Abdelhamid, R. F., Plessy, C., Yamauchi, Y., Taoka, M., de Hoon, M., Gingeras, T. R., Isobe, T., Carninci, P. (July 2014) Multiplicity of 5' Cap Structures Present on Short RNAs. PLoS One, 9 (7). e102895. ISSN 1932-6203
Agrusa, C. J., Sordella, R., Paul, S., Lee, P. C., Port, J., Altorki, N. K., Stiles, B. M. (September 2014) A Novel Platform for Proteomic Analysis of Proximal Source Pulmonary Venous Blood Identifies Potential Biomarkers for Non-Small Cell Lung Cancer (NSCLC). Journal of the American College of Surgeons, 219 (3 Supp). S37-S37. ISSN 1072-7515
Aguirre-Chen, C., Hammell, C. M. (2014) Cell death machinery makes life more robust. Elife, 3. e05816. ISSN 2050-084X (Electronic)2050-084X (Linking)
Akhade, V. S., Arun, G., Donakonda, S., Satyanarayana Rao, M. R. (October 2014) Genome wide chromatin occupancy of mrhl RNA and its role in gene regulation in mouse spermatogonial cells. RNA Biol, 11 (10). pp. 1262-79. ISSN 1547-6286
Alpatov, R., Lesch, B. J., Nakamoto-Kinoshita, M., Blanco, A., Chen, S., Stutzer, A., Armache, K. J., Simon, M. D., Xu, C., Ali, M., Murn, J., Prisic, S., Kutateladze, T. G., Vakoc, C. R., Min, J., Kingston, R. E., Fischle, W., Warren, S. T., Page, D. C., Shi, Y. (May 2014) A Chromatin-Dependent Role of the Fragile X Mental Retardation Protein FMRP in the DNA Damage Response. Cell, 157 (4). pp. 869-81. ISSN 0092-8674
Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Bornholdt, J., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O., Jorgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., Muller, F., Forrest, A. R., Carninci, P., Rehli, M., Sandelin, A., FANTOM Consortium (March 2014) An atlas of active enhancers across human cell types and tissues. Nature, 507 (7493). pp. 455-61. ISSN 0028-0836
Andlauer, T. F., Scholz-Kornehl, S., Tian, R., Kirchner, M., Babikir, H. A., Depner, H., Loll, B., Quentin, C., Gupta, V. K., Holt, M. G., Dipt, S., Cressy, M., Wahl, M. C., Fiala, A., Selbach, M., Schwarzel, M., Sigrist, S. J. (November 2014) Drep-2 is a novel synaptic protein important for learning and memory. Elife, 3. ISSN 2050-084x
Arbiza, L., Gottipati, S., Siepel, A., Keinan, A. (June 2014) Contrasting X-linked and autosomal diversity across 14 human populations. Am J Hum Genet, 94 (6). pp. 827-44. ISSN 0002-9297
Atwal, Gurinder Singh (2014) Statistical mechanics of multistable perception. BioRxiv.
Bapiro, T. E., Frese, K. K., Courtin, A., Bramhall, J. L., Madhu, B., Cook, N., Neesse, A., Griffiths, J. R., Tuveson, D. A., Jodrell, D. I., Richards, F. M. (May 2014) Gemcitabine diphosphate choline is a major metabolite linked to the Kennedy pathway in pancreatic cancer models in vivo. British Journal of Cancer, 111 (2). pp. 318-325. ISSN 0007-0920
Barash, Carol Isaacson, Lyon, Gholson (November 2014) Open access and data sharing: Easier said than done. Applied & Translational Genomics. ISSN 2212-0661
Barbosa, P., Berry, D. L., Kary, C. S. (2014) Insect Histology: Practical Laboratory Techniques. Insect Histology: Practical Laboratory Techniques . Wiley.
Barnes, S., Jones, D., Belliveau, N., Sundaresh, S., Kinney, J., Phillips, R. (January 2014) Identification and Analysis of the Transcriptional Regulatory Networks Governing Mechanosensitive Channels in E. coli. Biophysical Journal, 106 (2; Sup). 487A-487A. ISSN 0006-34951542-0086
Baslan, T., Hicks, J. (July 2014) Single cell sequencing approaches for complex biological systems. Curr Opin Genet Dev, 26c. pp. 59-65. ISSN 0959-437x
Bassett, A. R., Akhtar, A., Barlow, D. P., Bird, A. P., Brockdorff, N., Duboule, D., Ephrussi, A., Ferguson-Smith, A. C., Gingeras, T. R., Haerty, W., Higgs, D. R., Miska, E. A., Ponting, C. P. (August 2014) Considerations when investigating IncRNA function in vivo. Elife, 3. ISSN 2050-084X
Batut, Philippe (April 2014) Promoter Evolution in Drosophila: Non-Coding Transcription & Transposon-Driven Innovation. PhD thesis, Cold Spring Harbor Laboratory.
Baumgart, S., Chen, N. M., Siveke, J. T., Konig, A., Zhang, J. S., Singh, S. K., Wolf, E., Bartkuhn, M., Esposito, I., Hessmann, E., Reinecke, J., Nikorowitsch, J., Brunner, M., Singh, G., Fernandez-Zapico, M. E., Smyrk, T., Bamlet, W. R., Eilers, M., Neesse, A., Gress, T. M., Billadeau, D. D., Tuveson, D., Urrutia, R., Ellenrieder, V. (June 2014) Inflammation-Induced NFATc1-STAT3 Transcription Complex Promotes Pancreatic Cancer Initiation by Kras(G12D). Cancer Discovery, 4 (6). pp. 688-701. ISSN 2159-8274
Becker, J. D., Takeda, S., Borges, F., Dolan, L., Feijo´, J. A. (August 2014) Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature. BMC Plant Biology, 14 (1). ISSN 14712229
Beer, R., Herbst, K., Ignatiadis, N., Kats, I., Adlung, L., Meyer, H., Niopek, D., Christiansen, T., Georgi, F., Kurzawa, N., Meichsner, J., Rabe, S., Riedel, A., Sachs, J., Schessner, J., Schmidt, F., Walch, P., Niopek, K., Heinemann, T., Eils, R., Di Ventura, B. (July 2014) Creating functional engineered variants of the single-module non-ribosomal peptide synthetase IndC by T domain exchange. Mol Biosyst, 10 (7). pp. 1709-18. ISSN 1742-2051
Bekritsky, M. (August 2014) Detecting de novo microsatellite mutations in a population of families with sporadic autism. PhD thesis, Cold Spring Harbor Laboratory.
Bell, R. D., Long, X., Lin, M., Bergmann, J. H., Nanda, V., Cowan, S. L., Zhou, Q., Han, Y., Spector, D. L., Zheng, D., Miano, J. M. (February 2014) Identification and Initial Functional Characterization of a Human Vascular Cell-Enriched Long Noncoding RNA. Arteriosclerosis, thrombosis, and vascular biology, 34 (6). pp. 1249-1259. ISSN 1079-5642
Benkovics, A. H., Timmermans, M. C. (June 2014) Developmental patterning by gradients of mobile small RNAs. Current Opinion in Genetics & Development, 27C. pp. 83-91. ISSN 0959-437X
Bergmann, Jan H., Spector, David L. (February 2014) Long non-coding RNAs: modulators of nuclear structure and function. Current Opinion in Cell Biology, 26. pp. 10-18. ISSN 0955-0674
Bhagwat, A. S., Vakoc, C. R. (March 2014) A new bump in the epigenetic landscape. Molecular Cell, 53 (6). pp. 857-8. ISSN 1097-2765
Bilan, Dmitry S., Matlashov, Mikhail E., Gorokhovatsky, Andrey Yu, Schultz, Carsten, Enikolopov, Grigori, Belousov, Vsevolod V. (January 2014) Genetically encoded fluorescent indicator for imaging NAD+/NADH ratio changes in different cellular compartments. Biochimica et Biophysica Acta (BBA) - General Subjects, 1840 (3). pp. 951-957. ISSN 0304-4165
Blood, P. D., Marcus, S., Schatz, M. C. (July 2014) Large-scale sequencing and assembly of cereal genomes using blacklight. Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment. Article number 20.
Bolden, J. E., Tasdemir, N., Dow, L. E., van Es, J. H., Wilkinson, J. E., Zhao, Z., Clevers, H., Lowe, S. W. (September 2014) Inducible In Vivo Silencing of Brd4 Identifies Potential Toxicities of Sustained BET Protein Inhibition. Cell Rep, 8 (6). pp. 1919-1929. ISSN 2211-1247
Borniger, J. C., Maurya, S. K., Periasamy, M., Nelson, R. J. (October 2014) Acute dim light at night increases body mass, alters metabolism, and shifts core body temperature circadian rhythms. Chronobiol Int, 31 (8). pp. 917-25. ISSN 1525-6073 (Electronic)0742-0528 (Linking)
Borniger, J. C., McHenry, Z. D., Abi Salloum, B. A., Nelson, R. J. (June 2014) Exposure to dim light at night during early development increases adult anxiety-like responses. Physiol Behav, 133. pp. 99-106. ISSN 1873-507X (Electronic)0031-9384 (Linking)
Bots, M., Verbrugge, I., Martin, B. P., Salmon, J. M., Ghisi, M., Baker, A., Stanley, K., Shortt, J., Ossenkoppele, G. J., Zuber, J., Rappaport, A. R., Atadja, P., Lowe, S. W., Johnstone, R. W. (February 2014) Differentiation therapy for the treatment of t(8;21) acute myeloid leukemia using histone deacetylase inhibitors. Blood, 123 (9). pp. 1341-52. ISSN 0006-4971
Brooks, C., Nekrasov, V., Lippman, Z., Van Eck, J. (September 2014) Efficient gene editing in tomato in the first generation using the CRISPR/Cas9 system. Plant Physiology, 166 (3). pp. 1292-1297. ISSN 0032-0889
Brown, J. B., Boley, N., Eisman, R., May, G. E., Stoiber, M. H., Duff, M. O., Booth, B. W., Wen, J., Park, S., Suzuki, A. M., Wan, K. H., Yu, C., Zhang, D., Carlson, J. W., Cherbas, L., Eads, B. D., Miller, D., Mockaitis, K., Roberts, J., Davis, C. A., Frise, E., Hammonds, A. S., Olson, S., Shenker, S., Sturgill, D., Samsonova, A. A., Weiszmann, R., Robinson, G., Hernandez, J., Andrews, J., Bickel, P. J., Carninci, P., Cherbas, P., Gingeras, T. R., Hoskins, R. A., Kaufman, T. C., Lai, E. C., Oliver, B., Perrimon, N., Graveley, B. R., Celniker, S. E. (March 2014) Diversity and dynamics of the Drosophila transcriptome. Nature, 512 (7515). pp. 393-399. ISSN 0028-0836
Brownstein, C. A., Beggs, A. H., Homer, N., Merriman, B., Yu, T. W., Flannery, K. C., Dechene, E. T., Towne, M. C., Savage, S. K., Price, E. N., Holm, I. A., Luquette, L. J., Lyon, E., Majzoub, J., Neupert, P., McCallie, D., Szolovits, P., Willard, H. F., Mendelsohn, N. J., Temme, R., Finkel, R. S., Yum, S. W., Medne, L., Sunyaev, S. R., Adzhubey, I., Cassa, C. A., de Bakker, P. I., Duzkale, H., Dworzy Ski, P., Fairbrother, W., Francioli, L., Funke, B. H., Giovanni, M. A., Handsaker, R. E., Lage, K., Lebo, M. S., Lek, M., Leshchiner, I., Macarthur, D. G., McLaughlin, H. M., Murray, M. F., Pers, T. H., Polak, P. P., Raychaudhuri, S., Rehm, H. L., Soemedi, R., Stitziel, N. O., Vestecka, S., Supper, J., Gugenmus, C., Klocke, B., Hahn, A., Schubach, M., Menzel, M., Biskup, S., Freisinger, P., Deng, M., Braun, M., Perner, S., Smith, R. J., Andorf, J. L., Huang, J., Ryckman, K., Sheffield, V. C., Stone, E. M., Bair, T., Black-Ziegelbein, E. A., Braun, T. A., Darbro, B., Deluca, A. P., Kolbe, D. L., Scheetz, T. E., Shearer, A. E., Sompallae, R., Wang, K., Bassuk, A. G., Edens, E., Mathews, K., Moore, S. A., Shchelochkov, O. A., Trapane, P., Bossler, A., Campbell, C. A., Heusel, J. W., Kwitek, A., Maga, T., Panzer, K., Wassink, T., Van Daele, D., Azaiez, H., Booth, K., Meyer, N., Segal, M. M., Williams, M. S., Tromp, G., White, P., Corsmeier, D., Fitzgerald-Butt, S., Herman, G., Lamb-Thrush, D. (March 2014) An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biology, 15 (3). R53. ISSN 1465-6906
Caffrey, M., Eifert, R., Li, D., Howe, N. (October 2014) The lipid cubic phase or method for crystallizing proteins. Bushings for better manual dispensing. Journal of Applied Crystallography, 47 (Pt 5). pp. 1804-1806. ISSN 0021-8898 (Print)0021-8898
Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hufnagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S. H., Childs, K. L., Sun, Y., Jiang, N., Yandell, M. (February 2014) MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations. Plant Physiol, 164 (2). pp. 513-24. ISSN 0032-0889
Campbell, R. A., Eifert, R. W., Turner, G. C. (March 2014) Openstage: a low-cost motorized microscope stage with sub-micron positioning accuracy. PLoS One, 9 (2). e88977. ISSN 1932-6203
Castanon, E., Soltermann, A., Lopez, I., Ecay, M., Collantes, M., Picazo, J. M. L., Ponz, M., Rolfo, C., Calvo, A., Gil-Bazo, I. (November 2014) Inhibitor of differentiation 1 (Id1) expression in lung cancer cells and liver microenvironment is required for liver metastasis (LM) development from non-small cell lung cancer (NSCLC) by regulating EMT-related and proliferation-related proteins. European Journal of Cancer, 50. p. 65. ISSN 0959-8049
Castel, S. E. (September 2014) Transcriptional regulation in the context of DNA replication by RNA interference in fission yeast. PhD thesis, Cold Spring Harbor Laboratory.
Castel, Stephane E, Ren, Jie, Bhattacharjee, Sonali, Chang, An-Yun, Sánchez, Mar, Valbuena, Alberto, Antequera, Francisco, Martienssen, Robert A (October 2014) Dicer Promotes Transcription Termination at Sites of Replication Stress to Maintain Genome Stability. Cell, 159 (3). pp. 572-583. ISSN 0092-8674
Catanzaro, J. M., Sheshadri, N., Pan, J. A., Sun, Y., Shi, C., Li, J., Powers, R. S., Crawford, H. C., Zong, W. X. (April 2014) Oncogenic Ras induces inflammatory cytokine production by upregulating the squamous cell carcinoma antigens SerpinB3/B4. Nature Communications, 5. p. 3729. ISSN 20411723
Cazakoff, B. N., Lau, B. Y., Crump, K. L., Demmer, H. S., Shea, S. D. (March 2014) Broadly tuned and respiration-independent inhibition in the olfactory bulb of awake mice. Nature Neuroscience. ISSN 1097-6256
Chandel, N. S., Tuveson, D. A. (July 2014) The Promise and Perils of Antioxidants for Cancer Patients. New England Journal of Medicine, 371 (2). pp. 177-178. ISSN 0028-4793
Chang, K., Marran, K., Valentine, A., Hannon, G. J. (2014) Generation of transgenic drosophila expressing shRNAs in the miR-1 backbone. Cold Spring Harbor Protocols, 2014 (5). pp. 501-509. ISSN 19403402
Chaudhary, F., Lucito, R., Tonks, N. K. (October 2014) Missing-in-Metastasis regulates cell motility and invasion via PTPdelta-mediated changes in SRC activity. Biochemical Journal, 465 (1). pp. 89-101. ISSN 0264-6021
Cheadle, L., Biederer, T. (June 2014) Activity-dependent regulation of dendritic complexity by semaphorin 3A through Farp1. J Neurosci, 34 (23). pp. 7999-8009. ISSN 0270-6474 (Print)0270-6474
Chen, A. Y., Wilburn, P., Hao, X., Tully, T. (November 2014) Walking deficits and centrophobism in an alpha-synuclein fly model of Parkinson's disease. Genes, Brain, and Behavior, 13 (8). pp. 812-20. ISSN 1601-183x
Chen, A. Y., Xia, S., Wilburn, P., Tully, T. (May 2014) Olfactory deficits in an alpha-synuclein fly model of Parkinson's disease. PLoS ONE, 9 (5). e97758. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Chen, C., Liu, Y., Rappaport, A. R., Kitzing, T., Schultz, N., Zhao, Z., Shroff, A. S., Dickins, R. A., Vakoc, C. R., Bradner, J. E., Stock, W., Lebeau, M. M., Shannon, K. M., Kogan, S., Zuber, J., Lowe, S. W. (April 2014) MLL3 Is a Haploinsufficient 7q Tumor Suppressor in Acute Myeloid Leukemia. Cancer Cell, 25 (5). pp. 652-665. ISSN 1878-3686 (Electronic)1535-6108 (Linking)
Chen, H., Jackson, D., Kim, J. Y. (February 2014) Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking. Plant Signaling and Behavior, 9 (2). ISSN 1559-2316
Chen, Hsu-Hsin, Welling, Maaike, Bloch, Donald B, Muñoz, Javier, Mientjes, Edwin, Chen, Xinjie, Tramp, Cody, Wu, Jie, Yabuuchi, Akiko, Chou, Yu-Fen, Buecker, Christa, Krainer, Adrian, Willemsen, Rob, Heck, Albert J, Geijsen, Niels (October 2014) DAZL Limits Pluripotency, Differentiation, and Apoptosis in Developing Primordial Germ Cells. Stem Cell Reports, 3 (5). pp. 892-904. ISSN 2213-6711
Chen, M., Nowak, D. G., Trotman, L. C. (June 2014) Molecular Pathways: PI3K Pathway Phosphatases as Biomarkers for Cancer Prognosis and Therapy. Clinical Cancer Research, 20 (12). pp. 3057-63. ISSN 1078-0432
Cheng, Y., Ma, Z., Kim, B. H., Wu, W., Cayting, P., Boyle, A. P., Sundaram, V., Xing, X., Dogan, N., Li, J., Euskirchen, G., Lin, S., Lin, Y., Visel, A., Kawli, T., Yang, X., Patacsil, D., Keller, C. A., Giardine, B., Kundaje, A., Wang, T., Pennacchio, L. A., Weng, Z., Hardison, R. C., Snyder, M. P., Consortium, Mouse ENCODE (November 2014) Principles of regulatory information conservation between mouse and human. Nature, 515 (7527). pp. 371-5. ISSN 0028-0836
Chio, II, Yordanov, G., Tuveson, D. (November 2014) MAX-ing out MYC: a novel small molecule inhibitor against MYC-dependent tumors. Journal of the National Cancer Institute, 106 (12). ISSN 0027-8874
Chipman, A. D., Ferrier, D. E. K., Brena, C., Qu, J., Hughes, D. S. T., Schröder, R., Torres-Oliva, M., Znassi, N., Jiang, H., Almeida, F. C., Alonso, C. R., Apostolou, Z., Aqrawi, P., Arthur, W., Barna, J. C. J., Blankenburg, K. P., Brites, D., Capella-Gutiérrez, S., Coyle, M., Dearden, P. K., Du Pasquier, L., Duncan, E. J., Ebert, D., Eibner, C., Erikson, G., Evans, P. D., Extavour, C. G., Francisco, L., Gabaldón, T., Gillis, W. J., Goodwin-Horn, E. A., Green, J. E., Griffiths-Jones, S., Grimmelikhuijzen, C. J. P., Gubbala, S., Guigó, R., Han, Y., Hauser, F., Havlak, P., Hayden, L., Helbing, S., Holder, M., Hui, J. H. L., Hunn, J. P., Hunnekuhl, V. S., Jackson, L. R., Javaid, M., Jhangiani, S. N., Jiggins, F. M., Jones, T. E., Kaiser, T. S., Kalra, D., Kenny, N. J., Korchina, V., Kovar, C. L., Kraus, F. B., Lapraz, F., Lee, S. L., Lv, J., Mandapat, C., Manning, G., Mariotti, M., Mata, R., Mathew, T., Neumann, T., Newsham, I., Ngo, D. N., Ninova, M., Okwuonu, G., Ongeri, F., Palmer, W. J., Patil, S., Patraquim, P., Pham, C., Pu, L. L., Putman, N. H., Rabouille, C., Ramos, O. M., Rhodes, A. C., Robertson, H. E., Robertson, H. M., Ronshaugen, M., Rozas, J., Saada, N., Sánchez-Gracia, A., Scherer, S. E., Schurko, A. M., Siggens, K. W., Simmons, D. N., Stief, A., Stolle, E., Telford, M. J., Tessmar-Raible, K., Thornton, R., van der Zee, M., von Haeseler, A., Williams, J. M., Willis, J. H., Wu, Y., Zou, X. (2014) The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima. PLoS Biology, 12 (11).
