Additional materials of the author atCSHL Institutional Repository
Robert Martienssen publications
Shi, Hai, Ernst, Evan, Heinzel, Nicolas, McCorkle, Sean, Rolletschek, Hardy, Borisjuk, Ljudmilla, Ortleb, Stefan, Martienssen, Robert, Shanklin, John , Schwender, Jorg (2023) Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis. BMC Plant Biology, 23(1) pp. 458.
Girish, Vishruth, Lakhani, Asad A, Thompson, Sarah L, Scaduto, Christine M, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Kandikuppa, Pranav K, Lukow, Devon A, Yuan, Monet Lou, Stevens, Eric C, Lee, Sophia N, Schukken, Klaske M, Akalu, Saron M, Vasudevan, Anand, Zou, Charles, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping , Sheltzer, Jason M (2023) Oncogene-like addiction to aneuploidy in human cancers. Science, 381(6660) pp. eadg4521.
Lee, Seung Cho, Adams, Dexter W, Ipsaro, Jonathan J, Cahn, Jonathan, Lynn, Jason, Kim, Hyun-Soo, Berube, Benjamin, Major, Viktoria, Calarco, Joseph P, LeBlanc, Chantal, Bhattacharjee, Sonali, Ramu, Umamaheswari, Grimanelli, Daniel, Jacob, Yannick, Voigt, Philipp, Joshua-Tor, Leemor , Martienssen, Robert A (2023) Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation. Cell, 186(19) pp. 4100-4116.e15.
Stevenson, Dennis Wm, Ramakrishnan, Srividya, Alves, Cristiane de Santis, Coelho, Laís Araujo, Kramer, Melissa, Goodwin, Sara, Ramos, Olivia Mendevil, Eshel, Gil, Sondervan, Veronica M, Frangos, Samantha, Zumajo-Cardona, Cecilia, Jenike, Katherine, Ou, Shujun, Wang, Xiaojin, Lee, Yin Peng, Loke, Stella, Rossetto, Maurizio, McPherson, Hannah, Nigris, Sebastiano, Moschin, Silvia, Little, Damon P, Katari, Manpreet S, Varala, Kranthi, Kolokotronis, Sergios-Orestis, Ambrose, Barbara, Croft, Larry J, Coruzzi, Gloria M, Schatz, Michael, McCombie, W Richard , Martienssen, Robert A (2023) The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity. bioRxiv,
Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry , Martienssen, Robert A (2023) Teosinte Pollen Drive guides maize domestication and evolution by RNAi. bioRxiv,
Herridge, Rowan P, Dolata, Jakub, Migliori, Valentina, de Santis Alves, Cristiane, Borges, Filipe, Van Ex, Frédéric, Lin, Ann, Bajczyk, Mateusz, Leonardi, Tommaso, Hendrick, Alan, Schorn, Andrea J, Kouzarides, Tony , Martienssen, Robert A (2023) Pseudouridine guides germline small RNA transport and epigenetic inheritance. bioRxiv,
Shimada, Atsushi, Cahn, Jonathan, Ernst, Evan, Lynn, Jason, Grimanelli, Daniel, Henderson, Ian, Kakutani, Tetsuji , Martienssen, Robert A (2023) Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs.
Lee, Seung Cho, Adams, Dexter W, Ipsaro, Jonathan J, Cahn, Jonathan, Lynn, Jason, Kim, Hyun-Soo, Berube, Benjamin, Major, Viktoria, Calarco, Joseph P, LeBlanc, Chantal, Bhattacharjee, Sonali, Ramu, Umamaheswari, Grimanelli, Daniel, Jacob, Yannick, Voigt, Philipp, Joshua-Tor, Leemor , Martienssen, Robert A (2023) Chromatin remodeling of histone H3 variants underlies epigenetic inheritance of DNA methylation. bioRxiv,
Mateo-Elizalde, Cristian, Lynn, Jason, Ernst, Evan , Martienssen, Rob (2023) Duckweeds. Current Biology, 33(3) pp. R89-R91.
Girish, Vishruth, Lakhani, Asad A, Scaduto, Christine M, Thompson, Sarah L, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Lukow, Devon A, Yuan, Monet Lou, Kandikuppa, Pranav K, Stevens, Eric C, Lee, Sophia N, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping , Sheltzer, Jason M (2023) Oncogene-like addiction to aneuploidy in human cancers. bioRxiv,
Liang, Yuanxue, Yu, Xiao‐Hong, Anaokar, Sanket, Shi, Hai, Dahl, William B, Cai, Yingqi, Luo, Guangbin, Chai, Jin, Cai, Yuanheng, Mollá‐Morales, Almudena, Altpeter, Fredy, Ernst, Evan, Schwender, Jorg, Martienssen, Robert A , Shanklin, John (2022) Engineering Triacylglycerol Accumulation in Duckweed (Lemna japonica). Plant Biotechnology Journal,
Aubert, Juliette, Bellegarde, Fanny, Oltehua-Lopez, Omar, Leblanc, Olivier, Arteaga-Vazquez, Mario A, Martienssen, Robert A , Grimanelli, Daniel (2022) AGO104 is a RdDM effector of paramutation at the maize b1 locus. Lukens, Lewis (Ed.). PLoS One, 17(8) pp. e0273695-e0273695.
Gutbrod, MJ, Roche, B, Steinberg, JI, Lakhani, AA, Chang, K, Schorn, AJ , Martienssen, RA (2022) Dicer promotes genome stability via the bromodomain transcriptional co-activator BRD4. Nature Communications, 13(1) pp. 1001.
Naish, Matthew, Alonge, Michael, Wlodzimierz, Piotr, Tock, Andrew J, Abramson, Bradley W, Schmücker, Anna, Mandáková, Terezie, Jamge, Bhagyshree, Lambing, Christophe, Kuo, Pallas, Yelina, Natasha, Hartwick, Nolan, Colt, Kelly, Smith, Lisa M, Ton, Jurriaan, Kakutani, Tetsuji, Martienssen, Robert A, Schneeberger, Korbinian, Lysak, Martin A, Berger, Frédéric, Bousios, Alexandros, Michael, Todd P, Schatz, Michael C , Henderson, Ian R (2021) The genetic and epigenetic landscape of the Arabidopsis centromeres. Science, 374(6569) pp. eabi7489.
Lee, Seung Cho , Martienssen, Robert A (2021) Regulation of retrotransposition in Arabidopsis.. Biochemical Society Transactions,
Parent, Jean-Sébastien, Cahn, Jonathan, Herridge, Rowan P, Grimanelli, Daniel , Martienssen, Robert A (2021) Small RNAs guide histone methylation in Arabidopsis embryos. Genes and Development,
Mo, Ziyi, Scheben, Armin, Steinberg, Joshua, Siepel, Adam , Martienssen, Robert (2021) Circadian immunity, sunrise time and the seasonality of respiratory infections.. medRxiv,
Khouider, Souraya, Borges, Filipe, LeBlanc, Chantal, Ungru, Alexander, Schnittger, Arp, Martienssen, Robert, Colot, Vincent , Bouyer, Daniel (2021) Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications, 12(1) pp. 410.
Lee, Seung Cho , Martienssen, Robert A (2021) Phase separation in plant miRNA processing.. Nature Cell Biology, 23(1) pp. 5-6.
Michael, Todd P, Ernst, Evan, Hartwick, Nolan, Chu, Philomena, Bryant, Douglas, Gilbert, Sarah, Ortleb, Stefan, Baggs, Erin L, Sree, K Sowjanya, Appenroth, Klaus J, Fuchs, Joerg, Jupe, Florian, Sandoval, Justin P, Krasileva, Ksenia V, Borisjuk, Ljudmylla, Mockler, Todd C, Ecker, Joseph R, Martienssen, Robert A , Lam, Eric (2020) Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Research, 31(2) pp. 225-238.
Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdžić, M., Berube, B., Brooks, A., Thompson, W. F., Hanley-Bowdoin, L. , Martienssen, R. A. (2020) Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. Curr Biol, 31(3) pp. 591-600.
Wear, Emily E, Song, Jawon, Zynda, Gregory J, Mickelson-Young, Leigh, LeBlanc, Chantal, Lee, Tae-Jin, Deppong, David O, Allen, George C, Martienssen, Robert A, Vaughn, Matthew W, Hanley-Bowdoin, Linda , Thompson, William F (2020) Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots.. PLoS Genetics, 16(10) pp. e1008623.
Parent, J. S., Borges, F., Shimada, A. , Martienssen, R. A. (2020) Small RNA Function in Plants: From Chromatin to the Next Generation. Cold Spring Harbor Symposia on Quantitative Biology,
Borg, M, Jacob, Y., Susaki, D., LeBlanc, C., Buendia, D, Axelsson, E., Kawashima, T., Voigt, P., Boavida, L. C., Becker, J. D., Higashiyama, T., Martienssen, R. A. , Berger, F. (2020) Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology, 22(6) pp. 621. Nature.
Gutbrod, M. J. , Martienssen, R. A. (2020) Conserved chromosomal functions of RNA interference. Nat Rev Genet, 21(5) pp. 311-331.
Lee, S.C., Ernst, E., Berube, B., Borges, F., Parent, J. S., Ledon, P., Schorn, A. , Martienssen, R. A. (2020) Arabidopsis Retrotransposon Virus-Like Particles and Their Regulation by Epigenetically Activated Small RNA. Genome Research, 30(4) pp. 576-588.
