5-6). pp. 581-5. ISSN 0968-8773 (Print)

Dudok, Barna, Szoboszlay, Miklos, Paul, Anirban, Klein, Peter M, Liao, Zhenrui, Hwaun, Ernie, Szabo, Gergely G, Geiller, Tristan, Vancura, Bert, Wang, Bor-Shuen, McKenzie, Sam, Homidan, Jesslyn, Klaver, Lianne MF, English, Daniel F, Huang, Z Josh, Buzsáki, György, Losonczy, Attila, Soltesz, Ivan (October 2021) Recruitment and inhibitory action of hippocampal axo-axonic cells during behavior. Neuron. ISSN 0896-6273

Dumitriu, D., Cossart, R., Huang, Z. J., Yuste, R. (January 2007) Correlation between axonal morphologies and synaptic input kinetics of interneurons from mouse visual cortex. Cerebral Cortex, 17 (1). pp. 81-91. ISSN 1047-3211

Dvorkin, Roman, Shea, Stephen D (February 2022) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior in mice. The Journal of Neuroscience. ISSN 0270-6474

de Sevilla, D. F., Núñez, A., Borde, M., Malinow, R., Buño, W. (2008) Cholinergic-mediated IP3-ereceptor activation induces long-lasting synaptic enhancement in CA1 pyramidal neurons. Journal of Neuroscience, 28 (6). pp. 1469-1478. ISSN 0270-6474

deCharms, R. C., Zador, A. M. (2000) Neural representation and the cortical code. Annual Review of Neuroscience, 23. 613-+. ISSN 0147-006X

E

Eckmeier, D., Shea, S. D. (November 2014) Noradrenergic plasticity of olfactory sensory neuron inputs to the main olfactory bulb. Journal of Neuroscience, 34 (46). pp. 15234-43. ISSN 0270-6474

Efrat, S., Teitelman, G., Anwar, M., Ruggiero, D., Hanahan, D. (September 1988) Glucagon gene regulatory region directs oncoprotein expression to neurons and pancreatic alpha cells. Neuron, 1 (7). pp. 605-13. ISSN 0896-6273

Encinas, J. M., Enikolopov, G. (2008) Identifying and quantitating neural stem and progenitor cells in the adult brain. Methods Cell Biol, 85. pp. 243-72. ISSN 0091-679X (Print) (Unpublished)

Encinas, J. M., Vaahtokari, A., Enikolopov, G. N. (May 2006) Fluoxetine targets early progenitor cells in the adult brain. Proc Natl Acad Sci U S A, 103 (21). pp. 8233-8. ISSN 0027-8424 (Print)

Encinas, Juan M., Vazquez, Marcelo E., Switzer, Robert C., Chamberland, Dennis W., Nick, Harry, Levine, Howard G., Scarpa, Philip J., Enikolopov, Grigori, Steindler, Dennis A. (2008) Quiescent adult neural stem cells are exceptionally sensitive to cosmic radiation. Experimental Neurology, 210 (1). 274-279 . ISSN 1090-2430 (Electronic) 1090-2430 (Linking)

Engel, Tatiana (May 2022) Volatile neurons unite to stabilize visual experience. Nature, 605 (7911). pp. 625-626. ISSN 0028-0836

Engel, T. A., Chaisangmongkon, W., Freedman, D. J., Wang, X. J. (March 2015) Choice-correlated activity fluctuations underlie learning of neuronal category representation. Nat Commun, 6. p. 6454. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Engel, T. A., Helbig, B., Russell, D. F., Schimansky-Geier, L., Neiman, A. B. (August 2009) Coherent stochastic oscillations enhance signal detection in spiking neurons. Phys Rev E Stat Nonlin Soft Matter Phys, 80 (2 Pt 1). 021919. ISSN 1539-3755 (Print)1539-3755 (Linking)

Engel, T. A., Schimansky-Geier, L., Herz, A. V., Schreiber, S., Erchova, I. (September 2008) Subthreshold membrane-potential resonances shape spike-train patterns in the entorhinal cortex. J Neurophysiol, 100 (3). pp. 1576-89. ISSN 0022-3077 (Print)0022-3077 (Linking)

Engel, T. A., Steinmetz, N. A. (October 2019) New perspectives on dimensionality and variability from large-scale cortical dynamics. Curr Opin Neurobiol, 58. pp. 181-190. ISSN 0959-4388

Engel, T. A., Wang, X. J. (May 2011) Same or different? A neural circuit mechanism of similarity-based pattern match decision making. J Neurosci, 31 (19). pp. 6982-96. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Engel, Tatiana (2007) Firing statistics in neurons as non-Markovian first passage time problem. PhD thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I.

Enikolopov, G., Peunova, N. (March 1993) Nitric-oxide potentiates the effect of calcium on transcription in neuronal cells. Journal of Cellular Biochemistry, 53 (Suppl ). p. 254. ISSN 0730-2312

Enikolopov, G. N. (November 2011) Talk from Grigori Enikolopov at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

F

Fenno, L. E., Mattis, J., Ramakrishnan, C., Hyun, M., Lee, S. Y., He, M., Tucciarone, J., Selimbeyoglu, A., Berndt, A., Grosenick, L., Zalocusky, K. A., Bernstein, H., Swanson, H., Perry, C., Diester, I., Boyce, F. M., Bass, C. E., Neve, R., Huang, Z. J., Deisseroth, K. (June 2014) Targeting cells with single vectors using multiple-feature Boolean logic. Nature Methods, 11 (7). pp. 763-772. ISSN 15487091 (ISSN)

Ferro, Austin, Cheadle, Lucas (August 2022) When the levee of sympathetic outflow breaks. Immunity, 55 (8). pp. 1334-1336. ISSN 1074-7613

Fiedler, T. J., Hudder, A., McKay, S. J., Shivkumar, S., Capo, T. R., Schmale, M. C., Walsh, P. J. (June 2010) The transcriptome of the early life history stages of the California Sea Hare Aplysia californica. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 5 (2). pp. 165-170.

Fischer, Stephan, Gillis, Jesse (November 2021) How many markers are needed to robustly determine a cell's type? iScience, 24 (11). p. 103292. ISSN 2589-0042

Fischer, Stephan, Gillis, Jesse (June 2021) How many markers are needed to robustly determine a cell’s type? BioRxiv. (Unpublished)

Fishell, G., Kepecs, A. (July 2019) Interneuron Types as Attractors and Controllers. Annu Rev Neurosci. ISSN 0147-006x

G

Gegenhuber, B., Tollkuhn, J. (June 2019) Sex Differences in the Epigenome: A Cause or Consequence of Sexual Differentiation of the Brain? Genes (Basel), 10 (6). E432. ISSN 2073-4425 (Print)2073-4425

Genkin, Mikhail, Shenoy, Krishna V, Chandrasekaran, Chandramouli, Engel, Tatiana A (July 2023) The dynamics and geometry of choice in premotor cortex. (Submitted)

Gentet, L. J., Kremer, Y., Taniguchi, H., Huang, Z. J., Staiger, J. F., Petersen, C. C. H. (February 2012) Unique functional properties of somatostatin-expressing GABAergic neurons in mouse barrel cortex. Nature Neuroscience, 15 (4). pp. 607-12. ISSN 10976256 (ISSN)

Ghosh, Sanchari, Zador, Anthony M (March 2021) Corticostriatal Plasticity Established by Initial Learning Persists after Behavioral Reversal. eNeuro, 8 (2). pp. 1-10. ISSN 2373-2822

Goodwin, Daniel R, Vaughan, Alex, Leible, Daniel, Alon, Shahar, Henry, Gilbert L, Cheng, Anne, Chen, Xiaoyin, Zhang, Ruihan, Xue, Andrew G, Wassie, Asmamaw T, Sinha, Anubhav, Bando, Yosuke, Kajita, Atsushi, Marblestone, Adam H, Zador, Anthony M, Boyden, Edward S, Church, George M, Kohman, Richie E (July 2022) Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics. bioRxiv. (Submitted)

Govek, E. E., Newey, S. E., Van Aelst, L. (January 2005) The role of the Rho GTPases in neuronal development. Genes Dev, 19 (1). pp. 1-49. ISSN 0890-9369 (Print)

Govek, Eve-Ellen, Wu, Zhuhao, Acehan, Devrim, Molina, Henrik, Rivera, Keith, Zhu, Xiaodong, Fang, Yin, Tessier-Lavigne, Marc, Hatten, Mary Elizabeth (March 2018) Cdc42 Regulates Neuronal Polarity during Cerebellar Axon Formation and Glial-Guided Migration. iScience, 1. pp. 35-48. ISSN 2589-0042

Gruntman, E., Turner, G. C. (October 2013) Integration of the olfactory code across dendritic claws of single mushroom body neurons. Nature Neuroscience, 16 (12). pp. 1821-1829. ISSN 10976256

H

Haery, L., Deverman, B. E., Matho, K. S., Cetin, A., Woodard, K., Cepko, C., Guerin, K. I., Rego, M. A., Ersing, I., Bachle, S. M., Kamens, J., Fan, M. (November 2019) Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation. Front Neuroanat, 13. p. 93. ISSN 1662-5129 (Print)1662-5129

Han, Y., Kebschull, J. M., Campbell, R. A. A., Cowan, D., Imhof, F., Zador, A. M., Mrsic-Flogel, T. D. (April 2018) The logic of single-cell projections from visual cortex. Nature, 556 (7699). pp. 51-56. ISSN 0028-0836

Hangya, Balázs, Ranade, Sachin P, Lorenc, Maja, Kepecs, Adam (August 2015) Central Cholinergic Neurons Are Rapidly Recruited by Reinforcement Feedback. Cell, 162 (5). pp. 1155-1168. ISSN 0092-8674

Hannan, F., Zhong, Y. (1999) Second messenger systems underlying plasticity at the neuromuscular junction. Int Rev Neurobiol, 43. pp. 119-38. ISSN 0074-7742 (Print)

Harris, Benjamin D (October 2021) Atlas level scRNAseq analysis reveals the functional landscape of cell types. PhD thesis, Cold Spring Harbor Laboratory.

Harvey, C. D., Yasuda, R., Zhong, H., Svoboda, K. (July 2008) The spread of ras activity triggered by activation of a single dendritic spine. Science, 321 (5885). pp. 136-40.

