Items where Year is 2005

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Number of items: 303.

A

Allemand, E., Guil, S., Myers, M., Moscat, J., Caceres, J. F., Krainer, A. R. (2005) Regulation of heterogenous nuclear ribonucleoprotein A1 transport by phosphorylation in cells stressed by osmotic shock. Proc Natl Acad Sci U S A, 102 (10). pp. 3605-10. ISSN 0027-8424 (Print)

Andersen, J. N., Del Vecchio, R. L., Kannan, N., Gergel, J., Neuwald, A. F., Tonks, N.K. (2005) Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources. Methods, 35 (1). pp. 90-114. ISSN 1046-2023 (Print)

Antonescu, C. R., Besmer, P., Guo, T., Arkun, K., Hom, G., Koryotowski, B., Leversha, M. A., Jeffrey, P. D., Desantis, D., Singer, S., Brennan, M. F., Maki, R. G., DeMatteo, R. P. (2005) Acquired resistance to imatinib in gastrointestinal stromal tumor occurs through secondary gene mutation. Clin Cancer Res, 11 (11). pp. 4182-90. ISSN 1078-0432 (Print)1078-0432 (Linking)

B

Bajaj, S., Mohanty, A. (2005) Recent advances in rice biotechnology-towards genetically superior transgenic rice. Plant Biotechnology Journal, 3 (3). pp. 275-307. ISSN 1467-7644

Bakker, B. L. G., DeWitt, M. A., Ji, C. R., Mishchenko, Y. (2005) Restoring the equivalence between the light-front and manifestly covariant formalisms. Physical Review D, 72 (7). ISSN 1550-7998

Barberis, D., Casazza, A., Sordella, R., Corso, S., Artigiani, S., Settleman, J., Comoglio, P. M., Tamagnone, L. (2005) p190 Rho-GTPase activating protein associates with plexins and it is required for semaphorin signalling. Journal of Cell Science, 118 (Pt 20). pp. 4689-700. ISSN 0021-9533

Barria, A., Malinow, R. (2005) NMDA receptor subunit composition controls synaptic plasticity by regulating binding to CaMKII. Neuron, 48 (2). pp. 289-301. ISSN 0896-6273 (Print)

Bedell, J. A., Budiman, M. A., Nunberg, A., Citek, R. W., Robbins, D., Jones, J., Flick, E., Rohlfing, T., Fries, J., Bradford, K., McMenamy, J., Smith, M., Holeman, H., Roe, B. A., Wiley, G., Korf, I. F., Rabinowicz, P. D., Lakey, N., McCombie, W. R., Jeddeloh, J. A., Martienssen, R. A. (2005) Sorghum genome sequencing by methylation filtration. PLoS Biology, 3 (1). e13. ISSN 1544-9173

Bejerano, G., Siepel, A. C., Kent, W. J., Haussler, D. (2005) Computational screening of conserved genomic DNA in search of functional noncoding elements. Nat Methods, 2 (7). pp. 535-45. ISSN 1548-7091 (Print)1548-7091

Bell, D. W., Gore, I., Okimoto, R. A., Godin-Heymann, N., Sordella, R., Mulloy, R., Sharma, S. V., Brannigan, B. W., Mohapatra, G., Settleman, J., Haber, D. A. (2005) Inherited susceptibility to lung cancer may be associated with the T790M drug resistance mutation in EGFR. Nature Genetics, 37 (12). pp. 1315-6. ISSN 1061-4036

Benezra, R., Henke, E., Ciarrocchi, A., Ruzinova, M., Solit, D., Rosen, N., Nolan, Daniel, Mittal, V., De Candia, P. (2005) Induction of complete regressions of oncogene-induced breast tumors in mice. In: Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor, New York.

Bernstein, Bradley E., Kamal, Michael, Lindblad-Toh, Kerstin, Bekiranov, Stefan, Bailey, Dione K., Huebert, Dana J., McMahon, Scott, Karlsson, Elinor K., Kulbokas Iii, Edward J., Gingeras, Thomas R., Schreiber, Stuart L., Lander, Eric S. (2005) Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse. Cell, 120 (2). pp. 169-181. ISSN 0092-8674

Boehm, J., Malinow, R. (2005) AMPA receptor phosphorylation during synaptic plasticity. Biochem Soc Trans, 33 (Pt 6). pp. 1354-6. ISSN 0300-5127 (Print)

Bokil, H., Pesaran, B., Andersen, R. A., Mitra, P. P. (2005) A framework for detection and classification of events in neural activity. arXiv.

Bolduc, F. V., Shevell, M. I. (2005) Corrected head circumference centiles as a possible predictor of developmental performance in high-risk neonatal intensive care unit survivors. Dev Med Child Neurol, 47 (11). pp. 766-70. ISSN 0012-1622 (Print)

Bommert, P., Lunde, C., Nardmann, J., Vollbrecht, E., Running, M., Jackson, D. P., Hake, S., Werr, W. (2005) Thick tassel dwarf1 encodes a putative maize ortholog of the Arabidopsis CLAVATA1 leucine-rich repeat receptor-like kinase. Development, 132 (6). pp. 1235-1245. ISSN 0950-1991

Bommert, P., Satoh-Nagasawa, N., Jackson, D. P., Hirano, H.Y. (2005) Genetics and evolution of inflorescence and flower development in grasses. Plant Cell Physiol, 46 (1). pp. 69-78. ISSN 0032-0781 (Print)

Brenner, E. D., Katari, M. S., Stevenson, D. W., Rudd, S. A., Douglas, A. W., Moss, W. N., Twigg, R. W., Runko, S. J., Stellari, G. M., McCombie, W. R., Coruzzi, G. M. (2005) EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes. BMC Genomics, 6. p. 143. ISSN 1471-2164

Buell, C. R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Zhu, W., Wang, A., Maiti, R., Haas, B., Wortman, J., Pertea, M., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, J., Jin, S., Johri, S., Reardon, M., Webb, K., Hill, J., Moffat, K., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., De Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Yu, Y., Kim, H., Rambo, T., Currie, J., Collura, K., Kernodle-Thompson, S., Wei, F., Kudrna, D., Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Henry, D., Oates, R., Palmer, M., Pries, G., Saski, C., Simmons, J., Soderlund, C., Nelson, W., De La Bastide, M., Spiegel, L., Nascimento, L., Huang, E., Preston, R., Zutavern, T., Palmer, L., O'Haughnessy, A., Dike, S., Minx, P., Cordum, H., Wilson, R., Jin, W., Lee, H. R., Jiang, J., Jackson, S. (2005) Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium. Genome Research, 15 (9). pp. 1284-1291. ISSN 10889051 (ISSN)

C

Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M. C., Maeda, N., Oyama, R., Ravasi, T., Lenhard, B., Wells, C., Kodzius, R., Shimokawa, K., Bajic, V. B., Brenner, S. E., Batalov, S., Forrest, A. R. R., Zavolan, M., Davis, M. J., Wilming, L. G., Aidinis, V., Allen, J. E., Ambesi-Impiombato, A., Apweiler, R., Aturaliya, R. N., Bailey, T. L., Bansal, M., Baxter, L., Beisel, K. W., Bersano, T., Bono, H., Chalk, A. M., Chiu, K. P., Choudhary, V., Christoffels, A., Clutterbuck, D. R., Crowe, M. L., Dalla, E., Dalrymple, B. P., de Bono, B., della Gatta, G., di Bernardo, D., Down, T., Engstrom, P., Fagiolini, M., Faulkner, G., Fletcher, C. F., Fukushima, T., Furuno, M., Futaki, S., Gariboldi, M., Georgii-Hemming, P., Gingeras, T. R., Gojobori, T., Green, R. E., Gustincich, S., Harbers, M., Hayashi, Y., Hensch, T. K., Hirokawa, N., Hill, D., Huminiecki, L., Iacono, M., Ikeo, K., Iwama, A., Ishikawa, T., Jakt, M., Kanapin, A., Katoh, M., Kawasawa, Y., Kelso, J., Kitamura, H., Kitano, H., Kollias, G., Krishnan, S. P. T., Kruger, A. F., Kummerfeld, S. K., Kurochkin, I. V., Lareau, L. F., Lazarevic, D., Lipovich, L., Liu, J., Liuni, S., McWilliam, S., Madan Babu, M., Madera, M., Marchionni, L., Matsuda, H., Matsuzawa, S., Miki, H., Mignone, F., Miyake, S., Morris, K., Mottagui-Tabar, S., Mulder, N., Nakano, N., Nakauchi, H., Ng, P., Nilsson, R., Nishiguchi, S., Nishikawa, S. (2005) The transcriptional landscape of the mammalian genome. Science, 309 (5740). pp. 1559-1563. ISSN 10959203 (ISSN)

Chakraborty, S. (2005) Analysis and Modeling of Neural Connectivity in a Short Term Memory System. PhD thesis, Cold Spring Harbor Laboratory.