Wang, Zhenxing, Butel, Nicolas, Santos-González, Juan, Borges, Filipe, Yi, Jun, Martienssen, Robert A, Martinez, German , Köhler, Claudia (2020) Polymerase IV Plays a Crucial Role in Pollen Development in Capsella.. The Plant Cell, 32(4) pp. 950-966.
Wang, L., Lu, Z., Delabastide, M., Van Buren, P., Wang, X., Ghiban, C., Regulski, M., Drenkow, J., Xu, X., Ortiz-Ramirez, C., Marco, C.F., Goodwin, S., Dobin, A., Birnbaum, K. D., Jackson, D. P., Martienssen, R. A., McCombie, W. R., Micklos, D. A., Schatz, M. C., Ware, D. H. , Gingeras, T. R. (2020) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. Frontiers in Plant Science, 11(289)
Wheeler, E., Brooks, A.M., Concia, L., Vera, D., Wear, E. E., LeBlanc, C., Ramu, U., Vaughn, M. W., Bass, H., Martienssen, R. A., Thompson, W.F. , Hanley-Bowdoin, L. (2020) Arabidopsis DNA Replication Initiates in Intergenic, AT-rich Open Chromatin. Plant Physiology,
Wang, Liya, Lu, Zhenyuan, delaBastide, Melissa, Van Buren, Peter, Wang, Xiaofei, Ghiban, Cornel, Regulski, Michael, Drenkow, Jorg, Xu, Xiaosa, Ortiz-Ramirez, Carlos, Fernandez-Marco, Cristina, Goodwin, Sara, Dobin, Alexander, Birnbaum, Kenneth, Jackson, David, Martienssen, Robert, McCombie, William, Micklos, David, Schatz, Michael, Ware, Doreen , Gingeras, Thomas (2019) Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. BioRxiv,
Bhattacharjee, S., Roche, B. , Martienssen, R. A. (2019) RNA-induced initiation of transcriptional silencing (RITS) complex structure and function. RNA Biol, 16(9) pp. 1133-1146.
Schorn, A. J. , Martienssen, R. (2019) Getting in LINE with Replication. Molecular Cell, 74(3) pp. 415-417.
Schorn, A. J. , Martienssen, R. A. (2018) Tie-Break: Host and Retrotransposons Play tRNA. Trends in Cell Biology, 28(10) pp. 793-806.
Ikeda, Y., Nishihama, R., Yamaoka, S., Arteaga-Vazquez, M. A., Aguilar-Cruz, A., Grimanelli, D., Pogorelcnik, R., Martienssen, R. A., Yamato, K. T., Kohchi, T., Hirayama, T. , Mathieu, O. (2018) Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation. Plant Cell Physiol, 59(12) pp. 2421-2431.
Choi, K., Zhao, X., Tock, A. J., Lambing, C., Underwood, C. J., Hardcastle, T. J., Serra, H., Kim, J., Cho, H. S., Kim, J., Ziolkowski, P. A., Yelina, N. E., Hwang, I., Martienssen, R. A. , Henderson, I. R. (2018) Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions. Genome Res, 28(4) pp. 532-546.
Underwood, C. J., Choi, K., Lambing, C., Zhao, X., Serra, H., Borges, F., Simorowski, J., Ernst, E., Jacob, Y., Henderson, I. R. , Martienssen, R. A. (2018) Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation. Genome Res, 28(4) pp. 519-531.
Concia, L., Brooks, A. M., Wheeler, E., Zynda, G. J., Wear, E. E., LeBlanc, C., Song, J., Lee, T. J., Pascuzzi, P. E., Martienssen, R. A., Vaughn, M. W., Thompson, W. F. , Hanley-Bowdoin, L. (2018) Genome-Wide Analysis of the Arabidopsis Replication Timing Program. Plant Physiol, 176(3) pp. 2166-2185.
Borges, F., Parent, J. S., van Ex, F., Wolff, P., Martinez, G., Kohler, C. , Martienssen, R. A. (2018) Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis. Nat Genet, 50(2) pp. 186-192.
He, H., Li, Y., Dong, Q., Chang, A. Y., Gao, F., Chi, Z., Su, M., Zhang, F., Ban, H., Martienssen, R., Chen, Y. H. , Li, F. (2017) Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex. Proc Natl Acad Sci U S A,
Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rovekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y. , Takenaka, M. (2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell, 171(2) pp. 287-304.e15.
Roche, B., Arcangioli, B. , Martienssen, R. (2017) New roles for Dicer in the nucleolus and its relevance to cancer. Cell Cycle, 16(18) pp. 1643-1653.
Chomet, Paul , Martienssen, Rob (2017) Barbara McClintock’s Final Years as Nobelist and Mentor: A Memoir. Cell, 170(6) pp. 1049-1054.
Wear, E. E., Song, J., Zynda, G., LeBlanc, C., Lee, T. J., Mickelson-Young, L., Concia, L., Mulvaney, P., Szymanski, E. S., Allen, G. C., Martienssen, R., Vaughn, M. W., Hanley-Bowdoin, L. , Thompson, W. (2017) Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays L.) root tips. Plant Cell, 29(9) pp. 2126-49.
Roche, B., Arcangioli, B. , Martienssen, R. A. (2017) Transcriptional reprogramming in cellular quiescence. RNA Biol, 14(7) pp. 843-853.
Schorn, A. J., Gutbrod, M. J., LeBlanc, C. , Martienssen, R. (2017) LTR-Retrotransposon Control by tRNA-Derived Small RNAs. Cell, 170(1) pp. 61-71.
Chang, An-Yun, Castel, Stephane E., Ernst, Evan, Kim, Hyun Soo , Martienssen, Robert A. (2017) The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports, 19(12) pp. 2477-2489.
Underwood, Charles J., Henderson, Ian R. , Martienssen, Robert A. (2017) Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology, 36 pp. 135-141.
Ziolkowski, P. A., Underwood, C. J., Lambing, C., Martinez-Garcia, M., Lawrence, E. J., Ziolkowska, L., Griffin, C., Choi, K., Franklin, F. C., Martienssen, R. A. , Henderson, I. R. (2017) Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination. Genes Dev, 31(3) pp. 306-317.
Ingouff, M., Selles, B., Michaud, C., Vu, T. M., Berger, F., Schorn, A. J., Autran, D., Van Durme, M., Nowack, M. K., Martienssen, R. A. , Grimanelli, D. (2017) Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM. Genes and Development, 31(1) pp. 72-83.
Roche, B., Arcangioli, B. , Martienssen, R. A. (2016) RNA interference is essential for cellular quiescence. Science, 354(6313)
Fransz, P., Linc, G., Lee, C. R., Aflitos, S. A., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., de Jong, H. , Schranz, M. E. (2016) Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J, 88(2) pp. 159-178.
Quadrana, L., Bortolini Silveira, A., Mayhew, G. F., LeBlanc, C., Martienssen, R. A., Jeddeloh, J. A. , Colot, V. (2016) The Arabidopsis thaliana mobilome and its impact at the species level. Elife, 5
Pichugina, T., Sugawara, T., Kaykov, A., Schierding, W., Masuda, K., Uewaki, J., Grand, R. S., Allison, J. R., Martienssen, R. A., Nurse, P., Ueno, M. , O'Sullivan, J. M. (2016) A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Sci Rep, 6 pp. 18757.
Borges, F. , Martienssen, R. A. (2015) The expanding world of small RNAs in plants. Nat Rev Mol Cell Biol, 16 pp. 727-741.
Ong-Abdullah, M., Ordway, J. M., Jiang, N., Ooi, S. E., Kok, S. Y., Sarpan, N., Azimi, N., Hashim, A. T., Ishak, Z., Rosli, S. K., Malike, F. A., Bakar, N. A., Marjuni, M., Abdullah, N., Yaakub, Z., Amiruddin, M. D., Nookiah, R., Singh, R., Low, E. L., Chan, K. L., Azizi, N., Smith, S. W., Bacher, B., Budiman, M. A., Van Brunt, A., Wischmeyer, C., Beil, M., Hogan, M., Lakey, N., Lim, C. C., Arulandoo, X., Wong, C. K., Choo, C. N., Wong, W. C., Kwan, Y. Y., Alwee, S. S., Sambanthamurthi, R. , Martienssen, R. A. (2015) Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature, 525 pp. 533-537.
Martienssen, R. , Moazed, D. (2015) RNAi and Heterochromatin Assembly. Cold Spring Harb Perspect Biol, 7(8)
Ren, J., Castel, S. E. , Martienssen, R. A. (2015) Dicer in action at replication-transcription collisions. Mol Cell Oncol, 2(3) pp. e991224.
Li, Y., Mukherjee, I., Thum, K. E., Tanurdzic, M., Katari, M. S., Obertello, M., Edwards, M. B., McCombie, W. R., Martienssen, R. A. , Coruzzi, G. M. (2015) The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology, 16(1) pp. 79.
Underwood, C. J. , Martienssen, R. A. (2015) Argonautes team up to silence transposable elements in Arabidopsis. Embo Journal, 34(5) pp. 579-580.
Canto-Pastor, A., Molla-Morales, A., Ernst, E., Dahl, W., Zhai, J., Yan, Y., Meyers, B. C., Shanklin, J. , Martienssen, R. (2015) Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biol (Stuttg), 17(s1) pp. 59-65.
Castel, Stephane E, Ren, Jie, Bhattacharjee, Sonali, Chang, An-Yun, Sánchez, Mar, Valbuena, Alberto, Antequera, Francisco , Martienssen, Robert A (2014) Dicer Promotes Transcription Termination at Sites of Replication Stress to Maintain Genome Stability. Cell, 159(3) pp. 572-583.