He, M., Tucciarone, J., Lee, S., Nigro, M. J., Kim, Y., Levine, J. M., Kelly, S. M., Krugikov, I., Wu, P., Chen, Y., Gong, L., Hou, Y., Osten, P., Rudy, B., Huang, Z. J. (September 2016) Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex. Neuron, 91 (6). pp. 1228-1243. ISSN 1097-4199 (Electronic)0896-6273 (Linking)

Henn, F. A. (January 2012) Circuits, Cells, and Synapses: Toward a New Target for Deep Brain Stimulation in Depression. Neuropsychopharmacology, 37 (1). pp. 307-308. ISSN 0893-133X

Henn, F. A., Hansson, H. A., Hamberger, A. (June 1972) Preparation of plasma membrane from isolated neurons. Journal of Cell Biology, 53 (3). pp. 654-61. ISSN 0021-9525

Herz, A. V. M., Gollisch, T., Machens, C. K., Jaeger, D. (2006) Modeling single-neuron dynamics and computations: A balance of detail and abstraction. Science, 314 (5796). pp. 80-85. ISSN 00368075

Hinds, H. L., Tonegawa, S., Malinow, R. (September 1998) CA1 long-term potentiation is diminished but present in hippocampal slices from alpha-CaMKII mutant mice. Learning and Memory, 5 (4-5). pp. 344-54. ISSN 1072-0502 (Print)

Hirokawa, J., Vaughan, A., Masset, P., Ott, T., Kepecs, A. (December 2019) Frontal cortex neuron types categorically encode single decision variables. Nature, 576 (7787). pp. 446-451. ISSN 0028-0836 (Public Dataset)

Hodge, R. D., Kowalczyk, T. D., Wolf, S. A., Encinas, J. M., Rippey, C. F., Enikolopov, G. N., Kempermann, G., Hevner, R. F. (April 2008) Intermediate Progenitors in Adult Hippocampal Neurogenesis: Tbr2 Expression and Coordinate Regulation of Neuronal Output. J. Neurosci., 28 (14). pp. 3707-3717.

Holtmaat, A. J. G. D., Trachtenberg, J. T., Wilbrecht, L., Shepherd, G. M., Zhang, Xi., Knott, G. W., Svoboda, Karel. (January 2005) Transient and persistent dendritic spines in the neocortex in vivo. Neuron, 45 (2). pp. 279-91. ISSN 0896-6273 (Print)

Honegger, K. S., Campbell, R. A. A., Turner, G. C. (August 2011) Cellular-Resolution Population Imaging Reveals Robust Sparse Coding in the Drosophila Mushroom Body. Journal of Neuroscience, 31 (33). pp. 11772-11785. ISSN 0270-6474

Hromádka, T., Deweese, M. R., Zador, A. M. (January 2008) Sparse representation of sounds in the unanesthetized auditory cortex. PLoS Biology, 6 (1). e16. ISSN 1545-7885 (Electronic)

Hrvatin, S., Hochbaum, D. R., Nagy, M. A., Cicconet, M., Robertson, K., Cheadle, L., Zilionis, R., Ratner, A., Borges-Monroy, R., Klein, A. M., Sabatini, B. L., Greenberg, M. E. (January 2018) Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci, 21 (1). pp. 120-129. ISSN 1097-6256 (Print)1097-6256

Hua, Y., Sahashi, K., Hung, G., Rigo, F., Passini, M. A., Bennett, C. F., Krainer, A. R. (August 2010) Antisense correction of SMN2 splicing in the CNS rescues necrosis in a type III SMA mouse model. Genes and Development, 24 (15). pp. 1634-44. ISSN 08909369 (ISSN)

Hua, Y., Sahashi, K., Rigo, F., Hung, G., Horev, G., Bennett, C. F., Krainer, A. R. (October 2011) Peripheral SMN restoration is essential for long-term rescue of a severe spinal muscular atrophy mouse model. Nature, 478 (7367). pp. 123-6. ISSN 1476-4687 (Electronic) 0028-0836 (Linking)

Huang, Z. J. (May 2009) Activity-dependent development of inhibitory synapses and innervation pattern: role of GABA signalling and beyond. Journal of Physiology-London, 587 (9). pp. 1881-1888. ISSN 0022-3751

Huang, Z. J. (May 2010) Assembly of GABAergic Inhibitory Circuits in Neocortex and Implications in Neurodevelopmental Disorders. Biological Psychiatry, 67 (9). p. 633. ISSN 0006-3223

Huang, Z. J. (February 2006) Subcellular organization of GABAergic synapses: role of ankyrins and L1 cell adhesion molecules. Nat Neurosci, 9 (2). pp. 163-166.

Huang, Z. J., Kirkwood, A., Pizzorusso, T., Porciatti, V., Morales, B., Bear, M. F., Maffei, L., Tonegawa, S. (1999) BDNF regulates the maturation of inhibition and the critical period of plasticity in mouse visual cortex. Cell, 98 (6). pp. 739-755. ISSN 00928674 (ISSN)

Huang, Z. J., Paul, A. (June 2019) The diversity of GABAergic neurons and neural communication elements. Nat Rev Neurosci, 29 (9). pp. 563-572. ISSN 1471-003x

Huang, Z. J., Satterlie, R. A. (1990) Neuronal mechanisms underlying behavioral switching in a pteropod mollusc. Journal of Comparative Physiology - A Sensory, Neural, and Behavioral Physiology, 166 (6). pp. 875-887. ISSN 03407594 (ISSN)

Huang, Z. J., Taniguchi, H., He, M., Kuhlman, S. (February 2014) Cre-dependent adeno-associated virus preparation and delivery for labeling neurons in the mouse brain. Cold Spring Harb Protoc, 2014 (2). pp. 190-4. ISSN 1559-6095 (Electronic)1559-6095 (Linking)

Huang, Z. J., Taniguchi, H., He, M., Kuhlman, S. (February 2014) Genetic labeling of neurons in mouse brain. Cold Spring Harb Protoc, 2014 (2). pp. 150-60. ISSN 1559-6095 (Electronic)1559-6095 (Linking)

Huang, Z. J., Yu, W., Lovett, C., Tonegawa, S. (2002) Cre/loxP recombination-activated neuronal markers in mouse neocortex and hippocampus. Genesis, 32 (3). pp. 209-217. ISSN 1526954X (ISSN)

Huang, Z. J., Zeng, H. (July 2013) Genetic Approaches to Neural Circuits in the Mouse. Annual Review of Neuroscience, 36. ISSN 0147-006X

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Huckfeldt, R. M., Schubert, T., Morgan, J. L., Godinho, L., Di Cristo, G., Huang, Z. J., Wong, R. O. L. (January 2009) Transient neurites of retinal horizontal cells exhibit columnar tiling via homotypic interactions. Nat Neurosci, 12 (1). 35 - 43 .

Huilgol, Dhananjay, Levine, Jesse M, Galbavy, William, Wang, Bor-Shuen, He, Miao, Suryanarayana, Shreyas M, Huang, Z Josh (August 2023) Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types in cerebral cortex. Neuron, 111 (16). 2557-2569.e4. ISSN 0896-6273

Huilgol, Dhananjay, Russ, Jeffrey B, Srivas, Sweta, Huang, Z Josh (August 2023) The progenitor basis of cortical projection neuron diversity. Current Opinion in Neurobiology, 81. p. 102726. ISSN 0959-4388

Huilgol, Dhananjay, Levine, Jesse, Galbavy, William, Wang, Bor-Shuen, He, Miao, Suryanarayana, Shreyas, Huang, Josh (March 2022) Direct and indirect neurogenesis generate a mosaic of distinct glutamatergic projection neuron types and cortical subnetworks. BioRxiv. (Unpublished)

Hwang, D. W., Jaganathan, A., Shrestha, P., Jin, Y., El-Amine, N., Wang, S. H., Hammell, M., Mills, A. A. (August 2018) Chromatin-mediated translational control is essential for neural cell fate specification. Life Sci Alliance, 1 (4). e201700016. ISSN 2575-1077

J

Jacobs, W. B., Govoni, G., Ho, D., Atwal, J. K., Barnabe-Heider, F., Keyes, W. M., Mills, A. A., Miller, F. D., Kaplan, D. R. (December 2005) p63 is an essential proapoptotic protein during neural development. Neuron, 48 (5). pp. 743-756. ISSN 0896-6273

Jakkamsetti, Vikram, Tsai, Nien-Pei, Gross, Christina, Molinaro, Gemma, Collins, Katie A, Nicoletti, Ferdinando, Wang, Kuan H, Osten, Pavel, Bassell, Gary J, Gibson, Jay R, Huber, Kimberly M (October 2013) Experience-Induced Arc/Arg3.1 Primes CA1 Pyramidal Neurons for Metabotropic Glutamate Receptor-Dependent Long-Term Synaptic Depression. Neuron, 80 (1). pp. 72-79. ISSN 0896-6273

Jaramillo, E. S., Zador, A. M. (December 2010) The auditory cortex mediates the perceptual effects of acoustic temporal expectation. Nat Neurosci, 14 (2). pp. 246-51. ISSN 1546-1726 (Electronic) 1097-6256 (Linking)

Javadzadeh, Mitra, Hofer, Sonja B (August 2022) Dynamic causal communication channels between neocortical areas. Neuron, 110 (15). 2470-2483.e7. ISSN 0896-6273

Jeong, M., Kim, Y., Kim, J., Ferrante, D. D., Mitra, P. P., Osten, P., Kim, D. (February 2016) Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports, 6. ISSN 20452322

Jorstad, Nikolas L, Close, Jennie, Johansen, Nelson, Yanny, Anna Marie, Barkan, Eliza R, Travaglini, Kyle J, Bertagnolli, Darren, Campos, Jazmin, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Ding, Song-Lin, Gelfand, Emily, Goldy, Jeff, Hirschstein, Daniel, Kiick, Katelyn, Kroll, Matthew, Kunst, Michael, Lathia, Kanan, Long, Brian, Martin, Naomi, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Ruiz, Augustin, Shapovalova, Nadiya, Shehata, Soraya, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Callaway, Edward M, Hof, Patrick R, Keene, C Dirk, Levi, Boaz P, Linnarsson, Sten, Mitra, Partha P, Smith, Kimberly, Hodge, Rebecca D, Bakken, Trygve E, Lein, Ed S (October 2023) Transcriptomic cytoarchitecture reveals principles of human neocortex organization. Science, 382 (6667). eadf6812. ISSN 0036-8075

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice. Elife, 8. ISSN 2050-084x (Public Dataset)