Chan, H. M., Narita, M., Lowe, S. W., Livingstone, D. M. (2005) The p400 E1A-associated protein is a novel component of the p53 -> p21 senescence pathway. Genes Dev, 19 (2). pp. 196-201. ISSN 0890-9369

Charvin, G., Strick, T. R., Bensimon, D., Croquette, V. (2005) Tracking topoisomerase activity at the single-molecule level. Annual Review of Biophysics and Biomolecular Structure, 34. pp. 201-219. ISSN 1056-8700

Chen, B., Trachtenberg, J.T., Holtmaat, A. J., Svoboda, K. (2005) Long-term, high-resolution imaging in the neocortex in vivo. In: Live cell imaging: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 423-424. ISBN 0879696826

Chen, N., Harris, T. W., Antoshechkin, I., Bastiani, C., Bieri, T., Blasiar, D., Bradnam, K., Canaran, P., Chan, J., Chen, C.-K., Chen, W. J., Cunningham, F., Davis, P., Kenny, E., Kishore, Ra.., Lawson, D., Lee, R., Muller, H. M., Nakamura, Ce., Pai, S., Ozersky, P., Petcherski, A., Rogers, An., Sabo, A., Schwarz, Er. M., Van Auken, K., Wang, Q., Durbin, R., Spieth, J., Sternberg, P. W., Stein, L. D. (2005) WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. Nucleic Acids Res, 33 (Databa). D383-9. ISSN 1362-4962 (Electronic)

Chen, N., Pai, S., Zhao, Z., Mah, A., Newbury, R., Johnsen, R. C., Altun, Z., Moerman, D. G., Baillie, D. L., Stein, L. D. (2005) Identification of a nematode chemosensory gene family. Proc Natl Acad Sci U S A, 102 (1). pp. 146-51. ISSN 0027-8424 (Print)

Chen, Z., Trotman, L. C., Shaffer, D., Lin, H. K., Dotan, Z. A., Niki, M., Koutcher, J. A., Scher, H. I., Ludwig, T., Gerald, W., Cordon-Cardo, C., Pandolfi, P. P. (2005) Crucial role of p53-dependent cellular senescence in suppression of Pten-deficient tumorigenesis. Nature, 436 (7051). pp. 725-30. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Chen, Z., Trotman, L. C., Shaffer, D., Lin, H. K., Dotan, Z. A., Niki, M., Koutcher, J. A., Scher, H. I., Ludwig, T., Gerald, W., Cordon-Cardo, C., Pandolfi, P. P. (2005) Crucial role of p53-dependent cellular senescence in suppression of Pten-deficient tumorigenesis. Nature, 436 (7051). pp. 725-30. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Cheng, J., Kapranov, P., Drenkow, J., Dike, S., Brubaker, S., Patel, S., Long, J., Stern, D., Tammana, H., Helt, G., Sementchenko, V., Piccolboni, A., Bekiranov, S., Bailey, D. K., Ganesh, M., Ghosh, S., Bell, I., Gerhard, D. S., Gingeras, T. R. (2005) Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science, 308 (5725). pp. 1149-1154. ISSN 00368075 (ISSN)

Choisne, N., Demange, N., Orjeda, G., Samain, S., D'Hont, A., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., Scarpelli, C., Weissenbach, J., Salanoubat, M., Quetier, F., Singh, N. K., Mohapatra, T., Sharma, T. R., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S. K., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Dixit, R., Singh, H., Swain, S. C., Pal, S., Ragiba, M., Singh, P. K., Singhal, V., Mendiratta, S. D., Batra, K., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Vydianathan, R., Vij, S., Kapur, A., Khurana, P., Sharma, S., Khurana, J. P., Tyagi, A. K., Yuan, Q. P., Ouyang, S., Liu, J., Zhu, W., Wang, A. H., Lin, H. N., Hamilton, J., Haas, B., Wortman, J., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, B., Jin, S. H., Johri, S., Reardon, M., Vuong, H., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., de Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Buell, C. R., Yu, Y., Rambo, T., Currie, J., Collura, K., Kim, H. R., Stum, D., Wang, W. M., Kudrna, D., Mueller, C., Wing, R. A., Kramer, M., Spiegel, L., Nascimento, L., Preston, R., Zutavern, T., Palmer, L., O'Shaughnessy, A., McCombie, W. R. (2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biology, 3. ISSN 1741-7007

Churchland, A. K., Lisberger, S. G. (2005) Discharge properties of MST neurons that project to the frontal pursuit area in macaque monkeys. Journal of Neurophysiology, 94 (2). pp. 1084-1090. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (2005) Relationship between extraretinal component of firing rate and eye speed in area MST of Macaque monkeys. Journal of Neurophysiology, 94 (4). pp. 2416-2426. ISSN 00223077 (ISSN)

Cline, H. T. (2005) Synaptogenesis: a balancing act between excitation and inhibition. Curr Biol, 15 (6). R203-5. ISSN 0960-9822 (Print)

Coghlan, A., Eichler, E. E., Oliver, S. G., Paterson, A. H., Stein, L. D. (2005) Chromosome evolution in eukaryotes: a multi-kingdom perspective. Trends in Genetics, 21 (12). pp. 673-682. ISSN 0168-9525

Cokol, M., Iossifov, I., Weinreb, C., Rzhetsky, A. (2005) Emergent behavior of growing knowledge about molecular interactions. Nat Biotechnol, 23 (10). pp. 1243-7. ISSN 1087-0156 (Print)1087-0156 (Linking)

Consugar, M. B., Anderson, S. A., Rossetti, S., Pankratz, S., Ward, C. J., Torra, R., Coto, E., El-Youssef, M., Kantarci, S., Utsch, B., Hildebrandt, F., Sweeney, W. E., Avner, E. D., Torres, V. E., Cunningham, J. M., Harris, P. C. (2005) Haplotype analysis improves molecular diagnostics of autosomal recessive polycystic kidney disease. American Journal of Kidney Diseases, 45 (1). pp. 77-87. ISSN 0272-6386

Coutinho, G., Xie, J. Y., Du, L. T., Brusco, A., Krainer, A. R., Gatti, R. A. (2005) Functional significance of deep intronic mutation in the ATM gene and evidence for an alternative Exon 28a. Human Mutation, 25 (2). pp. 118-124. ISSN 1059-7794

D

D'Adamo, D. R., Anderson, S. E., Albritton, K., Yamada, J., Riedel, E., Scheu, K., Schwartz, G. K., Chen, H., Maki, R. G. (2005) Phase II study of doxorubicin and bevacizumab for patients with metastatic soft-tissue sarcomas. J Clin Oncol, 23 (28). pp. 7135-42. ISSN 0732-183X (Print)0732-183X (Linking)

DeWeese, M. R., Hromádka, T., Zador, A. M. (2005) Reliability and representational bandwidth in the auditory cortex. Neuron, 48 (3). pp. 479-88. ISSN 0896-6273 (Print)

DeWeese, M. R., Zador, A. M. (2005) Neural gallops across auditory streams. Neuron, 48 (1). pp. 5-7. ISSN 0896-6273 (Print)

Del Vecchio, R. L., Tonks, N. K. (2005) The conserved immunoglobulin domain controls the subcellular localization of the homophilic adhesion receptor protein-tyrosine phosphatase mu. J Biol Chem, 280 (2). pp. 1603-12. ISSN 0021-9258 (Print)

Deregnaucourt, S., Mitra, P. P., Feher, O., Pytte, C., Tchernichovski, O. (2005) How sleep affects the developmental learning of bird song. Nature, 433 (7027). pp. 710-716. ISSN 0028-0836

Dickins, R. A., Hemann, M. T., Zilfou, J. T., Simpson, D. R., Ibarra, I., Hannon, G. J., Lowe, S. W. (2005) Probing tumor phenotypes using stable and regulated synthetic microRNA precursors. Nat Genet, 37 (11). pp. 1289-95. ISSN 1061-4036 (Print)

Dore, L. C., Vakoc, C. R., Blobel, G. A., Hardison, R. C., Bodine, D. M., Gallagher, P. G., Weiss, M. J. (2005) Genomic organization, chromatin structure, and transcriptional regulation of the murine Alpha Hemoglobin Stabilizing Protein (AHSP) gene. Blood, 106 (11). 1012A-1012A. ISSN 0006-4971

Duelli, D. M., Hearn, S., Myers, M. P., Lazebnik, Y. (2005) A primate virus generates transformed human cells by fusion. J Cell Biol, 171 (3). pp. 493-503. ISSN 0021-9525 (Print)