Grand, R. S., Pichugina, T., Gehlen, L. R., Jones, M. B., Tsai, P., Allison, J. R., Martienssen, R. , O'Sullivan, J. M. (2014) Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure. Nucleic Acids Research, 42(20) pp. 12585-12599.
Thiebaut, F., Rojas, C. A., Grativol, C., Motta, M. R., Vieira, T., Regulski, M., Martienssen, R. A., Farinelli, L., Hemerly, A. S. , Ferreira, P. C. G. (2014) Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. BMC Genomics, 15 pp. 766.
Grativol, C., Regulski, M., Bertalan, M., McCombie, W. R., da Silva, F. R., Zerlotini Neto, A., Vicentini, R., Farinelli, L., Hemerly, A. S., Martienssen, R. A. , Ferreira, P. C. G. (2014) Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum. Plant Journal, 79(1) pp. 162-172.
Singh, R., Low, E. T., Ooi, L. C., Ong-Abdullah, M., Nookiah, R., Ting, N. C., Marjuni, M., Chan, P. L., Ithnin, M., Manaf, M. A., Nagappan, J., Chan, K. L., Rosli, R., Halim, M. A., Azizi, N., Budiman, M. A., Lakey, N., Bacher, B., Van Brunt, A., Wang, C., Hogan, M., He, D., MacDonald, J. D., Smith, S. W., Ordway, J. M., Martienssen, R. A. , Sambanthamurthi, R. (2014) The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications, 5 pp. 4106.
Grand, R. S., Martienssen, R. , O'Sullivan, J. M. (2014) Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe. Mitochondrion, 17 pp. 141-9.
Heard, E. , Martienssen, R. A. (2014) Transgenerational Epigenetic Inheritance: Myths and Mechanisms. Cell, 157(1) pp. 95-109.
Creasey, K. M., Zhai, J., Borges, F., Van Ex, F., Regulski, M., Meyers, B. C. , Martienssen, R. A. (2014) miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature, 508(7496) pp. 411-415.
Jacob, Y., Bergamin, E., Donoghue, M. T., Mongeon, V., LeBlanc, C., Voigt, P., Underwood, C. J., Brunzelle, J. S., Michaels, S. D., Reinberg, D., Couture, J. F. , Martienssen, R. A. (2014) Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Science, 343(6176) pp. 1249-53.
Kuscu, C., Zaratiegui, M., Kim, H. S., Wah, D. A., Martienssen, R. A., Schalch, T. , Joshua-Tor, L. (2014) CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing. Proceedings of the National Academy of Sciences of the United States of America, 111(5) pp. 1795-1800.
Thiebaut, F., Grativol, C., Tanurdzic, M., Carnavale-Bottino, M., Vieira, T., Motta, M. R., Rojas, C., Vincentini, R., Chabregas, S. M., Hemerly, A. S., Martienssen, R. A. , Ferreira, P. C. (2014) Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion. PLoS One, 9(4) pp. e93822.
Yan, Yiheng, Candreva, Jason, Shi, Hai, Ernst, Evan, Martienssen, Robert, Schwender, Jorg , Shanklin, John (2013) Survey of the total fatty acid and triacylglycerol composition and content of 30 duckweed species and cloning of a Delta 6-desaturase responsible for the production of gamma-linolenic and stearidonic acids in Lemna gibba. BMC Plant Biology, 13
Singh, R., Low, E. T. L., Ooi, L. C. L., Ong-Abdullah, M., Ting, N. C., Nagappan, J., Nookiah, R., Amiruddin, M. D., Rosli, R., Manaf, M. A. A., Chan, K. L., Halim, M. A., Azizi, N., Lakey, N., Smith, S. W., Budiman, M. A., Hogan, M., Bacher, B., Van Brunt, A., Wang, C., Ordway, J. M., Sambanthamurthi, R. , Martienssen, R. A. (2013) The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature, 500(7462) pp. 340-344.
Singh, R., Ong-Abdullah, M., Low, E. T. L., Manaf, M. A. A., Rosli, R., Nookiah, R., Ooi, L. C. L., Ooi, S. E., Chan, K. L., Halim, M. A., Azizi, N., Nagappan, J., Bacher, B., Lakey, N., Smith, S. W., He, D., Hogan, M., Budiman, M. A., Lee, E. K., Desalle, R., Kudrna, D., Goicoechea, J. L., Wing, R. A., Wilson, R. K., Fulton, R. S., Ordway, J. M., Martienssen, R. A. , Sambanthamurthi, R. (2013) Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature, 500(7462) pp. 335-339.
Vu, T. M., Nakamura, M., Calarco, J. P., Susaki, D., Lim, P. Q., Kinoshita, T., Higashiyama, T., Martienssen, R. A. , Berger, F. (2013) RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development, 140(14) pp. 2953-2960.
Regulski, M., Lu, Z., Kendall, J., Donoghue, M. T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., McCombie, W. R., Tingey, S., Rafalski, A., Hicks, J., Ware, D. , Martienssen, R. (2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research, 23(10) pp. 1651-1662.
Borges, F. , Martienssen, R. A. (2013) Establishing epigenetic variation during genome reprogramming. RNA Biology, 10(4) pp. 490-4.
Castel, S. E. , Martienssen, R. A. (2013) RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet, 14(2) pp. 100-12.
Borges, F., Calarco, J. P. , Martienssen, R. A. (2013) Reprogramming the Epigenome in Arabidopsis Pollen. Cold Spring Harbor Symposia on Quantitative Biology, 77 pp. 1-5.
Holmes, A., Roseaulin, L., Schurra, C., Waxin, H., Lambert, S., Zaratiegui, M., Martienssen, R. A. , Arcangioli, B. (2012) Lsd1 and Lsd2 Control Programmed Replication Fork Pauses and Imprinting in Fission Yeast. Cell Reports, 2(6) pp. 1513-1520.
Martienssen, R. (2012) Reprogramming heterochromatin and its consequences in the germline. Genes & Genetic Systems, 87(6) pp. 371-371.
Paszkowski, J. , Martienssen, R. A. (2012) Cell signaling and gene regulation. Current Opinion in Plant Biology, 15(5) pp. 493-495.
Borges, F., Gardner, R., Lopes, T., Calarco, J. P., Boavida, L. C., Slotkin, R. K., Martienssen, R. A. , Becker, J. D. (2012) FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant methods, 8(1) pp. 44.
Zaratiegui, M. , Martienssen, R. A. (2012) SnapShot: Small RNA-Mediated Epigenetic Modifications. Cell, 151(2) pp. 456-456 e1.
Ren, J. , Martienssen, R. A. (2012) Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny. Embo Journal, 31(15) pp. 3237-8.
Thiebaut, F., Grativol, C., Carnavale-Bottino, M., Rojas, C. A., Tanurdzic, M., Farinelli, L., Martienssen, R. A., Hemerly, A. S. , Ferreira, P. C. (2012) Computational identification and analysis of novel sugarcane microRNAs. BMC genomics, 13 pp. 290.
Han, J. J., Jackson, D. , Martienssen, R. (2012) Pod corn is caused by rearrangement at the Tunicate1 locus. The Plant cell, 24(7) pp. 2733-44.
Berger, F., Cao, X. F., Chandler, V., Dennis, L., Martienssen, R., Meyers, B., Pikaard, C., Peacock, J., Richards, E., Wagner, D., Weigel, D., Colot, V., Deal, R., Dean, C., Ecker, J., Gehring, M., Gong, Z. Z., Gregory, B., Rodrigo, G., Gutierrez-Marcos, J., Hasebe, M., Hwang, I. D., Jacobsen, S., Kakutani, T., Li, J. Y., Michaels, S., Noh, Y. S., Provart, N., Vaughn, M. , Comm, EPIC Planning (2012) Reading the Second Code: Mapping Epigenomes to Understand Plant Growth, Development, and Adaptation to the Environment. The Plant cell, 24(6) pp. 2257-2261.
Jacob, Y. , Martienssen, R. (2012) Molecular biology. All packed up and ready to go.. Science, 336(6087) pp. 1391-1392.
Zaratiegui, M. , Martienssen, R. (2012) The persistence of a silent memory. Nature genetics, 44(2) pp. 118-9.
Calarco, J. P., Borges, F., Donoghue, M, Van Ex, F., Jullien, P. E., Lopes, T., Gardner, R., Berger, F., Feijó, J. A, Becker, J. D. , Martienssen, R. A. (2012) Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA. Cell, 151(1) pp. 194-205.
Calarco, Joseph P. , Martienssen, Robert A. (2012) Imprinting: DNA methyltransferases illuminate reprogramming. Current Biology, 22(21) pp. 929-931.
Stillman, B., Grodzicker, T., Martienssen, R. , Stewart, D. (2012) The Biology of Plants. Stillman, Bruce, Grodzicker, Terri, Martienssen, Rob , Stewart, David (Ed.). Cold Spring Harbor Symposia on Quantitative Biology, 77
Lee, E. K., Cibrian-Jaramillo, A., Kolokotronis, S. O., Katari, M. S., Stamatakis, A., Ott, M., Chiu, J. C., Little, D. P., Stevenson, D. W., McCombie, W. R., Martienssen, R. A., Coruzzi, G. , Desalle, R. (2011) A functional phylogenomic view of the seed plants. PLoS genetics, 7(12) pp. e1002411.