Cho, H., Herzka, T., Zheng, W., Qi, J., Wilkinson, J. E., Bradner, J. E., Robinson, B. D., Castillo-Martin, M., Cordon-Cardo, C., Trotman, L. C. (January 2014) RapidCaP, a novel GEM model for analysis and therapy of metastatic prostate cancer, reveals Myc as a driver of Pten-mutant metastasis. Cancer Discovery, 4 (3). pp. 318-33. ISSN 21598274
Chuang, P. Y., Xu, J., Dai, Y., Jia, F., Mallipattu, S. K., Yacoub, R., Gu, L., Premsrirut, P. K., He, J. C. (July 2014) In Vivo RNA interference models of inducible and reversible sirt1 knockdown in kidney cells. The American Journal of Pathology, 184 (7). pp. 1940-56. ISSN 0002-9440
Churchland, A. K. (December 2014) Curriculum Vitae for Anne Churchland. UNSPECIFIED. (Unpublished)
Claeys, H., Van Landeghem, S., Dubois, M., Maleux, K., Inzé, D. (June 2014) What Is Stress? Dose-response effects in commonly used in vitro stress assays. Plant Physiology, 165 (2). pp. 519-527. ISSN 15322548
Cokol, M., Weinstein, Z. B., Yilancioglu, K., Tasan, M., Doak, A., Cansever, D., Mutlu, B., Li, S., Rodriguez-Esteban, R., Akhmedov, M., Guvenek, A., Cokol, M., Cetiner, S., Giaever, G., Iossifov, I., Nislow, C., Shoichet, B., Roth, F. P. (April 2014) Large-Scale Identification and Analysis of Suppressive Drug Interactions. Chemistry & Biology, 21 (4). pp. 541-551. ISSN 1074-5521
Coppolino, A., Agrusa, C. J., Kajno, E., Ryu, S., Sordella, R., Altorki, N. K., Stiles, B. M. (September 2014) Bone Marrow Induces STAT3 Pathway Activation in a Model of Disseminated Non-Small Cell Lung Cancer Cells. Journal of the American College of Surgeons, 219 (3 Supp). S31-S31. ISSN 1072-7515
Corbo, V., Ponz-Sarvise, M., Tuveson, D. A. (September 2014) The RAS and YAP1 dance, who is leading? EMBO journal, 33 (21). pp. 3437-2438. ISSN 0261-4189
Core, L. J., Martins, A. L., Danko, C. G., Waters, C. T., Siepel, A., Lis, J. T. (December 2014) Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers. Nat Genet, 46 (12). pp. 1311-20. ISSN 1061-4036
Corless, C. L., Ballman, K. V., Antonescu, C. R., Kolesnikova, V., Maki, R. G., Pisters, P. W., Blackstein, M. E., Blanke, C. D., Demetri, G. D., Heinrich, M. C., von Mehren, M., Patel, S., McCarter, M. D., Owzar, K., DeMatteo, R. P. (May 2014) Pathologic and molecular features correlate with long-term outcome after adjuvant therapy of resected primary GI stromal tumor: the ACOSOG Z9001 trial. J Clin Oncol, 32 (15). pp. 1563-70. ISSN 1527-7755 (Electronic)0732-183X (Linking)
Couger, M. B., Pipes, L., Squina, F., Prade, R., Siepel, A., Palermo, R., Katze, M. G., Mason, C. E., Blood, P. D. (September 2014) Enabling large-scale next-generation sequence assembly with Blacklight. Concurrency and computation : practice & experience, 26 (13). pp. 2157-2166. ISSN 1532-0626 (Print)1532-0626
Cousins, A. R., Ritson, D., Sharma, P., Stevens, M. F., Moses, J. E., Searle, M. S. (December 2014) Ligand selectivity in stabilising tandem parallel folded G-quadruplex motifs in human telomeric DNA sequences. Chem Commun (Camb), 50 (96). pp. 15202-5. ISSN 1359-7345
Creasey, K. M., Zhai, J., Borges, F., Van Ex, F., Regulski, M., Meyers, B. C., Martienssen, R. A. (March 2014) miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature, 508 (7496). pp. 411-415. ISSN 0028-0836
Cressy, M., Valente, D., Altick, A., Kockenmesiter, E., Honegger, K., Qin, H., Mitra, P. P., Dubnau, J. (May 2014) Laboratory evolution of adenylyl cyclase independent learning in Drosophila and missing heritability. Genes, Brain and Behavior, 13 (6). pp. 565-577. ISSN 16011848
Crockford, A., Jamal-Hanjani, M., Hicks, J., Swanton, C. (January 2014) Implications of intratumour heterogeneity for treatment stratification. Journal of Pathology, 232 (2). pp. 264-273. ISSN 00223417 (ISSN)
Croft, D., Mundo, A. F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M. R., Jassal, B., Jupe, S., Matthews, L., May, B., Palatnik, S., Rothfels, K., Shamovsky, V., Song, H., Williams, M., Birney, E., Hermjakob, H., Stein, L., D'Eustachio, P. (January 2014) The Reactome pathway knowledgebase. Nucleic Acids Research, 42 (Databa). D472-7. ISSN 0305-1048
Dago, A. E., Stepansky, A., Carlsson, A., Luttgen, M., Kendall, J., Baslan, T., Kolatkar, A., Wigler, M., Bethel, K., Gross, M. E., Hicks, J., Kuhn, P. (August 2014) Rapid phenotypic and genomic change in response to therapeutic pressure in prostate cancer inferred by high content analysis of single circulating tumor cells. PLoS One, 9 (8). e101777. ISSN 1932-6203
Das, P. P., Shao, Z., Beyaz, S., Apostolou, E., Pinello, L., Angeles, A. L., O'Brien, K., Atsma, J. M., Fujiwara, Y., Nguyen, M., Ljuboja, D., Guo, G., Woo, A., Yuan, G. C., Onder, T., Daley, G., Hochedlinger, K., Kim, J., Orkin, S. H. (January 2014) Distinct and combinatorial functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in mouse embryonic stem cell identity. Mol Cell, 53 (1). pp. 32-48. ISSN 1097-4164 (Electronic)1097-2765 (Linking)
Das, S., Krainer, A. R. (May 2014) Emerging functions of SRSF1, splicing factor and oncoprotein, in RNA metabolism and cancer. Molecular Cancer Research, 12 (9). pp. 1195-1204. ISSN 1541-7786
Davies, C. C., Harvey, E., McMahon, R. F. T., Finegan, K. G., Connor, F., Davis, R. J., Tuveson, D. A., Tournier, C. (April 2014) Impaired JNK signaling cooperates with KrasG12D expression to accelerate pancreatic ductal adenocarcinoma. Cancer Research, 74 (12). pp. 3344-3356. ISSN 15387445
Delaneau, O., Marchini, J., McVeanh, G. A., Donnelly, P., Lunter, G., Marchini, J. L., Myers, S., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Kerasidou, A., Churchhouse, C., Altshuler, D. M., Gabriel, S. B., Lander, E. S., Gupta, N., Daly, M. J., DePristo, M. A., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Li, H., Reich, D., Durbin, R. M., Hurles, M. E., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Scally, A., Walter, K., Xue, Y., Zhang, Y., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Chris, T. S., Abecasis, G. R., Kang, H. M., Anderson, P., Blackwell, T., Busonero, F., Fuchsberger, C., Jun, G., Maschio, A., Porcu, E., Sidore, C., Tan, A., Trost, M. K., Bentley, D. R., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., Murray, L., Shaw, R., Chakravarti, A., Clark, A. G., Keinan, A., Rodriguez-Flores, J. L., De LaVega, F. M., Degenhardt, J., Eichler, E. E., Flicek, P., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Beal, K. (June 2014) Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. Nature Communications, 5. p. 3934. ISSN 20411723
Delevich, K.M. (October 2014) Synaptic effects of disrupted-in-schizophrenia 1 loss-of-function in the medial prefrontal cortex and thalamofrontal feedforward inhibitory circuit. PhD thesis, Cold Spring Harbor Laboratory.
Dempster, S., Harper, S., Moses, J. E., Dreveny, I. (May 2014) Structural characterization of the apo form and NADH binary complex of human lactate dehydrogenase. Acta Crystallogr D Biol Crystallogr, 70 (Pt 5). pp. 1484-90. ISSN 0907-4449 (Print)0907-4449
Deng, L., Shang, L., Bai, S., Chen, J., He, X., Trevino, R. M., Chen, S., Li, X., Meng, X., Yu, B., Wang, X., Liu, Y., McDermott, S. P., Ariazi, A. E., Ginestier, C., Ibarra, I., Ke, J., Luther, T. K., Clouthier, S. G., Xu, L., Shan, G., Song, E., Yao, H., Hannon, G. J., Weiss, S. J., Wicha, M. S., Liu, S. (September 2014) microRNA100 inhibits self-renewal of breast cancer stem-like cells and breast tumor development. Cancer Res, 74 (22). pp. 6648-6660. ISSN 0008-5472
Doerfel, Max, Lyon, Gholson J. (October 2014) Molecular and cellular effects of the Ogden syndrome S37P mutation on the function of the N-terminal acetyltransferase Naa10. In: 64th Annual Meeting of the American Society of Human Genetics (ASHG), October 2014, San Diego, California. (Unpublished)
Dotto, M. C., Petsch, K. A., Aukerman, M. J., Beatty, M., Hammell, M., Timmermans, M. C. (December 2014) Genome-Wide Analysis of leafbladeless1-Regulated and Phased Small RNAs Underscores the Importance of the TAS3 ta-siRNA Pathway to Maize Development. PLoS Genetics, 10 (12). e1004826. ISSN 1553-7390
Dow, L. E., Nasr, Z., Saborowski, M., Ebbesen, S. H., Manchado, E., Tasdemir, N., Lee, T., Pelletier, J., Lowe, S. W. (April 2014) Conditional Reverse Tet-Transactivator Mouse Strains for the Efficient Induction of TRE-Regulated Transgenes in Mice. PLoS ONE, 9 (4). e95236. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Downs, G. S., Liseron-Monfils, C., Lukens, L. N. (March 2014) Regulatory motifs identified from a maize developmental coexpression network. Genome, 57 (3). pp. 181-184. ISSN 0831-2796
Eckersley-Maslin, Melanie A. (January 2014) Characteristics of random monoallelic gene expression during embryonic stem cell differentiation. PhD thesis, Cold Spring Harbor Laboratory.
Eckersley-Maslin, M. A., Spector, D. L. (June 2014) Random monoallelic expression: Regulating gene expression one allele at a time. Trends in Genetics, 30 (6). pp. 237-244. ISSN 13624555
Eckersley-Maslin, M. A., Thybert, D., Bergmann, J. H., Marioni, J. C., Flicek, P., Spector, D. L. (February 2014) Random Monoallelic Gene Expression Increases upon Embryonic Stem Cell Differentiation. Developmental Cell, 28 (4). pp. 351-65. ISSN 1534-5807
Eckmeier, D., Shea, S. D. (November 2014) Noradrenergic plasticity of olfactory sensory neuron inputs to the main olfactory bulb. Journal of Neuroscience, 34 (46). pp. 15234-43. ISSN 0270-6474
Egeblad, M., Nakasone, E., Askautrud, H., Wysocki, R., Fein, M., Kees, T., Park, J., Park, J. H. (November 2014) Understanding drug responses and resistance mechanisms using imaging in live mice. Molecular Cancer Research, 12 (Supple). ISSN 1541-7786
Ellul, M., Janowitz, T., Burnet, N. (May 2014) Panhypopituitarism secondary to a solitary hypothalamic metastasis. BMJ Case Rep, 2014. ISSN 1757-790x
Enikolopov, G., Guillermier, C., Wang, M., Trakimas, L., Steinhauser, M. L., Lechene, C. (November 2014) Brain stem cell division and maintenance studied using multi-isotope imaging mass spectrometry (MIMS). Surface and Interface Analysis, 46 (S1). pp. 140-143. ISSN 01422421
Erben, U., Loddenkemper, C., Doerfel, K., Spieckermann, S., Haller, D., Heimesaat, M. M., Zeitz, M., Siegmund, B., Kuhl, A. A. (July 2014) A guide to histomorphological evaluation of intestinal inflammation in mouse models. Int J Clin Exp Pathol, 7 (8). pp. 4557-76. ISSN 1936-2625
Erlich, Y., Williams, J. B., Glazer, D., Yocum, K., Farahany, N., Olson, M., Narayanan, A., Stein, L. D., Witkowski, J. A., Kain, R. C. (November 2014) Redefining genomic privacy: trust and empowerment. Plos Biology, 12 (11). e1001983. ISSN 1544-9173
Ermakova, Y. G., Bilan, D. S., Matlashov, M. E., Mishina, N. M., Markvicheva, K. N., Subach, O. M., Subach, F. V., Bogeski, I., Hoth, M., Enikolopov, G., Belousov, V. V. (October 2014) Red fluorescent genetically encoded indicator for intracellular hydrogen peroxide. Nature Communications, 5. p. 5222. ISSN 2041-1723
Espana-Agusti, J., Tuveson, D. A., Adams, D. J., Matakidou, A. (October 2014) A minimally invasive, lentiviral based method for the rapid and sustained genetic manipulation of mouse tubular epithelial cells. BJU International, 114 (Supple). p. 11. ISSN 1464-4096
Eveland, A. L., Goldshmidt, A., Pautler, M., Morohashi, K., Liseron-Monfils, C., Lewis, M. W., Kumari, S., Hiraga, S., Yang, F., Unger-Wallace, E., Olson, A., Hake, S., Vollbrecht, E., Grotewold, E., Ware, D., Jackson, D. (2014) Regulatory modules controlling maize inflorescence architecture. Genome Research, 24 (3). pp. 431-443. ISSN 1088-9051
Ewald, A. J., Egeblad, M. (July 2014) Cancer: Sugar-coated cell signalling. Nature, 511 (7509). pp. 298-9. ISSN 0028-0836
Faehnle, C. R., Elkayam, E., Haase, A. D., Hannon, G. J., Joshua-Tor, L. (January 2014) Slicer and the Argonautes. Biophysical Journal, 106 (2; Sup). 455A-455A. ISSN 0006-3495
Faehnle, C. R., Walleshauser, J., Joshua-Tor, L. (October 2014) Mechanism of Dis3l2 substrate recognition in the Lin28-let-7 pathway. Nature, 514 (7521). pp. 252-6. ISSN 0028-0836 (Public Dataset)
Fagegaltier, D., Konig, A., Gordon, A., Lai, E. C., Gingeras, T. R., Hannon, G. J., Shcherbata, H. R. (July 2014) A Genome-Wide Survey of Sexually Dimorphic Expression of Drosophila miRNAs Identifies the Steroid Hormone-Induced miRNA let-7 as a Regulator of Sexual Identity. Genetics, 198 (2). pp. 647-668. ISSN 0016-6731
Fang, Han (January 2014) "Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions". Journal Club. (Unpublished)
Fang, Han (April 2014) "Towards Better Understanding of Artifacts in Variant Calling from High-Coverage Samples". Journal Club. (Unpublished)
Fang, Han, Lyon, Gholson J. (January 2014) Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Journal Club. (Unpublished)
Fang, Han, Lyon, Gholson J. (November 2014) Reducing INDEL calling errors in whole genome and exome sequencing data. In: Cold Spring Harbor Laboratory Personal Genomes Meeting, November 2014, Cold Spring Harbor, NY . (Unpublished)
Fang, Han, Lyon, Gholson J. (November 2014) Reducing INDEL calling errors in whole genome and exome sequencing data. In: Cold Spring Harbor Laboratory Biological Data Science Meeting, November 8, 2014, Cold Spring Harbor, NY. (Unpublished)
Fang, Han, Lyon, Gholson J. (October 2014) Reducing INDEL calling errors in whole-genome and exome sequencing. In: 64th Annual Meeting of the American Society of Human Genetics (ASHG), October 2014, San Diego, California. (Unpublished)
Fang, Han, Lyon, Gholson J. (November 2014) Whole genome analysis of an extended pedigree with Prader-Willi Syndrome, Hereditary Hemochromatosis, Familial Dysautonomia, Tourette Syndrome and other illnesses. In: Cold Spring Harbor Laboratory Personal Genomes Meeting, November 2014, Cold Spring Harbor, NY. (Unpublished)
Fang, Han, Lyon, Gholson J. (September 2014) Genetic influences on translation in yeast. [Teaching Resource] (Unpublished)
Fang, Han, Wu, Yiyang, Narzisi, G., O'Rawe, Jason, Jimenez Barron, Laura, Rosenbaum, J., Ronemus, M., Iossifov, I., Schatz, M. C., Lyon, Gholson J. (2014) Reducing INDEL calling errors in whole genome and exome sequencing data. Genome Med, 6 (10). p. 89.