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice: dataset. [Dataset]

K

Kaufman, M. T., Churchland, M. M., Shenoy, K. V. (May 2013) The roles of monkey M1 neuron classes in movement preparation and execution. Journal of Neurophysiology, 110 (4). pp. 817-825. ISSN 00223077

Kay, L. M., Beshel, J. (August 2010) A Beta Oscillation Network in the Rat Olfactory System During a 2-Alternative Choice Odor Discrimination Task. Journal of Neurophysiology, 104 (2). pp. 829-839. ISSN 0022-3077

Kebschull, J. M., Garcia da Silva, P., Zador, A. M. (May 2016) A New Defective Helper RNA to Produce Recombinant Sindbis Virus that Infects Neurons but does not Propagate. Front Neuroanat, 10. p. 56. ISSN 1662-5129 (Electronic)1662-5129 (Linking)

Kebschull, Justus M, Garcia da Silva, Pedro, Reid, Ashlan P, Peikon, Ian D, Albeanu, Dinu F, Zador, Anthony M (September 2016) High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA. Neuron, 91 (5). pp. 975-987. ISSN 0896-6273 (Public Dataset)

Kepecs, A. (November 2011) Talk from Adam Kepecs at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Kepecs, A., Lisman, J. (June 2004) How to read a burst duration code. Neurocomputing, 58-60. pp. 1-6. ISSN 0925-2312

Kepecs, A., Ragachavari, S. (2002) 3 State Neurons for Contextual Processing. In: Advances in Neural Information Processing Systems 14: Proceedings of the 2001 Conference. MIT Press, pp. 229-236. ISBN 9780262042062

Kepecs, A., Wang, X. J. (2000) Analysis of complex bursting in cortical pyramidal neuron models. Neurocomputing, 32-33. pp. 181-187. ISSN 09252312 (ISSN)

Kepecs, A., Wang, X. J., Lisman, J. (2002) Bursting neurons signal input slope. Journal of Neuroscience, 22 (20). pp. 9053-9062. ISSN 02706474 (ISSN)

Kepple, D. R., Giaffar, H., Rinberg, D., Koulakov, A. A. (October 2018) Primacy coding in dual olfactory networks. 51st Asilomar Conference on Signals, Systems, and Computers, 2017-O. pp. 587-592.

Kleinfeld, D., Luan, L., Mitra, P. P., Robinson, J. T., Sarpeshkar, R., Shepard, K., Xie, C., Harris, T. D. (August 2019) Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain? Neuron, 103 (6). pp. 1005-1015. ISSN 0896-6273

Kobak, D., Brendel, W., Constantinidis, C., Feierstein, C. E., Kepecs, A., Mainen, Z. F., Romo, R., Qi, X. L., Uchida, N., Machens, C. K. (April 2016) Demixed principal component analysis of neural population data. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Kolterman, B. E., Koulakov, A. A. (April 2010) Is universal coverage good for neurons? Neuron, 66 (1). pp. 1-3. ISSN 1097-4199 (Electronic) 0896-6273 (Linking)

Komai, S., Denk, W., Osten, P., Brecht, M., Margrie, T. W. (2006) Two-photon targeted patching (TPTP) in vivo. Nature Protocols, 1 (2). pp. 647-52. ISSN 1745-2473

Komai, S., Licznerski, P., Cetin, A., Waters, J., Denk, W., Brecht, M., Osten, P. (September 2006) Postsynaptic excitability is necessary for strengthening of cortical sensory responses during experience-dependent development. Nature Neuroscience, 9 (9). pp. 1125-33. ISSN 1097-6256

Koo, Peter K, Ploenzke, Matt, Anand, Praveen, Paul, Steffan, Majdandzic, Antonio (2023) ResidualBind: Uncovering Sequence-Structure Preferences of RNA-Binding Proteins with Deep Neural Networks. Methods in Molecular Biology, 2586. pp. 197-215. ISSN 1064-3745

Kopp, S. J., Banisadr, G., Glajch, K., Maurer, U. E., Grunewald, K., Miller, R. J., Osten, P., Spear, P. G. (October 2009) Infection of neurons and encephalitis after intracranial inoculation of herpes simplex virus requires the entry receptor nectin-1. Proceedings of the National Academy of Sciences of the United States of America, 106 (42). pp. 17916-20. ISSN 0027-8424

Koulakov, A. A., Rinberg, D. (October 2011) Sparse Incomplete Representations: A Potential Role of Olfactory Granule Cells. Neuron, 72 (1). pp. 124-136. ISSN 0896-6273

Koulakov, A. A., Rinberg, D. A., Tsigankov, D. N. (December 2005) How to find decision makers in neural networks. Biological Cybernetics, 94 (1). pp. 86-88. ISSN 03401200

Krasnov, P. A., Enikolopov, G. (April 2000) Targeting of synaptotagmin to neurite terminals in neuronally differentiated PC12 cells. Journal of Cell Science, 113 (8). pp. 1389-1404. ISSN 0021-9533

Krause, William C, Rodriguez, Ruben, Gegenhuber, Bruno, Matharu, Navneet, Rodriguez, Andreas N, Padilla-Roger, Adriana M, Toma, Kenichi, Herber, Candice B, Correa, Stephanie M, Duan, Xin, Ahituv, Nadav, Tollkuhn, Jessica, Ingraham, Holly A (October 2021) Oestrogen engages brain MC4R signalling to drive physical activity in female mice. Nature. ISSN 0028-0836

Kressel, A. M., Tsaava, T., Levine, Y. A., Chang, E. H., Addorisio, M. E., Chang, Q., Burbach, B. J., Carnevale, D., Lembo, G., Zador, A. M., Andersson, U., Pavlov, V. A., Chavan, S. S., Tracey, K. J. (November 2020) Identification of a brainstem locus that inhibits tumor necrosis factor. Proc Natl Acad Sci U S A, 117 (47). pp. 29803-29810. ISSN 0027-8424 (Print)0027-8424

Kuhlman, S. J., Huang, Z. J. (April 2008) High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression. PLoS ONE, 3 (4). e2005. ISSN 1932-6203 (Electronic)

Kuhlman, S. J., Lu, J., Lazarus, M. S., Huang, Z. J. (June 2010) Maturation of GABAergic inhibition promotes strengthening of temporally coherent inputs among convergent pathways. PLoS Computational Biology, 6 (6). e1000797. ISSN 1553734X

L

Langdon, Christopher, Genkin, Mikhail, Engel, Tatiana A (April 2023) A unifying perspective on neural manifolds and circuits for cognition. Nature Reviews Neuroscience. ISSN 1471-003X

Li, B., Piriz, J., Mirrione, M., Chung, C. H., Proulx, C. D., Schulz, D., Henn, F. A., Malinow, R. (February 2011) Synaptic potentiation onto habenula neurons in the learned helplessness model of depression. Nature, 470 (7335). 535-U125. ISSN 0028-0836

Li, W., Cressy, M., Qin, H., Fulga, T., Van Vactor, D., Dubnau, J. (March 2013) MicroRNA-276a Functions in Ellipsoid Body and Mushroom Body Neurons for Naive and Conditioned Olfactory Avoidance in Drosophila. Journal of Neuroscience, 33 (13). pp. 5821-33. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Li, Y., Wang, D., Ascoli, G. A., Mitra, P., Wang, Y. (August 2017) Metrics for comparing neuronal tree shapes based on persistent homology. PLoS One, 12 (8). e0182184. ISSN 1932-6203

Li, Z., Van Aelst, L., Cline, H. T. (March 2000) Rho GTPases regulate distinct aspects of dendritic arbor growth in Xenopus central neurons in vivo. Nature Neuroscience, 3 (3). pp. 217-225. ISSN 1097-6256

Li, S., Kendall, J., Park, S., Wang, Z., Alexander, J., Moffitt, A., Ranade, N., Danyko, C., Gegenhuber, B., Fischer, S., Robinson, B. D., Lepor, H., Tollkuhn, J., Gillis, J., Brouzes, E., Krasnitz, A., Levy, D., Wigler, M. (November 2019) Copolymerization of single-cell nucleic acids into balls of acrylamide gel. Genome Res, 30 (1). pp. 49-61. ISSN 1088-9051 (Public Dataset)

Lima, S. Q., Hromadka, T., Znamenskiy, P., Zador, A. M. (July 2009) PINP: a new method of tagging neuronal populations for identification during in vivo electrophysiological recording. PLoS ONE, 4 (7). e6099. ISSN 1932-6203 (Electronic)

Liu, Y., Li, M., Zhang, X., Lu, Y., Gong, H., Yin, J., Chen, Z., Qian, L., Yang, Y., Andolina, I. M., Shipp, S., McLoughlin, N., Tang, S., Wang, W. (August 2020) Hierarchical Representation for Chromatic Processing across Macaque V1, V2, and V4. Neuron, 108 (3). pp. 538-550. ISSN 0896-6273

Lu, Y., Lv, Y., Ye, Y., Wang, Y., Hong, Y., Fortini, M. E., Zhong, Y., Xie, Z. (August 2007) A role for presenilin in post-stress regulation: effects of presenilin mutations on Ca2+ currents in Drosophila. Faseb Journal, 21 (10). pp. 2368-2378. ISSN 1530-6860 (Electronic)

Luna, R., Hernandez, A., Brody, C. D., Romo, R. (September 2005) Neural codes for perceptual discrimination in primary somatosensory cortex. Nature Neuroscience, 8 (9). pp. 1210-1219. ISSN 1097-6256

M

Ma, W. P., Liu, B. H., Li, Y. T., Huang, Z. J., Zhang, L. I., Tao, H. W. (October 2010) Visual representations by cortical somatostatin inhibitory neurons--selective but with weak and delayed responses. Journal of Neuroscience, 30 (43). pp. 14371-9. ISSN 0270-6474

Machens, C. K., Gollisch, T., Kolesnikova, O., Herz, A. V. (August 2005) Testing the efficiency of sensory coding with optimal stimulus ensembles. Neuron, 47 (3). pp. 447-56. ISSN 0896-6273 (Print)

Machens, C. K., Romo, R., Brody, C. D. (February 2005) Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science, 307 (5712). pp. 1121-4. ISSN 1095-9203 (Electronic)

Mainen, Z. F., Malinow, R., Svoboda, K. (May 1999) Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated. Nature, 399 (6732). pp. 151-5. ISSN 0028-0836 (Print)