Dunn, E. F., Hammell, C. M., Hodge, C. A., Cole, C. N. (2005) Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export. Genes and Development, 19 (1). pp. 90-103. ISSN 08909369 (ISSN)

de la Cruz, N., Bromberg, S., Pasko, D., Shimoyama, M., Twigger, S., Chen, J. L., Chen, C. F., Fan, C., Foote, C., Gopinath, G. R., Harris, G., Hughes, A., Ji, Y., Jin, W. H., Li, D. W., Mathis, J., Nenasheva, N., Nie, J., Nigam, R., Petri, V., Reilly, D., Wang, W. Y., Wu, W. H., Zuniga-Meyer, A., Zhao, L., Kwitek, A., Tonellato, P., Jacob, H. (2005) The Rat Genome Database (RGD): developments towards a phenome database. Nucleic Acids Research, 33. D485-D491. ISSN 0305-1048

E

Egeblad, M., Littlepage, L. E., Werb, Z. (2005) The fibroblastic coconspirator in cancer progression. Cold Spring Harbor Symposia on Quantitative Biology, 70. pp. 383-388. ISSN 00917451 (ISSN)

Egger, V., Svoboda, K., Mainen, Z. F. (2005) Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. J Neurosci, 25 (14). pp. 3521-30. ISSN 1529-2401 (Electronic)

Eilbeck, K., Lewis, S. E., Mungall, C. J., Yandell, M., Stein, L. D., Durbin, R., Ashburner, M. (2005) The Sequence Ontology: a tool for the unification of genome annotations. Genome Biology, 6 (5). ISSN 1465-6914

Elgin, S. C. R., Haynes, K., Brower-Toland, B., Gracheva, E., Hannon, G. J., Caudy, A. A. (2005) RNAi-dependent assembly of heterochromatin in Drosophila. Faseb Journal, 19 (5). A1720-A1720. ISSN 0892-6638

Elledge, S. J., Hannon, G. J. (2005) An open letter to cancer researchers. Science, 310 (5747). 439-+. ISSN 0036-8075

Encinas, J. M., Manganas, L., Enikolopov, G. N. (2005) Nitric oxide and multiple sclerosis. Curr Neurol Neurosci Rep, 5 (3). pp. 232-8. ISSN 1528-4042 (Print)

Ende, G., Hubrich, P., Walter, S., Weber-Fahr, W., Kammerer, N., Braus, D. F., Henn, F. A. (2005) Further evidence for altered cerebellar neuronal integrity in schizophrenia. Am J Psychiatry, 162 (4). pp. 790-2. ISSN 0002-953X (Print)0002-953X (Linking)

Enikolopov, G. N., Hoffman, R., Li, L. N., Maletic-Savatic, M., Manganas, L. N., Mignone, J. L., Roig, J. L., Schones, D. E., Zhang, M. Q. (2005) Neural potential of stem cells in the hair follicle. Faseb Journal, 19 (4). A765-A765. ISSN 0892-6638

Esmon, C. A., Pedmale, U. V., Liscum, E. (2005) Plant tropisms: providing the power of movement to a sessile organism. Int J Dev Biol, 49 (5-6). pp. 665-74. ISSN 0214-6282 (Print)0214-6282

Ezhkova, E. (2005) Role of the Proteasome in Gene Control. PhD thesis, Cold Spring Harbor Laboratory.

F

Fang, Y., Spector, D. L. (2005) Centromere positioning and dynamics in living Arabidopsis plants. Mol Biol Cell, 16 (12). pp. 5710-8. ISSN 1059-1524 (Print)

Felsen, G., Dan, Y. (2005) A natural approach to studying vision. Nat Neurosci, 8 (12). pp. 1643-6. ISSN 1097-6256 (Print)

Fernandez, Y., Verhaegen, M., Miller, T. P., Rush, J. L., Steiner, P., Opipari, A. W., Lowe, S. W., Soengas, M. S. (2005) Differential regulation of noxa in normal Melanocytes and melanoma cells by proteasome inhibition: Therapeutic implications. Cancer Research, 65 (14). pp. 6294-6304. ISSN 0008-5472

Finnberg, N., Gruber, J. J., Fei, P. W., Rudolph, D., Bric, A., Kim, S. H., Burns, T. F., Ajuha, H., Page, R., Wu, G. S., Chen, Y. H., McKenna, W. G., Bernhard, E., Lowe, S., Mak, T., El-Deiry, W. S. (2005) DR5 knockout mice are compromised in radiation-induced apoptosis. Molecular and Cellular Biology, 25 (5). pp. 2000-2013. ISSN 0270-7306

Foa, L., Jensen, K., Rajan, I., Bronson, Ki., Gasperini, Ro., Worley, P. F., Tu, J. C., Cline, H. T. (2005) Homer expression in the Xenopus tadpole nervous system. J Comp Neurol, 487 (1). pp. 42-53. ISSN 0021-9967 (Print)

Forstemann, K., Tomari, Y., Du, T. T., Vagin, V. V., Denli, A. M., Bratu, D. P., Klattenhoff, C., Theurkauf, W. E., Zamore, P. D. (2005) Normal microRNA maturation and germ-line stem cell maintenance requires loquacious, a double-stranded RNA- binding domain protein. Plos Biology, 3 (7). pp. 1187-1201. ISSN 1544-9173

Fouts, D. E., Mongodin, E. F., Mandrell, R. E., Miller, W. G., Rasko, D. A., Ravel, J., Brinkac, L. M., Deboy, R. T., Parker, C. T., Daugherty, S. C., Dodson, R. J., Scott Durkin, A., Madupu, R., Sullivan, S. A., Shetty, J. U., Ayodeji, M. A., Shvartsbeyn, A., Schatz, M. C., Badger, J. H., Fraser, C. M., Nelson, K. E. (2005) Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. PLoS Biology, 3 (1). ISSN 15449173 (ISSN)

Furukawa, H, Hamada, T, Ishiguro, M, Hirota, H, Haga, T (2005) Determination of steric structure of muscarinic ligands bound to muscarinic receptors: approaches by TRNOE (transferred nuclear Overhauser effect). In: G protein-coupled receptors: structure, function, and ligand screening. CRC Press, pp. 261-281. ISBN 978-0-8493-2771-1

Furukawa, H., Singh, S. K., Mancusso, R., Gouaux, E. (2005) Subunit arrangement and function in NMDA receptors. Nature, 438 (7065). pp. 185-192. ISSN 0028-08361476-4687 (Electronic)1476-4687 (Linking)

Fury, M. G., Antonescu, C. R., Van Zee, K. J., Brennan, M. F., Maki, R. G. (2005) A 14-year retrospective review of angiosarcoma: clinical characteristics, prognostic factors, and treatment outcomes with surgery and chemotherapy. Cancer J, 11 (3). pp. 241-7. ISSN 1528-9117 (Print)1528-9117 (Linking)

G

Galic, S., Hauser, C., Kahn, B. B., Haj, F. G., Neel, B. G., Tonks, N. K., Tiganis, T. (2005) Coordinated regulation of insulin signaling by the protein tyrosine phosphatases PTP1B and TCPTP. Molecular and Cellular Biology, 25 (2). pp. 819-829. ISSN 0270-7306

Galteland, E., Sivertsen, E. A., Svendsrud, D. H., Smedshammer, L., Kresse, S. H., Meza-Zepeda, L. A., Myklebost, O., Suo, Z., Mu, D., DeAngelis, P. M., Stokke, T. (2005) Translocation t(14;18) and gain of chromosome 18/BCL2: effects on BCL2 expression and apoptosis in B-cell non-Hodgkin's lymphomas. Leukemia, 19 (12). pp. 2313-2323. ISSN 0887-6924

Gao, M. Q., Li, G. Y., McCombie, W. R., Quiros, C. F. (2005) Comparative analysis of a transposon-rich Brassica oleracea BAC clone with its corresponding sequence in A-thaliana. Theoretical and Applied Genetics, 111 (5). pp. 949-955. ISSN 0040-5752

Garcia-Carbonero, R., Supko, J. G., Maki, R. G., Manola, J., Ryan, D. P., Harmon, D., Puchalski, T. A., Goss, G., Seiden, M. V., Waxman, A., Quigley, M. T., Lopez, T., Sancho, M. A., Jimeno, J., Guzman, C., Demetri, G. D. (2005) Ecteinascidin-743 (ET-743) for chemotherapy-naive patients with advanced soft tissue sarcomas: multicenter phase II and pharmacokinetic study. J Clin Oncol, 23 (24). pp. 5484-92. ISSN 0732-183X (Print)0732-183X (Linking)

Geerts, H. (2005) Small steps towards treatment of incurable neurodegenerative diseases. Drug Discov Today, 10 (6). pp. 391-3. ISSN 1359-6446 (Print)

Gendrel, A. V., Lippman, Z. , Martienssen, R., Colot, V. (2005) Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods, 2 (3). pp. 213-218. ISSN 1548-7091

Gillis, J. A., Luk, W. P., Zhang, L., Skinner, F. K. (2005) Characterizing in vitro hippocampal ripples using time-frequency analysis. Neurocomputing, 65-66 (SPEC. ). pp. 357-364. ISSN 09252312 (ISSN)