Farid, M., Ahn, L., Brohl, A., Cioffi, A., Maki, R. G. (2014) Consumptive coagulopathy in angiosarcoma: a recurrent phenomenon? Sarcoma, 2014. p. 617102. ISSN 1357-714X (Print)1357-714X (Linking)
Feigin, M. E., Akshinthala, S. D., Araki, K., Rosenberg, A. Z., Muthuswamy, L. B., Martin, B., Lehmann, B. D., Berman, H. K., Pietenpol, J. A., Cardiff, R. D., Muthuswamy, S. K. (March 2014) Mislocalization of the cell polarity protein Scribble promotes mammary tumorigenesis and is associated with basal breast cancer. Cancer Research, 74 (11). pp. 3180-3194. ISSN 0008-5472
Feigin, M. E., Xue, B., Hammell, M. C., Muthuswamy, S. K. (March 2014) G-protein-coupled receptor GPR161 is overexpressed in breast cancer and is a promoter of cell proliferation and invasion. Proceedings of the National Academy of Sciences of the United States of America, 111 (11). pp. 4191-6. ISSN 0027-8424
Fein, MR, Wysocki, RW, Egeblad, M (January 2014) Cancer in the spotlight: Using intravital imaging in cancer research. In: Advances in Intravital Microscopy: From Basic to Clinical Research. Springer Netherlands, pp. 105-123. ISBN 9789401793605
Fenno, L. E., Mattis, J., Ramakrishnan, C., Hyun, M., Lee, S. Y., He, M., Tucciarone, J., Selimbeyoglu, A., Berndt, A., Grosenick, L., Zalocusky, K. A., Bernstein, H., Swanson, H., Perry, C., Diester, I., Boyce, F. M., Bass, C. E., Neve, R., Huang, Z. J., Deisseroth, K. (June 2014) Targeting cells with single vectors using multiple-feature Boolean logic. Nature Methods, 11 (7). pp. 763-772. ISSN 15487091 (ISSN)
Fink, A. J. P., Croce, K. R., Huang, Z. J., Abbott, L. F., Jessell, T. M., Azim, E. (2014) Presynaptic inhibition of spinal sensory feedback ensures smooth movement. Nature, 508 (7498). pp. 43-48. ISSN 14764687 (ISSN)
Ford, H. E., Marshall, A., Bridgewater, J. A., Janowitz, T., Coxon, F. Y., Wadsley, J., Mansoor, W., Fyfe, D., Madhusudan, S., Middleton, G. W., Swinson, D., Falk, S., Chau, I., Cunningham, D., Kareclas, P., Cook, N., Blazeby, J. M., Dunn, J. A. (January 2014) Docetaxel versus active symptom control for refractory oesophagogastric adenocarcinoma (COUGAR-02): an open-label, phase 3 randomised controlled trial. Lancet Oncol, 15 (1). pp. 78-86. ISSN 1470-2045
Forest, A. R. R., Kawaji, H., Rehli, M., Baillie, J. K., De Hoon, M. J. L., Haberle, V., Lassmann, T., Kulakovskiy, I. V., Lizio, M., Itoh, M., Andersson, R., Mungall, C. J., Meehan, T. F., Schmeier, S., Bertin, N., Jørgensen, M., Dimont, E., Arner, E., Schmidl, C., Schaefer, U., Medvedeva, Y. A., Plessy, C., Vitezic, M., Severin, J., Semple, C. A., Ishizu, Y., Young, R. S., Francescatto, M., Altschuler, I. A., Albanese, D., Altschule, G. M., Arakawa, T., Archer, J. A. C., Arner, P., Babina, M., Rennie, S., Balwierz, P. J., Beckhouse, A. G., Pradhan-Bhatt, S., Blake, J. A., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Burroughs, A. M., Califano, A., Cannistraci, C. V., Carbajo, D., Chen, Y., Chierici, M., Ciani, Y., Clevers, H. C., Dalla, E., Davis, C. A., Detmar, M., Diehl, A. D., Dohi, T., Drabløs, F., Edge, A. S. B., Edinger, M., Ekwall, K., Endoh, M., Enomoto, H., Fagiolini, M., Fairbairn, L., Fang, H., Farach-Carson, M. C., Faulkner, G. J., Favorov, A. V., Fisher, M. E., Frith, M. C., Fujita, R., Fukuda, S., Furlanello, C., Furuno, M., Furusawa, J. I., Geijtenbeek, T. B., Gibson, A. P., Gingeras, T., Goldowitz, D., Gough, J., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Harbers, M., Harshbarger, J., Hasegawa, A., Hasegawa, Y., Hashimoto, T., Herlyn, M., Hitchens, K. J., Sui, S. J. H., Hofmann, O. M., Hoof, I., Hori, F., Huminiecki, L. (March 2014) A promoter-level mammalian expression atlas. Nature, 507 (7493). pp. 462-470. ISSN 14764687
Fortunato, S. A. V., Adamski, M., Ramos, O. M., Leininger, S., Liu, J., Ferrier, D. E. K., Adamska, M. (October 2014) Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature, 514 (7524). pp. 620-623. ISSN 00280836
Freedman, A. H., Gronau, I., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., Lorente-Galdos, B., Beale, H., Ramirez, O., Hormozdiari, F., Alkan, C., Vila, C., Squire, K., Geffen, E., Kusak, J., Boyko, A. R., Parker, H. G., Lee, C., Tadigotla, V., Siepel, A., Bustamante, C. D., Harkins, T. T., Nelson, S. F., Ostrander, E. A., Marques-Bonet, T., Wayne, R. K., Novembre, J. (January 2014) Genome sequencing highlights the dynamic early history of dogs. PLoS Genetics, 10 (1). e1004016. ISSN 15537390 (ISSN)
Fu, Y., Tucciarone, J. M., Espinosa, J. S., Sheng, N., Darcy, D. P., Nicoll, R. A., Huang, Z. J., Stryker, M. P. (March 2014) A cortical circuit for gain control by behavioral state. Cell, 156 (6). pp. 1139-52. ISSN 0092-8674
Hiro Furukawa (February 2014) Phenylethanolamine-based NMDA receptor antagonists. United States Patent 8648198. .
Galluzzi, L., Vacchelli, E., Bravo-San Pedro, J., Buque, A., Senovilla, L., Baracco, E. E., Bloy, N., Castoldi, F., Abastado, J., Agostinis, P., Apte, R. N., Aranda, F., Ayyoub, M., Beckhove, P., Blay, J., Bracci, L., Caignard, A., Castelli, C., Cavallo, F., Celis, E., Cerundolo, V., Clayton, A., Colombo, M. P., Coussens, L., Dhodapkar, M. V., Eggermont, A. M., Fearon, D. T., Fridman, W. H., Fucikova, J., Gabrilovich, D. I., Galon, J., Garg, A., Ghiringhelli, F., Giaccone, G., Gilboa, E., Gnjatic, S., Hoos, A., Hosmalin, A., Jager, D., Kalinski, P., Karre, K., Kepp, O., Kiessling, R., Kirkwood, J. M., Klein, E., Knuth, A., Lewis, C. E., Liblau, R., Lotze, M. T., Lugli, E., Mach, J., Mattei, F., Mavilio, D., Melero, I., Melief, C. J., Mittendorf, E. A., Moretta, L., Odunsi, A., Okada, H., Palucka, A. K., Peter, M. E., Pienta, K. J., Porgador, A., Prendergast, G. C., Rabinovich, G. A., Restifo, N. P., Rizvi, N., Sautes-Fridman, C., Schreiber, H., Seliger, B., Shiku, H., Silva-Santos, B., Smyth, M. J., Speiser, D. E., Spisek, R., Srivastava, P. K., Talmadge, J. E., Tartour, E., Van Der Burg, S. H., Van Den Eynde, B. J., Vile, R., Wagner, H., Weber, J. S., Whiteside, T. L., Wolchok, J. D., Zitvogel, L., Zou, W., Kroemer, G. (December 2014) Classification of current anticancer immunotherapies. Oncotarget, 5 (24). ISSN 1949-2553
Ganapathy, G., Howard, J. T., Ward, J. M., Li, J., Li, B., Li, Y., Xiong, Y., Zhang, Y., Zhou, S., Schwartz, D. C., Schatz, M., Aboukhalil, R., Fedrigo, O., Bukovnik, L., Wang, T., Wray, G., Rasolonjatovo, I., Winer, R., Knight, J. R., Koren, S., Warren, W. C., Zhang, G., Phillippy, A. M., Jarvis, E. D. (July 2014) High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience, 3. p. 11. ISSN 2047-217x
Gann, Alexander, Beggs, Jean (July 2014) Noreen Elizabeth Murray CBE. 26 February 1935 — 12 May 2011. Biographical Memoirs of Fellows of the Royal Society, 60. pp. 349-374.
Garafola, Craig S., Henn, Fritz A. (October 2014) A change in hippocampal protocadherin gamma expression in the learned helpless rat. Brain Research, 1593. pp. 55-64. ISSN 0006-8993
Gerstein, M. B., Rozowsky, J., Yan, K. K., Wang, D., Cheng, C., Brown, J. B., Davis, C. A., Hillier, L., Sisu, C., Li, J. J., Pei, B., Harmanci, A. O., Duff, M. O., Djebali, S., Alexander, R. P., Alver, B. H., Auerbach, R., Bell, K., Bickel, P. J., Boeck, M. E., Boley, N. P., Booth, B. W., Cherbas, L., Cherbas, P., Di, C., Dobin, A., Drenkow, J., Ewing, B., Fang, G., Fastuca, M., Feingold, E. A., Frankish, A., Gao, G., Good, P. J., Guigo, R., Hammonds, A., Harrow, J., Hoskins, R. A., Howald, C., Hu, L., Huang, H., Hubbard, T. J., Huynh, C., Jha, S., Kasper, D., Kato, M., Kaufman, T. C., Kitchen, R. R., Ladewig, E., Lagarde, J., Lai, E., Leng, J., Lu, Z., MacCoss, M., May, G., McWhirter, R., Merrihew, G., Miller, D. M., Mortazavi, A., Murad, R., Oliver, B., Olson, S., Park, P. J., Pazin, M. J., Perrimon, N., Pervouchine, D., Reinke, V., Reymond, A., Robinson, G., Samsonova, A., Saunders, G. I., Schlesinger, F., Sethi, A., Slack, F. J., Spencer, W. C., Stoiber, M. H., Strasbourger, P., Tanzer, A., Thompson, O. A., Wan, K. H., Wang, G., Wang, H., Watkins, K. L., Wen, J., Wen, K., Xue, C., Yang, L., Yip, K., Zaleski, C., Zhang, Y., Zheng, H., Brenner, S. E., Graveley, B. R., Celniker, S. E., Gingeras, T. R., Waterston, R. (August 2014) Comparative analysis of the transcriptome across distant species. Nature, 512 (7515). pp. 445-8. ISSN 0028-0836
Gholami, S, Chen, C-H, Gao, S, Lou, E, Fujisawa, S, Carson, J, Nnoli, JE, Chou, T-C, Bromberg, J, Fong, Y (July 2014) Role of MAPK in oncolytic herpes viral therapy in triple-negative breast cancer. Cancer Gene Therapy, 21 (7). pp. 283-289. ISSN 0929-1903
Gholami, Sepideh, Chen, Chun-Hao, Lou, Emil, Belin, Laurence J, Fujisawa, Sho, Longo, Valerie A, Chen, Nanhai G, Gönen, Mithat, Zanzonico, Pat B, Szalay, Aladar A, Fong, Yuman (February 2014) Vaccinia virus GLV-1h153 in combination with 131I shows increased efficiency in treating triple-negative breast cancer. The FASEB Journal, 28 (2). pp. 676-682. ISSN 0892-6638
Gholami, Sepideh, Marano, Andrew, Chen, Nanhai G, Aguilar, Richard J, Frentzen, Alexa, Chen, Chun-Hao, Lou, Emil, Fujisawa, Sho, Eveno, Clarisse, Belin, Laurence, Zanzonico, Pat, Szalay, Aladar, Fong, Yuman (December 2014) A novel vaccinia virus with dual oncolytic and anti-angiogenic therapeutic effects against triple-negative breast cancer. Breast Cancer Research and Treatment, 148 (3). pp. 489-499. ISSN 0167-6806
Gholson, Lyon (June 2014) "Clinical genetics of neurodevelopmental disorders". In: Mount Sinai Medical Center - Invited Speaker, June 20th 2014, Department of Genetics and Genomic Sciences and the Institute for Genomics and Multiscale Biology at the Mount Sinai Medical Center. (Unpublished)
Gillis, J., Ballouz, S., Pavlidis, P. (January 2014) Bias tradeoffs in the creation and analysis of protein-protein interaction networks. Journal of Proteomics, 100. pp. 44-54.