Majka, P., Rosa, M. G. P., Bai, S., Chan, J. M., Huo, B. X., Jermakow, N., Lin, M. K., Takahashi, Y. S., Wolkowicz, I. H., Worthy, K. H., Rajan, R., Reser, D. H., Wójcik, D. K., Okano, H., Mitra, P. P. (October 2018) Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey. Brain Structure and Function, 224 (1). pp. 111-131. ISSN 18632653 (ISSN)

Majka, P., Bai, S., Bakola, S., Bednarek, S., Chan, J. M., Jermakow, N., Passarelli, L., Reser, D. H., Theodoni, P., Worthy, K. H., Wang, X. J., Wojcik, D. K., Mitra, P. P., Rosa, M. G. P. (February 2020) Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nat Commun, 11 (1). p. 1133. ISSN 2041-1723 (Public Dataset)

Maletic-Savatic, M., Malinow, R. (September 1998) Calcium-evoked dendritic exocytosis in cultured hippocampal neurons. Part I: trans-Golgi network-derived organelles undergo regulated exocytosis. Journal of Neuroscience, 18 (17). pp. 6803-13. ISSN 0270-6474

Maletic-Savatic, M., Koothan, T., Malinow, R. (September 1998) Calcium-evoked dendritic exocytosis in cultured hippocampal neurons. Part II: mediation by calcium/calmodulin-dependent protein kinase II. Journal of Neuroscience, 18 (17). pp. 6814-21. ISSN 0270-6474

Malinow, R. (December 1998) Silencing the controversy in LTP? Neuron, 21 (6). pp. 1226-7. ISSN 0896-6273 (Print)

Malinow, R. (May 1991) Transmission between pairs of hippocampal slice neurons: quantal levels, oscillations, and LTP. Science, 252 (5006). pp. 722-4. ISSN 0036-8075 (Print)0036-8075 (Linking)

Malinow, R., Hayashi, Y., Maletic-Savatic, M., Zaman, S. H., Poncer, J-C, Shi, S. H., Esteban, J. A. (1999) Introduction of green fluorescent protein into hippocampal neurons through viral infection. In: Imaging neurons : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0879695420

Malinow, R., Hayashi, Y., Maletic-Savatic, M., Zaman, S. H., Poncer, J. C., Shi, S. H., Esteban, J. A., Osten, P., Seidenman, K. (2010) Introduction of green fluorescent protein (GFP) into hippocampal neurons through viral infection. Cold Spring Harbor Protocols, 5 (4). ISSN 15596095 (ISSN)

Mandal, S., Stanco, A., Buys, E. S., Enikolopov, G., Rubenstein, J. L. (October 2013) Soluble Guanylate Cyclase Generation of cGMP Regulates Migration of MGE Neurons. Journal of Neuroscience, 33 (43). pp. 16897-914. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Mandelbaum, G., Taranda, J., Haynes, T. M., Hochbaum, D. R., Huang, K. W., Hyun, M., Umadevi Venkataraju, K., Straub, C., Wang, W., Robertson, K., Osten, P., Sabatini, B. L. (March 2019) Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus. Neuron, 102 (3). 636-652 e.. ISSN 0896-6273

Mao, T., O'Connor, D. H., Scheuss, V., Nakai, J., Svoboda, K. (March 2008) Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. PLoS ONE, 3 (3). e1796.

Masset, P., Ott, T., Lak, A., Hirokawa, J., Kepecs, A. (June 2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182. ISSN 0092-8674

Menzer, D. L., Bokil, H., Ryou, J. W., Schiff, N. D., Purpura, K. P., Mitra, P. P. (February 2010) Characterization of trial-to-trial fluctuations in local field potentials recorded in cerebral cortex of awake behaving macaque. Journal of Neuroscience Methods, 186 (2). pp. 250-261.

Mesik, L., Ma, W. P., Li, L. Y., Ibrahim, L. A., Huang, Z. J., Zhang, L. I., Tao, H. W. (May 2015) Functional response properties of VIP-expressing inhibitory neurons in mouse visual and auditory cortex. Front Neural Circuits, 9. p. 22. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Mignone, J. L., Kukekov, V., Chiang, A. S., Steindler, D., Enikolopov, G. (February 2004) Neural stem and progenitor cells in nestin-GFP transgenic mice. J Comp Neurol, 469 (3). pp. 311-24. ISSN 0021-9967 (Print)

Mitra, P. P. (2005) Bending a slab of neural tissue. http://arXiv:q-bio/0510034v2 [q-bio.TO]. pp. 1-6.

Mitra, P. P. (November 2011) Talk from Partha Mitra at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Miyamichi, K., Amat, F., Moussavi, F., Wang, C., Wickersham, I., Wall, N. R., Taniguchi, H., Tasic, B., Huang, Z. J., He, Z., Callaway, E. M., Horowitz, M. A., Luo, L. (2010) Cortical representations of olfactory input by trans-synaptic tracing. Nature, 472 (7342). pp. 191-196. ISSN 0028-0836

Miyamichi, K., Amat, F., Moussavi, F., Wickersham, I., Wall, N. , Huang, Z. J., Callaway, E., Horowitz, M. , Luo, L. (September 2010) Cortical representation of olfactory bulb input revealed by retrograde mono-transsynaptic labeling. Neuroscience Research, 68 (Supple). e391-e391.

Mizuno, K., Carnahan, J., Nawa, H. (September 1994) Brain-derived neurotrophic factor promotes differentiation of striatal GABAergic neurons. Dev Biol, 165 (1). pp. 243-56. ISSN 0012-1606 (Print)

Mohanty, A., Li, Q., Tadayon, M. A., Roberts, S. P., Bhatt, G. R., Shim, E., Ji, X., Cardenas, J., Miller, S. A., Kepecs, A., Lipson, M. (February 2020) Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation. Nat Biomed Eng, 4 (2). pp. 223-231. ISSN 2157-846x (Public Dataset)

Mori, N., Tajima, Y., Sakaguchi, H., Vandenbergh, D. J., Nawa, H., Salvaterra, P. M. (January 1993) Partial Cloning of the Rat Choline-Acetyltransferase Gene and Insitu Localization of Its Transcripts in the Cell Body of Cholinergic Neurons in the Brain-Stem and Spinal-Cord. Molecular Brain Research, 17 (1-2). pp. 101-111. ISSN 0169-328X

Musall, Simon, Sun, Xiaonan R, Mohan, Hemanth, An, Xu, Gluf, Steven, Li, Shu-Jing, Drewes, Rhonda, Cravo, Emma, Lenzi, Irene, Yin, Chaoqun, Kampa, Björn M, Churchland, Anne K (January 2023) Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making. Nature Neuroscience. ISSN 1097-6256

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine S, Chen, Xiaoyin, Wang, Quanxin, Foster, Nicholas N, Li, Anan, Narasimhan, Arun, Hirokawa, Karla E, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael S, Chon, Uree, Wheeler, Diek W, Li, Xiangning, Wang, Yun, Naeemi, Maitham, Xie, Peng, Liu, Lijuan, Kelly, Kathleen, An, Xu, Attili, Sarojini M, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D'Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter A, Gou, Lin, Hahn, Joel D, Hatfield, Joshua T, Hintiryan, Houri, Huang, Junxiang Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Nicovich, Philip R, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong W, Wakemen, Wayne, Wang, Yimin, Yao, Shenqin, Yuan, Jing, Zhan, Huiqing, Zhu, Muye, Ng, Lydia, Zhang, Li I, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James C, Kim, Yongsoo, Chung, Kwanghun, Yang, X William, Peng, Hanchuan, Luo, Qingming, Mitra, Partha P, Zador, Anthony M, Zeng, Hongkui, Ascoli, Giorgio A, Josh Huang, Z, Osten, Pavel, Harris, Julie A, Dong, Hong-Wei (October 2021) Cellular anatomy of the mouse primary motor cortex. Nature, 598 (7879). pp. 159-166. ISSN 0028-0836

N

Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P., Churchland, A. K. (October 2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105 (1). pp. 165-179. ISSN 0896-6273 (Public Dataset)

Najafi, F., Elsayed, G. F., Pnevmatikakis, E., Cunningham, J. P., Churchland, A. K. (2018) Datasets from "Najafi, Farzaneh and Elsayed, Gamaleldin F and Pnevmatikakis, Eftychios and Cunningham, John P and Churchland, Anne K (2018) Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts. [Dataset] (In Press)

Najafi, Farzaneh, Elsayed, Gamaleldin F, Cao, Robin, Pnevmatikakis, Eftychios, Latham, Peter E, Cunningham, John P, Churchland, Anne K (February 2019) Dataset from "Farzaneh Najafi, Gamaleldin F Elsayed, Robin Cao, Eftychios Pnevmatikakis, Peter E. Latham, John P Cunningham, Anne K Churchland (bioRxiv, 2018); Excitatory and inhibitory subnetworks are equally selective during decision-making and emerge simultaneously during learning.”. [Dataset] (Unpublished)

Nandi, S., Gokhan, S., Dai, X. M., Wei, S. W., Enikolopov, G., Lin, H. S., Mehler, M. F., Stanley, E. R. (July 2012) The CSF-1 receptor ligands IL-34 and CSF-1 exhibit distinct developmental brain expression patterns and regulate neural progenitor cell maintenance and maturation. Developmental Biology, 367 (2). pp. 100-113. ISSN 0012-1606

Nawa, H., Bessho, Y., Carnahan, J., Nakanishi, S., Mizuno, K. (February 1993) Regulation of neuropeptide expression in cultured cerebral cortical neurons by brain-derived neurotrophic factor. J Neurochem, 60 (2). pp. 772-5. ISSN 0022-3042 (Print)

Nawa, H., Pelleymounter, M. A., Carnahan, J. (June 1994) Intraventricular Administration of Bdnf Increases Neuropeptide Expression in Newborn Rat-Brain. Journal of Neuroscience, 14 (6). pp. 3751-3765. ISSN 0270-6474

Neiman, Alexander, Engel, Tatiana (2008) Information transfer in ampullary electroreceptors. APS Meeting Abstracts.

Neiman, Alexander, Engel, Tatiana, Russell, David, Helbig, Brian, Schimansky-Geier, Lutz (2009) Epithelial oscillations enhance signal detection in a peripheral sensory system. APS Meeting Abstracts.