Zaratiegui, M., Castel, S. E., Irvine, D. V., Kloc, A., Ren, J., Li, F., de Castro, E., Marin, L., Chang, A. Y., Goto, D., Cande, W. Z., Antequera, F., Arcangioli, B. , Martienssen, R. A. (2011) RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature, 479(7371) pp. 135-8.
Van Ex, F., Jacob, Y. , Martienssen, R. A. (2011) Multiple roles for small RNAs during plant reproduction. Current opinion in plant biology, 14(5) pp. 588-93.
Volpe, T. , Martienssen, R. A. (2011) RNA interference and heterochromatin assembly. Cold Spring Harbor perspectives in biology, 3(9) pp. a003731.
Li, F., Martienssen, R. A. , Cande, W. Z. (2011) Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature, 475(7355) pp. 244-U2562.
Rhind, N., Chen, Z., Yassour, M., Thompson, D. A., Haas, B. J., Habib, N., Wapinski, I., Roy, S., Lin, M. F., Heiman, D. I., Young, S. K., Furuya, K., Guo, Y., Pidoux, A., Chen, H. M., Robbertse, B., Goldberg, J. M., Aoki, K., Bayne, E. H., Berlin, A. M., Desjardins, C. A., Dobbs, E., Dukaj, L., Fan, L., FitzGerald, M. G., French, C., Gujja, S., Hansen, K., Keifenheim, D., Levin, J. Z., Mosher, R. A., Muller, C. A., Pfiffner, J., Priest, M., Russ, C., Smialowska, A., Swoboda, P., Sykes, S. M., Vaughn, M., Vengrova, S., Yoder, R., Zeng, Q., Allshire, R., Baulcombe, D., Birren, B. W., Brown, W., Ekwall, K., Kellis, M., Leatherwood, J., Levin, H., Margalit, H., Martienssen, R., Nieduszynski, C. A., Spatafora, J. W., Friedman, N., Dalgaard, J. Z., Baumann, P., Niki, H., Regev, A. , Nusbaum, C. (2011) Comparative functional genomics of the fission yeasts. Science, 332(6032) pp. 930-6.
Borges, F., Pereira, P. A., Slotkin, R. K., Martienssen, R. A. , Becker, J. D. (2011) MicroRNA activity in the Arabidopsis male germline. Journal of Experimental Botany, 62(5) pp. 1611-1620.
Calarco, J. P. , Martienssen, R. A. (2011) Genome reprogramming and small interfering RNA in the Arabidopsis germline. Curr Opin Genet Dev, 21(2) pp. 134-9.
Jacob, Y. , Martienssen, R. A. (2011) Chromatin reprogramming: gender equality during Arabidopsis germline differentiation. Current biology, 21(1) pp. R20-2.
Zaratiegui, B. M., Vaughn, M. W., Irvine, D. V., Goto, D., Watt, S., Bahler, J., Arcangioli, B. , Martienssen, R. A. (2011) CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature, 469(7328) pp. 112-5.
Hansen, K. R., Hazan, I., Shanker, S., Watt, S., Verhein-Hansen, J., Bahler, J., Martienssen, R. A., Partridge, J. F., Cohen, A. , Thon, G. (2011) H3K9me-Independent Gene Silencing in Fission Yeast Heterochromatin by Clr5 and Histone Deacetylases. Plos Genetics, 7(1)
Creasey, K. M. , Martienssen, R. A. (2011) Germline Reprogramming of Heterochromatin in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 75 pp. 269-274.
Lee, T. J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., Menges, M., Zheng, P., Main, D., Murray, J. A. H., Sosinski, B., Allen, G. C., Martienssen, R. A., Hanley-Bowdoin, L., Vaughn, M. W. , Thompson, W. F. (2010) Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. Plos Genetics, 6(6) pp. 1-18.
Martienssen, R. (2010) Small RNA Makes Its Move. Science, 328(5980) pp. 834-835.
Martienssen, R. A. (2010) Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. New Phytologist, 186(1) pp. 46-53.
Olmedo-Monfil, V., Durán-Figueroa, N., Arteaga-Vázquez, M., Demesa-Arévalo, E., Autran, D., Grimanelli, D., Slotkin, R. K., Martienssen, R. A. , Vielle-Calzada, J. P. (2010) Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature, 464(7288) pp. 628-632.
Cibrian-Jaramillo, A., De la Torre-Barcena, J. E., Lee, E. K., Katari, M. S., Little, D. P., Stevenson, D. W., Martienssen, R. A., Coruzzi, G. M. , DeSalle, R. (2010) Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution. Genome Biology and Evolution, 2 pp. 225-239.
Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M., Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P. , Vaughn, M. W. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326(5956) pp. 1112-5.
Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J., Lin, J., Kim, H., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K. , Wing, R. A. (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS genetics, 5(11) pp. e1000728.
Schwab, R., Maizel, A., Ruiz-Ferrer, V., Garcia, D., Bayer, M., Crespi, M., Voinnet, O. , Martienssen, R. A. (2009) Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PloS one, 4(6) pp. e5980.
Irvine, D. V., Goto, D. B., Vaughn, M. W., Nakaseko, Y., McCombie, W. R., Yanagida, M. , Martienssen, R. (2009) Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing. Genome research, 19(6) pp. 1077-83.
Slotkin, R. K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J. D., Feijo, J. A. , Martienssen, R. A. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136(3) pp. 461-72.
Cibrian-Jaramillo, A. , Martienssen, R. A. (2009) Darwin's "Abominable Mystery": the role of RNA interference in the evolution of flowering plants. Cold Spring Harbor Symposia on Quantitative Biology, 74 pp. 267-273.
Finigan, P. , Martienssen, R. A. (2008) Nucleolar dominance and DNA methylation directed by small interfering RNA. Molecular Cell, 32(6) pp. 753-4.
Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T. J., Slotkin, R. K., Sosinski, B., Thompson, W. F., Doerge, R. W. , Martienssen, R. A. (2008) Epigenomic consequences of immortalized plant cell suspension culture. PLoS biology, 6(12) pp. 2880-95.
Meyers, B. C., Axtell, M. J., Bartel, B., Bartel, D. P., Baulcombe, D., Bowman, J. L., Cao, X., Carrington, J. C., Chen, X., Green, P. J., Griffiths-Jones, S., Jacobsen, S. E., Mallory, A. C., Martienssen, R. A., Poethig, R. S., Qi, Y., Vaucheret, H., Voinnet, O., Watanabe, Y., Weigel, D. , Zhu, J. K. (2008) Criteria for annotation of plant MicroRNAs. The Plant cell, 20(12) pp. 3186-90.
Masuda, H. P., Cabral, L. M., De Veylder, L., Tanurdzic, M., de Almeida Engler, J., Geelen, D., Inze, D., Martienssen, R. A., Ferreira, P. C. , Hemerly, A. S. (2008) ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO Journal, 27(20) pp. 2746-56.
Li, F., Huarte, M., Zaratiegui, M., Vaughn, M. W., Shi, Y., Martienssen, R. , Cande, W. Z. (2008) Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Cell, 135(2) pp. 272-83.
Kloc, A. , Martienssen, R. (2008) RNAi, heterochromatin and the cell cycle. Trends in genetics, 24(10) pp. 511-7.
Gruntman, E., Qi, Y., Slotkin, R. K., Roeder, T., Martienssen, R. A. , Sachidanandam, R. (2008) Kismeth: analyzer of plant methylation states through bisulfite sequencing. BMC bioinformatics, 9 pp. 371.
Martienssen, R. A. (2008) Great leap forward? Transposable elements, small interfering RNA and adaptive Lamarckian evolution. New Phytologist, 179(3) pp. 570-572.
Kloc, A., Zaratiegui, M., Nora, E. , Martienssen, R. (2008) RNA interference guides histone modification during the S phase of chromosomal replication. Current biology, 18(7) pp. 490-5.
Pinon, V., Etchells, J. P., Rossignol, P., Collier, S. A., Arroyo, J. M., Martienssen, R. A. , Byrne, M. E. (2008) Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development, 135(7) pp. 1315-24.
Weil, C. , Martienssen, R. (2008) Epigenetic interactions between transposons and genes: lessons from plants. Current opinion in genetics & development, 18(2) pp. 188-92.
Jones, P. A., Archer, T. K., Baylin, S. B., Beck, S., Berger, S., Bernstein, B. E., Carpten, J. D., Clark, S. J., Costello, J. F., Doerge, R. W., Esteller, M., Feinberg, A. P., Gingeras, T. R., Greally, J. M., Henikoff, S., Herman, J. G., Jackson-Grusby, L., Jenuwein, T., Jirtle, R. L., Kim, Y. J., Laird, P. W., Lim, B., Martienssen, R., Polyak, K., Stunnenberg, H., Tlsty, T. D., Tycko, B., Ushijima, T., Zhu, J., Pirrotta, V., Allis, C. D., Elgin, S. C., Rine, J. , Wu, C. (2008) Moving AHEAD with an international human epigenome project. Nature, 454(7205) pp. 711-715.
Martienssen, R. A., Kloc, A., Slotkin, R. K. , Tanurdzic, M. (2008) Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor symposia on quantitative biology, 73 pp. 265-71.
Rosin, F. M., Watanabe, N., Cacas, Jean-Luc, Kato, N., Arroyo, J. M., Fang, Y., May, B., Vaughn, M., Simorowski, J., Ramu, U., McCombie, R., Spector, D. L., Martienssen, R. A. , Lam, E. (2008) Genome-wide transposon tagging reveals location-dependent effects on transcription and chromatin organization in Arabidopsis. Plant Journal, 55(3) pp. 514-525.