Gillis, J. A., Luk, W. P., Zhang, L., Skinner, F. K. (2005) Decomposing rhythmic hippocampal data to obtain neuronal correlates. Journal of Neuroscience Methods, 147 (2). pp. 99-113. ISSN 01650270 (ISSN)

Gingeras, T. R., Higuchi, R., Kricka, L. J., Lo, Y. M. D., Wittwer, C. T. (2005) Fifty years of molecular (DNA/RNA) diagnostics. Clinical Chemistry, 51 (3). pp. 661-671. ISSN 00099147 (ISSN)

Gleiberman, A. S., Encinas, J. M., Mignone, J. L., Michurina, T., Rosenfeld, M. G., Enikolopov, G. (2005) Expression of nestin-green fluorescent protein transgene marks oval cells in the adult liver. Developmental Dynamics, 234 (2). pp. 413-421. ISSN 1058-8388

Gleiberman, A. S., Encinas, J. M., Roig, J. L., Michurina, T. V., Krasnov, P., Rosenfeld, M. G., Enikolopov, G. N. (2005) Stem cells for the anterior pituitary identified by nestin-GFP transgene expression. Developmental Biology, 283 (2). pp. 581-582. ISSN 0012-1606

Goldberg, E. M., Watanabe, S., Chang, S. Y., Joho, R. H., Huang, Z. J., Leonard, C. S., Rudy, B. (2005) Specific functions of synaptically localized potassium channels in synaptic transmission at the neocortical GABAergic fast-spiking cell synapse. Journal of Neuroscience, 25 (21). pp. 5230-5235. ISSN 0270-6474

Goldman, R. D., Spector, D. L. (2005) Live cell imaging : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. ISBN 0879696834

Govek, E. E., Newey, S. E., Van Aelst, L. (2005) The role of the Rho GTPases in neuronal development. Genes Dev, 19 (1). pp. 1-49. ISSN 0890-9369 (Print)

Grinevich, V., Brecht, M., Osten, P. (2005) Monosynaptic pathway from rat vibrissa motor cortex to facial motor neurons revealed by lentivirus-based axonal tracing. Journal of Neuroscience, 25 (36). pp. 8250-8. ISSN 0270-6474

H

Haber, D. A., Bell, D. W., Sordella, R., Kwak, E. L., Godin-Heymann, N., Sharma, S. V., Lynch, T. J., Settleman, J. (2005) Molecular targeted therapy of lung cancer: EGFR mutations and response to EGFR inhibitors. Cold Spring Harbor Symposia on Quantitative Biology, 70. pp. 419-26. ISSN 0091-7451

Hall, P. A., Lowe, S. W. (2005) Molecular and cellular themes in cancer research: II. Journal of Pathology, 205 (2). pp. 121-122. ISSN 0022-3417

Hansen, K. R., Burns, G., Mata, J., Volpe, T. A., Martienssen, R. A., Bahler, J., Thon, G. (2005) Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Molecular and Cellular Biology, 25 (2). pp. 590-601. ISSN 0270-7306

Harwell, C., Burbach, B., Svoboda, K., Nedivi, E. (2005) Regulation of cpg15 expression during single whisker experience in the barrel cortex of adult mice. Journal of Neurobiology, 65 (1). pp. 85-96. ISSN 0022-3034

Hastings, M. L., Resta, N., Traum, D., Stella, A., Guanti, G., Krainer, A. R. (2005) An LKB1 AT-AC intron mutation causes Peutz-Jeghers syndrome via splicing at noncanonical cryptic splice sites. Nat Struct Mol Biol, 12 (1). pp. 54-9. ISSN 1545-9993 (Print)

He, L., Thomson, J. M., Hemann, M. T., Hernando-Monge, E., Mu, D., Goodson, S., Powers, S., Cordon-Cardo, C., Lowe, S. W., Hannon, G. J., Hammond, S. M. (2005) A microRNA polycistron as a potential human oncogene. Nature, 435 (7043). pp. 828-33. ISSN 0028-0836

Helmrich, A., Lee, S., O'Brien, P., Dorken, B., Lowe, S. W., Schrock, E., Schmitt, C. A. (2005) Recurrent chromosomal aberrations in INK4a/ARF defective primary lymphomas predict drug responses in vivo. Oncogene, 24 (26). pp. 4174-4182. ISSN 0950-9232

Hemann, M. T., Bric, A., Teruya-Feldstein, J., Herbst, A., Nilsson, J. A., Cordon-Cardo, C., Cleveland, J. L., Tansey, W. P., Lowe, S. W. (2005) Evasion of the p53 tumour surveillance network by tumour-derived MYC mutants. Nature, 436 (7052). pp. 807-11. ISSN 1476-4687 (Electronic)

Henn, F. A., Vollmayr, B. (2005) Stress models of depression: forming genetically vulnerable strains. Neurosci Biobehav Rev, 29 (4-5). pp. 799-804. ISSN 0149-7634 (Print)0149-7634 (Linking)

Herbst, A., Hemann, M. T., Tworkowski, K. A., Salghetti, S. E., Lowe, S. W., Tansey, W. P. (2005) A conserved element in Myc that negatively regulates its proapoptotic activity. EMBO Rep, 6 (2). pp. 177-83. ISSN 1469-221X (Print)

Hicks, J. B., Muthuswamy, L., Krasnitz, A., Navin, N. E., Riggs, M., Grubor, V., Esposito, D., Alexander, J., Troge, J. E., Wigler, M. H., Maner, S., Lundin, P., Zetterberg, A. (2005) High-resolution ROMA CGH and FISH analysis of aneuploid and diploid breast tumors. Cold Spring Harb Symp Quant Biol, 70. pp. 51-63. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

Hill, B. T., Skowronski, J. (2005) Human N-myristoyltransferases form stable complexes with lentiviral nef and other viral and cellular substrate proteins. J Virol, 79 (2). pp. 1133-41. ISSN 0022-538X (Print)

Hirano, T. (2005) Cell biology - Holding sisters for repair. Nature, 433 (7025). pp. 467-468. ISSN 0028-0836

Hirano, T. (2005) Condensins: organizing and segregating the genome. Curr Biol, 15 (7). R265-75. ISSN 0960-9822 (Print)

Hirano, T. (2005) SMC proteins and chromosome mechanics: from bacteria to humans. Philos Trans R Soc Lond B Biol Sci, 360 (1455). pp. 507-14. ISSN 0962-8436 (Print)

Holtmaat, A. J. G. D., Trachtenberg, J. T., Wilbrecht, L., Shepherd, G. M., Zhang, Xi., Knott, G. W., Svoboda, Karel. (2005) Transient and persistent dendritic spines in the neocortex in vivo. Neuron, 45 (2). pp. 279-91. ISSN 0896-6273 (Print)

Hong, W., Nakazawa, M., Chen, Y. Y., Kori, R., Vakoc, C. R., Rakowski, C., Blobel, G. A. (2005) FOG-1 recruits the NuRD repressor complex to mediate transcriptional repression by GATA-1. Embo Journal, 24 (13). pp. 2367-2378. ISSN 0261-4189

Hrecka, K., Swigut, T., Schindler, M., Kirchhoff, F., Skowronski, J. (2005) Nef proteins from diverse groups of primate lentiviruses downmodulate CXCR4 to inhibit migration to the chemokine stromal derived factor 1. J Virol, 79 (16). pp. 10650-9. ISSN 0022-538X (Print)

Hsu, H. C., Stillman, B., Xu, R. M. (2005) Structural basis for origin recognition complex 1 protein-silence information regulator 1 protein interaction in epigenetic silencing. Proc Natl Acad Sci U S A, 102 (24). pp. 8519-24. ISSN 0027-8424 (Print)

Huanca-Mamani, W., Garcia-Aguilar, M., Leon-Martinez, G., Grossniklaus, U., Vielle-Calzada, J. P. (2005) CHR11, a chromatin-remodeling factor essential for nuclear proliferation during female gametogenesis in Arabidopsis thaliana. Proc Natl Acad Sci U S A, 102 (47). pp. 17231-17236. ISSN 0027-8424

Huang, Z. J., Chattopadhyaya, B., Di Cristo, G., Wu, C. Z., Palmiter, R. (2005) Regulation of axon growth and inhibitory synapses formation by GAD67-mediated GABA signaling: Implications in schizophrenia pathogenesis. Neuropsychopharmacology, 30 (S1). S2-S3. ISSN 0893-133X

Hyman, T., Watanabe, Y., Yanagida, M., Hirano, T. (2005) Shugoshin protects cohesin complexes at centromeres - Discussion. Philosophical Transactions of the Royal Society B-Biological Sciences, 360 (1455). p. 521. ISSN 0962-8436

I

Ihrie, R. A., Marques, M. R., Nguyen, B. T., Horner, J. S., Papazoglu, C., Bronson, R. T., Mills, A. A., Attardi, L. D. (2005) Perp is a p63-regulated gene essential for epithelial integrity. Cell, 120 (6). pp. 843-856. ISSN 0092-8674