Gingeras, T. R. (April 2014) Conservation and novel functions of non-coding RNAs. Prion, 8 (Supple). pp. 8-9. ISSN 1933-68961933-690X
Glessner, J. T., Bick, A. G., Ito, K., Homsy, J. G., Rodriguez-Murillo, L., Fromer, M., Mazaika, E., Vardarajan, B., Italia, M., Leipzig, J., DePalma, S. R., Golhar, R., Sanders, S. J., Yamrom, B., Ronemus, M., Iossifov, I., Willsey, A. J., State, M. W., Kaltman, J. R., White, P. S., Shen, Y., Warburton, D., Brueckner, M., Seidman, C., Goldmuntz, E., Gelb, B. D., Lifton, R., Seidman, J., Hakonarson, H., Chung, W. K. (October 2014) Increased frequency of de novo copy number variants in congenital heart disease by integrative analysis of single nucleotide polymorphism array and exome sequence data. Circulation Research, 115 (10). pp. 884-96. ISSN 0009-7330
Goh, W. S. S., Seah, J. W. E., Harrison, E. J., Chen, C., Hammell, C. M., Hannon, G. J. (April 2014) A genome-wide RNAi screen identifies factors required for distinct stages of C-elegans piRNA biogenesis. Genes & Development, 28 (7). pp. 797-807. ISSN 0890-9369
Golding, Bruno, Pouchelon, Gabrielle, Bellone, Camilla, Murthy, Sahana, Di Nardo, Ariel A, Govindan, Subashika, Ogawa, Masahuro, Shimogori, Tomomi, Lüscher, Christian, Dayer, Alexandre, Jabaudon, Denis (March 2014) Retinal input directs the recruitment of inhibitory interneurons into thalamic visual circuits. Neuron, 81 (5). pp. 1057-1069. ISSN 0896-6273
Grand, R. S., Martienssen, R., O'Sullivan, J. M. (May 2014) Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe. Mitochondrion, 17. pp. 141-9. ISSN 1567-7249
Grand, R. S., Pichugina, T., Gehlen, L. R., Jones, M. B., Tsai, P., Allison, J. R., Martienssen, R., O'Sullivan, J. M. (October 2014) Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure. Nucleic Acids Research, 42 (20). pp. 12585-12599. ISSN 0305-1048
Grange, P., Bohland, J. W., Okaty, B. W., Sugino, K., Bokil, H., Nelson, S. B., Ng, L., Hawrylycz, M., Mitra, P. P. (April 2014) Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5397-5402. ISSN 0027-8424
Grativol, C., Regulski, M., Bertalan, M., McCombie, W. R., da Silva, F. R., Zerlotini Neto, A., Vicentini, R., Farinelli, L., Hemerly, A. S., Martienssen, R. A., Ferreira, P. C. G. (July 2014) Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum. Plant Journal, 79 (1). pp. 162-172. ISSN 09607412
Grover, M. P., Ballouz, S., Mohanasundaram, K. A., George, R. A., H Sherman, C. D., Crowley, T. M., Wouters, M. A. (2014) Identification of novel therapeutics for complex diseases from genome-wide association data. BMC Medical Genomics, 7 (SUPPL.). ISSN 17558794 (ISSN)
Hangya, B., Pi, H. J., Kvitsiani, D., Ranade, S. P., Kepecs, A. (February 2014) From circuit motifs to computations: mapping the behavioral repertoire of cortical interneurons. Current Opinion in Neurobiology, 26c. pp. 117-124. ISSN 0959-4388
Hasegawa, Y., Tang, D., Takahashi, N., Hayashizaki, Y., Forrest, A. R., Suzuki, H., FANTOM Consortium (2014) CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes. Sci Rep, 4. p. 5228. ISSN 2045-2322
Haspot, F., Li, H. W., Lucas, C. L., Fehr, T., Beyaz, S., Sykes, M. (January 2014) Allospecific rejection of MHC class I-deficient bone marrow by CD8 T cells. Am J Transplant, 14 (1). pp. 49-58. ISSN 1600-6143 (Electronic)1600-6135 (Linking)
Heard, E., Martienssen, R. A. (March 2014) Transgenerational Epigenetic Inheritance: Myths and Mechanisms. Cell, 157 (1). pp. 95-109. ISSN 0092-8674
Henderson, Margaret, Pinskiy, Vadim, Tolpygo, Alexander, Savoia, Stephen, Grange, Pascal, Mitra, Partha (October 2014) Automated placement of stereotactic injections using a laser scan of the skull. (Submitted)
Herridge, R. P., Day, R. C., Macknight, R. C. (September 2014) The role of the MCM2-7 helicase complex during Arabidopsis seed development. Plant Molecular Biology, 86 (1-2). pp. 69-84. ISSN 01674412
Hettmer, S., Li, Z., Billin, A. N., Barr, F. G., Cornelison, D. D., Ehrlich, A. R., Guttridge, D. C., Hayes-Jordan, A., Helman, L. J., Houghton, P. J., Khan, J., Langenau, D. M., Linardic, C. M., Pal, R., Partridge, T. A., Pavlath, G. K., Rota, R., Schafer, B. W., Shipley, J., Stillman, B., Wexler, L. H., Wagers, A. J., Keller, C. (November 2014) Rhabdomyosarcoma: Current Challenges and Their Implications for Developing Therapies. Cold Spring Harbor Perspectives in Medicine, 4 (11). ISSN 19430264
Hilgert, U., McKay, S., Ghiban, C., Khalfan, M., Micklos, D., Williams, J. (July 2014) DNA Subway: Making genome analysis egalitarian. ACM International Conference Proceeding Series . Association for Computing Machinery, Article number 70. ISBN 978-145032893-7
Hohmann, A. F., Vakoc, C. R. (June 2014) A rationale to target the SWI/SNF complex for cancer therapy. Trends in Genetics, 30 (8). pp. 356-363. ISSN 01689525
Holembowski, L., Kramer, D., Riedel, D., Sordella, R., Nemajerova, A., Dobbelstein, M., Moll, U. M. (March 2014) Tap73 is essential for germ cell adhesion and maturation in testis. Journal of Cell Biology, 204 (7). pp. 1173-1190. ISSN 15408140
Huang, C. H., Lujambio, A., Zuber, J., Tschaharganeh, D. F., Doran, M. G., Evans, M. J., Kitzing, T., Zhu, N., de Stanchina, E., Sawyers, C. L., Armstrong, S. A., Lewis, J. S., Sherr, C. J., Lowe, S. W. (August 2014) CDK9-mediated transcription elongation is required for MYC addiction in hepatocellular carcinoma. Genes and Development, 28 (16). pp. 1800-1814. ISSN 15495477 (ISSN)
Huang, Z. J. (September 2014) Toward a Genetic Dissection of Cortical Circuits in the Mouse. Neuron, 83 (6). pp. 1284-1302. ISSN 0896-6273
Huang, Z. J., Taniguchi, H., He, M., Kuhlman, S. (February 2014) Cre-dependent adeno-associated virus preparation and delivery for labeling neurons in the mouse brain. Cold Spring Harb Protoc, 2014 (2). pp. 190-4. ISSN 1559-6095 (Electronic)1559-6095 (Linking)
Huang, Z. J., Taniguchi, H., He, M., Kuhlman, S. (February 2014) Genetic labeling of neurons in mouse brain. Cold Spring Harb Protoc, 2014 (2). pp. 150-60. ISSN 1559-6095 (Electronic)1559-6095 (Linking)
Iossifov, I., O'Roak, B. J., Sanders, S. J., Ronemus, M., Krumm, N., Levy, D., Stessman, H. A., Witherspoon, K. T., Vives, L., Patterson, K. E., Smith, J. D., Paeper, B., Nickerson, D. A., Dea, J., Dong, S., Gonzalez, L. E., Mandell, J. D., Mane, S. M., Murtha, M. T., Sullivan, C. A., Walker, M. F., Waqar, Z., Wei, L., Willsey, A. J., Yamrom, B., Lee, Y. H., Grabowska, E., Dalkic, E., Wang, Z., Marks, S., Andrews, P., Leotta, A., Kendall, J., Hakker, I., Rosenbaum, J., Ma, B., Rodgers, L., Troge, J., Narzisi, G., Yoon, S., Schatz, M. C., Ye, K., McCombie, W. R., Shendure, J., Eichler, E. E., State, M. W., Wigler, M. (November 2014) The contribution of de novo coding mutations to autism spectrum disorder. Nature, 515 (7526). pp. 216-221. ISSN 0028-0836
Jacob, Y., Bergamin, E., Donoghue, M. T., Mongeon, V., LeBlanc, C., Voigt, P., Underwood, C. J., Brunzelle, J. S., Michaels, S. D., Reinberg, D., Couture, J. F., Martienssen, R. A. (March 2014) Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Science, 343 (6176). pp. 1249-53. ISSN 0036-8075
Jang, Woo-Sik, Koo, Peter, Bryson, Kyle, Narayanan, Suresh, Sandy, Alec, Russell, Thomas P., Mochrie, Simon G. (2014) Dynamics of Cadmium Sulfide Nanoparticles within Polystyrene Melts. Macromolecules, 47 (18). pp. 6483-6490. ISSN 0024-9297
Jaramillo, S., Borges, K., Zador, A. M. (April 2014) Auditory Thalamus and Auditory Cortex Are Equally Modulated by Context during Flexible Categorization of Sounds. Journal of Neuroscience, 34 (15). pp. 5291-301. ISSN 0270-6474
Jaramillo, S., Zador, A. M. (September 2014) Mice and rats achieve similar levels of performance in an adaptive decision-making task. Frontiers in Systems Neuroscience, 8. Article no.173. ISSN 1662-5137
Jensen, M. A., Wilkinson, J. E., Krainer, A. R. (January 2014) Splicing factor SRSF6 promotes hyperplasia of sensitized skin. Nature Structural and Molecular Biology, 21. pp. 189-197. ISSN 15459993 (ISSN)
Jespersen, A., Tajima, N., Fernandez-Cuervo, G., Garnier-Amblard, E. C., Furukawa, H. (January 2014) Structural Insights into Competitive Antagonism in NMDA Receptors. Neuron, 81 (2). pp. 366-78. ISSN 0896-6273 (Public Dataset)
Jimenez Barron, Laura, Lyon, Gholson J. (November 2014) Genome Wide Variant Analysis of families with Autism Spectrum Disorder (ASD) using an Integrative Bioinformatics Pipeline. In: Cold Spring Harbor Laboratory Personal Genomes Meeting , November 2014, Cold Spring Harbor, NY . (Unpublished)
Jimenez Barron, Laura, Lyon, Gholson J. (June 2014) "Variant Analysis of Simplex Autism Families". In: CSHL Woodbury Genomic In-House Seminar, June 16th 2014, CSHL Woodbury Genome Center. (Unpublished)
Jimenez-Barron, Laura (May 2014) "Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources". Journal Club. (Unpublished)
Jun, Kyong-Hwa, Gholami, Sepideh, Song, Tae-Jin, Au, Joyce, Haddad, Dana, Carson, Joshua, Chen, Chun-Hao, Mojica, Kelly, Zanzonico, Pat, Chen, Nanhai G, Zhang, Qian, Szalay, Aladar, Fong, Yuman (January 2014) A novel oncolytic viral therapy and imaging technique for gastric cancer using a genetically engineered vaccinia virus carrying the human sodium iodide symporter. Journal of Experimental and Clinical Cancer Research, 33 (1). p. 2. ISSN 0392-9078
Karakas, E., Furukawa, H. (May 2014) Crystal structure of a heterotetrameric NMDA receptor ion channel. Science, 344 (6187). pp. 992-7. ISSN 1095-9203 (Electronic)0036-8075 (Linking) (Public Dataset)
Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (February 2014) Cortical activity in the null space: permitting preparation without movement. Nature Neuroscience, 17 (3). pp. 440-448. ISSN 1097-6256
Kawaoka, S., Katsuma, S., Tomari, Y. (2014) Making piRNAs in vitro. Methods in Molecular Biology, 1093. pp. 35-46. ISSN 10643745 (ISSN); 9781627036931 (ISBN)
Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R., Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J., Weng, Z., White, K. P., Hardison, R. C. (August 2014) Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America, 111 (33). E3366-E3366. ISSN 10916490 (ISSN)
Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R., Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J. A., Weng, Z. P., White, K. P., Hardison, R. C. (April 2014) Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America, 111 (17). pp. 6131-6138. ISSN 0027-8424
Kendall, J., Krasnitz, A. (July 2014) Computational methods for DNA copy-number analysis of tumors. Methods in Molecular Biology, 1176. pp. 243-59. ISSN 1940-6029 (Electronic)1064-3745 (Linking)
Kepecs, A., Fishell, G. (January 2014) Interneuron cell types are fit to function. Nature, 505 (7483). pp. 318-326. ISSN 0028-0836
Kersey, P. J., Allen, J. E., Christensen, M., Davis, P., Falin, L. J., Grabmueller, C., Hughes, D. S., Humphrey, J., Kerhornou, A., Khobova, J., Langridge, N., McDowall, M. D., Maheswari, U., Maslen, G., Nuhn, M., Ong, C. K., Paulini, M., Pedro, H., Toneva, I., Tuli, M. A., Walts, B., Williams, G., Wilson, D., Youens-Clark, K., Monaco, M. K., Stein, J., Wei, X., Ware, D., Bolser, D. M., Howe, K. L., Kulesha, E., Lawson, D., Staines, D. M. (January 2014) Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Research, 42 (Databa). D546-52. ISSN 0305-1048
Khatri, A., Burger, P. B., Swanger, S. A., Hansen, K. B., Zimmerman, S., Karakas, E., Liotta, D. C., Furukawa, H., Snyder, J. P., Traynelis, S. F. (September 2014) Structural Determinants and Mechanism of Action of a GluN2C-selective NMDA Receptor Positive Allosteric Modulator. Mol Pharmacol, 86 (5). pp. 548-560. ISSN 0026-895x
Kinney, J. B. (July 2014) Estimation of probability densities using scale-free field theories. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 90 (1). Article no. 011301. ISSN 15502376
Kinney, J. B. (June 2014) Mutual information: a universal measure of statistical dependence. Biomedical Computation Review, 10 (2). p. 33.
Kinney, J. B., Atwal, G. S. (March 2014) Equitability, mutual information, and the maximal information coefficient. Proceedings of the National Academy of Sciences of the United States of America, 111 (9). pp. 3354-9. ISSN 0027-8424
Kinney, J. B., Atwal, G. S. (January 2014) Parametric Inference in the Large Data Limit Using Maximally Informative Models. Neural Comput, 26 (4). pp. 637-653. ISSN 0899-7667
Kinney, J. B., Atwal, G. S. (May 2014) Reply to Murrell et al.: Noise matters. Proceedings of the National Academy of Sciences of the United States of America, 111 (21). E2161. ISSN 10916490
Kinney, J. B., Atwal, G. S. (August 2014) Reply to Reshef et al.: Falsifiability or bust. Proceedings of the National Academy of Sciences of the United States of America, 111 (33). E3364. ISSN 10916490 (ISSN)
Kita, T., Osten, P., Kita, H. (December 2014) Rat subthalamic nucleus and zona incerta share extensively overlapped representations of cortical functional territories. Journal of Comparative Neurology, 522 (18). pp. 4043-56. ISSN 0021-9967
Kleinfeld, D., Mitra, P. P. (March 2014) Spectral methods for functional brain imaging. Cold Spring Harbor Protocols, 2014 (3). pp. 248-62. ISSN 1559-6095
Knott, S. R., Maceli, A. R., Erard, N., Chang, K., Marran, K., Zhou, X., Gordon, A., El Demerdash, O., Wagenblast, E., Kim, S., Fellmann, C., Hannon, G. J. (December 2014) A Computational Algorithm to Predict shRNA Potency. Mol Cell, 56 (6). pp. 796-807. ISSN 1097-2765
Kojima, Y., Tam, O. H., Tam, P. P. (June 2014) Timing of developmental events in the early mouse embryo. Seminars in Cell & Developmental Biology, 34. pp. 65-75. ISSN 1084-9521
Kojima, Yoji, Kaufman-Francis, Keren, Studdert, Joshua B, Steiner, Kirsten A, Power, Melinda D, Loebel, David AF, Jones, Vanessa, Hor, Angelyn, de Alencastro, Gustavo, Logan, Grant J, Teber, Erdahl T, Tam, Oliver H, Stutz, Michael D, Alexander, Ian E, Pickett, Hilda A, Tam, Patrick PL (January 2014) The transcriptional and functional properties of mouse epiblast stem cells resemble the anterior primitive streak. Cell Stem Cell, 14 (1). pp. 107-120. ISSN 1934-5909
Kota, Prashant, Lyon, Gholson J. (January 2014) "The N-Terminal Methionine of Cellular Proteins as a Degradation Signal". Journal Club. (Unpublished)
Kovalenko, I. L., Galyamina, A. G., Smagin, D. A., Michurina, T. V., Kudryavtseva, N. N., Enikolopov, G. (2014) Extended effect of chronic social defeat stress in childhood on behaviors in adulthood. PLoS One, 9 (3). e91762. ISSN 1932-6203
Krishnan, N., Koveal, D., Miller, D. H., Xue, B., Akshinthala, S. D., Kragelj, J., Jensen, M. R., Gauss, C. M., Page, R., Blackledge, M., Muthuswamy, S. K., Peti, W., Tonks, N. K. (May 2014) Targeting the disordered C terminus of PTP1B with an allosteric inhibitor. Nature Chemical Biology, 10 (7). pp. 558-566. ISSN 15524450
Kultti, A., Zhao, C. M., Singha, N. C., Zimmerman, S., Osgood, R. J., Symons, R., Jiang, P., Li, X. M., Thompson, C. B., Infante, J. R., Jacobetz, M. A., Tuveson, D. A., Frost, G. I., Shepard, H. M., Huang, Z. D. (July 2014) Accumulation of Extracellular Hyaluronan by Hyaluronan Synthase 3 Promotes Tumor Growth and Modulates the Pancreatic Cancer Microenvironment. Biomed Research International. p. 15. ISSN 2314-6133
Kultti, A., Zhao, C. M., Zimmerman, S., Osgood, R. J., Chen, Y. L., Symons, R., Jiang, P., Thompson, C. B., Tuveson, D. A., Frost, G. I., Shepard, H. M., Huang, Z. D. (October 2014) Extracellular hyaluronan accumulation by hyaluronan synthase 3 promotes pancreatic cancer growth and modulates tumor microenvironment via epithelial-mesenchymal transition. Cancer Research, 74 (19). ISSN 0008-5472
Kuscu, C., Zaratiegui, M., Kim, H. S., Wah, D. A., Martienssen, R. A., Schalch, T., Joshua-Tor, L. (January 2014) CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing. Proceedings of the National Academy of Sciences of the United States of America, 111 (5). pp. 1795-1800. ISSN 0027-8424 (Public Dataset)
Kuzin, B. A., Nikitina, E. A., Cherezov, R. O., Vorontsova, J. E., Slezinger, M. S., Zatsepina, O. G., Simonova, O. B., Enikolopov, G. N., Savvateeva-Popova, E. V. (April 2014) Combination of hypomorphic mutations of the Drosophila homologues of aryl hydrocarbon receptor and nucleosome assembly protein family genes disrupts morphogenesis, memory and detoxification. PLoS ONE, 9 (4). e94975. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Labbé, D. P., Nowak, D. G., Deblois, G., Lessard, L., Giguère, V., Trotman, L. C., Tremblay, M. L. (2014) Prostate cancer genetic-susceptibility locus on chromosome 20q13 is amplified and coupled to androgen receptor-regulation in metastatic tumors. Molecular Cancer Research, 12 (2). pp. 184-189. ISSN 15417786 (ISSN)
Lacroix, B., Gizatullina, D. I., Babst, B. A., Gifford, A. N., Citovsky, V. (April 2014) AgrobacteriumT-DNA-encoded protein Atu6002 interferes with the host auxin response. Molecular Plant Pathology, 15 (3). pp. 275-283. ISSN 14646722 (ISSN)
Lak, A., Costa, G. M., Romberg, E., Koulakov, A. A., Mainen, Z. F., Kepecs, A. (September 2014) Orbitofrontal Cortex Is Required for Optimal Waiting Based on Decision Confidence. Neuron, 84 (1). pp. 190-201. ISSN 0896-6273
Law, M., Childs, K. L., Campbell, M. S., Stein, J. C., Holt, C., Panchy, N., Lei, J., Jao, D., Andorf, C. M., Lawrence, C. J., Ware, D., Shiu, S. H., Sun, Y., Jiang, N., Yandell, M. (November 2014) Automated update, revision and quality control of the Zea mays genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. ISSN 0032-0889
Lazarev, D., Miller, R. L., Dimango, E., Fu, X. D., Li, H. R., Logan, C. J., Manley, J. L. (May 2014) CFLIP expression is altered in severe corticosteroid-resistant asthma. Genomics Data, 2. pp. 99-104. ISSN 22135960
Le Thomas, A., Stuwe, E., Li, S., Du, J., Marinov, G., Rozhkov, N., Chen, Y. C., Luo, Y., Sachidanandam, R., Toth, K. F., Patel, D., Aravin, A. A. (August 2014) Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing. Genes & Development, 28 (15). pp. 1667-80. ISSN 0890-9369
Lee, Ji-Sook, Wee, Tse-Luen Erika, Brown, Claire M (April 2014) Calibration of wide-field deconvolution microscopy for quantitative fluorescence imaging. Journal of Biomolecular Techniques, 25 (1). pp. 31-40. ISSN 1524-0215
Lee, J. H., Daugharthy, E. R., Scheiman, J., Kalhor, R., Yang, J. L., Ferrante, T. C., Terry, R., Jeanty, S. S., Li, C., Amamoto, R., Peters, D. T., Turczyk, B. M., Marblestone, A. H., Inverso, S. A., Bernard, A., Mali, P., Rios, X., Aach, J., Church, G. M. (March 2014) Highly multiplexed subcellular RNA sequencing in situ. Science, 343 (6177). pp. 1360-3. ISSN 1095-9203 (Electronic)0036-8075 (Linking)
Lee, S. J., Syed, S., Enemark, E. J., Schuck, S., Stenlund, A., Ha, T., Joshua-Tor, L. (March 2014) Dynamic look at DNA unwinding by a replicative helicase. Proceedings of the National Academy of Sciences of the United States of America, 111 (9). E827-35. ISSN 0027-8424
Lemmon, Z. H., Doebley, J. F. (September 2014) Genetic Dissection of a Genomic Region with Pleiotropic Effects on Domestication Traits in Maize Reveals Multiple Linked QTL. Genetics, 198 (1). pp. 345-53. ISSN 0016-6731
Levy, D., Wigler, M. (October 2014) Facilitated sequence counting and assembly by template mutagenesis. Proceedings of the National Academy of Sciences of the United States of America, 111 (43). E4632-E4637. ISSN 0027-8424
Li, L., Eichten, S. R., Shimizu, R., Petsch, K., Yeh, C. T., Wu, W., Chettoor, A. M., Givan, S. A., Cole, R. A., Fowler, J. E., Evans, M. M., Scanlon, M. J., Yu, J., Schnable, P. S., Timmermans, M. C., Springer, N. M., Muehlbauer, G. J. (February 2014) Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology, 15 (2). R40. ISSN 1465-6906
Li, L., Zhang, Q., Pedmale, U. V., Nito, K., Fu, W., Lin, L., Hazen, S. P., Chory, J. (October 2014) PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade. Mol Plant, 7 (10). pp. 1582-5. ISSN 1674-2052
Li, L. M., Menon, D. K., Janowitz, T. (January 2014) Cross-sectional analysis of data from the U.S. clinical trials database reveals poor translational clinical trial effort for traumatic brain injury, compared with stroke. PLoS One, 9 (1). e84336. ISSN 1932-6203
Li, W., Mills, A. A. (May 2014) Packing for the journey: CHD5 remodels the genome. Cell Cycle, 13 (12). ISSN 1551-4005 (Electronic)1551-4005 (Linking)
Li, W., Wu, J., Kim, S. Y., Zhao, M., Hearn, S. A., Zhang, M. Q., Meistrich, M. L., Mills, A. A. (May 2014) Chd5 orchestrates chromatin remodelling during sperm development. Nature Communications, 5. p. 3812. ISSN 20411723
Li, Wanhe, Mills, Alea A. (August 2014) Architects of the genome: CHD dysfunction in cancer, developmental disorders and neurological syndromes. Epigenomics, 6 (4). pp. 381-95. ISSN 1750-192x
Li, X., Yu, K., Zhang, Z., Sun, W., Yang, Z., Feng, J., Chen, X., Liu, C. H., Wang, H., Guo, Y. P., He, J. (March 2014) Cholecystokinin from the entorhinal cortex enables neural plasticity in the auditory cortex. Cell Research, 24 (3). pp. 307-330. ISSN 10010602 (ISSN)
Liberatore, Katie (April 2014) Investigating the roles of gene dosage and stem cell maintenance in the regulation of plant shoot and inflorescence architecture. PhD thesis, Cold Spring Harbor Laboratory.