Ordway, J. M., Budiman, M. A., Korshunova, Y., Maloney, R. K., Bedell, J. A., Citek, R. W., Bacher, B., Peterson, S., Rohlfing, T., Hall, J., Brown, R., Lakey, N., Doerge, R. W., Martienssen, R. A., Leon, J., McPherson, J. D. , Jeddeloh, J. A. (2007) Identification of novel high-frequency DNA methylation changes in breast cancer. PLoS ONE, 2(12) pp. e1314.
Boccara, M., Sarazin, A., Billoud, B., Jolly, V., Martienssen, R., Baulcombe, D. , Colot, V. (2007) New approaches for the analysis of Arabidopsis thaliana small RNAs. Biochimie, 89(10) pp. 1252-6.
Huarte, M., Lan, F., Kim, T. H., Vaughn, M. W., Zaratiegui, B. M., Martienssen, R. A., Buratowski, S. , Shi, Y. (2007) The fission yeast Jmj2 reverses histone H3 lysine 4 trimethylation. Journal of Biological Chemistry, 282(30) pp. 21662-21670.
Vaughn, M. W., Tanurdzic, M., Lippman, Z. B., Jiang, H., Carrasquillo, R., Rabinowicz, P. D., Dedhia, N., McCombie, W. R., Agier, N., Bulski, A., Colot, V., Doerge, R. W. , Martienssen, R. A. (2007) Epigenetic natural variation in Arabidopsis thaliana. PLoS Biology, 5(7) pp. 1617-1629.
Turck, F., Roudier, F., Farrona, S., Martin-Magniette, M. L., Guillaume, E., Buisine, N., Gagnot, S., Martienssen, R. A., Coupland, G. , Colot, V. (2007) Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. Plos Genetics, 3(6) pp. 855-866.
Slotkin, R. Keith , Martienssen, Robert (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet, 8(4) pp. 272-85.
Mukarami, H., Goto, D. B., Toda, T., Chen, E. S., Grewal, S. I., Martienssen, R. A. , Yanagida, M. (2007) Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function. PLoS ONE, 2(3) pp. e317.
Zaratiegui, B. M., Irvine, D. V. , Martienssen, R. A. (2007) Noncoding RNAs and gene silencing. Cell, 128(4) pp. 763-76.
Lan, Fei, Zaratiegui, Mikel, Villen, Judit, Vaughn, Matthew W., Verdel, Andre, Huarte, Maite, Shi, Yujiang, Gygi, Steven P., Moazed, Danesh, Martienssen, Robert A. , Shi, Yang (2007) S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription. Mol Cell, 26(1) pp. 89-8101.
Martienssen, R., Zaratiegui, M., Irvine, D., Goto, D., Slotkin, K., Tanurdzic, M., Lippman, Z., Vaughn, M., May, B., Cande, Z., Colot, V. , Doerge, R. W. (2007) Silent running: RNA interference and heterochromatic modification. Chromosome Research, 15(2 (Sup) pp. 20-21.
Ordway, J. M., Bedell, J. A., Citek, R. W., Nunberg, A., Garrido, A., Kendall, R., Stevens, J. R., Cao, D., Doerge, R. W., Korshunova, Y., Holemon, H., McPherson, J. D., Lakey, N., Leon, J., Martienssen, R. A. , Jeddeloh, J. A. (2006) Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis, 27(12) pp. 2409-23.
Irvine, D. V., Zaratiegui, Mi., Tolia, N. H., Goto, D. B., Chitwood, D. H., Vaughn, M. W., Joshua-Tor, L. , Martienssen, R. A. (2006) Argonaute slicing is required for heterochromatic silencing and spreading. Science, 313(5790) pp. 1134-7.
Ronemus, M., Vaughn, M. W. , Martienssen, R. A. (2006) MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell, 18(7) pp. 1559-74.
Garcia, D., Collier, S. A., Byrne, M. E. , Martienssen, R. A. (2006) Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Curr Biol, 16(9) pp. 933-8.
Bortiri, E., Chuck, G., Vollbrecht, E., Rocheford, T. R., Martienssen, R. A. , Hake, S. (2006) ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell, 18(3) pp. 574-585.
Locke, S. M. , Martienssen, R. A. (2006) Slicing and spreading of heterochromatic silencing by RNA interference. Cold Spring Harbor Symposia on Quantitative Biology, 71 pp. 497-503.
Jones, P. A. , Martienssen, R. A. (2005) A Blueprint for a Human Epigenome Project: The AACR Human Epigenome Workshop. Cancer Res, 65(24) pp. 11241-6.
May, B. P., Lippman, Z. B., Fang, Y., Spector, D. L. , Martienssen, R. A. (2005) Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet, 1(6) pp. e79.
Vaughn, M. W., Tanurdzic, M. , Martienssen, R. (2005) Replication, repair, and reactivation. Dev Cell, 9(6) pp. 724-5.
Rabinowicz, P. D., Citek, R., Budiman, M. A., Nunberg, A., Bedell, J. A., Lakey, N., O'Shaughnessy, A. L., Nascimento, L. U., McCombie, W. R. , Martienssen, R. A. (2005) Differential methylation of genes and repeats in land plants. Genome Research, 15(10) pp. 1431-1440.
Vaughn, M. W. , Martienssen, R. (2005) It's a small RNA world, after all. Science, 309(5740) pp. 1525-6.
Nakayama, N., Arroyo, J. M., Simorowski, J., May, B., Martienssen, R. , Irish, V. F. (2005) Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens. Plant Cell, 17(9) pp. 2486-2506.
Vollbrecht, E., Springer, P. S., Goh, L., Buckler, E. S. th , Martienssen, R. (2005) Architecture of floral branch systems in maize and related grasses. Nature, 436(7054) pp. 1119-26.
Li, F., Goto, D. B., Zaratiegui, M., Tang, X., Martienssen, R. , Cande, W. Z. (2005) Two novel proteins, Dos1 and Dos2, interact with Rik1 to regulate heterochromatic RNA interference and histone modification. Current Biology, 15(16) pp. 1448-1457.
Martienssen, R. A., Zaratiegui, M. , Goto, D. B. (2005) RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends Genet, 21(8) pp. 450-6.
Warek, U., Bedell, J., Martienssen, R. , Rabinowicz, P. (2005) Methylation filtration - A path to rapid gene discovery. Phytopathology, 95(6) pp. S109-S109.
Kidner, C. A. , Martienssen, R. A. (2005) The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Dev Biol, 280(2) pp. 504-17.
Katari, M.t S., Balija, V., Wilson, R. K., Martienssen, R. A. , McCombie, W. R. (2005) Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research, 15(4) pp. 496-504.
Vaughn, M. W. , Martienssen, R. A. (2005) Finding the right template: RNA Pol IV, a plant-specific RNA polymerase. Mol Cell, 17(6) pp. 754-6.
Gendrel, A. V., Lippman, Z., Martienssen, R. , Colot, V. (2005) Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods, 2(3) pp. 213-218.
Lippman, Z. B., Gendrel, A. V., Colot, V. , Martienssen, R. A. (2005) Profiling DNA methylation patterns using genomic tiling microarrays. Nat Methods, 2(3) pp. 219-24.
Kidner, C. A. , Martienssen, R. A. (2005) The developmental role of microRNA in plants. Current Opinion in Plant Biology, 8(1) pp. 38-44.
Ronemus, M. , Martienssen, R. (2005) RNA interference - Methylation mystery. Nature, 433(7025) pp. 472-473.
Bedell, J. A., Budiman, M. A., Nunberg, A., Citek, R. W., Robbins, D., Jones, J., Flick, E., Rohlfing, T., Fries, J., Bradford, K., McMenamy, J., Smith, M., Holeman, H., Roe, B. A., Wiley, G., Korf, I. F., Rabinowicz, P. D., Lakey, N., McCombie, W. R., Jeddeloh, J. A. , Martienssen, R. A. (2005) Sorghum genome sequencing by methylation filtration. PLoS Biology, 3(1) pp. e13.
Hansen, K. R., Burns, G., Mata, J., Volpe, T. A., Martienssen, R. A., Bahler, J. , Thon, G. (2005) Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Molecular and Cellular Biology, 25(2) pp. 590-601.
Madlung, A., Tyagi, A. P., Watson, B., Jiang, H. M., Kagochi, T., Doerge, R. W., Martienssen, R. A. , Comai, L. (2005) Genomic changes in synthetic Arabidopsis polyploids. Plant Journal, 41(2) pp. 221-230.
Kato, H., Goto, D. B., Martienssen, R. A., Urano, T., Furukawa, K. , Murakami, Y. (2005) RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science, 309(5733) pp. 467-469.
Mandell, J. G., Bahler, J., Volpe, T. A., Martienssen, R. A. , Cech, T. R. (2005) Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biology, 6(1)
Martienssen, Robert A., Doerge, R. W. , Colot, Vincent (2005) Epigenomic mapping in Arabidopsis using tiling microarrays. Chromosome Res, 13(3) pp. 299-308.
Tanurdžić, M., Doerge, R. , Martienssen, R. (2005) Microarrays: Design, analysis, and applications in functional genomics. Archive of Oncology, 13(3-4) pp. 124-125.
Martienssen, R. A. (2004) Crop Plant Genome sequence: What is it good for?. Crop Science, 44(6) pp. 1898-1899.