Nemec, P., Osten, P. (January 2020) The evolution of brain structure captured in stereotyped cell count and cell type distributions. Curr Opin Neurobiol, 60. pp. 176-183. ISSN 0959-4388

Nienborg, H., Hasenstaub, A., Nauhaus, I., Taniguchi, H., Huang, Z. J., Callaway, E. M. (July 2013) Contrast dependence and differential contributions from somatostatin- and parvalbumin-expressing neurons to spatial integration in mouse v1. Journal of Neuroscience, 33 (27). pp. 11145-54. ISSN 0270-6474

Nikitchenko, M., Koulakov, A. A. (October 2008) Neural Integrator: A Sandpile Model. Neural Comput, 20 (10). pp. 2379-2417.

O

Odoemene, O., Churchland, A.K. (June 2014) Listening for the Right Sounds. Neuron, 82 (5). pp. 944-945. ISSN 0896-6273

Oertner, T. G., Brotz, T. M., Borst, A. (January 2001) Mechanisms of dendritic calcium signaling in fly neurons. Journal of Neurophysiology, 85 (1). pp. 439-447. ISSN 0022-3077

Ogawa, Yuki, Lim, Brian C, George, Shanu, Oses-Prieto, Juan A, Rasband, Joshua M, Eshed-Eisenbach, Yael, Hamdan, Hamdan, Nair, Supna, Boato, Francesco, Peles, Elior, Burlingame, Alma L, Van Aelst, Linda, Rasband, Matthew N (October 2023) Antibody-directed extracellular proximity biotinylation reveals that Contactin-1 regulates axo-axonic innervation of axon initial segments. Nature Communications, 14 (1). p. 6797. ISSN 2041-1723

Ogawa, Yuki, Lim, Brian C, George, Shanu, Oses-Prieto, Juan A, Rasband, Joshua M, Eshed-Eisenbach, Yael, Nair, Supna, Boato, Francesco, Peles, Elior, Burlingame, Alma L, Van Aelst, Linda, Rasband, Matthew N (March 2023) Antibody-directed extracellular proximity biotinylation reveals Contactin-1 regulates axo-axonic innervation of axon initial segments. (Submitted)

Ordovas-Montanes, J., Beyaz, S., Rakoff-Nahoum, S., Shalek, A. K. (February 2020) Distribution and storage of inflammatory memory in barrier tissues. Nat Rev Immunol, 20 (5). pp. 308-320. ISSN 1474-1733

Otazu, G. H., Chae, H. G., Albeanu, D. F. (September 2015) Cortical feedback decorrelates olfactory bulb output in awake mice. Chemical Senses, 40 (7). p. 613. ISSN 0379-864X

Otmakhov, N., Shirke, A. M., Malinow, R. (June 1993) Measuring the impact of probabilistic transmission on neuronal output. Neuron, 10 (6). pp. 1101-11. ISSN 0896-6273 (Print)0896-6273 (Linking)

P

Packer, M. A., Stasiv, Y., Benraiss, A., Chmielnicki, E., Grinberg, A., Westphal, H., Goldman, S. A., Enikolopov, G. (August 2003) Nitric oxide negatively regulates mammalian adult neurogenesis. Proceedings of the National Academy of Sciences of the United States of America, 100 (16). pp. 9566-9571. ISSN 0027-8424

Pai, E. L., Vogt, D., Clemente-Perez, A., McKinsey, G. L., Cho, F. S., Hu, J. S., Wimer, M., Paul, A., Fazel Darbandi, S., Pla, R., Nowakowski, T. J., Goodrich, L. V., Paz, J. T., Rubenstein, J. L. R. (January 2019) Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function. Cell Rep, 26 (5). 1157-1173.e5. ISSN 2211-1247

Pandarinath, C., O'Shea, D. J., Collins, J., Jozefowicz, R., Stavisky, S. D., Kao, J. C., Trautmann, E. M., Kaufman, M. T., Ryu, S. I., Hochberg, L. R., Henderson, J. M., Shenoy, K. V., Abbott, L. F., Sussillo, D. (September 2018) Inferring single-trial neural population dynamics using sequential auto-encoders. Nat Methods, 15 (10). pp. 805-815. ISSN 1548-7091

Patterson, P. H., Nawa, H. (January 1993) Neuronal Differentiation Factors Cytokines and Synaptic Plasticity. Cell, 72 (Suppl). pp. 123-137. ISSN 0092-8674

Paul, A., Crow, M., Raudales, R., He, M., Gillis, J., Huang, Z. J. (2017) Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity. Cell.

Peng, Hanchuan, Liu, Yufeng, Jiang, Shengdian, Li, Yingxin, Zhao, Sujun, Yun, Zhixi, Zhao, Zuo-Han, Zhang, Lingli, Wang, Gaoyu, Chen, Xin, Manubens-Gil, Linus, Hang, Yuning, Garcia-Forn, Marta, Wang, Wei, De Rubeis, Silvia, Wu, Zhuhao, Osten, Pavel, Gong, Hui, Hawrylycz, Michael, Mitra, Partha, Dong, Hong-Wei, Luo, Qingming, Ascoli, Giorgio, Zeng, Hongkui, Liu, Lijuan (July 2023) Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry. (Submitted)

Peng, Hanchuan, Xie, Peng, Liu, Lijuan, Kuang, Xiuli, Wang, Yimin, Qu, Lei, Gong, Hui, Jiang, Shengdian, Li, Anan, Ruan, Zongcai, Ding, Liya, Yao, Zizhen, Chen, Chao, Chen, Mengya, Daigle, Tanya L, Dalley, Rachel, Ding, Zhangcan, Duan, Yanjun, Feiner, Aaron, He, Ping, Hill, Chris, Hirokawa, Karla E, Hong, Guodong, Huang, Lei, Kebede, Sara, Kuo, Hsien-Chi, Larsen, Rachael, Lesnar, Phil, Li, Longfei, Li, Qi, Li, Xiangning, Li, Yaoyao, Li, Yuanyuan, Liu, An, Lu, Donghuan, Mok, Stephanie, Ng, Lydia, Nguyen, Thuc Nghi, Ouyang, Qiang, Pan, Jintao, Shen, Elise, Song, Yuanyuan, Sunkin, Susan M, Tasic, Bosiljka, Veldman, Matthew B, Wakeman, Wayne, Wan, Wan, Wang, Peng, Wang, Quanxin, Wang, Tao, Wang, Yaping, Xiong, Feng, Xiong, Wei, Xu, Wenjie, Ye, Min, Yin, Lulu, Yu, Yang, Yuan, Jia, Yuan, Jing, Yun, Zhixi, Zeng, Shaoqun, Zhang, Shichen, Zhao, Sujun, Zhao, Zijun, Zhou, Zhi, Huang, Z Josh, Esposito, Luke, Hawrylycz, Michael J, Sorensen, Staci A, Yang, X William, Zheng, Yefeng, Gu, Zhongze, Xie, Wei, Koch, Christof, Luo, Qingming, Harris, Julie A, Wang, Yun, Zeng, Hongkui (October 2021) Morphological diversity of single neurons in molecularly defined cell types. Nature, 598 (7879). pp. 174-181. ISSN 0028-0836

Penzo, M. A., Robert, V., Li, B. (February 2014) Fear Conditioning Potentiates Synaptic Transmission onto Long-Range Projection Neurons in the Lateral Subdivision of Central Amygdala. Journal of Neuroscience, 34 (7). pp. 2432-7. ISSN 0270-6474

Perez, J. L., Khatri, L., Chang, C., Srivastava, S., Osten, P., Ziff, E. B. (2001) PICK1 targets activated protein kinase Cα to AMPA receptor clusters in spines of hippocampal neurons and reduces surface levels of the AMPA-type glutamate receptor subunit 2. Journal of Neuroscience, 21 (15). pp. 5417-5428. ISSN 02706474 (ISSN)

Perez-Orive, J., Mazor, O., Turner, G. C., Cassenaer, S., Wilson, R. I., Laurent, G. (2002) Oscillations and sparsening of odor representations in the mushroom body. Science, 297 (5580). pp. 359-365. ISSN 00368075 (ISSN)

Pettit, D. L., Koothan, T., Liao, D., Malinow, R. (April 1995) Vaccinia virus transfection of hippocampal slice neurons. Neuron, 14 (4). pp. 685-8.

Pettit, D. L., Perlman, S., Malinow, R. (December 1994) Potentiated Transmission and Prevention of Further Ltp by Increased Camkii Activity in Postsynaptic Hippocampal Slice Neurons. Science, 266 (5192). pp. 1881-1885. ISSN 0036-8075

Peunova, N., Enikolopov, G. (July 1993) Amplification of calcium-induced gene transcription by nitric oxide in neuronal cells. Nature, 364 (6436). pp. 450-453. ISSN 0028-0836

Peunova, N., Enikolopov, G. (May 1995) Nitric oxide triggers a switch to growth arrest during differentiation of neuronal cells. Nature, 375 (6526). pp. 68-73. ISSN 0028-0836

Phan, Minh Son, Matho, Katherine, Beaurepaire, Emmanuel, Livet, Jean, Chessel, Anatole (July 2022) nAdder: A scale-space approach for the 3D analysis of neuronal traces. PLoS Computational Biology, 18 (7). e1010211. ISSN 1553-734X

Pouchelon, Gabrielle, Frangeul, Laura, Rijli, Filippo M, Jabaudon, Denis (May 2012) Patterning of pre-thalamic somatosensory pathways. European Journal of Neuroscience, 35 (10). pp. 1533-1539. ISSN 0953-816X

Q

Qian, Yongjun, Li, Jiayun, Zhao, Shengli, Matthews, Elizabeth A, Adoff, Michael, Zhong, Weixin, An, Xu, Yeo, Michele, Park, Christine, Yang, Xiaolu, Wang, Bor-Shuen, Southwell, Derek G, Huang, Z Josh (October 2022) Programmable RNA sensing for cell monitoring and manipulation. Nature. ISSN 0028-0836

R

Ranade, S. P., Mainen, Z. F. (August 2009) Transient firing of dorsal raphe neurons encodes diverse and specific sensory, motor and reward events. Journal of Neurophysiology, 102 (5). pp. 3026-3037. ISSN 00223077 (ISSN)

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Datasets from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]

Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Matlab code for running the PAIRS and Variance Alignment Analyses from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]

Raposo, David, Kaufman, Matthew T., Churchland, Anne K. (December 2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience, 17 (12). pp. 1784-1792. ISSN 1546-1726