Lin, S., Lin, Y., Nery, J. R., Urich, M. A., Breschi, A., Davis, C. A., Dobin, A., Zaleski, C., Beer, M. A., Chapman, W. C., Gingeras, T. R., Ecker, J. R., Snyder, M. P. (November 2014) Comparison of the transcriptional landscapes between human and mouse tissues. Proceedings of the National Academy of Sciences of the United States of America, 111 (48). pp. 17224-17229. ISSN 0027-8424
Lito, P., Saborowski, A., Yue, J., Solomon, M., Joseph, E., Gadal, S., Saborowski, M., Kastenhuber, E., Fellmann, C., Ohara, K., Morikami, K., Miura, T., Lukacs, C., Ishii, N., Lowe, S., Rosen, N. (April 2014) Disruption of CRAF-Mediated MEK Activation Is Required for Effective MEK Inhibition in KRAS Mutant Tumors. Cancer Cell, 25 (5). pp. 697-710. ISSN 1878-3686 (Electronic)1535-6108 (Linking)
Lito, P., Saborowski, A., Yue, J. Y., Solomon, M., Joseph, E., Fellman, C., Ohara, K., Morikami, K., Miura, T., Lucas, C., Ishii, N., Lowe, S., Rosen, N. (October 2014) Disruption of CRAF-mediated MEK activation is required for effective MEK inhibition in KRAS mutant tumors. Cancer Research, 74 (19). ISSN 0008-5472
Livneh, U., Zador, A. (August 2014) Sensory systems: Sound processing takes motor control. Nature, 513 (7517). pp. 180-181. ISSN 0028-0836
Lu, B. Y., Shao, L. S., Feng, S. X., Wang, T., Zhong, Y. (January 2014) The beta-alanyl-monoamine synthase ebony is regulated by schizophrenia susceptibility gene dysbindin in Drosophila. Science China-Life Sciences, 57 (1). pp. 46-51. ISSN 1674-7305
Lu, J., Tucciarone, J., Lin, Y., Huang, Z. J. (November 2014) Input-specific maturation of synaptic dynamics of parvalbumin interneurons in primary visual cortex. Proceedings of the National Academy of Sciences of the United States of America, 111 (47). pp. 16895-16900. ISSN 0027-8424
Lu, L., Yan, H., Shyam-Sundar, V., Janowitz, T. (September 2014) Cross-sectional and longitudinal analysis of cancer vaccination trials registered on the US Clinical Trials Database demonstrates paucity of immunological trial endpoints and decline in registration since 2008. Drug Des Devel Ther, 8. pp. 1539-53. ISSN 1177-8881
Lyon, Gholson J. (June 2014) "The ARD1 Gene of Yeast Functions in the Switch between the Mitotic Cell Cycle and Alternative Developmental Pathways". Journal Club. (Unpublished)
Lyon, Gholson J. (June 2014) "ARD1 and NAT1 proteins from a complex that has N-terminal acetyltransferase activity". Journal Club. (Unpublished)
Lyon, Gholson J. (January 2014) Clinical Genomics of Neuropsychiatric Illnesses. In: Stony Brook University Division of Child and Adolescent Psychiatry, Seminar, Invited Speaker, January 2014, Stony Brook, NY. (Unpublished)
Lyon, Gholson J. (December 2014) Crystal structure of a TAF1-TAF7 complex in human transcription factor IID reveals a promoter binding module. Journal Club. (Unpublished)
Lyon, Gholson J. (January 2014) Deep Brain Stimulation, Psychiatric Genetics, and iPS cell models of disease. In: CSHL In-House Seminar Series, Jan 24th 2014, Cold Spring Harbor Laboratory . (Unpublished)
Lyon, Gholson J. (June 2014) "Genetic Complexity and Neuropsychiatric Disorders". In: Nurturing Genetics: Reflections on a Century of Scientific and Social Change - An International and Interdisciplinary Symposium, June 29th - July 2nd 2014, University of Leeds, UK. (Unpublished)
Lyon, Gholson J. (July 2014) "Genetic Research, and its Application in Today's Health Care System". [Audio]
Lyon, Gholson J. (June 2014) "Genome sequencing identifies major causes of severe intellectual disability". Journal Club. (Unpublished)
Lyon, Gholson J. (September 2014) Human Genetic Variation and the Genotype-Phenotype Problem. In: Lecture to Watson School Graduate Students , September 22, 2014, Cold Spring Harbor Laboratory. (Unpublished)
Lyon, Gholson J. (November 2014) Human Genetic Variation and the Genotype-Phenotype Problem. In: Lecture to Stony Brook University Psychology Students on "Molecular Psychology", Stony Brook University, Stony Brook, NY . (Unpublished)
Lyon, Gholson J. (December 2014) Human Genetic Variation and the Genotype-Phenotype Problem. In: Lecture to GE510: Graduate Genetics Course, December 4, 2014, Stony Brook University, Stony Brook, NY . (Unpublished)
Lyon, Gholson J. (November 2014) Human Genetics and Orphan Diseases. In: Cold Spring Harbor Laboratory In-House Symposium XXVIII, November 24 - 25, 2014, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. (Unpublished)
Lyon, Gholson J. (June 2014) "Identification and characterization of genes and mutants for an N-terminal acetyltransferase from yeast". Journal Club. (Unpublished)
Lyon, Gholson J. (June 2014) "Identification of Methionine Na-Acetyltransferase from Saccharomyces cerevisiae". Journal Club. (Unpublished)
Lyon, Gholson J. (March 2014) "Inefficient SRP interaction with a nascent chain triggers a mRNA quality control pathway". Journal Club. (Unpublished)
Lyon, Gholson J. (June 2014) "Model Peptides Reveal Specificity of Na-Acetyltransferase from Saccharomyces cerevisiae". Journal Club. (Unpublished)
Lyon, Gholson J. (June 2014) "Molecular Cloning and Sequencing of a cDNA Encoding Na-Acetyltransferase from Saccharomyces cerevisiae". Journal Club. (Unpublished)
Lyon, Gholson J. (January 2014) "N(α)-Acetylation of yeast ribosomal proteins and its effect on protein synthesis". Journal Club. (Unpublished)
Lyon, Gholson J. (March 2014) "N-Terminal Acetylation Inhibits Protein Targeting to the Endoplasmic Reticulum". Journal Club. (Unpublished)
Lyon, Gholson J. (October 2014) N-terminal acetyltransferases and Translation. In: Lecture to Stony Brook Chemical Biology Graduate Students, October 30, 2014 , Stony Brook University, Stony Brook, NY. (Unpublished)
Lyon, Gholson J. (June 2014) "NAT2, an Essential Gene Encoding Methionine Na-Acetyltransferase in the Yeast Saccharomyces cerevisiae". Journal Club. (Unpublished)
Lyon, Gholson J. (June 2014) "Na Acetylation Is Required for Normal Growth and Mating of Saccharomyces cerevisiae". Journal Club. (Unpublished)
Lyon, Gholson J. (March 2014) National Academy of Sciences Journal Summit - Invited Panelist. In: National Academy of Sciences Journal Summit, March 2014, National Academy of Sciences, Washington D.C.. (Unpublished)
Lyon, Gholson J. (June 2014) "Purification and Characterization of an Na-Acetyltransferase from Saccharomyces cerevisiae". Journal Club. (Unpublished)
Lyon, Gholson J. (April 2014) "Whole genome sequencing, clinical interpretation, and deep brain stimulation in a severely mentally ill person". In: CSHL Neuronal Circuits Meeting, April 2nd-5th 2014, Cold Spring Harbor Laboratory. (Unpublished)
Lyon, Gholson J. (January 2014) "Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing". Journal Club. (Unpublished)
Lyon, Gholson J. (June 2014) "The Yeast ARD1 Gene Product Is Required for Repression of Cryptic Mating-Type Information at the HML Locus". Journal Club. (Unpublished)
Lyon, Gholson J. (May 2014) Challenges for Clinical Implementation of Genomic Medicine. In: New York Genome Center Lecture Series, May 22nd 2014, New York Genome Center - NYC . (Unpublished)
Lyon, Gholson J. (May 2014) Challenges for Clinical Implementation of Genomic Medicine. In: Ancestry.com, May 27th 2014, Provo, Utah. (Unpublished)
Lyon, Gholson J. (July 2014) "Ogden Syndrome and the Amino-Terminal Acetylation of Proteins". In: NIGMS Medical Scientist Training Program 50th Anniversary Symposium, July 17th 2014, NIH Campus - Bethesda, Maryland. (Unpublished)
Lyon, Gholson J., Doerfel, Max, O'Rawe, Jason, Fang, Han, Jimenez Barron, Laura (2014) Human Genetics and Genomic Medicine. Cold Spring Harbor Laboratory.
Malaspinas, Anna-Sapfo, Lao, Oscar, Schroeder, Hannes, Rasmussen, Morten, Raghavan, Maanasa, Moltke, Ida, Campos, Paula F., Sagredo, Francisca Santana, Rasmussen, Simon, Gonçalves, Vanessa F., Albrechtsen, Anders, Allentoft, Morten E., Johnson, Philip L. F., Li, Mingkun, Reis, Silvia, Bernardo, Danilo V., DeGiorgio, Michael, Duggan, Ana T., Bastos, Murilo, Wang, Yong, Stenderup, Jesper, Moreno-Mayar, J. Victor, Brunak, Søren, Sicheritz-Ponten, Thomas, Hodges, Emily, Hannon, Gregory J., Orlando, Ludovic, Price, T. Douglas, Jensen, Jeffrey D., Nielsen, Rasmus, Heinemeier, Jan, Olsen, Jesper, Rodrigues-Carvalho, Claudia, Lahr, Marta Mirazón, Neves, Walter A., Kayser, Manfred, Higham, Thomas, Stoneking, Mark, Pena, Sergio D. J., Willerslev, Eske (November 2014) Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology, 24 (21). R1035-R1037. ISSN 0960-9822
Malinauskas, Tomas, Jones, E. Yvonne (December 2014) Extracellular modulators of Wnt signalling. Current Opinion in Structural Biology, 29. pp. 77-84. ISSN 0959-440X
Marcus, S., Lee, H., Schatz, M. C. (November 2014) SplitMEM: A graphical algorithm for pan-genome analysis with suffix skips. Bioinformatics, 30 (24). pp. 3476-3483. ISSN 1367-4803
Matlashov, M. E., Belousov, V. V., Enikolopov, G. (2014) How much H2O2 is produced by recombinant D-Amino acid oxidase in mammalian cells? Antioxidants and Redox Signaling, 20 (7). pp. 1039-1044. ISSN 15230864 (ISSN)
Matthews, G. M., Cluse, L., Wang, E., Roth, M., Vakoc, C., Miao, W. Y., Rusche, J., Zuber, J., Johnstone, R. W. (October 2014) RNAi-mediated depletion of histone deacetylases highlights the potential for isoform-specific inhibitors in B-cell lymphoma and acute myeloid leukemia. Cancer Research, 74 (19). ISSN 0008-5472
Mazurek, A., Park, Y., Miething, C., Wilkinson, J. E., Gillis, J., Lowe, S. W, Vakoc, C. R, Stillman, B. (June 2014) Acquired Dependence of Acute Myeloid Leukemia on the DEAD-Box RNA Helicase DDX5. Cell Reports, 7 (6). pp. 1887-1899. ISSN 2211-1247
McCandlish, D. M., Epstein, C. L., Plotkin, J. B. (May 2014) The inevitability of unconditionally deleterious substitutions during adaptation. Evolution, 68 (5). pp. 1351-64. ISSN 1558-5646 (Electronic)0014-3820 (Linking)
McCandlish, David M., Stoltzfus, Arlin (2014) Modeling evolution using the probability of fixation: history and implications. The Quarterly Review of Biology, 89 (3). pp. 225-252. ISSN 0033-57701539-7718
McCarthy, S. E., Gillis, J., Kramer, M., Lihm, J., Yoon, S., Berstein, Y., Mistry, M., Pavlidis, P., Solomon, R., Ghiban, E., Antoniou, E., Kelleher, E., O'Brien, C., Donohoe, G., Gill, M., Morris, D. W., McCombie, W. R., Corvin, A. (June 2014) De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability. Molecular Psychiatry, 19 (6). pp. 652-658. ISSN 14765578
McCarthy, S. E., McCombie, W. R., Corvin, A. (March 2014) Unlocking the Treasure Trove: From Genes to Schizophrenia Biology. Schizophrenia Bulletin, 40 (3). pp. 492-496. ISSN 0586-7614
McGinn, J., Czech, B. (2014) Small RNA library construction for high-throughput sequencing. Methods in Molecular Biology, 1093. pp. 195-208. ISSN 10643745 (ISSN); 9781627036931 (ISBN)
McGrath, Lauren M., Yu, Dongmei, Marshall, Christian, Davis, Lea K., Thiruvahindrapuram, Bhooma, Li, Bingbin, Cappi, Carolina, Geber, Gloria, Wolf, Aaron, Schroeder, Frederick A., Osiecki, Lisa, O'Dushlaine, Colm, Kirby, Andrew, Illman, Cornelia, Haddad, Stephen, Gallagher, Patience, Fagerness, Jesen A., Barr, Cathy L., Bellodi, Laura, Benarroch, Fortu, Bienvenu, O. Joseph, Black, Donald W., Bloch, Michael H. , Bruun, Ruth D., Budman, Cathy L., Camarena, Beatriz, Cath, Danielle C., Cavallini, Maria C,, Chouinard, Sylvain, Coric , Vladimir, Cullen, Bernadette, Delomre, Richard, Denys, Damiaan, Derks, Eske M., Dion, Yves, Rosario, Maria C., Eapen, Valsama, Evans, Patrick, Falkai, Peter, Fernanadez , Thomas, Garrido, Helena, Geller, Daniel, Grabe, Hans J., Grados, Marco A., Greenberg, Benjamin D., Gross-Tsur, Varda, Grunblatt, Edna, Heiman , Gary A, Hemmings, Sian M.J., Herrera, Luis D., Hounie, Ana G., Jankovic, Joseph, Kennedy, James L., King, Robert A., Kurlan, Roger, Lanzagorta, Nuria, Leboyer, Marion, Leckman, James F., Lennertz, Leonhard, Lochner , Christine, Lowe, Thomas L., Lyon, Gholson J,, Maccaiardi, Fabio, Maier, Wolfgang, McCracken, James T., McMahon, William, Murphy, Dennis L., Naarden, Allan L., Neale, Benjamin M., Nurmi, Erika, Pakstis , Andrew J,, Pato, Michele T., Pato, Carlos N., Piacentini, John, Pittenger, Christopher, Pollak, Yehuda, Reus, Victor I., Richter, Maragret A., Riddle, Mark, Robertson, Mary M., Rosenberg, David , Rouleau, Guy A., Ruhrmann, Stephan, Sampaio, Aline S., Samuels, Jack, Sandor, Paul, Sheppard, Brooke, Singer, Harvey S., Smit, Jan H., Stein , Dan J., Tishfield, Jay A., Vallada, Homero, Veenstra-VanderWeele, Jeremy, Walitza, Susanne, Wang, Ying, Wendland, Jens R., Shugart , Yin Yao, Miguel, Euripedes C., Nicolini, Humberto, Oostra, Ben A., Moessner, Rainald, Wagner, Michael, Ruiz-Linares, Andres, Heutink, Peter, Nestadt, Gerald, Freimer, Nelson, Petryshen, Tracey, Posthuma, Danielle, Jenike, Michael A., Cox, Nancy J., Hanna, Gregory L., Brentani, Helena, Schrerer , Stephen W., Arnold, Paul D., Stewart, S. Evelyn, Matthews, Carol A., Knowles, James A., Cook, Edwin H., Pauls, David L., Wang, Kai, Scharf, Jeremiah M. (April 2014) Copy Number Variation in Obsessive-Compulsive Disorder and Tourette Syndrome: A Cross-Disorder Study. Journal of American Academy of Child & Adolescent Psychiatry, 53 (8). pp. 910-9. (In Press)
McGregor, J (July 2014) Study: Top labs run by men tend to hire fewer women. Washington Post.