Iijima-Ando, K., Wu, P., Drier, E. A., Iijima, K., Yin, J. C. P. (2005) cAMP-response element-binding protein and heat-shock protein 70 additively suppress polyglutamine-mediated toxicity in Drosophila. Proc Natl Acad Sci U S A, 102 (29). pp. 10261-6. ISSN 0027-8424 (Print)

Immler, S., Fesen, R. A., Van Dyk, S. D., Weiler, K. W., Petre, R., Lewin, W. H. G., Pooley, D., Pietsch, W., Aschenbach, B., Hammell, M. C., Rudie, G. C. (2005) Late-time X-ray, UV, and optical monitoring of supernova 1979C. Astrophysical Journal, 632 (1). pp. 283-293. ISSN 0004-637X

Inanobe, A., Furukawa, H., Gouaux, E. (2005) Mechanism of partial agonist action at the NR1 subunit of NMDA receptors. Neuron, 47 (1). pp. 71-84. ISSN 0896-6273 (Print)0896-6273 (Linking)

International Rice Genome Sequencing Project, (2005) The map-based sequence of the rice genome. Nature, 436 (7052). pp. 793-800. ISSN 0028-0836

J

Jackson, D. P. (2005) Transcription Factor Movement Through Plasmadesmata. In: Plasmodesmata. Blackwell Publishing Ltd, pp. 113-134. ISBN 9780470988572

Jacobs, W. B., Govoni, G., Ho, D., Atwal, J. K., Barnabe-Heider, F., Keyes, W. M., Mills, A. A., Miller, F. D., Kaplan, D. R. (2005) p63 is an essential proapoptotic protein during neural development. Neuron, 48 (5). pp. 743-756. ISSN 0896-6273

Jaiswal, P., Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L. D., Ware, D. H., Zapata, F. (2005) Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comp Funct Genomics, 6 (7-8). pp. 388-97. ISSN 1531-6912 (Print)

Javaherian, A., Cline, H. T. (2005) Coordinated motor neuron axon growth and neuromuscular synaptogenesis are promoted by CPG15 in vivo. Neuron, 45 (4). pp. 505-512. ISSN 0896-6273

Jeon, Y., Bekiranov, S., Karnani, N., Kapranov, P., Ghosh, S., MacAlpine, D., Lee, C., Deog, S. H., Gingeras, T. R., Dutta, A. (2005) Temporal profile of replication of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America, 102 (18). pp. 6419-6424. ISSN 00278424 (ISSN)

Jiang, B., Huang, Z. J., Morales, B., Kirkwood, A. (2005) Maturation of GABAergic transmission and the timing of plasticity in visual cortex. Brain Research Reviews, 50 (1). pp. 126-133. ISSN 01650173 (ISSN)

Jiang, W., Sordella, R., Chen, G. C., Hakre, S., Roy, A. L., Settleman, J. (2005) An FF domain-dependent protein interaction mediates a signaling pathway for growth factor-induced gene expression. Molecular Cell, 17 (1). pp. 23-35. ISSN 1097-2765

Jobanputra, V., Sebat, J., Troge, J., Chung, W., Anyane-Yeboa, K., Wigler, M. H., Warburton, D. (2005) Application of ROMA (representational oligonucleotide microarray analysis) to patients with cytogenetic rearrangements. Genetics in Medicine, 7 (2). pp. 111-118. ISSN 1098-3600

Jones, P. A., Martienssen, R. A. (2005) A Blueprint for a Human Epigenome Project: The AACR Human Epigenome Workshop. Cancer Res, 65 (24). pp. 11241-6. ISSN 0008-5472 (Print)

Joshi-Tope, G., Gillespie, M., Vastrik, I., D'Eustachio, P., Schmidt, E., de Bono, B., Jassal, B., Gopinath, G. R., Wu, G. R., Matthews, L., Lewis, S., Birney, E., Stein, L. D. (2005) Reactome: a knowledgebase of biological pathways. Nucleic Acids Res, 33 (Databa). D428-32. ISSN 1362-4962 (Electronic)

K

Kabir, M. A., Kaminska, J., Segel, G. B., Bethlendy, G., Lin, P., Della Seta, F., Blegen, C., Swiderek, K. M., Zoladek, T., Arndt, K. T., Sherman, F. (2005) Physiological effects of unassembled chaperonin Cct subunits in the yeast Saccharomyces cerevisiae. Yeast, 22 (3). pp. 219-239. ISSN 0749-503X

Kannan, N., Neuwald, A. F. (2005) Did protein kinase regulatory mechanisms evolve through elaboration of a simple structural component? J Mol Biol, 351 (5). pp. 956-72. ISSN 0022-2836 (Print)

Kapranov, P., Drenkow, J., Cheng, J., Long, J., Helt, G., Dike, S., Gingeras, T. R. (2005) Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays. Genome Research, 15 (7). pp. 987-997. ISSN 10889051 (ISSN)

Karpova, A. Y., Tervo, D. G., Gray, N. W., Svoboda, K. (2005) Rapid and reversible chemical inactivation of synaptic transmission in genetically targeted neurons. Neuron, 48 (5). pp. 727-35. ISSN 0896-6273 (Print)

Katari, M.t S., Balija, V., Wilson, R. K., Martienssen, R. A., McCombie, W. R. (2005) Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research, 15 (4). pp. 496-504. ISSN 10889051 (ISSN)

Kato, H., Goto, D. B., Martienssen, R. A., Urano, T., Furukawa, K., Murakami, Y. (2005) RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science, 309 (5733). pp. 467-469. ISSN 00368075 (ISSN)

Keyes, William M., Wu, Ying, Vogel, Hannes, Guo, Xuecui, Lowe, Scott W., Mills, Alea A. (2005) p63 deficiency activates a program of cellular senescence and leads to accelerated aging. Genes Dev, 19 (17). pp. 1986-99. ISSN 0890-9369 (Print)

Kidner, C. A., Martienssen, R. A. (2005) The developmental role of microRNA in plants. Current Opinion in Plant Biology, 8 (1). pp. 38-44. ISSN 1369-5266

Kidner, C. A., Martienssen, R. A. (2005) The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Dev Biol, 280 (2). pp. 504-17. ISSN 0012-1606 (Print)

Kim, J. Y., Rim, Y., Wang, L., Jackson, D. P. (2005) A novel cell-to-cell trafficking assay indicates that the KNOX homeodomain is necessary and sufficient for intercellular protein and mRNA trafficking. Genes & Development, 19 (7). pp. 788-793. ISSN 0890-9369

Kim, Seon-Won, Moon, Jun-Yeon, Jung, Jin-Hee, Chen, Xiongyan, Shi, Chunlin, Rim, Yeong-Gil, Kwon, Hey-Jin, Jackson, David, Datla, Raju, Joliot, Alain, Kim, Jae-Yean (2005) Intercellular Trafficking of Homeodomain Proteins. The Plant Pathology Journal, 21 (1). pp. 21-26.

Kim, Y. S., Kim, J. M., Jung, D. L., Kang, J. E., Lee, S., Kim, J. S., Seol, W., Shin, H. C., Kwon, H. S., Van Lint, C., Hernandez, N., Hur, M. W. (2005) Artificial zinc finger fusions targeting Sp1-binding sites and the trans-activator-responsive element potently repress transcription and replication of HIV-1. Journal of Biological Chemistry, 280 (22). pp. 21545-21552. ISSN 0021-9258

Klejman, M. P., Zhao, X. M., van Schaik, F. M. A., Herr, W., Timmers, H. T. M. (2005) Mutational analysis of BTAF1-TBP interaction: BTAF1 can rescue DNA-binding defective TBP mutants. Nucleic Acids Research, 33 (17). pp. 5426-5436. ISSN 0305-1048

Kortmansky, J., Shah, M. A., Kaubisch, A., Weyerbacher, A., Yi, S., Tong, W., Sowers, R., Gonen, M., O'Reilly, E., Kemeny, N., Ilson, D. I., Saltz, L. B., Maki, R. G., Kelsen, D. P., Schwartz, G. K. (2005) Phase I trial of the cyclin-dependent kinase inhibitor and protein kinase C inhibitor 7-hydroxystaurosporine in combination with Fluorouracil in patients with advanced solid tumors. J Clin Oncol, 23 (9). pp. 1875-84. ISSN 0732-183X (Print)0732-183X (Linking)

Koulakov, A. A., Rinberg, D. A., Tsigankov, D. N. (2005) How to find decision makers in neural networks. Biological Cybernetics, 94 (1). pp. 86-88. ISSN 03401200