Ray, S. S., Sengupta, R., Tiso, M., Haque, M. M., Sahoo, R., Konas, D. W., Aulak, K., Regulski, M. R., Tully, T., Stuehr, D. J., Ghosh, S. (October 2007) Reductase Domain of Drosophila melanogaster Nitric-Oxide Synthase: Redox Transformations, Regulation, and Similarity to Mammalian Homologues. Biochemistry, 46 (42). pp. 11865-11873. ISSN 0006-2960 (Print)

Ray, S. S., Tejero, J., Wang, Z. Q., Dutta, T., Bhattacharjee, A., Regulski, M. R., Tully, T., Ghosh, S., Stuehr, D. J. (October 2007) Oxygenase Domain of Drosophila melanogaster Nitric Oxide Synthase: Unique Kinetic Parameters Enable a More Efficient NO Release. Biochemistry, 46 (42). pp. 11857-11864. ISSN 0006-2960 (Print)

Reigl, M., Alon, U., Chklovskii, D. B. (2004) Search for computational modules in the C. elegans brain. BMC Biol, 2. p. 25. ISSN 1741-7007 (Electronic)

Rigo, F., Chun, S. J., Norris, D. A., Hung, G., Lee, S., Matson, J., Fey, R. A., Gaus, H., Hua, Y., Grundy, J. S., Krainer, A. R., Henry, S. P., Bennett, C. F. (July 2014) Pharmacology of a central nervous system delivered 2′-O-methoxyethyl- modified survival of motor neuron splicing oligonucleotide in mice and nonhuman primates. Journal of Pharmacology and Experimental Therapeutics, 350 (1). pp. 46-55. ISSN 15210103

Roach, James, Churchland, Anne, Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits. (Submitted)

Roach, James P, Churchland, Anne K, Engel, Tatiana A (January 2023) Choice selective inhibition drives stability and competition in decision circuits. Nature Communications, 14 (1). p. 147. ISSN 2041-1723

Rockland, K. S. (March 2014) Zinc-positive and zinc-negative connections of the claustrum. Frontiers in Systems Neuroscience, 8 (MAR).

Ruiz-Reig, N., Andres, B., Huilgol, D., Grove, E. A., Tissir, F., Tole, S., Theil, T., Herrera, E., Fairen, A. (May 2017) Lateral Thalamic Eminence: A Novel Origin for mGluR1/Lot Cells. Cereb Cortex, 27 (5). pp. 2841-2856. ISSN 1460-2199 (Electronic)1047-3211 (Linking)

Runyan, C. A., Schummers, J., Van Wart, A., Kuhlman, S. J., Wilson, N. R., Huang, Z. J., Sur, M. (September 2010) Response Features of Parvalbumin-Expressing Interneurons Suggest Precise Roles for Subtypes of Inhibition in Visual Cortex. Neuron, 67 (5). pp. 847-857.

Ruthazer, E. S., Cline, H. T. (April 2004) Insights into activity-dependent map formation from the retinotectal system: a middle-of-the-brain perspective. J Neurobiol, 59 (1). pp. 134-46. ISSN 0022-3034 (Print)

Ruthazer, E. S., Cline, H. T. (June 2002) Multiphoton imaging of neurons in living tissue: Acquisition and analysis of time-lapse morphological data. Real-Time Imaging, 8 (3). pp. 175-188. ISSN 1077-2014

S

Sapiro, A. L., Shmueli, A., Henry, G. L., Li, Q., Shalit, T., Yaron, O., Paas, Y., Billy Li, J., Shohat-Ophir, G. (February 2019) Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain. Proc Natl Acad Sci U S A, 116 (6). pp. 2318-2327. ISSN 0027-8424

Sato, T. R., Gray, N. W., Mainen, Z. F., Svoboda, K. (July 2007) The Functional Microarchitecture of the Mouse Barrel Cortex. PLoS Biology, 5 (7). e189.

Scheuss, V., Yasuda, R., Sobczyk, A., Svoboda, K. (August 2006) Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. J Neurosci, 26 (31). pp. 8183-94. ISSN 1529-2401 (Electronic)

Schmitt, A., Zink, M., Petroianu, G., May, B., Braus, D. F., Henn, F. A. (August 2003) Decreased gene expression of glial and neuronal glutamate transporters after chronic antipsychotic treatment in rat brain. Neuroscience Letters, 347 (2). pp. 81-4. ISSN 03043940 (ISSN)

Sellstrom, A., Henn, F., Jacobson, I., Venema, R. (October 1981) On the Ca2+-permeability of neurons and glia. Acta physiologica Scandinavica, 113 (2). pp. 253-8. ISSN 0001-6772 (Print)0001-6772

Sellstrom, A., Henn, F., Jacobson, I., Venema, R. (October 1981) On the Ca2+-permeability of neurons and glia. Acta Physiol Scand, 113 (2). pp. 253-8.

Shea, S. D., Koch, H., Baleckaitis, D., Ramirez, J. M., Margoliash, D. (February 2010) Neuron-Specific Cholinergic Modulation of a Forebrain Song Control Nucleus. Journal of Neurophysiology, 103 (2). pp. 733-745. ISSN 0022-3077

Shea, S. D., Margoliash, D. (March 2010) Behavioral state-dependent reconfiguration of song-related network activity and cholinergic systems. Journal of Chemical Neuroanatomy, 39 (2). pp. 132-140. ISSN 0891-0618

Shen, Yang, Dasgupta, Sanjoy, Navlakha, Saket (September 2023) Reducing Catastrophic Forgetting With Associative Learning: A Lesson From Fruit Flies. Neural Computation. pp. 1-23. ISSN 0899-7667

Shen, Yang, Wang, Julia, Navlakha, Saket (August 2021) A Correspondence between Normalization Strategies in Artificial and Biological Neural Networks. Neural Computation. pp. 1-25. ISSN 0899-7667

Sheng, L., Rigo, F., Bennett, C. F., Krainer, A. R., Hua, Y. (April 2020) Comparison of the Efficacy of MOE and PMO Modifications of Systemic Antisense Oligonucleotides in a Severe SMA Mouse Model. Nucleic Acids Research, 6 (48). pp. 2853-2865. ISSN 0305-1048 (Public Dataset)

Shi, S. H., Hayashi, Y., Petralia, R. S., Zaman, S. H., Wenthold, R. J., Svoboda, K., Malinow, R. (June 1999) Rapid spine delivery and redistribution of AMPA receptors after synaptic NMDA receptor activation. Science, 284 (5421). pp. 1811-6. ISSN 0036-8075 (Print)

Shi, YL, Zeraati, R, Levina, A, Engel, TA (January 2023) Spatial and temporal correlations in neural networks with structured connectivity. Physical Review Research, 5 (1). ISSN 2643-1564

Shirke, A. M., Malinow, R. (November 1997) Mechanisms of potentiation by calcium-calmodulin kinase II of postsynaptic sensitivity in rat hippocampal CA1 neurons. Journal of Neurophysiology, 78 (5). pp. 2682-92.

Shrestha, Padmina, Jaganathan, Anbalagan, Huilgol, Dhananjay, Ballon, Carlos, Hwangbo, Yon, Mills, Alea A (January 2023) Chd5 regulates the transcription factor Six3 to promote neuronal differentiation. Stem Cells. sxad002. ISSN 1066-5099 (Public Dataset)

Shuai, Y. C., Lu, B., Hu, Y., Wang, L., Sun, K., Zhong, Y. (February 2010) Forgetting Is Regulated through Rac Activity in Drosophila. Cell, 140 (4). pp. 579-589.

Shusterman, R., Smear, M. C., Koulakov, A. A., Rinberg, D. (August 2011) Precise olfactory responses tile the sniff cycle. Nature Neuroscience, 14 (8). 1039-U136. ISSN 1097-6256

Sierra, A., Encinas, J. M., Deudero, J. J. P., Chancey, J. H., Enikolopov, G., Overstreet-Wadiche, L. S., Tsirka, S. E., Maletic-Savatic, M. (October 2011) Microglial phagocytosis shapes adult hippocampal neurogenesis. Glia, 59. S17-S17. ISSN 0894-1491

Sierra, A., Encinas, J. M., Deudero, J. J. P., Chancey, J. H., Enikolopov, G. N., Overstreet-Wadiche, L. S., Tsirka, S. E., Maletic-Savatic, M. (October 2010) Microglia shape adult hippocampal neurogenesis through apoptosis-coupled phagocytosis. Cell Stem Cell, 7 (4). pp. 483-495.

Smetters, D. K., Zador, A. (1996) Synaptic transmission: Noisy synapses and noisy neurons. Current Biology, 6 (10). pp. 1217-1218.

Song, J., Zhong, C., Bonaguidi, M. A., Sun, G. J., Hsu, D., Gu, Y., Meletis, K., Huang, Z. J., Ge, S., Enikolopov, G., Deisseroth, K., Luscher, B., Christian, K. M., Ming, G. L., Song, H. (September 2012) Neuronal circuitry mechanism regulating adult quiescent neural stem-cell fate decision. Nature, 489 (7414). pp. 150-154. ISSN 0028-0836

Sordella, R., Van Aelst, L. (2006) Driving Actin Dynamics under the Influence of Alcohol. Cell, 127 (1). pp. 37-39. ISSN 00928674

Stamm, S., Casper, D., Dinsmore, J., Kaufmann, C. A., Brosius, J., Helfman, D. M. (October 1992) Clathrin light chain B: gene structure and neuron-specific splicing. Nucleic Acids Res, 20 (19). pp. 5097-103. ISSN 0305-1048 (Print)0305-1048 (Linking)

Stamm, S., Zhang, M. Q., Marr, T. G., Helfman, D. M. (May 1994) A sequence compilation and comparison of exons that are alternatively spliced in neurons. Nucleic Acids Res, 22 (9). pp. 1515-26. ISSN 0305-1048 (Print)

Stella, Roberto, Cifani, Paolo, Peggion, Caterina, Hansson, Karin, Lazzari, Cristian, Bendz, Maria, Levander, Fredrik, Sorgato, Maria Catia, Bertoli, Alessandro, James, Peter (February 2012) Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons. Journal of Proteome Research, 11 (2). pp. 523-536. ISSN 1535-3893

Stepanyants, A., Tamas, G., Chklovskii, D. B. (July 2004) Class-specific features of neuronal wiring. Neuron, 43 (2). pp. 251-9. ISSN 0896-6273 (Print)