Lippman, Z. , Martienssen, R. A. (2004) The role of RNA interference in heterochromatic silencing. Nature, 431(7006) pp. 364-70.
Jeffrey Chen, Z., Wang, J., Tian, L., Lee, H. S., Wang, J. J., Chen, M., Lee, J. J., Josefsson, C., Madlung, A., Watson, B., Lippman, Z., Vaughn, M., Chris Pires, J., Colot, V., Doerge, R. W., Martienssen, R. A., Comai, L. , Osborn, T. C. (2004) The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological journal of the Linnean Society. Linnean Society of London, 82(4) pp. 689-700.
Lippman, Z., Gendrel, A. V., Black, M., Vaughn, M. W., Dedhia, N., McCombie, W. R., Lavine, K., Mittal, V., May, B., Kasschau, K. D., Carrington, J. C., Doerge, R. W., Colot, V. , Martienssen, R. (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature, 430(6998) pp. 471-6.
Byrne, M., Kidney, C. , Martienssen, R. (2004) Homeobox genes in Arabidopsis and their epigenetic regulation.. Developmental Biology, 271(2) pp. 553-553.
Groover, A., Fontana, J. R., Dupper, G., Ma, C. P., Martienssen, R. A., Strauss, S. , Meilan, R. (2004) Gene and enhancer trap tagging of vascular-expressed genes in poplar trees. Plant Physiology, 134(4) pp. 1742-1751.
Kidner, C. A. , Martienssen, R. A. (2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature, 428(6978) pp. 81-4.
Martienssen, R., Lippman, Z., May, B., Vaughn, M., Gendrel, A. V., Ronemus, M., Volpe, T., Kidner, C. , Colot, V. (2004) Transposons, small interfering RNA and the origin of heterochromatin. European Journal of Cell Biology, 83(Suppl) pp. 61-61.
Bastow, R., Mylne, J. S., Lister, C., Lippman, Z., Martienssen, R. A. , Dean, C. (2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature, 427(6970) pp. 164-7.
Martienssen, R., Lippman, Z., May, B., Ronemus, M. , Vaughn, M. (2004) Transposons, tandem repeats, and the silencing of imprinted genes. Cold Spring Harbor symposia on quantitative biology, 69 pp. 371-9.
Martienssen, R. A., Rabinowicz, P. D., O'Shaughnessy, A. , McCombie, W. R. (2004) Sequencing the maize genome. Current Opinion in Plant Biology, 7(2) pp. 102-107.
Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A. , McCombie, W. R. (2003) Maize genome sequencing by methylation filtrations. Science, 302(5653) pp. 2115-2117.
Lippman, Z., May, B., Yordan, C., Singer, T. , Martienssen, R. (2003) Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS biology, 1(3) pp. 420-428.
Rabinowicz, P. D., Palmer, L. E., May, B. P., Hemann, M. T., Lowe, S. W., McCombie, W. R. , Martienssen, R. A. (2003) Genes and transposons are differentially methylated in plants, but not in mammals. Genome Research, 13(12) pp. 2658-64.
Song, J. J., Liu, J., Tolia, N. H., Schneiderman, J., Smith, S. K., Martienssen, R. A., Hannon, G. J. , Joshua-Tor, L. (2003) The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nat Struct Biol, 10(12) pp. 1026-32.
Martienssen, R. A. (2003) Maintenance of heterochromatin by RNA interference of tandem repeats. Nature Genetics, 35(3) pp. 213-4.
Byrne, M. E., Kidner, C. A. , Martienssen, R. A. (2003) Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development, 13(5) pp. 551-7.
May, B. P., Liu, H., Vollbrecht, E., Senior, L., Rabinowicz, P. D., Roh, D., Pan, X. K., Stein, L., Freeling, M., Alexander, D. , Martienssen, R. (2003) Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America, 100(20) pp. 11541-11546.
Byrne, M. E., Groover, A. T., Fontana, J. R. , Martienssen, R. A. (2003) Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development, 130(17) pp. 3941-50.
Muskett, P. R., Clissold, L., Marocco, A., Springer, P. S., Martienssen, R. , Dean, C. (2003) A resource of mapped dissociation launch pads for targeted insertional mutagenesis in the Arabidopsis genome. Plant physiology, 132(2) pp. 506-16.
Osborn, T. C., Pires, J. C., Birchler, J. A., Auger, D. L., Chen, Z. J., Lee, H. S., Comai, L., Madlung, A., Doerge, R. W., Colot, V. , Martienssen, R. A. (2003) Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics, 19(3) pp. 141-7.
Kidner, C. A. , Martienssen, R. A. (2003) Macro effects of microRNAs in plants. Trends in Genetics, 19(1) pp. 13-16.
Brenner, E. D., Stevenson, D. W., McCombie, R. W., Katari, M. S., Rudd, S. A., Mayer, K. F., Palenchar, P. M., Runko, S. J., Twigg, R. W., Dai, G., Martienssen, R. A., Benfey, P. N. , Coruzzi, G. M. (2003) Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology, 4(12) pp. R78.
Groover, A. T., Fontana, J. R., Arroyo, J. M., Yordan, C., McCombie, W. R. , Martienssen, R. A. (2003) Secretion trap tagging of secreted and membrane-spanning proteins using Arabidopsis gene traps. Plant Physiology, 132(2) pp. 698-708.
May, B. P. , Martienssen, R. A. (2003) Transposon mutagenesis in the study of plant development. Critical Reviews in Plant Sciences, 22(1) pp. 1-35.
Rabinowicz, P. D., McCombie, W. R. , Martienssen, R. A. (2003) Gene enrichment in plant genomic shotgun libraries. Current Opinion in Plant Biology, 6(2) pp. 150-156.
Volpe, T., Schramke, V., Hamilton, G. L., White, S. A., Teng, G., Martienssen, R. A. , Allshire, R. C. (2003) RNA interference is required for normal centromere function in fission yeast. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 11(2) pp. 137-46.
Yu, Y., Rambo, T., Currie, J., Saski, C., Kim, H. R., Collura, K., Thompson, S., Simmons, J., Yang, T. J., Nah, G., Patel, A. J., Thurmond, S., Henry, D., Oates, R., Palmer, M., Pries, G., Gibson, J., Anderson, H., Paradkar, M., Crane, L., Dale, J., Carver, M. B., Wood, T., Frisch, D., Engler, F., Soderlund, C., Palmer, L. E., Tetylman, L., Nascimento, L., de la Bastide, M., Spiegel, L., Ware, D., O'Shaughnessy, A., Dike, S., Dedhia, N., Preston, R., Huang, E., Ferraro, K., Kuit, K., Miller, B., Zutavern, T., Katzenberger, F., Muller, S., Balija, V., Martienssen, R. A., Stein, L., Minx, P., Johnson, D., Cordum, H., Mardis, E., Cheng, Z., Jiang, J., Wilson, R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Jones, K. M., Gansberger, K., Moffat, K., Hill, J., Tsitrin, T., Overton, L., Bera, J., Kim, M., Jin, S., Tallon, L., Ciecko, A., Pai, G., van Aken, S., Utterback, T., Reidmuller, S., Bormann, J., Feldblyum, T., Hsiao, J., Zismann, V., Blunt, S., de Vazeilles, A., Shaffer, T., Koo, H., Suh, B., Yang, Q., Haas, B., Peterson, J., Pertea, M., Volfovsky, N., Wortman, J., White, O., Salzberg, S. L., Fraser, C. M., Robin Buell, C., Messing, J., Song, R., Fuks, G., Llaca, V., Kovchak, S., Young, S., Bowers, J. E. , Paterson, A. H. (2003) In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 300(5625) pp. 1566-1569.
Volpe, T. A., Kidner, C., Hall, I. M., Teng, G., Grewal, S. I. , Martienssen, R. A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science, 297(5588) pp. 1833-7.
Gendrel, A. V., Lippman, Z., Yordan, C., Colot, V. , Martienssen, R. A. (2002) Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science, 297(5588) pp. 1871-1873.
Mylona, P., Linstead, P., Martienssen, R. , Dolan, L. (2002) SCHIZORIZA controls an asymmetric cell division and restricts epidermal identity in the Arabidopsis root. Development, 129(18) pp. 4327-4334.
Mardis, E., McPherson, J., Martienssen, R., Wilson, R. K. , McCombie, W. R. (2002) What is finished, and why does it matter. Genome Research, 12(5) pp. 669-671.
Venglat, S. P., Dumonceaux, T., Rozwadowski, K., Parnell, L., Babic, V., Keller, W., Martienssen, R., Selvaraj, G. , Datla, R. (2002) The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 99(7) pp. 4730-5.
Byrne, M. E., Simorowski, J. , Martienssen, R. A. (2002) ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development, 129(8) pp. 1957-1965.
Kidner, C. A., Timmermans, M. C. P., Byrne, M. E. , Martienssen, R. A. (2002) Developmental genetics of the angiosperm leaf. Advances in Botanical Research, 38 pp. 191-234.
Budziszewski, G. J., Lewis, S. P., Glover, L. W., Reineke, J., Jones, G., Ziemnik, L. S., Lonowski, J., Nyfeler, B., Aux, G., Zhou, Q., McElver, J., Patton, D. A., Martienssen, R., Grossniklaus, U., Ma, H., Law, M. , Levin, J. Z. (2001) Arabidopsis genes essential for seedling viability: Isolation of Insertional mutants and molecular cloning. Genetics, 159(4) pp. 1765-1778.