Meikar, O., Vagin, V. V., Chalmel, F., Sostar, K., Lardenois, A., Hammell, M., Jin, Y., Da Ros, M., Wasik, K. A., Toppari, J., Hannon, G. J., Kotaja, N. (April 2014) An atlas of chromatoid body components. RNA, 20 (4). pp. 483-95. ISSN 1355-8382
Meng, Fei-Long, Du, Zhou, Federation, Alexander, Hu, Jiazhi, Wang, Qiao, Kieffer-Kwon, Kyong-Rim, Meyers, Robin M, Amor, Corina, Wasserman, Caitlyn R, Neuberg, Donna, Casellas, Rafael, Nussenzweig, Michel C, Bradner, James E, Liu, X Shirley, Alt, Frederick W (December 2014) Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability. Cell, 159 (7). pp. 1538-48. ISSN 1097-4172
Miething, C., Scuoppo, C., Bosbach, B., Appelmann, I., Nakitandwe, J., Ma, J., Wu, G., Lintault, L., Auer, M., Premsrirut, P. K., Teruya-Feldstein, J., Hicks, J., Benveniste, H., Speicher, M. R., Downing, J. R., Lowe, S. W. (May 2014) PTEN action in leukaemia dictated by the tissue microenvironment. Nature, 510 (7505). p. 402. ISSN 0028-0836
Mills, Alea A, Hwang, Dong-Woo (October 2014) The tumor suppressor CHD5 is an epigenetic regulator of neuronal cell fate. In: AACR Annual Meeting.
Mirrione, M. M., Schulz, D., Lapidus, K. A., Zhang, S., Goodman, W., Henn, F. A. (2014) Increased metabolic activity in the septum and habenula during stress is linked to subsequent expression of learned helplessness behavior. Frontiers in Human Neuroscience, 8. p. 29. ISSN 1662-5161
Mitra, Partha P. (September 2014) The Circuit Architecture of Whole Brains at the Mesoscopic Scale. Neuron, 83 (6). pp. 1273-1283. ISSN 0896-6273
Mohammed, J., Bortolamiol-Becet, D., Flynt, A. S., Gronau, I., Siepel, A., Lai, E. C. (August 2014) Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila. RNA, 20 (8). pp. 1195-209. ISSN 1355-8382
Mohammed, J., Siepel, A., Lai, E. C. (December 2014) Diverse modes of evolutionary emergence and flux of conserved microRNA clusters. RNA, 20 (12). pp. 1850-1863. ISSN 13558382
Molaro, A., Falciatori, I., Hodges, E., Aravin, A. A., Marran, K., Rafii, S., McCombie, W. R., Smith, A. D., Hannon, G. J. (July 2014) Two waves of de novo methylation during mouse germ cell development. Genes and Development, 28 (14). pp. 1544-9. ISSN 08909369 (ISSN)
Monaco, M. K., Stein, J., Naithani, S., Wei, S., Dharmawardhana, P., Kumari, S., Amarasinghe, V., Youens-Clark, K., Thomason, J., Preece, J., Pasternak, S., Olson, A., Jiao, Y., Lu, Z., Bolser, D., Kerhornou, A., Staines, D., Walts, B., Wu, G., D'Eustachio, P., Haw, R., Croft, D., Kersey, P. J., Stein, L., Jaiswal, P., Ware, D. (January 2014) Gramene 2013: comparative plant genomics resources. Nucleic Acids Research, 42 (Databa). D1193-9. ISSN 0305-1048
Mondol, A. S., Tonks, N. K., Kamata, T. (February 2014) Nox4 redox regulation of PTP1B contributes to the proliferation and migration of glioblastoma cells by modulating tyrosine phosphorylation of coronin-1C. Free Radical Biology and Medicine, 67. pp. 285-91. ISSN 0891-5849
Moore, J. C., Davies, E. S., Walsh, D. A., Sharma, P., Moses, J. E. (October 2014) Formal synthesis of kingianin A based upon a novel electrochemically-induced radical cation Diels-Alder reaction. Chem Commun (Camb), 50 (83). pp. 12523-5. ISSN 1359-7345
Morikawa, H., Ohkura, N., Vandenbon, A., Itoh, M., Nagao-Sato, S., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R., Standley, D. M., Date, H., Sakaguchi, S., FANTOM Consortium (April 2014) Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5289-94. ISSN 0027-8424
Murray, D. W., Didier, S., Chan, A., Paulino, V., Van Aelst, L., Ruggieri, R., Tran, N. L., Byrne, A. T., Symons, M. (February 2014) Guanine nucleotide exchange factor Dock7 mediates HGF-induced glioblastoma cell invasion via Rac activation. British Journal of Cancer, 110 (5). pp. 1307-1315. ISSN 0007-0920
Myklebust, L. M., Van Damme, P., Stove, S. I., Dorfel, M. J., Abboud, A., Kalvik, T. V., Grauffel, C., Jonckheere, V., Wu, Y., Swensen, J., Kaasa, H., Liszczak, G., Marmorstein, R., Reuter, N., Lyon, G. J., Gevaert, K., Arnesen, T. (December 2014) Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects. Human Molecular Genetics, 24 (7). pp. 1956-1976. ISSN 0964-6906
Nagaraj, V. H., Mukhopadhyay, S., Dayarian, A., Sengupta, A. M. (December 2014) Breaking an Epigenetic Chromatin Switch: Curious Features of Hysteresis in Saccharomyces cerevisiae Telomeric Silencing. PLoS One, 9 (12). e113516. ISSN 1932-6203
Naguib, A., Bencze, G., Engle, D. D., Chio, II, Herzka, T., Watrud, K., Bencze, S., Tuveson, D. A., Pappin, D. J., Trotman, L. C. (December 2014) P53 Mutations Change Phosphatidylinositol Acyl Chain Composition. Cell Reports, 10 (1). pp. 8-19. ISSN 2211-1247
Nakano-Kobayashi, A., Tai, Y., Nadif Kasri, N., Van Aelst, L. (June 2014) The X-linked Mental Retardation Protein OPHN1 Interacts with Homer1b/c to Control Spine Endocytic Zone Positioning and Expression of Synaptic Potentiation. Journal of Neuroscience, 34 (26). pp. 8665-71. ISSN 0270-6474
Narzisi, G., Mishra, B., Schatz, M. C. (2014) On algorithmic complexity of biomolecular sequence assembly problem. In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer, pp. 183-195. ISBN 16113349 - ISSN978-331907952-3
Narzisi, G., O'Rawe, Jason, Iossifov, I., Fang, Han, Lee, Y. H., Wang, Zihua, Wu, Yiyang, Lyon, Gholson J., Wigler, M. H., Schatz, M. C. (August 2014) Accurate de novo and transmitted indel detection in exome-capture data using microassembly. Nature Methods, 11 (10). pp. 1033-1036.
Navlakha, S., He, X., Faloutsos, C., Bar-Joseph, Z. (July 2014) Topological properties of robust biological and computational networks. J R Soc Interface, 11 (96). p. 20140283. ISSN 1742-5662
Neesse, A., Michl, P., Tuveson, D. A., Ellenrieder, V. (April 2014) nab-Paclitaxel: Novel Clinical and Experimental Evidence in Pancreatic Cancer. Zeitschrift fur Gastroenterologie, 52 (4). pp. 360-366. ISSN 0044-2771
Newton, A. C., Trotman, L. C. (2014) Turning off AKT: PHLPP as a drug target. Annu Rev Pharmacol Toxicol, 54. pp. 537-58. ISSN 1545-4304 (Electronic)0362-1642 (Linking)
Noutsos, C., Borevitz, J. O., Hodges, S. A. (November 2014) Gene flow between nascent species: geographic, genotypic and phenotypic differentiation within and between Aquilegia formosa and A. pubescens. Molecular Ecology, 23 (22). pp. 5589-98. ISSN 0962-1083
O'Rawe, Jason, Lyon, Gholson J. (October 2014) Large pedigrees in human sequencing studies: toward a more resolved and accurate picture of genetic disease. In: 64th Annual Meeting of the American Society of Human Genetics (ASHG), October 2014, San Diego, California. (Unpublished)
O'Rawe, Jason, Lyon, Gholson J. (November 2014) Large pedigrees in human sequencing studies: toward a more resolved and accurate picture of genetic disease. In: Cold Spring Harbor Laboratory Personal Genomes Meeting, November 2014, Cold Spring Harbor, NY. (Unpublished)
Odoemene, O., Churchland, A.K. (June 2014) Listening for the Right Sounds. Neuron, 82 (5). pp. 944-945. ISSN 0896-6273
Ohlund, D., Elyada, E., Tuveson, D. (July 2014) Fibroblast heterogeneity in the cancer wound. Journal of Experimental Medicine, 211 (8). pp. 1503-23. ISSN 0022-1007
Olson, A., Klein, R. R., Dugas, D. V., Lu, Z. Y., Regulski, M., Klein, P. E., Ware, D. (July 2014) Expanding and Vetting Sorghum bicolor Gene Annotations through Transcriptome and Methylome Sequencing. Plant Genome, 7 (2). p. 20. ISSN 1940-3372
Ostrow, A. Z., Nellimoottil, T., Knott, S. R., Fox, C. A., Tavare, S., Aparicio, O. M. (2014) Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. PLoS One, 9 (2). e87647. ISSN 1932-6203
Oyibo, Hassana K., Znamenskiy, Petr, Oviedo, Hysell V., Zador, Anthony M. (September 2014) Long-term Cre-mediated retrograde tagging of neurons using a novel recombinant pseudorabies virus. Frontiers in Neuroanatomy, 8 (SEP). Art. no.86. ISSN 16625129
Palmerini, E., Maki, R. G., Staals, E. L., Alberghini, M., Antonescu, C. R., Ferrari, C., Ruggieri, P., Mavrogenis, A., Bertoni, F., Cesari, M., Paioli, A., Marchesi, E., Picci, P., Ferrari, S. (December 2014) Primary angiosarcoma of bone: a retrospective analysis of 60 patients from 2 institutions. Am J Clin Oncol, 37 (6). pp. 528-34. ISSN 1537-453X (Electronic)0277-3732 (Linking)
Pappo, A. S., Vassal, G., Crowley, J. J., Bolejack, V., Hogendoorn, P. C., Chugh, R., Ladanyi, M., Grippo, J. F., Dall, G., Staddon, A. P., Chawla, S. P., Maki, R. G., Araujo, D. M., Geoerger, B., Ganjoo, K., Marina, N., Blay, J. Y., Schuetze, S. M., Chow, W. A., Helman, L. J. (August 2014) A phase 2 trial of R1507, a monoclonal antibody to the insulin-like growth factor-1 receptor (IGF-1R), in patients with recurrent or refractory rhabdomyosarcoma, osteosarcoma, synovial sarcoma, and other soft tissue sarcomas: results of a Sarcoma Alliance for Research Through Collaboration study. Cancer, 120 (16). pp. 2448-56. ISSN 1097-0142 (Electronic)0008-543X (Linking)
Para, A., Li, Y., Marshall-Colon, A., Varala, K., Francoeur, N. J., Moran, T. M., Edwards, M. B., Hackley, C., Bargmann, B. O., Birnbaum, K. D., McCombie, W. R., Krouk, G., Coruzzi, G. M. (June 2014) Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 111 (28). pp. 10371-10378. ISSN 0027-8424
Parida, L., Atwal, G., Mishra, B. (October 2014) Proceedings of The Twelfth Annual RECOMB Comparative Genomics Conference. BMC Genomics, 15 (Suppl ). I1. ISSN 1471-2164
Park, J. H., Lee, H., Makaryus, R., Yu, M., Smith, S. D., Sayed, K., Feng, T., Holland, E., Van der Linden, A., Bolwig, T. G., Enikolopov, G., Benveniste, H. (2014) Metabolic Profiling of Dividing Cells in Live Rodent Brain by Proton Magnetic Resonance Spectroscopy (1HMRS) and LCModel Analysis. PLoS One, 9 (5). e94755. ISSN 1932-6203
Park, S. J., Jiang, K., Tal, L., Yichie, Y., Gar, O., Zamir, D., Eshed, Y., Lippman, Z. B. (November 2014) Optimization of crop productivity in tomato using induced mutations in the florigen pathway. Nature Genetics, 46 (12). pp. 1337-1342. ISSN 1061-4036
Park, Soon Ju, Eshed, Yuval, Lippman, Zachary B. (February 2014) Meristem maturation and inflorescence architecture-lessons from the Solanaceae. Current Opinion in Plant Biology, 17. pp. 70-77. ISSN 1369-5266
Patrick, P. S., Hammersley, J., Loizou, L., Kettunen, M. I., Rodrigues, T. B., Hu, D. E., Tee, S. S., Hesketh, R., Lyons, S. K., Soloviev, D., Lewis, D. Y., Aime, S., Fulton, S. M., Brindle, K. M. (January 2014) Dual-modality gene reporter for in vivo imaging. Proc Natl Acad Sci U S A, 111 (1). pp. 415-20. ISSN 1091-6490 (Electronic)0027-8424 (Linking)
Patrick, P. S., Lyons, S. K., Rodrigues, T. B., Brindle, K. M. (October 2014) Oatp1 enhances bioluminescence by acting as a plasma membrane transporter for D-luciferin. Mol Imaging Biol, 16 (5). pp. 626-34. ISSN 1860-2002 (Electronic)1536-1632 (Linking)
Paz, S., Krainer, A. R., Caputi, M. (November 2014) HIV-1 transcription is regulated by splicing factor SRSF1. Nucleic Acids Research, 42 (22). pp. 13812-13823. ISSN 0305-1048
Peikon, I. D., Gizatullina, D. I., Zador, A. M. (July 2014) In vivo generation of DNA sequence diversity for cellular barcoding. Nucleic Acids Res, 42 (16). ISSN 0305-1048
Peikon, I. D. (November 2014) Encoding of neural circuit information into DNA. PhD thesis, Cold Spring Harbor Laboratory.
Peng, X., Alfoldi, J., Gori, K., Eisfeld, A. J., Tyler, S. R., Tisoncik-Go, J., Brawand, D., Law, G. L., Skunca, N., Hatta, M., Gasper, D. J., Kelly, S. M., Chang, J., Thomas, M. J., Johnson, J., Berlin, A. M., Lara, M., Russell, P., Swofford, R., Turner-Maier, J., Young, S., Hourlier, T., Aken, B., Searle, S., Sun, X., Yi, Y., Suresh, M., Tumpey, T. M., Siepel, A., Wisely, S. M., Dessimoz, C., Kawaoka, Y., Birren, B. W., Lindblad-Toh, K., Di Palma, F., Engelhardt, J. F., Palermo, R. E., Katze, M. G. (December 2014) The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease. Nat Biotechnol, 32 (12). pp. 1250-5. ISSN 1087-0156
Penzo, M. A., Robert, V., Li, B. (February 2014) Fear Conditioning Potentiates Synaptic Transmission onto Long-Range Projection Neurons in the Lateral Subdivision of Central Amygdala. Journal of Neuroscience, 34 (7). pp. 2432-7. ISSN 0270-6474
Perales, R., King, D. M., Aguirre-Chen, C., Hammell, C. M. (July 2014) LIN-42, the Caenorhabditis elegans PERIOD homolog, Negatively Regulates MicroRNA Transcription. PLoS Genetics, 10 (7). e1004486. ISSN 15537390 (ISSN)
Perova, Zinaida (January 2014) Synaptic changes in the medial prefrontal cortex in susceptibility and resilience to stress. PhD thesis, Cold Spring Harbor Laboratory.