Stephenson-Jones, M., Bravo-Rivera, C., Ahrens, S., Furlan, A., Xiao, X., Fernandes-Henriques, C., Li, B. (January 2020) Opposing Contributions of GABAergic and Glutamatergic Ventral Pallidal Neurons to Motivational Behaviors. Neuron. ISSN 0896-6273

Sublette, E., Naik, M. U., Jiang, X., Osten, P., Valsamis, H., Osada, S., Ohno, S., Sacktor, T. C. (1993) Evidence for a new, high-molecular weight isoform of protein kinase C in rat hippocampus. Neuroscience Letters, 159 (1-2). pp. 175-178. ISSN 03043940 (ISSN)

Sugino, K., Hempel, C. M., Miller, M. N., Hattox, A. M., Shapiro, P., Wu, C., Huang, Z. J., Nelson, S. B. (2006) Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nature Neuroscience, 9 (1). pp. 99-107. ISSN 10976256

Sulger, J., Dumais-Huber, C., Zerfass, R., Henn, F. A., Aldenhoff, J. B. (March 1999) The calcium response of human T lymphocytes is decreased in aging but increased in Alzheimer's dementia. Biological Psychiatry, 45 (6). pp. 737-42. ISSN 0006-3223 (Print)0006-3223 (Linking)

Sun, Qingtao, van de Lisdonk, Daniëlle, Ferrer, Miriam, Gegenhuber, Bruno, Wu, Melody, Tollkuhn, Jessica, Janowitz, Tobias, Li, Bo (January 2023) Area postrema neurons mediate interleukin-6 function in cancer-associated cachexia. bioRxiv. (Unpublished)

Svitkina, T., Lin, W. H., Webb, D. J., Yasuda, R., Wayman, G. A., Van Aelst, L., Soderling, S. H. (November 2010) Regulation of the Postsynaptic Cytoskeleton: Roles in Development, Plasticity, and Disorders. J Neurosci, 30 (45). pp. 14937-14942. ISSN 1529-2401 (Electronic) 0270-6474 (Linking)

Svoboda, K., Mainen, Z. F. (March 1999) Synaptic [Ca2+]: intracellular stores spill their guts. Neuron, 22 (3). pp. 427-30. ISSN 0896-6273 (Print)

Svoboda, K., Ugurbil, K. (October 2003) New technologies: probing neurons and their networks - Editorial Overview. Current Opinion in Neurobiology, 13 (5). pp. 568-569. ISSN 0959-4388

Szadai, Zoltán, Pi, Hyun-Jae, Chevy, Quentin, Ócsai, Katalin, Albeanu, Dinu F, Chiovini, Balázs, Szalay, Gergely, Katona, Gergely, Kepecs, Adam, Rózsa, Balázs (November 2022) Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment. eLife, 11. e78815. ISSN 2050-084X

Szele, F. G., Walker, A. S., Goings, G. E., Kim, Y., Miller, R. J., Chenn, A. (2010) Nestin reporter transgene labels multiple central nervous system precursor cells. Neural Plasticity, 2010. ISSN 07928483 (ISSN)

T

Tai, Y., Gallo, N. B., Wang, M., Yu, J. R., Van Aelst, L. (February 2019) Axo-axonic Innervation of Neocortical Pyramidal Neurons by GABAergic Chandelier Cells Requires AnkyrinG-Associated L1CAM. Neuron, 102 (2). pp. 267-270. ISSN 0896-6273

Tan, Z., Hu, H., Huang, Z. J., Agmon, A. (February 2008) Robust but delayed thalamocortical activation of dendritic-targeting inhibitory interneurons. Proc Natl Acad Sci U S A, 105 (6). pp. 2187-2192.

Taniguchi, H., He, M., Wu, P., Kim, S., Paik, R., Sugino, K., Kvitsani, D., Fu, Y., Lu, J., Lin, Y., Miyoshi, G., Shima, Y., Fishell, G., Nelson, S. B., Huang, Z.  J. (September 2011) A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex. Neuron, 71 (6). pp. 995-1013. ISSN 0896-6273

Tervo, D. G. R., Karpova, A. Y. (October 2007) Rapidly inducible, genetically targeted inactivation of neural and synaptic activity in vivo. Current Opinion in Neurobiology, 17 (5). 581-586 .

Thirumalai, V., Cline, H. T. (March 2008) A commanding control of behavior. Nat Neurosci, 11 (3). pp. 246-8.

Tsigankov, D., Koulakov, A. A. (December 2010) Sperry versus Hebb: topographic mapping in Isl2/EphA3 mutant mice. BMC Neurosci, 11. p. 155. ISSN 1471-2202 (Electronic) 1471-2202 (Linking)

U

Uchida, N., Mainen, Z. F. (2007) Odor concentration invariance by chemical ratio coding. Front Syst Neurosci, 1. p. 3.

Ulloa, L., Diezguerra, F. J., Avila, J., Diaznido, J. (July 1994) Localization of Differentially Phosphorylated Isoforms of Microtubule-Associated Protein 1b in Cultured Rat Hippocampal-Neurons. Neuroscience, 61 (2). pp. 211-223. ISSN 0306-4522

Urai, Anne E, Doiron, Brent, Leifer, Andrew M, Churchland, Anne K (January 2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience. ISSN 1097-6256

V

Van Aelst, L., Caroni, P. (August 2010) Signaling mechanisms. Curr Opin Neurobiol, 20. pp. 1-3. ISSN 1873-6882 (Electronic) 0959-4388 (Linking)

Vass, K., Berger, M. L., Nowak, T. S., Welch, W. J., Lassmann, H. (May 1989) Induction of Stress Protein Hsp70 in Nerve-Cells after Status Epilepticus in the Rat. Neuroscience Letters, 100 (1-3). pp. 259-264. ISSN 0304-3940

Venkatasubramani, J.P., Subramanyam, P., Pal, R., Reddy, B.K., Srinivasan, D.J., Chattarji, S., Iossifov, I., Klann, E., Bhattacharya, S. (March 2020) N-terminal Variant Asp14Asn of the Human p70 S6 Kinase 1 Enhances Translational Signaling Causing Different Effects in Developing and Mature Neuronal Cells. Neurobiology of Learning and Memory, 171 (107203). ISSN 1074-7427

Verechtchaguina, T., Schimansky-Geier, L., Sokolov, I. M. (September 2004) Spectra and waiting-time densities in firing resonant and nonresonant neurons. Phys Rev E Stat Nonlin Soft Matter Phys, 70 (3 Pt 1). 031916. ISSN 1539-3755 (Print)1539-3755 (Linking)

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (March 2006) First passage time densities in non-Markovian models with subthreshold oscillations. Europhysics Letters, 73 (5). pp. 691-697. ISSN 0295-5075

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (March 2006) First passage time densities in resonate-and-fire models. Phys Rev E Stat Nonlin Soft Matter Phys, 73 (3 Pt 1). 031108. ISSN 1539-3755 (Print)1539-3755 (Linking)

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (May 2007) Interspike interval densities of resonate and fire neurons. Biosystems, 89 (1-3). pp. 63-8. ISSN 0303-2647 (Print)0303-2647 (Linking)

Vestin, A., Mills, A. A. (October 2013) The tumor suppressor Chd5 is induced during neuronal differentiation, in the developing mouse brain. Gene Expression Patterns, 13 (8). pp. 482-489. ISSN 1872-7298 (Electronic)1567-133X (Linking)

W

Wang, X., Tucciarone, J., Jiang, S., Yin, F., Wang, B. S., Wang, D., Jia, Y., Jia, X., Li, Y., Yang, T., Xu, Z., Akram, M. A., Wang, Y., Zeng, S., Ascoli, G. A., Mitra, P., Gong, H., Luo, Q., Huang, Z. J. (March 2019) Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Rep, 26 (11). 3145-3159.e5.

Warren, D. J., Koulakov, A. A., Normann, R. A. (September 2004) Spatiotemporal encoding of a bar's direction of motion by neural ensembles in cat primary visual cortex. Annals of Biomedical Engineering, 32 (9). pp. 1265-1275. ISSN 0090-6964

Watabe-Uchida, M., Govek, E. E., Van Aelst, L. (October 2006) Regulators of Rho GTPases in neuronal development. J Neurosci, 26 (42). pp. 10633-5. ISSN 1529-2401 (Electronic)

Watabe-Uchida, M., John, K. A., Janas, J. A., Newey, S. E., Van Aelst, L. (September 2006) The Rac activator DOCK7 regulates neuronal polarity through local phosphorylation of stathmin/Op18. Neuron, 51 (6). pp. 727-39. ISSN 0896-6273 (Print)

Wehr, M., Zador, A. M. (November 2003) Balanced inhibition underlies tuning and sharpens spike timing in auditory cortex. Nature, 426 (6965). pp. 442-6. ISSN 1476-4687 (Electronic)

Wei, W., Nguyen, L. N., Kessels, H. W., Hagiwara, H., Sisodia, S., Malinow, R. (February 2010) Amyloid beta from axons and dendrites reduces local spine number and plasticity. Nature Neuroscience, 13 (2). 190-U71. ISSN 1097-6256

Werner, Jonathan M, Gillis, Jesse (October 2023) Preservation of co-expression defines the primary tissue fidelity of human neural organoids. bioRxiv. (Submitted)

Wilbrecht, L., Holtmaat, A., Wright, N., Fox, K., Svoboda, K. (April 2010) Structural plasticity underlies experience-dependent functional plasticity of cortical circuits. J Neurosci, 30 (14). pp. 4927-4932. ISSN 1529-2401 (Electronic) 0270-6474 (Linking)

Wilbrecht, L., Kirn, J. R. (June 2004) Neuron addition and loss in the song system: regulation and function. Documentation. NY Academy of Sciences.