Kresovich, S., Barbazuk, B., Bedell, J. A., Borrell, A., Buell, C. R., Burke, J., Clifton, S., Cordonnier-Pratt, M. M., Cox, S., Dahlberg, J., Erpelding, J., Fulton, T. M., Fulton, B., Fulton, L., Gingle, A. R., Hash, C. T., Huang, Y., Jordan, D., Klein, P. E., Klein, R. R., Magalhaes, J., McCombie, R., Moore, P., Mullet, J. E., Ozias-Akins, P., Paterson, A. H., Porter, K., Pratt, L., Roe, B., Rooney, W., Schnable, P. S., Stelly, D. M., Tuinstra, M., Ware, D., Warek, U. (2005) Toward sequencing the sorghum genome. A U.S. National Science Foundation-sponsored workshop report. Plant Physiology, 138 (4). pp. 1898-1902. ISSN 00320889 (ISSN)

Kurita, T., Cunha, G. R., Robboy, S. J., Mills, A. A., Medina, R. T. (2005) Differential expression of p63 isoforms in female reproductive organs. Mechanisms of Development, 122 (9). pp. 1043-1055. ISSN 0925-4773

Kwak, E. L., Sordella, R., Bell, D. W., Godin-Heymann, N., Okimoto, R. A., Brannigan, B. W., Harris, P. L., Driscoll, D. R., Fidias, P., Lynch, T. J., Rabindran, S. K., McGinnis, J. P., Wissner, A., Sharma, S. V., Isselbacher, K. J., Settleman, J., Haber, D. A. (2005) Irreversible inhibitors of the EGF receptor may circumvent acquired resistance to gefitinib. Proceedings of the National Academy of Sciences of the United States of America, 102 (21). pp. 7665-70. ISSN 0027-8424

L

Lee, D. Y., Ezhkova, E., Li, B., Pattenden, S. G., Tansey, W. P., Workman, J. L. (2005) The proteasome regulatory particle alters the SAGA coactivator to enhance its interactions with transcriptional activators. Cell, 123 (3). pp. 423-436. ISSN 0092-8674

Lee, J. S. M., Katari, G., Sachidanandam, R. (2005) GObar: a gene ontology based analysis and visualization tool for gene sets. BMC Bioinformatics, 6. p. 189. ISSN 1471-2105 (Electronic)

Li, F., Goto, D. B., Zaratiegui, M., Tang, X., Martienssen, R., Cande, W. Z. (2005) Two novel proteins, Dos1 and Dos2, interact with Rik1 to regulate heterochromatic RNA interference and histone modification. Current Biology, 15 (16). pp. 1448-1457. ISSN 0960-9822

Li, Z., Burrone, J., Tyler, W. J., Hartman, K. N., Albeanu, D. F., Murthy, V. N. (2005) Synaptic vesicle recycling studied in transgenic mice expressing synaptopHluorin. Proceedings of the National Academy of Sciences of the United States of America, 102 (17). pp. 6131-6136. ISSN 00278424 (ISSN)

Lin, X. M., Fenn, E., Veenstra, R. D. (2005) A cytoplasmic amino terminal lysine residue of connexin40 that affects spermine block but not channel conductance. Biophysical Journal, 88 (1). 469A-469A. ISSN 0006-3495

Lippman, Z. B., Gendrel, A. V., Colot, V., Martienssen, R. A. (2005) Profiling DNA methylation patterns using genomic tiling microarrays. Nat Methods, 2 (3). pp. 219-24. ISSN 1548-7091 (Print)

Littlepage, L. E., Egeblad, M., Werb, Z. (2005) Coevolution of cancer and stromal cellular responses. Cancer Cell, 7 (6). pp. 499-500. ISSN 15356108 (ISSN)

Liu, J., Valencia-Sanchez, M. A., Hannon, G. J., Parker, R. (2005) MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nature Cell Biology, 7 (7). pp. 719-23. ISSN 1465-7392

Liu, J. D., Rivas, F. V., Wohlschlegel, J., Yates, J. R., Parker, R., Hannon, G. J. (2005) A role for the P-body component GW182 in microRNA function. Nature Cell Biology, 7 (12). pp. 1261-1266. ISSN 1465-7392

Losada, A., Hirano, T. (2005) Dynamic molecular linkers of the genome: the first decade of SMC proteins. Genes & Development, 19 (11). pp. 1269-1287. ISSN 0890-9369

Losada, A., Yokochi, T., Hirano, T. (2005) Functional contribution of Pds5 to cohesin-mediated cohesion in human cells and Xenopus egg extracts. J Cell Sci, 118 (Pt 10). pp. 2133-41. ISSN 0021-9533 (Print)

Lowe, S. W. (2005) Evading p53 action during tumor development and therapy. Breast Cancer Research, 7. S12-S12. ISSN 1465-5411

Lowe, S. W. (2005) Special issue: Abstracts of ISCO 2005, Belfast, Northern Ireland, UK, 5-8 April 2005. Cellular Oncology, 27 (2). pp. 93-160. ISSN 1570-5870

Luna, R., Hernandez, A., Brody, C. D., Romo, R. (2005) Neural codes for perceptual discrimination in primary somatosensory cortex. Nature Neuroscience, 8 (9). pp. 1210-1219. ISSN 1097-6256

Lyons, S. K. (2005) Advances in imaging mouse tumour models in vivo. J Pathol, 205 (2). pp. 194-205. ISSN 0022-3417 (Print)0022-3417 (Linking)

M

Machens, C. K., Gollisch, T., Kolesnikova, O., Herz, A. V. (2005) Testing the efficiency of sensory coding with optimal stimulus ensembles. Neuron, 47 (3). pp. 447-56. ISSN 0896-6273 (Print)

Machens, C. K., Romo, R., Brody, C. D. (2005) Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science, 307 (5712). pp. 1121-4. ISSN 1095-9203 (Electronic)

Madlung, A., Tyagi, A. P., Watson, B., Jiang, H. M., Kagochi, T., Doerge, R. W., Martienssen, R. A., Comai, L. (2005) Genomic changes in synthetic Arabidopsis polyploids. Plant Journal, 41 (2). pp. 221-230. ISSN 0960-7412

Maki, R. G., Kraft, A. S., Scheu, K., Yamada, J., Wadler, S., Antonescu, C. R., Wright, J. J., Schwartz, G. K. (2005) A multicenter Phase II study of bortezomib in recurrent or metastatic sarcomas. Cancer, 103 (7). pp. 1431-8. ISSN 0008-543X (Print)0008-543X (Linking)

Malinow, R., Rumpel, S., Zador, A. M., Ledoux, J. (2005) AMPA receptor trafficking and GluR1 - Response. Science, 310 (5746). pp. 234-235. ISSN 0036-8075

Mandell, J. G., Bahler, J., Volpe, T. A., Martienssen, R. A., Cech, T. R. (2005) Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biology, 6 (1). ISSN 1465-6914

Maniar, H. D., Mitra, P. P. (2005) The concentration problem for vector fields. In: 5th International Conference on Bioelectromagnetism & Symposium on Noninvasive Functional Source Imaging, Minneapolis.

Manoso, M. W., Healey, J. H., Boland, P. J., Athanasian, E. A., Maki, R. G., Huvos, A. G., Morris, C. D. (2005) De novo osteogenic sarcoma in patients older than forty - Benefit of multimodality therapy. Clinical Orthopaedics and Related Research, &NA; (438). pp. 110-115. ISSN 0009-921x

Margulies, C., Tully, T., Dubnau, J. T. (2005) Deconstructing memory in Drosophila. Current Biology, 15 (17). R700-13. ISSN 0960-9822

Martienssen, R. A., Zaratiegui, M., Goto, D. B. (2005) RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. Trends Genet, 21 (8). pp. 450-6. ISSN 0168-9525 (Print)

Martienssen, Robert A., Doerge, R. W., Colot, Vincent (2005) Epigenomic mapping in Arabidopsis using tiling microarrays. Chromosome Res, 13 (3). pp. 299-308. ISSN 0967-3849 (Print)

Matsumoto, T., Wu, J. Z., Kanamori, H., Katayose, Y., Fujisawa, M., Namiki, N., Mizuno, H., Yamamoto, K., Antonio, B. A., Baba, T., Sakata, K., Nagamura, Y., Aoki, H., Arikawa, K., Arita, K., Bito, T., Chiden, Y., Fujitsuka, N., Fukunaka, R., Hamada, M., Harada, C., Hayashi, A., Hijishita, S., Honda, M., Hosokawa, S., Ichikawa, Y., Idonuma, A., Iijima, M., Ikeda, M., Ikeno, M., Ito, K., Ito, S., Ito, T., Ito, Y., Ito, Y., Iwabuchi, A., Kamiya, K., Karasawa, W., Kurita, K., Katagiri, S., Kikuta, A., Kobayashi, H., Kobayashi, N., Machita, K., Maehara, T., Masukawa, M., Mizubayashi, T., Mukai, Y., Nagasaki, H., Nagata, Y., Naito, S., Nakashima, M., Nakama, Y., Nakamichi, Y., Nakamura, M., Meguro, A., Negishi, M., Ohta, I., Ohta, T., Okamoto, M., Ono, N., Saji, S., Sakaguchi, M., Sakai, K., Shibata, M., Shimokawa, T., Song, J. Y., Takazaki, Y., Terasawa, K., Tsugane, M., Tsuji, K., Ueda, S., Waki, K., Yamagata, H., Yamamoto, M., Yamamoto, S., Yamane, H., Yoshiki, S., Yoshihara, R., Yukawa, K., Zhong, H. S., Yano, M., Sasaki, T., Yuan, Q. P., Shu, O. T., Liu, J., Jones, K. M., Gansberger, K., Moffat, K., Hill, J., Bera, J., Fadrosh, D., Jin, S. H., Johri, S., Kim, M., Overton, L., Reardon, M., Tsitrin, T., Vuong, H., Weaver, B. (2005) The map-based sequence of the rice genome. Nature, 436 (7052). pp. 793-800. ISSN 0028-0836