Martienssen, R. A. , Colot, V. (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science, 293(5532) pp. 1070-1074.
Martienssen, R. (2001) Chipping away at chromatin. Nature Genetics, 27(3) pp. 240-241.
Singer, T., Yordan, C. , Martienssen, R. A. (2001) Robertson's Mutator transposons in A-thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes & Development, 15(5) pp. 591-602.
Byrne, M., Timmermans, M., Kidner, C. , Martienssen, R. (2001) Development of leaf shape. Current Opinion in Plant Biology, 4(1) pp. 38-43.
Settles, A. M., Baron, A., Barkan, A. , Martienssen, R. A. (2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics, 157(1) pp. 349-360.
Martienssen, R. , McCombie, W. R. (2001) The first plant genome. Cell, 105(5) pp. 571-574.
Byrne, M. E., Barley, R., Curtis, M., Arroyo, J. M., Dunham, M., Hudson, A. , Martienssen, R. A. (2000) Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature, 408(6815) pp. 967-971.
Petersen, M., Brodersen, P., Naested, H., Andreasson, E., Lindhart, U., Johansen, B., Nielsen, H. B., Lacy, M., Austin, M. J., Parker, J. E., Sharma, S. B., Klessig, D. F., Martienssen, R., Mattsson, O., Jensen, A. B. , Mundy, J. (2000) Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance. Cell, 103(7) pp. 1111-1120.
Chory, J., Ecker, J. R., Briggs, S., Caboche, M., Coruzzi, G. M., Cook, D., Dangl, J., Grant, S., Guerinot, M. L., Henikoff, S., Martienssen, R., Okada, K., Raikhel, N. V., Somerville, C. R. , Weigel, D. (2000) National Science Foundation Sponsored Workshop report: "The 2010 Project" - Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. Plant Physiology, 123(2) pp. 423-425.
Groover, A. T. , Martienssen, R. M. (2000) Identifying genes involved in pattern formation using Arabidopsis genetraps. Developmental Biology, 222(1) pp. 226-226.
Springer, P. S., Holding, D. R., Groover, A., Yordan, C. , Martienssen, R. A. (2000) The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G(1) phase and is required maternally for early Arabidopsis development. Development, 127(9) pp. 1815-1822.
Park, S. H., Chin, H. G., Cho, M. J., Martienssen, R. A. , Han, C. D. (2000) Inhibitor of striate conditionally suppresses cell proliferation in variegated maize. Genes & Development, 14(8) pp. 1005-1016.
Ferrandiz, C., Gu, Q., Martienssen, R. , Yanofsky, M. F. (2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development, 127(4) pp. 725-734.
Kaul, S., Koo, H. L., Jenkins, J., Rizzo, M., Rooney, T., Tallon, L. J., Feldblyum, T., Nierman, W., Benito, M. I., Lin, X., Town, C. D., Venter, J. C., Fraser, C. M., Tabata, S., Nakamura, Y., Kaneko, T., Sato, S., Asamizu, E., Kato, T., Kotani, H., Sasamoto, S., Ecker, J. R., Theologis, A., Federspiel, N. A., Palm, C. J., Osborne, B. I., Shinn, P., Dewar, K., Kim, C. J., Buehler, E., Dunn, P., Chao, Q., Chen, H., Vysotskaia, V. S., Lenz, C. A., Hansen, N. F., Liu, S. X., Alta, H., Sakano, H., Lam, B., Pham, P. K., Nguyen, M., Yu, G., Southwick, A., Lee, J. M., Miranda, M., Toriumi, M. J., Davis, R. W., Conway, A. B., Conn, L., Hootan, A., Wambutt, R., Murphy, G., Düsterhöft, A., Stiekema, W., Pohl, T., Entian, K. D., Terryn, N., Volckaert, G., Salanoubat, M., Choisne, N., Artiguenave, F., Weissenbach, J., Quetier, F., Rieger, M., Ansorge, W., Unseld, M., Fartmann, B., Valle, G., Wilson, R. K., Sekhon, M., Pepin, K., Murray, J., Johnson, D., Hillier, L., de la Bastide, M., Huang, E., Spiegel, L., Gnoj, L., Habermann, K., Dedhia, N., Parnell, L., Preston, R., Marra, M., McCombie, W. R., Chen, E., Martienssen, R., Mayer, K., Lemcke, K., Haas, B., Haase, D., Rudd, S., Schoof, H., Frishman, D., Morgenstern, B., Zaccaria, P., Mewes, H. W., White, O., Creasy, T. H. , Bielke, C. (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408(6814) pp. 796-815.
Martienssen, R. A. (2000) Weeding out the genes: the Arabidopsis genome project. Functional & Integrative Genomics, 1(1) pp. 2-11.
McCombie, W. R., De la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Yordan, C., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Dante, M., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Simorowski, J., May, B., Ma, P., Preston, R., Vil, D., Lei, H. S., Shekher, M., Matero, A., Shah, R., Swaby, I., O'Shaughnessy, A., Rodriguez, M., Hoffman, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Wilson, R. K. , Martienssen, R. (2000) The complete sequence of a heterochromatic island from a higher eukaryote. Cell, 100(3) pp. 377-386.
Tabata, S., Kaneko, T., Nakamura, Y., Kotani, H., Kato, T., Asamizu, E., Miyajima, N., Sasamoto, S., Kimura, T., Hosouchi, T., Kawashima, K., Kohara, M., Matsumoto, M., Matsuno, A., Muraki, A., Nakayama, S., Nakazaki, N., Naruo, K., Okumura, S., Shinpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M., Sato, S., de la Bastide, M., Huang, E., Spiegel, L., Gnoj, L., O'Shaughnessy, A., Preston, R., Habermann, K., Murray, J., Johnson, D., Rohlfing, T., Nelson, J., Stoneking, T., Pepin, K., Spieth, J., Sekhon, M., Armstrong, J., Becker, M., Belter, E., Cordum, H., Cordes, M., Courtney, L., Courtney, W., Dante, M., Du, H., Edwards, J., Fryman, J., Haakensen, B., Lamar, E., Latreille, P., Leonard, S., Meyer, R., Mulvaney, E., Ozersky, P., Riley, A., Strowmatt, C., Wagner-McPherson, C., Wollam, A., Yoakum, M., Bell, M., Dedhia, N., Parnell, L., Shah, R., Rodriguez, M., See, L. H., Vil, D., Baker, J., Kirchoff, K., Toth, K., King, L., Bahret, A., Miller, B., Marra, M., Martienssen, R., McCombie, W. R., Wilson, R. K., Murphy, G., Bancroft, I., Volckaert, G., Wambutt, R., Düsterhöft, A., Stiekema, W., Pohl, T., Entian, K. D., Terryn, N., Hartley, N., Bent, E., Johnson, S., Langham, S. A., McCullagh, B., Robben, J., Grymonprez, B., Zimmermann, W., Ramsperger, U. , Wedler, H. (2000) Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature, 408(6814) pp. 823-826.
Mayer, K., Schuller, C., Wambutt, R., Murphy, G., Volckaert, G., Pohl, T., Dusterhoft, A., Stiekema, W., Entian, K. D., Terryn, N., Harris, B., Ansorge, W., Brandt, P., Grivell, L., Rieger, M., Weichselgartner, M., de Simone, V., Obermaier, B., Mache, R., Muller, M., Kreis, M., Delseny, M., Puigdomenech, P., Watson, M., Schmidtheini, T., Reichert, B., Portatelle, D., Perez-Alonso, M., Boutry, M., Bancroft, I., Vos, P., Hoheisel, J., Zimmermann, W., Wedler, H., Ridley, P., Langham, S. A., McCullagh, B., Bilham, L., Robben, J., Van der Schueren, J., Grymonprez, B., Chuang, Y. J., Vandenbussche, F., Braeken, M., Weltjens, I., Voet, M., Bastiaens, I., Aert, R., Defoor, E., Weitzenegger, T., Bothe, G., Ramsperger, U., Hilbert, H., Braun, M., Holzer, E., Brandt, A., Peters, S., van Staveren, M., Dirske, W., Mooijman, P., Klein Lankhorst, R., Rose, M., Hauf, J., Kotter, P., Berneiser, S., Hempel, S., Feldpausch, M., Lamberth, S., Van den Daele, H., De Keyser, A., Buysshaert, C., Gielen, J., Villarroel, R., De Clercq, R., Van Montagu, M., Rogers, J., Cronin, A., Quail, M., Bray-Allen, S., Clark, L., Doggett, J., Hall, S., Kay, M., Lennard, N., McLay, K., Mayes, R., Pettett, A., Rajandream, M. A., Lyne, M., Benes, V., Rechmann, S., Borkova, D., Blocker, H., Scharfe, M., Grimm, M., Lohnert, T. H., Dose, S., de Haan, M., Maarse, A., Schafer, M., Müller-Auer, S., Gabel, C., Fuchs, M., Fartmann, B., Granderath, K., Dauner, D., Herzl, A., Neumann, S., Argiriou, A., Vitale, D., Liguori, R., Piravandi, E., Massenet, O., Quigley, F., Clabauld, G., Mundlein, A., Felber, R., Schnabl, S., Hiller, R., Schmidt, W., Lecharny, A., Aubourg, S., Chefdor, F., Berger, C., Montfort, A., Casacuberta, E., Gibbons, T., Weber, N., Vandenbol, M., Bargues, M., Terol, J., Perez-Perez, A., Purnelle, B., Bent, E., Johnson, S., Tacon, D., Jesse, T., Heijnen, L., Schwarz, S., Scholler, P., Heber, S., Francs, P., Bielke, C., Frishman, D., Haase, D., Lemcke, K., Mewes, H. W., Stocker, S., Zaccaria, P., Bevan, M., Wilson, R. K., de la Bastide, M., Habermann, K., Parnell, L., Dedhia, N., Gnoj, L., Schutz, K., Huang, E., Spiegel, L., Sehkon, M., Murray, J., Sheet, P., Cordes, M., Abu-Threideh, J., Stoneking, T., Kalicki, J., Graves, T., Harmon, G., Edwards, J., Latreille, P., Courtney, L., Cloud, J., Abbott, A., Scott, K., Johnson, D., Minx, P., Bentley, D., Fulton, B., Miller, N., Greco, T., Kemp, K., Kramer, J., Fulton, L., Mardis, E., Pepin, K., Hillier, L., Nelson, J., Spieth, J., Ryan, E., Andrews, S., Geisel, C., Layman, D., Du, H., Ali, J., Berghoff, A., Jones, K., Drone, K., Cotton, M., Joshu, C., Antonoiu, B., Zidanic, M., Strong, C., Sun, H., Lamar, B., Yordan, C., Ma, P., Zhong, J., Preston, R., Vil, D., Shekher, M., Matero, A., Shah, R., Swaby, I.K., O'Shaughnessy, A., Rodriguez, M., Hoffmann, J., Till, S., Granat, S., Shohdy, N., Hasegawa, A., Hameed, A., Lodhi, M., Johnson, A., Chen, E., Marra, M., Martienssen, R. , McCombie, W. R. (1999) Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature, 402(6763) pp. 769-77.