Wilbrecht, L., Williams, H., Gangadhar, N., Nottebohm, F. (September 2006) High levels of new neuron addition persist when the sensitive period for song learning is experimentally prolonged. Journal of Neuroscience, 26 (36). pp. 9135-9141. ISSN 02706474

Williams, R. W., Dubnau, J. T., Enoch, M. A., Flaherty, L., Sluyter, F., Gannon, K. S., Maxson, S. C., Riedl, C. A. L., Williams, K. D., Holmes, A., Bolivar, V. J., Crusio, W. E. (May 2002) Hot topics in behavioral and neural genetics. Genes Brain and Behavior, 1 (2). pp. 117-130. ISSN 1601-1848

Wilson, R. I., Mainen, Z. F. (July 2006) Early events in olfactory processing. Annu Rev Neurosci, 29. pp. 163-201. ISSN 0147-006X (Print)

Wilson, R. I., Turner, G. C., Laurent, G. (2004) Transformation of Olfactory Representations in the Drosophila Antennal Lobe. Science, 303 (5656). pp. 366-370. ISSN 00368075 (ISSN)

Womelsdorf, T., Fries, P., Mitra, P. P., Desimone, R. (2006) Gamma-band synchronization in visual cortex predicts speed of change detection. Nature, 439 (7077). pp. 733-736. ISSN 00280836

Wood, L., Gray, N. W., Zhou, Z. L., Greenberg, M. E., Shepherd, G. M. G. (October 2009) Synaptic Circuit Abnormalities of Motor-Frontal Layer 2/3 Pyramidal Neurons in an RNA Interference Model of Methyl-CpG-Binding Protein 2 Deficiency. J Neurosci, 29 (40). pp. 12440-12448. ISSN 0270-6474

Wright, N. J., Zhong, Y. (February 1995) Characterization of K+ currents and the cAMP-dependent modulation in cultured Drosophila mushroom body neurons identified by lacZ expression. J Neurosci, 15 (2). pp. 1025-34. ISSN 0270-6474 (Print)

Wu, C. H., Xia, S, Fu, T. F., Wang, H., Chen, Y. H., Leong, D., Chiang, A. S., Tully, T. (December 2007) Specific requirement of NMDA receptors for long-term memory consolidation in Drosophila ellipsoid body. Nat Neurosci, 10 (12). pp. 1578-1586.

Wu, C. L., Shih, M. F. M., Lai, J. S. Y., Yang, H. T., Turner, G. C., Chen, L. Y., Chiang, A. S. (December 2010) Heterotypic gap junctions between two mushroom body modulatory neurons are essential for Drosophila memory formation. Journal of Neurogenetics, 24. pp. 20-21. ISSN 0167-7063

Wu, G. Y., Cline, H. T. (January 1998) Stabilization of dendritic arbor structure in vivo by CaMKII. Science, 279 (5348). pp. 222-6. ISSN 0036-8075 (Print)

Wu, G. Y., Zou, D. J., Koothan, T., Cline, H. T. (April 1995) Infection of frog neurons with vaccinia virus permits in vivo expression of foreign proteins. Neuron, 14 (4). pp. 681-4. ISSN 0896-6273 (Print)

Wu, G. Y., Zou, D. J., Rajan, I., Cline, H. (June 1999) Dendritic dynamics in vivo change during neuronal maturation. Journal of Neuroscience, 19 (11). pp. 4472-83. ISSN 1529-2401 (Electronic)

Wu, G.-Y., Malinow, R., Cline, H. T. (November 1996) Maturation of a central glutamatergic synapse. Science, 274 (5289). pp. 972-6. ISSN 0036-8075 (Print)

Wu, Melody V., Tollkuhn, Jessica (July 2017) Estrogen receptor alpha is required in GABAergic, but not glutamatergic, neurons to masculinize behavior. Hormones and Behavior, 95. pp. 3-12. ISSN 0018-506X

Wu, Yuan-Ting, Bennett, Hannah, Chon, URee, Vanselow, Daniel, Zhang, Qingguang, Munoz-Castaneda, Rodrigo, Cheng, Keith, Osten, Pavel, Drew, Patrick, Kim, Yongsoo (2022) Quantitative relationship between the cerebrovascular network and neuronal cell types in mice. In: BRAIN and BRAIN-PET 2022.

X

Xiao, Yun, Donghwi, Kim, Stanacevic, M., Mainen, Z. F. (2007) Low-Power High-Resolution 32-channel Neural Recording System. Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1. pp. 2373-2376.

Xie, Yunyao, Huang, Longwen, Corona, Alberto, Pagliaro, Alexa H, Shea, Stephen D (December 2022) A dopaminergic reward prediction error signal shapes maternal behavior in mice. Neuron. S0896-6273(22)01073. ISSN 0896-6273

Xiong, H. B., Yamada, K., Han, D. K., Nabeshima, T., Enikolopov, G., Carnahan, J., Nawa, H. (May 1999) Mutual regulation between the intercellular messengers nitric oxide and brain-derived neurotrophic factor in rodent neocortical neurons. European Journal of Neuroscience, 11 (5). pp. 1567-1576. ISSN 0953-816X

Y

Yan, H., Li, B., Wang, J. (April 2019) Non-equilibrium landscape and flux reveal how the central amygdala circuit gates passive and active defensive responses. J R Soc Interface, 16 (153). p. 20180756. ISSN 1742-5662

Yang, Y., DeWeese, M. R., Otazu, G. H., Zador, A. M. (November 2008) Millisecond-scale differences in neural activity in auditory cortex can drive decisions. Nat Neurosci, 11 (11). pp. 1262-3. ISSN 1546-1726 (Electronic)

Yang, Y. T., Wang, C. L., Van Aelst, L. (August 2012) DOCK7 interacts with TACC3 to regulate interkinetic nuclear migration and cortical neurogenesis. Nature Neuroscience, 15 (9). pp. 1201-10. ISSN 1097-6256

Yang, Z., Jiang, H., Zhao, F., Shankar, D. B., Sakamoto, K. M., Zhang, M. Q., Lin, S. (August 2007) A highly conserved regulatory element controls hematopoietic expression of GATA-2 in zebrafish. Bmc Developmental Biology, 7. p. 97. ISSN 1471-213X

Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S, Aldridge, Andrew I, Ament, Seth A, Bartlett, Anna, Behrens, M Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L, Doyle, Wayne I, Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R, Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D, Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M, Nery, Joseph R, Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K, Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C, Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R, van Velthoven, Cindy, Wang, Xinxin, White, Owen R, Huang, Z Josh, Kharchenko, Peter V, Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D, Gillis, Jesse, Macosko, Evan Z, Ren, Bing, Ecker, Joseph R, Zeng, Hongkui, Mukamel, Eran A (October 2021) A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature, 598 (7879). pp. 103-110. ISSN 0028-0836

Yoles-Frenkel, Michal, Shea, Stephen D, Davison, Ian G, Ben-Shaul, Yoram (August 2022) The Bruce effect: Representational stability and memory formation in the accessory olfactory bulb of the female mouse. Cell Reports, 40 (8). p. 111262. ISSN 2211-1247

Yuan, Li, Chen, Xiaoyin, Zhan, Huiqing, Gilbert, Henry L, Zador, Anthony M (February 2023) Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq. bioRxiv. (Submitted)

Z

Zador, A. M. (1998) Impact of synaptic unreliability on the information transmitted by spiking neurons. Journal of Neurophysiology, 79 (3). pp. 1219-1229. ISSN 00223077 (ISSN)

Zador, A. M., Dubnau, J., Oyibo, H. K., Zhan, H., Cao, G., Peikon, I. D. (October 2012) Sequencing the Connectome. PLoS Biology, 10 (10). ISSN 1544-9173

Zador, A. M., Mombaerts, P. (August 2007) Neuronal circuitry and population activity. Current Opinion in Neurobiology, 17 (4). pp. 395-6. ISSN 0959-4388 (Print)

Zador, A. M., Pearlmutter, B. A. (1996) VC dimension of an integrate-and-fire neuron model. In: Proceedings of the 9th Annual Conference on Computational Learning Theory.

Zeisel, A., Hochgerner, H., Lönnerberg, P., Johnsson, A., Memic, F., van der Zwan, J., Häring, M., Braun, E., Borm, L. E., La Manno, G., Codeluppi, S., Furlan, A., Lee, K., Skene, N., Harris, K. D., Hjerling-Leffler, J., Arenas, E., Ernfors, P., Marklund, U., Linnarsson, S. (August 2018) Molecular Architecture of the Mouse Nervous System. Cell. ISSN 00928674 (ISSN)

Zeisler, Zachary R, London, Liza, Janssen, William G, Fredericks, J Megan, Elorette, Catherine, Fujimoto, Atsushi, Zhan, Huiqing, Russ, Brian E, Clem, Roger L, Hof, Patrick R, Stoll, Frederic M, Rudebeck, Peter H (October 2023) Single basolateral amygdala neurons in macaques exhibit distinct connectional motifs with frontal cortex. Neuron, 111 (20). 3307-3320.e5. ISSN 0896-6273

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas A, Gieselmann, Marc A, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana A (April 2023) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. Nature Communications, 14 (1). p. 1858. ISSN 2041-1723

Zhang, Anqi, Zador, Anthony M (December 2023) Neurons in the primary visual cortex of freely moving rats encode both sensory and non-sensory task variables. PLoS Biology, 21 (12). e3002384. ISSN 1545-7885

Zhong, H., Sia, G.-M., Sato, T. R., Gray, N. W., Mao, T., Khuchua, Z., Huganir, R. L., Svoboda, K. (May 2009) Subcellular Dynamics of Type II PKA in Neurons. Neuron, 62 (3). pp. 363-374.

Zhong, Y. (June 1995) Mediation of PACAP-like neuropeptide transmission by coactivation of Ras/Raf and cAMP signal transduction pathways in Drosophila. Nature, 375 (6532). pp. 588-92. ISSN 0028-0836 (Print)

Zhong, Y., Pena, L. A. (March 1995) A novel synaptic transmission mediated by a PACAP-like neuropeptide in Drosophila. Neuron, 14 (3). pp. 527-36. ISSN 0896-6273 (Print)

Zhong, Y., Shanley, J. (October 1995) Altered nerve terminal arborization and synaptic transmission in Drosophila mutants of cell adhesion molecule fasciclin I. J Neurosci, 15 (10). pp. 6679-87. ISSN 0270-6474 (Print)

Zhong, Y., Wu, C. F. (February 2004) Neuronal activity and adenylyl cyclase in environment-dependent plasticity of axonal outgrowth in Drosophila. Journal of Neuroscience, 24 (6). pp. 1439-1445. ISSN 0270-6474

Zipser, B. (1980) Identification of Specific Leech Neurons Immuno Reactive to Enkephalin. Nature (London), 283 (5750). pp. 857-858.

Zito, K. (January 2003) The flip side of synapse elimination. Neuron, 37 (1). pp. 1-2. ISSN 0896-6273 (Print)

Zito, K., Murthy, V. N. (January 2002) Dendritic spines. Current Biology, 12 (1). R5-R5. ISSN 0960-9822

This list was generated on Mon Mar 18 21:33:14 2024 EDT.
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