Pervouchine, Dmitri, Djebali, Sarah, Breschi, Alessandra, Davis, Carrie, Prieto Barja, Pablo, Dobin, Alex, Tanzer, Andrea, Lagarde, Julien, Zaleski, Chris, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Wang, Huaien, Bussotti, Giovanni, Pei, Baikang, Balasubramanian, Suganthi, Monlong, Jean, Harmanci, Arif, Gerstein, Mark, Beer, Michael, Notredame, Cedric, Guigo, Roderic, Gingeras, Thomas (October 2014) Enhanced Transcriptome Maps from Multiple Mouse Tissues Reveal Evolutionary Constraint in Gene Expression for Thousands of Genes. BioRxiv. (Unpublished)
Pirooznia, M., Kramer, M., Parla, J., Goes, F. S., Potash, J. B., McCombie, W. R., Zandi, P. P. (July 2014) Validation and assessment of variant calling pipelines for next-generation sequencing. Human Genomics, 8. ISSN 1473-95421479-7364 eISSN
Ponz-Sarvise, M., Corbo, V., Ohlund, D., Oni, T., Handly-Santana, A., Engle, D., Tiriac, H., Chio, C., Feigin, M., Baker, L., Ardito-Abraham, C., Park, Y., Hwang, C., Elyada, E., Yu, K., Clevers, H., Tuveson, D. A. (November 2014) Pancreatic ductal organoids as a new platform for drug discovery. European Journal of Cancer, 50. p. 63. ISSN 0959-8049
Porteous, D. J., Thomson, P. A., Millar, J. K., Evans, K. L., Hennah, W., Soares, D. C., McCarthy, S., McCombie, W. R., Clapcote, S. J., Korth, C., Brandon, N. J., Sawa, A., Kamiya, A., Roder, J. C., Lawrie, S. M., McIntosh, A. M., St Clair, D., Blackwood, D. H. (February 2014) DISC1 as a genetic risk factor for schizophrenia and related major mental illness: response to Sullivan. Mol Psychiatry, 19 (2). pp. 141-3. ISSN 1359-4184
Poucet, B., Sargolini, F., Song, E. Y., Hangya, B., Fox, S., Muller, R. U. (January 2014) Independence of landmark and selfmotion-guided navigation: A different role for grid cells. Philosophical Transactions of the Royal Society B: Biological Sciences, 369 (1635). ISSN 09628436 (ISSN)
Pouchelon, Gabrielle, Gambino, Frédéric, Bellone, Camilla, Telley, Ludovic, Vitali, Ilaria, Lüscher, Christian, Holtmaat, Anthony, Jabaudon, Denis (July 2014) Modality-specific thalamocortical inputs instruct the identity of postsynaptic L4 neurons. Nature, 511 (7510). pp. 471-474. ISSN 0028-0836
Pouchelon, Gabrielle, Jabaudon, Denis (April 2014) Nurturing the cortex's thalamic nature. Current Opinion in Neurology, 27 (2). pp. 142-148. ISSN 1350-7540
Powell, K. J., Han, L. C., Sharma, P., Moses, J. E. (April 2014) Chemoselective palladium-catalyzed cyanation of alkenyl halides. Org Lett, 16 (8). pp. 2158-61. ISSN 1523-7052
Pratt, E. D., Stepansky, A., Hicks, J., Kirby, B. J. (November 2014) Single-cell copy number analysis of prostate cancer cells captured with geometrically enhanced differential immunocapture microdevices. Analytical Chemistry, 86 (22). pp. 11013-7. ISSN 0003-2700
Premsrirut, P. K., Yoon, B., Pesic, M., Dow, L. E., Zuber, J., Lowe, S. W., Hannon, G. J., Zender, L., Fellmann, C. (October 2014) RNAi mouse models: Revolutionizing drug discovery in vivo. Cancer Research, 74 (19). Abstract#2974. ISSN 0008-5472
Pulido, R., Baker, S. J., Barata, J. T., Carracedo, A., Cid, V. J., Chin-Sang, I. D., Dave, V., den Hertog, J., Devreotes, P., Eickholt, B. J., Eng, C., Furnari, F. B., Georgescu, M. M., Gericke, A., Hopkins, B., Jiang, X., Lee, S. R., Losche, M., Malaney, P., Matias-Guiu, X., Molina, M., Pandolfi, P. P., Parsons, R., Pinton, P., Rivas, C., Rocha, R. M., Rodriguez, M. S., Ross, A. H., Serrano, M., Stambolic, V., Stiles, B., Suzuki, A., Tan, S. S., Tonks, N. K., Trotman, L. C., Wolff, N., Woscholski, R., Wu, H., Leslie, N. R. (July 2014) A Unified Nomenclature and Amino Acid Numbering for Human PTEN. Science signaling, 7 (332). pe15. ISSN 1937-9145
Rajagopal, N., Ernst, J., Ray, P., Wu, J., Zhang, M., Kellis, M., Ren, B. (August 2014) Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies. G3: Genes, Genomes, Genetics, 4 (11). pp. 2051-63. ISSN 21601836
Ranade, S., Pi, H.J., Kepecs, A. (September 2014) Neuroscience: Waiting for Serotonin. Current Biology, 24 (17). R803-R805. ISSN 0960-9822
Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Datasets from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]
Raposo, D., Kaufman, M. T., Churchland, A. K. (2014) Matlab code for running the PAIRS and Variance Alignment Analyses from "Raposo, David and Kaufman, Matthew T. and Churchland, Anne K. (2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience". [Dataset]
Raposo, David, Kaufman, Matthew T., Churchland, Anne K. (December 2014) A category-free neural population supports evolving demands during decision-making. Nature Neuroscience, 17 (12). pp. 1784-1792. ISSN 1546-1726
Rasmussen, M. D., Hubisz, M. J., Gronau, I., Siepel, A. (2014) Genome-wide inference of ancestral recombination graphs. PLoS Genetics, 10 (5). e1004342. ISSN 15537390 (ISSN)
Razo-Mejia, M., Boedicker, J. Q., Jones, D., Deluna, A., Kinney, J. B., Phillips, R. (April 2014) Comparison of the theoretical and real-world evolutionary potential of a genetic circuit. Physical Biology, 11 (2). ISSN 14783975
Rechavi, Oded, Houri-Ze’evi, Leah, Anava, Sarit, Goh, Wee Siong Sho, Kerk, Sze Yen, Hannon, Gregory J, Hobert, Oliver (July 2014) Starvation-Induced Transgenerational Inheritance of Small RNAs in C. elegans. Cell, 158 (2). pp. 277-287. ISSN 0092-8674
Reyes, G., Niederst, M., Cohen-Katsenelson, K., Stender, J. D., Kunkel, M. T., Chen, M., Brognard, J., Sierecki, E., Gao, T., Nowak, D. G., Trotman, L. C., Glass, C. K., Newton, A. C. (September 2014) Pleckstrin homology domain leucine-rich repeat protein phosphatases set the amplitude of receptor tyrosine kinase output. Proc Natl Acad Sci U S A, 111 (38). E3957-E3965. ISSN 0027-8424
Rigo, F., Chun, S. J., Norris, D. A., Hung, G., Lee, S., Matson, J., Fey, R. A., Gaus, H., Hua, Y., Grundy, J. S., Krainer, A. R., Henry, S. P., Bennett, C. F. (July 2014) Pharmacology of a central nervous system delivered 2′-O-methoxyethyl- modified survival of motor neuron splicing oligonucleotide in mice and nonhuman primates. Journal of Pharmacology and Experimental Therapeutics, 350 (1). pp. 46-55. ISSN 15210103
Rockland, K. S. (March 2014) Zinc-positive and zinc-negative connections of the claustrum. Frontiers in Systems Neuroscience, 8 (MAR).
Rodriguez, E., Mannion, L., D'Santos, P., Griffiths, M., Arends, M. J., Brindle, K. M., Lyons, S. K. (March 2014) Versatile and enhanced tumour modelling in mice via somatic cell transduction. J Pathol, 232 (4). pp. 449-57. ISSN 1096-9896 (Electronic)0022-3417 (Linking)
Roe, J. S., Vakoc, C. R. (January 2014) C/EBPalpha: critical at the origin of leukemic transformation. Journal of Experimental Medicine, 211 (1). pp. 1-4. ISSN 0022-1007
Ronemus, M., Iossifov, I., Levy, D., Wigler, M. (2014) The role of de novo mutations in the genetics of autism spectrum disorders. Nature Reviews Genetics, 15 (2). pp. 133-141.
Rose, S., Egeblad, M. (May 2014) Q&A: Mikala Egeblad on Tumor Microenvironment. Cancer Discovery, 4 (5). p. 503. ISSN 2159-8274
Rovó, Z., Mátyás, F., Barthó, P., Slézia, A., Lecci, S., Pellegrini, C., Astori, S., Dávid, C., Hangya, B., Lüthi, A., Acsády, L. (May 2014) Phasic, nonsynaptic GABA-A receptor-mediated inhibition entrains thalamocortical oscillations. Journal of Neuroscience, 34 (21). pp. 7137-7147. ISSN 15292401
Rowehl, R. A., Burke, S., Bialkowska, A. B., Pettet, D. W., Rowehl, L., Li, E., Antoniou, E., Zhang, Y., Bergamaschi, R., Shroyer, K. R., Ojima, I., Botchkina, G. I. (June 2014) Establishment of Highly Tumorigenic Human Colorectal Cancer Cell Line (CR4) with Properties of Putative Cancer Stem Cells. PLoS ONE, 9 (6). e99091. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Rudalska, R., Dauch, D., Longerich, T., McJunkin, K., Wuestefeld, T., Kang, T. W., Hohmeyer, A., Pesic, M., Leibold, J., von Thun, A., Schirmacher, P., Zuber, J., Weiss, K. H., Powers, S., Malek, N.P., Eilers, M., Sipos, B., Lowe, S. W., Geffers, R., Laufer, S., Zender, L. (September 2014) In vivo RNAi screening identifies a mechanism of sorafenib resistance in liver cancer. Nature Medicine, 20 (10). pp. 1138-1146. ISSN 1078-8956
Sadleir, K. R., Eimer, W. A., Kaufman, R. J., Osten, P., Vassar, R. (July 2014) Genetic Inhibition of Phosphorylation of the Translation Initiation Factor eIF2alpha Does Not Block Abeta-Dependent Elevation of BACE1 and APP Levels or Reduce Amyloid Pathology in a Mouse Model of Alzheimer's Disease. PLoS One, 9 (7). e101643. ISSN 1932-6203
Sanders, H., Kolterman, B. E., Shusterman, R., Rinberg, D., Koulakov, A., Lisman, J. (September 2014) A network that performs brute-force conversion of a temporal sequence to a spatial pattern: relevance to odor recognition. Frontiers in Computational Neuroscience, 8. Article no.108. ISSN 1662-5188
Sanders, J. I., Kepecs, A. (December 2014) A low-cost programmable pulse generator for physiology and behavior. Frontiers in Neuroengineering, 7 (43). ISSN 16626443
Sanders, Joshua (January 2014) A computational framework for understanding decision confidence. PhD thesis, Cold Spring Harbor Laboratory.
Sarkar, Bidyut, Banerjee, Arkarup, Das, Anand Kant, Nag, Suman, Kaushalya, Sanjeev Kumar, Tripathy, Umakanta, Shameem, Mohammad, Shukla, Shubha, Maiti, Sudipta (May 2014) Label-free dopamine imaging in live rat brain slices. ACS Chemical Neuroscience, 5 (5). pp. 329-334. ISSN 1948-7193
Schatz, M. C., Maron, L. G., Stein, J. C., Hernandez Wences, A., Gurtowski, J., Biggers, E., Lee, H., Kramer, M., Antoniou, E., Ghiban, E., Wright, M. H., Chia, J. M., Ware, D., McCouch, S. R., McCombie, W. R. (December 2014) Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol, 15 (11). p. 506. ISSN 1465-6906
Schwertassek, U., Haque, A., Krishnan, N., Greiner, R., Weingarten, L., Dick, T. P., Tonks, N. K. (June 2014) Reactivation of oxidized PTP1B and PTEN by Thioredoxin 1. Febs Journal, 281 (16). pp. 3545-3558. ISSN 1742-464X
Seaver, S. M., Gerdes, S., Frelin, O., Lerma-Ortiz, C., Bradbury, L. M., Zallot, R., Hasnain, G., Niehaus, T. D., El Yacoubi, B., Pasternak, S., Olson, R., Pusch, G., Overbeek, R., Stevens, R., de Crecy-Lagard, V., Ware, D., Hanson, A. D., Henry, C. S. (June 2014) High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource. Proceedings of the National Academy of Sciences of the United States of America, 111 (26). pp. 9645-9650. ISSN 0027-8424
Senturk, S., Yao, Z., Camiolo, M., Stiles, B., Rathod, T., Walsh, A. M., Nemajerova, A., Lazzara, M. J., Altorki, N. K., Krainer, A., Moll, U. M., Lowe, S. W., Cartegni, L., Sordella, R. (July 2014) p53Psi is a transcriptionally inactive p53 isoform able to reprogram cells toward a metastatic-like state. Proceedings of the National Academy of Sciences of the United States of America, 111 (32). E3287-E3296. ISSN 0027-8424
Sheltzer, J. M., Smith, J. C. (July 2014) Elite male faculty in the life sciences employ fewer women. Proc Natl Acad Sci U S A, 111 (28). pp. 10107-12. ISSN 1091-6490 (Electronic)0027-8424 (Linking)
Sherman, Mara H, Yu, Ruth T, Engle, Dannielle D, Ding, Ning, Atkins, Annette R, Tiriac, Herve, Collisson, Eric A, Connor, Frances, Van Dyke, Terry, Kozlov, Serguei, Martin, Philip, Tseng, Tiffany W, Dawson, David W, Donahue, Timothy R, Masamune, Atsushi, Shimosegawa, Tooru, Apte, Minoti V, Wilson, Jeremy S, Ng, Beverly, Lau, Sue Lynn, Gunton, Jenny E, Wahl, Geoffrey M, Hunter, Tony, Drebin, Jeffrey A, O’Dwyer, Peter J, Liddle, Christopher, Tuveson, David A, Downes, Michael, Evans, Ronald M (September 2014) Vitamin D Receptor-Mediated Stromal Reprogramming Suppresses Pancreatitis and Enhances Pancreatic Cancer Therapy. Cell, 159 (1). pp. 80-93. ISSN 0092-8674
Sheu, Y. J., Kinney, J. B., Lengronne, A., Pasero, P., Stillman, B. (April 2014) Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression. Proceedings of the National Academy of Sciences of the United States of America, 111 (18). E1899-1908. ISSN 0027-8424
Shi, J., Vakoc, C. R. (June 2014) The Mechanisms behind the Therapeutic Activity of BET Bromodomain Inhibition. Molecular Cell, 54 (5). pp. 728-736. ISSN 1097-2765
Shi, L, Li, Bingbin, Huang, Y., Liu, T, Lyon, Gholson J., Xu, A, Wang, Kai (2014) "Genotype-first" approaches on a curious case of idiopathic progressive cognitive decline. BMC Med Genomics, 7 (1). p. 66.
Shih, M. F., Dubnau, J. (October 2014) Converting drosophobia into Drosophila. Nature Neuroscience, 17 (11). pp. 1430-2. ISSN 1097-6256
Siepel, A., Arbiza, L. (December 2014) Cis-regulatory elements and human evolution. Curr Opin Genet Dev, 29c. pp. 81-89. ISSN 0959-437x
Singh, P. K., Bourque, G., Craig, N. L., Dubnau, J. T., Feschotte, C., Flasch, D. A., Gunderson, K. L., Malik, H. S., Moran, J. V., Peters, J. E., Slotkin, R. K., Levin, H. L. (November 2014) Mobile genetic elements and genome evolution 2014. Mobile DNA, 5. ISSN 1759-8753
Singh, R., Low, E. T., Ooi, L. C., Ong-Abdullah, M., Nookiah, R., Ting, N. C., Marjuni, M., Chan, P. L., Ithnin, M., Manaf, M. A., Nagappan, J., Chan, K. L., Rosli, R., Halim, M. A., Azizi, N., Budiman, M. A., Lakey, N., Bacher, B., Van Brunt, A., Wang, C., Hogan, M., He, D., MacDonald, J. D., Smith, S. W., Ordway, J. M., Martienssen, R. A., Sambanthamurthi, R. (June 2014) The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB. Nature Communications, 5. p. 4106. ISSN 20411723
Skowronska-Krawczyk, D., Ma, Q., Schwartz, M., Scully, K., Li, W., Liu, Z., Taylor, H., Tollkuhn, J., Ohgi, K. A., Notani, D., Kohwi, Y., Kohwi-Shigematsu, T., Rosenfeld, M. G. (October 2014) Required enhancer-matrin-3 network interactions for a homeodomain transcription program. Nature, 514 (7521). pp. 257-61. ISSN 1476-4687 (Electronic)0028-0836 (Linking)
Soderling, S. H., Van Aelst, L. (2014) Principles driving the spatial organization of Rho GTPase signaling at synapses. In: Ras Superfamily Small G Proteins: Biology and Mechanisms 1: General Features, Signaling. Springer, pp. 395-419. ISBN 978-370911806-13709118050978-370911805-4S
Stebbing, J., Paz, K., Schwartz, G. K., Wexler, L. H., Maki, R., Pollock, R. E., Morris, R., Cohen, R., Shankar, A., Blackman, G., Harding, V., Vasquez, D., Krell, J., Zacharoulis, S., Ciznadija, D., Katz, A., Sidransky, D. (July 2014) Patient-derived xenografts for individualized care in advanced sarcoma. Cancer, 120 (13). pp. 2006-15. ISSN 1097-0142 (Electronic)0008-543X (Linking)
Stillman, B., Speck, C., Li, H. L. (April 2014) Biochemical studies on replication of the genome in eukaryotes. Faseb Journal, 28 (1). ISSN 0892-6638
Stillman, Bruce (2014) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
Streppel, M. M., Lata, S., Delabastide, M., Montgomery, E. A., Wang, J. S., Canto, M. I., Macgregor-Das, A. M., Pai, S., Morsink, F. H., Offerhaus, G. J., Antoniou, E., Maitra, A., McCombie, W. R. (January 2014) Next-generation sequencing of endoscopic biopsies identifies ARID1A as a tumor-suppressor gene in Barrett's esophagus. Oncogene, 33 (3). pp. 347-57. ISSN 0950-9232
Striedter, G. F., Belgard, T. G., Chen, C. C., Davis, F. P., Finlay, B. L., Gunturkun, O., Hale, M. E., Harris, J. A., Hecht, E. E., Hof, P. R., Hofmann, H. A., Holland, L. Z., Iwaniuk, A. N., Jarvis, E. D., Karten, H. J., Katz, P. S., Kristan, W. B., Macagno, E. R., Mitra, P. P., Moroz, L. L., Preuss, T. M., Ragsdale, C. W., Sherwood, C. C., Stevens, C. F., Stuttgen, M. C., Tsumoto, T., Wilczynski, W. (2014) NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species. Brain, Behavior and Evolution, 83 (1). pp. 1-8. ISSN 00068977 (ISSN)
Sun, G., Krasnitz, A. (November 2014) Significant distinct branches of hierarchical trees: a framework for statistical analysis and applications to biological data. BMC Genomics, 15. p. 1000. ISSN 1471-2164
Sun, H., Wei, Y., Deng, H., Xiong, Q., Li, M., Lahiri, J., Fang, Y. (2014) Label-free cell phenotypic profiling decodes the composition and signaling of an endogenous ATP-sensitive potassium channel. Scientific Reports, 4. p. 4934. ISSN 20452322 (ISSN)
Sun, J., Ramos, A., Chapman, B., Johnnidis, J. B., Le, L., Ho, Y. J., Klein, A., Hofmann, O., Camargo, F. D. (October 2014) Clonal dynamics of native haematopoiesis. Nature, 514. pp. 322-327. ISSN 0028-0836
Sun, J., Fernandez-Cid, A., Riera, A., Tognetti, S., Yuan, Z., Stillman, B., Speck, C., Li, H. (October 2014) Structural and mechanistic insights into Mcm2-7 double-hexamer assembly and function. Genes & Development, 28 (20). pp. 2291-303. ISSN 0890-9369
Tai, Y., Janas, J. A., Wang, C. L., Van Aelst, L. (January 2014) Regulation of Chandelier Cell Cartridge and Bouton Development via DOCK7-Mediated ErbB4 Activation. Cell Reports, 6 (2). pp. 254-63. ISSN 22111247 (ISSN)
Takada, N., Pi, H. J., Sousa, V. H., Waters, J., Fishell, G., Kepecs, A., Osten, P. (October 2014) A developmental cell-type switch in cortical interneurons leads to a selective defect in cortical oscillations. Nature Communications, 5. p. 5333. ISSN 2041-1723
Tasdemir, N. (August 2014) Investigating the role of Brd4 in cellular senescence and normal tissue homeostatsis. PhD thesis, Cold Spring Harbor Laboratory.
