Herridge, Rowan P, Dolata, Jakub, Migliori, Valentina, de Santis Alves, Cristiane, Borges, Filipe, Van Ex, Frédéric, Lin, Ann, Bajczyk, Mateusz, Leonardi, Tommaso, Hendrick, Alan, Schorn, Andrea J, Kouzarides, Tony, Martienssen, Robert A (August 2023) Pseudouridine guides germline small RNA transport and epigenetic inheritance. bioRxiv. (Public Dataset)
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Abstract
UNLABELLED: Epigenetic modifications that arise during plant and animal development, such as DNA and histone modification, are mostly reset during gamete formation, but some are inherited from the germline including those marking imprinted genes 1,2 . Small RNAs guide these epigenetic modifications, and some are also inherited by the next generation 3,4 . In C. elegans , inherited small RNA precursors have poly (UG) tails 5 , but how inherited small RNAs are distinguished in other animals and plants is unknown. Pseudouridine (Ψ) is the most abundant RNA modification but has not been explored in small RNAs. Here, we develop novel assays to detect Ψ in short RNA sequences, demonstrating its presence in mouse and Arabidopsis microRNAs and their precursors. We also detect substantial enrichment in germline small RNAs, namely epigenetically activated siRNAs (easiRNAs) in Arabidopsis pollen, and piwi-interacting piRNAs in mouse testis. In pollen, pseudouridylated easiRNAs are localized to sperm cells, and we found that PAUSED/HEN5 (PSD) , the plant homolog of Exportin-t, interacts genetically with Ψ and is required for transport of easiRNAs into sperm cells from the vegetative nucleus. We further show that Exportin-t is required for the triploid block: chromosome dosage-dependent seed lethality that is epigenetically inherited from pollen. Thus, Ψ has a conserved role in marking inherited small RNAs in the germline. ONE-SENTENCE SUMMARY: Pseudouridine marks germline small RNAs in plants and mammals, impacting epigenetic inheritance via nuclear transport.
| Item Type: | Paper |
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| Subjects: | organism description > plant > Arabidopsis organism description > animal > C elegans bioinformatics > genomics and proteomics > genetics & nucleic acid processing > epigenetics bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > epigenetics bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > sRNA |
| CSHL Authors: | |
| Communities: | CSHL labs > Martienssen lab CSHL labs > Schorn lab |
| SWORD Depositor: | CSHL Elements |
| Depositing User: | CSHL Elements |
| Date: | 3 August 2023 |
| Date Deposited: | 08 Sep 2023 16:14 |
| Last Modified: | 29 Apr 2024 15:42 |
| PMCID: | PMC10312437 |
| Related URLs: | |
| Dataset ID: |
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| URI: | https://repository.cshl.edu/id/eprint/40895 |
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