May, B. P., Lippman, Z. B., Fang, Y., Spector, D. L., Martienssen, R. A. (2005) Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet, 1 (6). e79. ISSN 1553-7404 (Electronic)

McGettigan, J., McLennan, R. K. J., Broderick, K. E., Kean, L., Allan, A. K., Cabrero, P., Regulski, M. R., Pollock, V. P., Gould, G. W., Davies, S. A., Dow, J. A. T. (2005) Insect renal tubules constitute a cell-autonomous immune system that protects the organism against bacterial infection. Insect Biochemistry and Molecular Biology, 35 (7). pp. 741-754. ISSN 0965-1748

Meng, T. C., Hsu, S. F., Tonks, N. K. (2005) Development of a modified in-gel assay to identify protein tyrosine phosphatases that are oxidized and inactivated in vivo. Methods, 35 (1). pp. 28-36. ISSN 1046-2023

Menon, M., Schroeder, J. B., Riske, F. (2005) Evaluation of Depth Filtration for the Clarification of Perfusion Mammalian Cell Culture Harvest. In: ACS National Conference 229, San Diego, CA..

Menzer, D., Hudson, A. E., Schiff, N. D., Bokil, H., Pesaran, B., Purpura, K. P., Mitra, P. P. (2005) Task dependent modulation of monkey frontal lobe field potentials during visual working memory. Journal of Cognitive Neuroscience. p. 146. ISSN 0898-929X

Miller, R. D., Phillips, M. S., Jo, I., Donaldson, M. A., Studebaker, J. F., Addleman, N., Alfisi, S. V., Ankener, W. M., Bhatti, H. A., Callahan, C. E., Carey, B. J., Conley, C. L., Cyr, J. M., Derohannessian, V., Donaldson, R. A., Elosua, C., Ford, S. E., Forman, A. M., Gelfand, C. A., Grecco, N. M., Gutendorf, S. M., Hock, C. R., Hozza, M. J., Hur, S., In, S. M., Jackson, D. L., Jo, S. A., Jung, S. C., Kim, S., Kimm, K., Kloss, E. F., Koboldt, D. C., Kuebler, J. M., Kuo, F. S., Lathrop, J. A., Lee, J. K., Leis, K. L., Livingston, S. A., Lovins, E. G., Lundy, M. L., Maggan, S., Minton, M., Mockler, M. A., Morris, D. W., Nachtman, E. P., Oh, B., Park, C., Park, C. W., Pavelka, N., Perkins, A. B., Restine, S. L., Sachidanandam, R., Reinhart, A. J., Scott, K. E., Restine, S. L., Sachidanandam, R., Reinhart, A. J., Scott, K. E., Shah, G. J., Tate, J. M., Varde, S. A., Walters, A., White, J. R., Yoo, Y. K., Lee, J. E., Boyce-Jacino, M. T., Kwok, P. Y. (2005) High-density single-nucleotide polymorphism maps of the human genome. Genomics, 86 (2). pp. 117-126. ISSN 0888-7543

Mills, A. A. (2005) p53: link to the past, bridge to the future. Genes Dev, 19 (18). pp. 2091-9. ISSN 0890-9369 (Print)

Mitra, P. P. (2005) Bending a slab of neural tissue. http://arXiv:q-bio/0510034v2 [q-bio.TO]. pp. 1-6.

Mitra, P. P., Maniar, H. D. (2005) Local basis expansions for MEG Source Localization. In: 5th International Conference on Bioelectromagnetism & Symposium on Noninvasive Functional Source Imaging, Minneapolis.

Morimoto-Tomita, M., Uchimura, K., Bistrup, A., Lum, D. H., Egeblad, M., Boudreau, N., Werb, Z., Rosen, S. D. (2005) Sulf-2, a proangiogenic heparan sulfate endosulfatase, is upregulated in breast cancer. Neoplasia, 7 (11). pp. 1001-1010. ISSN 15228002 (ISSN)

Muratani, M. (2005) Regulation of Gene Expression by the Ubiquitin-Proteasome System. PhD thesis, Cold Spring Harbor Laboratory.

Muratani, Masafumi, Kung, Charles, Shokat, Kevan M., Tansey, William P. (2005) The F box protein Dsg1/Mdm30 is a transcriptional coactivator that stimulates Gal4 turnover and cotranscriptional mRNA processing. Cell, 120 (6). pp. 887-899. ISSN 0092-8674

Murchison, E. P., Partridge, J. F., Tam, O. H., Cheloufi, S., Hannon, G. J. (2005) Characterization of Dicer-deficient murine embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America, 102 (34). pp. 12135-40. ISSN 0027-8424

Muthumani, K., Choo, A. Y., Hwang, D. S., Dayes, N. S., Chattergoon, M., Mayilvahanan, S., Thieu, K. P., Buckley, P. T., Emmanuel, J., Premkumar, A., Weiner, D. B. (2005) HIV-1 viral protein-R (VPR) protects against lethal superantigen challenge while maintaining homeostatic T cell levels in vivo. Molecular Therapy, 12 (5). pp. 910-921. ISSN 1525-0016

Muthumani, K., Hwang, D. S., Choo, A. Y., Mayilvahanan, S., Dayes, N. S., Thieu, K. P., Weiner, D. B. (2005) HIV-1 Vpr inhibits the maturation and activation of macrophages and dendritic cells in vitro. International Immunology, 17 (2). pp. 103-116. ISSN 0953-8178

Muthuswamy, S. K. (2005) Regulation of epithelial cell polarity during carcinogenesis. Breast Cancer Research, 7. S7-S7. ISSN 1465-5411

N

Nakayama, N., Arroyo, J. M., Simorowski, J., May, B., Martienssen, R., Irish, V. F. (2005) Gene trap lines define domains of gene regulation in Arabidopsis petals and stamens. Plant Cell, 17 (9). pp. 2486-2506. ISSN 1040-4651

Narita, M., Lowe, S. W. (2005) Senescence comes of age. Nature Medicine, 11 (9). pp. 920-922. ISSN 1078-8956

Neuwald, Andrew F. (2005) Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases. Nucleic Acids Res, 33 (11). pp. 3614-28. ISSN 1362-4962 (Electronic)

Newey, S. E., Velamoor, V., Govek, E.-E., Van Aelst, L. (2005) Rho GTPases, dendritic structure, and mental retardation. J Neurobiol, 64 (1). pp. 58-74. ISSN 0022-3034 (Print)

O

Olson, A., Sheth, N., Lee, J., Hannon, G. J., Sachidanandam, R. (2005) Rnai codex - a comprehensive RNAi resource. Briefings in Bioinformatics, 6 (1). pp. 104-106. ISSN 1467-5463

Olson, A. J., Tully, T., Sachidanandam, R. (2005) GeneSeer: a sage for gene names and genomic resources. BMC Genomics, 6 (1). p. 134. ISSN 1471-2164 (Electronic)

Oviedo, H., Reyes, A. D. (2005) Variation of input-output properties along the somatodendritic axis of pyramidal neurons. Journal of Neuroscience, 25 (20). pp. 4985-4995. ISSN 0270-6474

P

Packer, M. A., Hemish, Jill, Mignone, J. L., John, S., Pugach, I., Enikolopov, Grigori (2005) Transgenic mice overexpressing nNOS in the adult nervous system. Cell Mol Biol (Noisy-le-grand), 51 (3). pp. 269-77. ISSN 1165-158X (Electronic)

Pan, X., Li, Y., Stein, L. D. (2005) Site preferences of insertional mutagenesis agents in Arabidopsis. Plant Physiol, 137 (1). pp. 168-75. ISSN 0032-0889 (Print)

Pan, X. K., Stein, L. D., Brendel, V. (2005) SynBrowse: a synteny browser for comparative sequence analysis. Bioinformatics, 21 (17). pp. 3461-3468. ISSN 1367-4803

Pang, A., Smith, A. D., Nuin, P. A. S., Tillier, E. R. (2005) SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution. BMC Bioinformatics, 6. ISSN 1471-2105

Pearlmutter, B. A., Asari, H., Zador, A. M. (2005) Neuronal predictions of sparse linear representations. In: 4th European Congress on Acoustics. Hirzel, L147-L152.