Thakur, B. K., Zhang, H., Becker, A., Matei, I., Huang, Y., Costa-Silva, B., Zheng, Y., Hoshino, A., Brazier, H., Xiang, J., Williams, C., Rodriguez-Barrueco, R., Silva, J. M., Zhang, W., Hearn, S., Elemento, O., Paknejad, N., Manova-Todorova, K., Welte, K., Bromberg, J., Peinado, H., Lyden, D. (April 2014) Double-stranded DNA in exosomes: a novel biomarker in cancer detection. Cell Research, 24 (6). pp. 766-769. ISSN 1001-0602
Thiebaut, F., Grativol, C., Tanurdzic, M., Carnavale-Bottino, M., Vieira, T., Motta, M. R., Rojas, C., Vincentini, R., Chabregas, S. M., Hemerly, A. S., Martienssen, R. A., Ferreira, P. C. (2014) Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion. PLoS One, 9 (4). e93822. ISSN 1932-6203
Thiebaut, F., Rojas, C. A., Grativol, C., Motta, M. R., Vieira, T., Regulski, M., Martienssen, R. A., Farinelli, L., Hemerly, A. S., Ferreira, P. C. G. (September 2014) Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. BMC Genomics, 15. p. 766. ISSN 1471-2164
Thompson, A. M., Crants, J., Schnable, P. S., Yu, J., Timmermans, M. C. P., Springer, N. M., Scanlon, M. J., Muehlbauer, G. J. (May 2014) Genetic control of maize shoot apical meristem architecture. G3: Genes, Genomes, Genetics, 4 (7). pp. 1327-1337. ISSN 21601836
Thomson, P. A., Parla, J. S., McRae, A. F., Kramer, M., Ramakrishnan, K., Yao, J., Soares, D. C., McCarthy, S., Morris, S. W., Cardone, L., Cass, S., Ghiban, E., Hennah, W., Evans, K. L., Rebolini, D., Millar, J. K., Harris, S. E., Starr, J. M., MacIntyre, D. J., McIntosh, A. M., Watson, J. D., Deary, I. J., Visscher, P. M., Blackwood, D. H., McCombie, W. R., Porteous, D. J. (June 2014) 708 Common and 2010 rare DISC1 locus variants identified in 1542 subjects: Analysis for association with psychiatric disorder and cognitive traits. Molecular Psychiatry, 19 (6). pp. 668-675. ISSN 14765578
Thorner, J., Hunter, T., Cantley, L. C., Sever, R. (October 2014) Signal Transduction: From the Atomic Age to the Post-Genomic Era. Cold Spring Harbor Perspectives in Biology, 6 (12). a022913. ISSN 1943-0264
Titmus, M. A., Gurtowski, J., Schatz, M. C. (March 2014) Answering the demands of digital genomics. Concurrency Computation Practice and Experience, 26 (4). pp. 917-928. ISSN 15320626
Tonks, N., Lucito, R. (October 2014) Global assessment of the protein tyrosine phosphatome in cancer. Cancer Research, 74 (19). ISSN 0008-5472
Tsai, Y. H., Van Dussen, K. L., Sawey, E. T., Wade, A. W., Kasper, C., Rakshit, S., Bhatt, R. G., Stoeck, A., Maillard, I., Crawford, H. C., Samuelson, L. C., Dempsey, P. J. (July 2014) ADAM10 Regulates Notch Function in Intestinal Stem Cells of Mice. Gastroenterology. ISSN 0016-5085
Tschaharganeh, D. F., Xue, W., Calvisi, D. F., Evert, M., Michurina, T. V., Dow, L. E., Banito, A., Katz, S. F., Kastenhuber, E. R., Weissmueller, S., Huang, C. H., Lechel, A., Andersen, J. B., Capper, D., Zender, L., Longerich, T., Enikolopov, G., Lowe, S. W. (July 2014) p53-Dependent Nestin Regulation Links Tumor Suppression to Cellular Plasticity in Liver Cancer. Cell, 158 (3). pp. 579-92. ISSN 0092-8674
Tuveson, D. (December 2014) Progress in pancreatic cancer modeling. Molecular Cancer Research, 12 (Supple). ISSN 1541-7786
Tuveson, D. A. (November 2014) Modeling pancreatic cancer biology and medicine. Molecular Cancer Research, 12 (Supple). ISSN 1541-7786
Vakoc, C. R., Garcia-Manero, G., Look, A. T. (April 2014) Cancer therapy resistance: chasing epigenetics. Nature Medicine, 20 (4). pp. 340-341. ISSN 1078-8956
Verster, A. J., Ramani, A. K., McKay, S. J., Fraser, A. G. (February 2014) Comparative RNAi Screens in C. elegans and C. briggsae Reveal the Impact of Developmental System Drift on Gene Function. Plos Genetics, 10 (2). e1004077. ISSN 1553-7390
Wagenblast, E. (August 2014) A molecular characterization of breast cancer progression, including onset, tumor growth and metastasis. PhD thesis, Cold Spring Harbor Laboratory.
Wang, M., Perova, Z., Arenkiel, B. R., Li, B. (May 2014) Synaptic modifications in the medial prefrontal cortex in susceptibility and resilience to stress. Journal of Neuroscience, 34 (22). pp. 7485-92. ISSN 0270-6474
Warburton, D., Ronemus, M., Kline, J., Jobanputra, V., Williams, I., Anyane-Yeboa, K., Chung, W., Yu, L., Wong, N., Awad, D., Yu, C. Y., Leotta, A., Kendall, J., Yamrom, B., Lee, Y. H., Wigler, M., Levy, D. (January 2014) The contribution of de novo and rare inherited copy number changes to congenital heart disease in an unselected sample of children with conotruncal defects or hypoplastic left heart disease. Human Genetics, 133 (1). pp. 11-27. ISSN 1432-1203 (Electronic)0340-6717 (Linking)
Wasik, Kaja (April 2014) Unusual aspects of piRNA pathways in mice and flatworms. PhD thesis, Cold Spring Harbor Laboratory.
Watson, J. D. (March 2014) Type 2 diabetes as a redox disease. Lancet, 383 (9919). pp. 841-3. ISSN 0140-6736
Watts, M., Fendler, B., Merrins, M. J., Satin, L. S., Bertram, R., Sherman, A. (April 2014) Calcium and Metabolic Oscillations in Pancreatic Islets: Who's Driving the Bus? SIAM journal on applied dynamical systems, 13 (2). pp. 683-703. ISSN 1536-0040 (Print)1536-0040
Wedeh, G., Cerny-Reiterer, S., Hadzijusufovic, E., Herrmann, H., Blatt, K., Eisenwort, G., Hoermann, G., Sperr, W. R., Muellauer, L., Vakoc, C. R., Bradner, J. E., Horny, H., Zuber, J., Arock, M., Valent, P. (June 2014) The epigenetic reader brd4 serves as a novel marker and target in aggressive systemic mastocytosis and mast cell leukemia. Haematologica, 99. pp. 514-515. ISSN 0390-6078
Wei, Y., Koulakov, A. A. (November 2014) Long-term memory stabilized by noise-induced rehearsal. Journal of Neuroscience, 34 (47). pp. 15804-15. ISSN 0270-6474
Wei, Yi, Koulakov, Alexei (March 2014) Supplementary information for “Long-term memory stabilized by noise-induced rehearsal”. Unpublished. (Unpublished)
Weissmueller, S., Manchado, E., Saborowski, M., Morris, J. P. th, Wagenblast, E., Davis, C. A., Moon, S. H., Pfister, N. T., Tschaharganeh, D. F., Kitzing, T., Aust, D., Markert, E. K., Wu, J., Grimmond, S. M., Pilarsky, C., Prives, C., Biankin, A. V., Lowe, S. W. (April 2014) Mutant p53 Drives Pancreatic Cancer Metastasis through Cell-Autonomous PDGF Receptor beta Signaling. Cell, 157 (2). pp. 382-94. ISSN 1097-4172 (Electronic)0092-8674 (Linking)
Weissmueller, S. (July 2014) The impact of chromosome 17p alterations on cancer. PhD thesis, Cold Spring Harbor Laboratory.
Wen, J., Mohammed, J., Bortolamiol-Becet, D., Tsai, H., Robine, N., Westholm, J. O., Ladewig, E., Dai, Q., Okamura, K., Flynt, A. S., Zhang, D., Andrews, J., Cherbas, L., Kaufman, T. C., Cherbas, P., Siepel, A., Lai, E. C. (July 2014) Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines. Genome Research, 24 (7). pp. 1236-50. ISSN 1088-9051
Weyn-Vanhentenryck, Sebastien M., Mele, A., Yan, Q., Sun, S., Farny, N., Zhang, Z., Xue, C., Herre, M., Silver, Pamela A., Zhang, Michael Q., Krainer, Adrian R., Darnell, Robert B., Zhang, C. (March 2014) HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism. Cell Reports, 6 (6). pp. 1139-1152. ISSN 22111247 (ISSN)
Michael Wigler (2014) Use of representations of DNA for genetic analysis. United States Patent 8663917. .
Wu, J., Maki, R. G., Noroff, J. P., Silvers, D. N. (April 2014) Cutaneous metastasis of a perivascular epithelioid cell tumor. Cutis, 93 (4). E20-1. ISSN 2326-6929 (Electronic)0011-4162 (Linking)
Wu, Yiyang (January 2014) "A splice donor mutation in NAA10 results in the dysregulation of the retinoic acid signalling pathway and causes Lenz microphthalmia syndrome". Journal Club. (Unpublished)
Wu, Yiyang, Lyon, Gholson J. (January 2014) A splice donor mutation in NAA10 results in the dysregulation of the retinoic acid signalling pathway and causes Lenz microphthalmia syndrome. Journal Club. (Unpublished)
Xiong, H. Y., Alipanahi, B., Lee, L. J., Bretschneider, H., Merico, D., Yuen, R. K., Hua, Y., Gueroussov, S., Najafabadi, H. S., Hughes, T. R., Morris, Q., Barash, Y., Krainer, A. R., Jojic, N., Scherer, S. W., Blencowe, B. J., Frey, B. J. (December 2014) RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science, 347 (6218). ISSN 0036-8075
Xu, Y., Vakoc, C. R. (November 2014) Brd4 is on the move during inflammation. Trends in Cell Biology, 24 (11). pp. 615-616. ISSN 0962-8924
Yang, M., Haase, A. D., Huang, F. K., Coulis, G., Rivera, K. D., Dickinson, B. C., Chang, C. J., Pappin, D. J., Neubert, T. A., Hannon, G. J., Boivin, B., Tonks, N. K. (August 2014) Dephosphorylation of Tyrosine 393 in Argonaute 2 by Protein Tyrosine Phosphatase 1B Regulates Gene Silencing in Oncogenic RAS-Induced Senescence. Mol Cell, 55 (5). pp. 782-790. ISSN 1097-2765
Yao, J., Zhang, K. X., Kramer, M., Pellegrini, M., McCombie, W. R. (January 2014) FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies. Bioinformatics. ISSN 1367-4803
Yilancioglu, K., Weinstein, Z. B., Meydan, C., Akhmetov, A., Toprak, I., Durmaz, A., Iossifov, I., Kazan, H., Roth, F. P., Cokol, M. (August 2014) Target-independent prediction of drug synergies using only drug lipophilicity. Journal of Chemical Information and Modeling, 54 (8). pp. 2286-2293. ISSN 15499596
Yu, S., Yehia, G., Wang, J., Stypulkowski, E., Sakamori, R., Jiang, P., Hernandez-Enriquez, E. B., Tran, T. S., Bonder, E. M., Guo, W., Gao, N. (September 2014) Global Ablation of Mouse Rab11a Impairs Early Embryogenesis and Matrix Metalloproteinase Secretion. Journal of Biological Chemistry, 289 (46). pp. 32030-32043. ISSN 0021-9258
Yuan, T. L., Fellmann, C., Lee, C. S., Ritchie, C. D., Thapar, V., Lee, L. C., Hsu, D. J., Grace, D., Carver, J. O., Zuber, J., Luo, J., McCormick, F., Lowe, S. W. (August 2014) Development of siRNA payloads to target KRAS-mutant cancer. Cancer Discovery, 4 (10). p. 1182. ISSN 21598274
Yue, F., Cheng, Y., Breschi, A., Vierstra, J., Wu, W., Ryba, T., Sandstrom, R., Ma, Z., Davis, C., Pope, B. D., Shen, Y., Pervouchine, D. D., Djebali, S., Thurman, R. E., Kaul, R., Rynes, E., Kirilusha, A., Marinov, G. K., Williams, B. A., Trout, D., Amrhein, H., Fisher-Aylor, K., Antoshechkin, I., DeSalvo, G., See, L. H., Fastuca, M., Drenkow, J., Zaleski, C., Dobin, A., Prieto, P., Lagarde, J., Bussotti, G., Tanzer, A., Denas, O., Li, K., Bender, M. A., Zhang, M., Byron, R., Groudine, M. T., McCleary, D., Pham, L., Ye, Z., Kuan, S., Edsall, L., Wu, Y. C., Rasmussen, M. D., Bansal, M. S., Kellis, M., Keller, C. A., Morrissey, C. S., Mishra, T., Jain, D., Dogan, N., Harris, R. S., Cayting, P., Kawli, T., Boyle, A. P., Euskirchen, G., Kundaje, A., Lin, S., Lin, Y., Jansen, C., Malladi, V. S., Cline, M. S., Erickson, D. T., Kirkup, V. M., Learned, K., Sloan, C. A., Rosenbloom, K. R., Lacerda de Sousa, B., Beal, K., Pignatelli, M., Flicek, P., Lian, J., Kahveci, T., Lee, D., Kent, W. J., Ramalho Santos, M., Herrero, J., Notredame, C., Johnson, A., Vong, S., Lee, K., Bates, D., Neri, F., Diegel, M., Canfield, T., Sabo, P. J., Wilken, M. S., Reh, T. A., Giste, E., Shafer, A., Kutyavin, T., Haugen, E., Dunn, D., Reynolds, A. P., Neph, S., Humbert, R., Hansen, R. S., De Bruijn, M. (November 2014) A comparative encyclopedia of DNA elements in the mouse genome. Nature, 515 (7527). pp. 355-64. ISSN 0028-0836
Zaiss, A. K., Zuber, J., Chu, C., Machado, H. B., Jiao, J., Catapang, A. B., Ishikawa, T. O., Gil, J. S., Lowe, S. W., Herschman, H. R. (July 2014) Reversible Suppression of Cyclooxygenase 2 (COX-2) Expression In Vivo by Inducible RNA Interference. PLoS One, 9 (7). e101263. ISSN 1932-6203
Zepeda-Mendoza, C. J. (September 2014) Impact of copy number variation on chromatin interactions at the mouse 4e2 chromosome region. PhD thesis, Cold Spring Harbor Laboratory.
Zinovyeva, A. Y., Bouasker, S., Simard, M. J., Hammell, C. M., Ambros, V. (April 2014) Mutations in Conserved Residues of the C. elegans microRNA Argonaute ALG-1 Identify Separable Functions in ALG-1 miRISC Loading and Target Repression. PLoS Genetics, 10 (4). e1004286. ISSN 1553-7404 (Electronic)1553-7390 (Linking)
Znamenskiy, Petr (March 2014) Role of corticostriatal projections in auditory discrimination. PhD thesis, Cold Spring Harbor Laboratory.
Zwickl, D. J., Stein, J. C., Wing, R. A., Ware, D., Sanderson, M. J. (September 2014) Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Systematic Biology, 63 (5). pp. 645-659. ISSN 1076836X (ISSN)
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