Martienssen, R. , Irish, V. (1999) Copying out our ABCs - the role of gene redundancy in interpreting genetic hierarchies. Trends in Genetics, 15(11) pp. 435-437.
Mozo, T., Dewar, K., Dunn, P., Ecker, J. R., Fischer, S., Kloska, S., Lehrach, H., Marra, M., Martienssen, R., Meier-Ewert, S. , Altmann, T. (1999) A complete BAC-based physical map of the Arabidopsis thaliana genome. Nature Genetics, 22(3) pp. 271-275.
Martienssen, R. , Henikoff, S. (1999) The House & Garden guide to chromatin remodelling. Nature Genetics, 22(1) pp. 6-7.
Bevan, M., Bancroft, I., Mewes, H. W., Martienssen, R. , McCombie, R. (1999) Clearing a path through the jungle: Progress in Arabidopsis genomics. Bioessays, 21(2) pp. 110-120.
Copenhaver, G. P., Nickel, K., Kuromori, T., Benito, M. I., Kaul, S., Lin, X., Bevan, M., Murphy, G., Harris, B., Parnell, L. D., McCombie, W. R., Martienssen, R. A., Marra, M. , Preuss, D. (1999) Genetic definition and sequence analysis of Arabidopsis centromeres. Science, 286(5449) pp. 2468-2474.
Marra, M., Kucaba, T., Sekhon, M., Hillier, L., Martienssen, R., Chinwalla, A., Crockett, J., Fedele, J., Grover, H., Gund, C., McCombie, W. R., McDonald, K., McPherson, J., Mudd, N., Parnell, L., Schein, J., Seim, R., Shelby, P., Waterston, R. , Wilson, R. (1999) A map for sequence analysis of the Arabidopsis thaliana genome. Nature Genetics, 22(3) pp. 265-270.
Rabinowicz, P. D., Schutz, K., Dedhia, N., Yordan, C., Parnell, L. D., Stein, L., McCombie, W. R. , Martienssen, R. A. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nature Genetics, 23(3) pp. 305-308.
Settles, A. M. , Martienssen, R. (1998) Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology, 8(12) pp. 494-501.
Martienssen, R. (1998) Transposons, DNA methylation and gene control. Trends in Genetics, 14(7) pp. 263-264.
Bevan, M., Bennetzen, J. L. , Martienssen, R. (1998) Genome studies and molecular evolution commonalities, contrasts, continuity and change in plant genomes. Current Opinion in Plant Biology, 1(2) pp. 101-102.
Gu, Q., Ferrandiz, C., Yanofsky, M. F. , Martienssen, R. (1998) The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development. Development, 125(8) pp. 1509-1517.
Martienssen, R. (1998) Chromosomal imprinting in plants. Current Opinion in Genetics & Development, 8(2) pp. 240-244.
Martienssen, R. A. (1998) Functional genomics: Probing plant gene function and expression with transposons. Proceedings of the National Academy of Sciences of the United States of America, 95(5) pp. 2021-2026.
Settles, A. M., Yonetani, A., Baron, A., Bush, D. R., Cline, K. , Martienssen, R. (1997) Sec-independent protein translocation by the maize Hcf106 protein. Science, 278(5342) pp. 1467-1470.
Martienssen, R. (1997) Cell death: Fatal induction in plants. Current Biology, 7(9) pp. R534-R537.
Martienssen, R. (1997) Evolutionary biology - The origin of maize branches out. Nature, 386(6624) pp. 443&445.
Bevan, M., Ecker, J., Theologis, S., Federspiel, N., Davis, R., McCombie, D., Martienssen, R., Chen, E., Waterston, B., Wilson, R., Rounsley, S., Venter, C., Tabata, S., Salanoubat, M., Quetier, F., Cherry, J. M. , Meinke, D. (1997) Objective: The complete sequence of a plant genome. Plant cell, 9(4) pp. 476-478.
Martienssen, R. (1997) The origin of maize branches out. Nature, 386(6624) pp. 443.
Martienssen, R. (1996) Epigenetic phenomena: Paramutation and gene silencing in plants. Current Biology, 6(7) pp. 810-813.
Nussaume, L., Harrison, K., Klimyuk, V., Martienssen, R., Sundaresan, V. , Jones, J. D. G. (1995) Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator. Molecular & General Genetics, 249(1) pp. 91-101.
Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H. , Martienssen, R. (1995) Patterns of Gene-Action in Plant Development Revealed by Enhancer Trap and Gene Trap Transposable Elements. Genes & development, 9(14) pp. 1797-1810.
Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J. D. G., Dean, C., Ma, H. , Martienssen, R. (1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes & Development, 9(14) pp. 1797-1810.
Springer, P. S., McCombie, W. R., Sundaresan, V. , Martienssen, R. A. (1995) Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science, 268(5212) pp. 877-880.
Das, L. , Martienssen, R. (1995) Site-selected transposon mutagenesis at the hcf106 locus in maize. Plant Cell, 7(3) pp. 287-294.
Han, C. D., Derby, R. J., Schnable, P. S. , Martienssen, R. A. (1995) Characterization of the plastids affected by class-ii albino mutations of maize at the morphological and transcript levels. Maydica, 40(1) pp. 13-22.
Martienssen, R. A. , Richards, E. J. (1995) DNA methylation in eukaryotes. Current Opinion in Genetics and Development, 5(2) pp. 234-242.
Martienssen, R. , Baron, A. (1994) Coordinate suppression of mutations caused by Robertson's mutator transposons in maize. Genetics, 136(3) pp. 1157-1170.
Vongs, A., Kakutani, T., Martienssen, R. A. , Richards, E. J. (1993) Arabidopsis thaliana DNA methylation mutants. Science, 260(5116) pp. 1926-1928.
Han, C. D., Coe, E. H. , Martienssen, R. A. (1992) Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize. EMBO J, 11(11) pp. 4037-4046.
Barkan, A. , Martienssen, R. A. (1991) Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1. Proceedings of the National Academy of Sciences of the United States of America, 88(8) pp. 3502-3506.
Doseff, A., Martienssen, R. , Sundaresan, V. (1991) Somatic excision of the Mu1 transposable element of maize. Nucleic Acids Research, 19(3) pp. 579-584.
Martienssen, R., Barkan, A., Taylor, W. C. , Freeling, M. (1990) Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize. Genes and Development, 4(3) pp. 331-343.
Martienssen, R. A., Barkan, A., Freeling, M. , Taylor, W. C. (1989) Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. EMBO J, 8(6) pp. 1633-1639.
Martienssen, R. A. , Baulcombe, D. C. (1989) An unusual wheat insertion sequence (WIS1) lies upstream of an alpha-amylase gene in hexaploid wheat, and carries a "minisatellite" array. Mol Gen Genet, 217(2-3) pp. 401-410.
Huttly, A. K., Martienssen, R. A. , Baulcombe, D. C. (1988) Sequence heterogeneity and differential expression of the alpha-Amy2 gene family in wheat. Mol Gen Genet, 214(2) pp. 232-240.
Baulcombe, D., Huttly, A. , Martienssen, R. (1987) Hormonal and development control of gene expression in wheat. Biochem Soc Trans, 15(1) pp. 9-11.
Taylor, W. C., Barkan, A. , Martienssen, R. A. (1987) Use of nuclear mutants in the analysis of chloroplast development. Dev Genet, 8(5-6) pp. 305-320.
Baulcombe, D., Lazarus, C. , Martienssen, R. (1984) Gibberellins and gene control in cereal aleurone cells. J Embryol Exp Morphol, 83 Sup pp. 119-135.
Pfeifer, F., Betlach, M., Martienssen, R., Friedman, J. , Boyer, H. W. (1983) Transposable elements of halobacterium-halobium. Molecular & General Genetics, 191(2) pp. 182-188.