Phelps-Durr, T. L., Thomas, J., Vahab, Phil, Timmermans, M.C.P. (2005) Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis. Plant Cell, 17 (11). pp. 2886-98. ISSN 1040-4651 (Print)

Pillai-Nair, N., Panicker, A. K., Rodriguiz, R. M., Gilmore, K. L., Demyanenko, G. P., Huang, J. Z., Wetsel, W. C., Maness, P. F. (2005) Neural cell adhesion molecule-secreting transgenic mice display abnormalities in GABAergic interneurons and alterations in behavior. Journal of Neuroscience, 25 (18). pp. 4659-4671. ISSN 0270-6474

Portera-Cailliau, Carlos, Weimer, Robby M., De Paola, Vincenzo, Caroni, Pico, Svoboda, Karel (2005) Diverse modes of axon elaboration in the developing neocortex. PLoS Biol, 3 (8). e272. ISSN 1545-7885 (Electronic)

Prakash, S., Sarran, L., Socci, N., DeMatteo, R. P., Eisenstat, J., Greco, A. M., Maki, R. G., Wexler, L. H., LaQuaglia, M. P., Besmer, P., Antonescu, C. R. (2005) Gastrointestinal stromal tumors in children and young adults: a clinicopathologic, molecular, and genomic study of 15 cases and review of the literature. J Pediatr Hematol Oncol, 27 (4). pp. 179-87. ISSN 1077-4114 (Print)1077-4114 (Linking)

Prasanth, K. V. , Prasanth, S. G., Xuan, Z. Y., Hearn, S., Freier, S. M., Bennett, C. F., Zhang, M. Q., Spector, D. L. (2005) Regulating gene expression through RNA nuclear retention. Cell, 123 (2). pp. 249-263. ISSN 0092-8674

Prasanth, K. V. , Spector, D. L. (2005) The cell nucleus. In: Encyclopedia of life sciences. John Wiley & Sons, London ; New York. ISBN 0470016175

Prawitt, D., Enklaar, T., Gartner-Rupprecht, B., Spangenberg, C., Oswald, M., Lausch, E., Schmidtke, P., Reutzel, D., Fees, S., Lucito, R., Korzon, M., Brozek, L., Limon, J., Housman, D. E., Pelletier, J., Zabel, B. (2005) Microdeletion of target sites for insulator protein CTCF in a chromosome 11p15 imprinting center in Beckwith-Wiedemann syndrome and Wilms' tumor. Proc Natl Acad Sci U S A, 102 (11). pp. 4085-4090. ISSN 0027-8424

Priel, A., Kolleker, A., Ayalon, G., Gillor, M., Osten, P., Stern-Bach, Y. (2005) Stargazin reduces desensitization and slows deactivation of the AMPA-type glutamate receptors. Journal of Neuroscience, 25 (10). pp. 2682-6. ISSN 0270-6474

Q

Qi, Yijun, Denli, Ahmet M., Hannon, Gregory J. (2005) Biochemical specialization within Arabidopsis RNA silencing pathways. Mol Cell, 19 (3). pp. 421-8. ISSN 1097-2765 (Print)

Qi, Yijun, Hannon, Gregory J. (2005) Uncovering RNAi mechanisms in plants: biochemistry enters the foray. FEBS Lett, 579 (26). pp. 5899-903. ISSN 0014-5793 (Print)

Qin, Y., Zhu, Y. H., Baumgart, J. P., Stornetta, R. L., Seidenman, K., Mack, V., van Aelst, L., Zhu, J. J. (2005) State-dependent Ras signaling and AMPA receptor trafficking. Genes & Development, 19 (17). pp. 2000-2015. ISSN 0890-9369

R

Rabinowicz, P. D., Citek, R., Budiman, M. A., Nunberg, A., Bedell, J. A., Lakey, N., O'Shaughnessy, A. L., Nascimento, L. U., McCombie, W. R., Martienssen, R. A. (2005) Differential methylation of genes and repeats in land plants. Genome Research, 15 (10). pp. 1431-1440. ISSN 1088-9051

Revyakin, Andrey, Ebright, Richard H., Strick, Terence R. (2005) Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments. Nat Methods, 2 (2). pp. 127-38. ISSN 1548-7091 (Print)

Ridder, S., Chourbaji, S., Hellweg, R., Urani, A., Zacher, C., Schmid, W., Zink, M., Hortnagl, H., Flor, H., Henn, F. A., Schutz, G., Gass, P. (2005) Mice with genetically altered glucocorticoid receptor expression show altered sensitivity for stress-induced depressive reactions. J Neurosci, 25 (26). pp. 6243-50. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Rivas, Fabiola V., Tolia, Nirja H., Song, Ji-Joon, Aragon, Juan P., Liu, Jidong, Hannon, Gregory J., Joshua-Tor, Leemor (2005) Purified Argonaute2 and an siRNA form recombinant human RISC. Nat Struct Mol Biol, 12 (4). pp. 340-9. ISSN 1545-9993 (Print)

Roca, Xavier, Sachidanandam, Ravi, Krainer, Adrian R. (2005) Determinants of the inherent strength of human 5' splice sites. Rna, 11 (5). pp. 683-98. ISSN 1355-8382 (Print)

Ronemus, M., Martienssen, R. (2005) RNA interference - Methylation mystery. Nature, 433 (7025). pp. 472-473. ISSN 0028-0836

Rumpel, S., LeDoux, J., Zador, A. M., Malinow, R. (2005) Postsynaptic receptor trafficking underlying a form of associative learning. Science, 308 (5718). pp. 83-8. ISSN 1095-9203 (Electronic)

Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboue, P. A., Weng, W., Wilbur, W. J., Hatzivassiloglou, V., Friedman, C. (2005) GeneWays: A System for Extracting, Analyzing, Visualizing, and Integrating Molecular Pathway Data. In: Databasing the Brain: From Data to Knowledge (Neuroinformatics). Wiley. ISBN 9780471309215

S

Sachidanandam, Ravi (2005) RNAi as a bioinformatics consumer. Brief Bioinform, 6 (2). pp. 146-62. ISSN 1467-5463 (Print)

Sachs, N. A., Holmes, S. E., Cowell, J. K., Conroy, J., Nowak, N. J., McQuaid, D., Rossi, M. R., Gaile, D. P., Christian, S. L., Wigler, M. H., Sebat, J., Ross, C. A., DeLisi, L. E., Margolis, R. L. (2005) Assessment of schizophrenia genomes for DNA copy number alterations. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics, 138B (1). pp. 90-91. ISSN 1552-4841

Samuelson, A. V., Narita, M., Chan, H. M., Jin, J., de Stanchina, E., McCurrach, M. E., Narita, M., Fuchs, M., Livingston, D. M., Lowe, S. W. (2005) p400 is required for E1A to promote apoptosis. J Biol Chem, 280 (23). pp. 21915-23. ISSN 0021-9258 (Print)

Sanchis-Segura, C., Spanagel, R., Henn, F. A., Vollmayr, B. (2005) Reduced sensitivity to sucrose in rats bred for helplessness: a study using the matching law. Behav Pharmacol, 16 (4). pp. 267-70. ISSN 0955-8810 (Print)0955-8810 (Linking)

Sartorius, A., Henn, F. A. (2005) [Continuation ECT]. Psychiatr Prax, 32 (8). pp. 408-11. ISSN 0303-4259 (Print)0303-4259 (Linking)

Sartorius, A., Henn, F. A. (2005) [Treating depressive disorders with continuation electroconvulsive therapy]. Nervenarzt, 76 (11). pp. 1363-9. ISSN 0028-2804 (Print)0028-2804 (Linking)

Sartorius, A., Wolf, J., Henn, F. A. (2005) Lithium and ECT--concurrent use still demands attention: three case reports. World J Biol Psychiatry, 6 (2). pp. 121-4. ISSN 1562-2975 (Print)1562-2975 (Linking)

Saxena, A., Ma, B. C., Schramm, L., Hernandez, N. (2005) Structure-function analysis of the human TFIIB-related factor II protein reveals an essential role for the C-terminal domain in RNA polymerase III transcription. Molecular and Cellular Biology, 25 (21). pp. 9406-9418. ISSN 0270-7306

Scheffler, B., Walton, N. M., Lin, D. D., Goetz, A. K., Enikolopov, G., Roper, S. N., Steindler, D. A. (2005) Phenotypic and functional characterization of adult brain neuropoiesis. Proceedings of the National Academy of Sciences of the United States of America, 102 (26). pp. 9353-9358. ISSN 0027-8424

Scheinker, V., Fiore, G., Di Cristo, C., Di Cosmo, A., d'Ischia, M., Enikolopov, G., Palumbo, A. (2005) Nitric oxide synthase in the nervous system and ink gland of the cuttlefish Sepia officinalis: molecular cloning and expression. Biochem Biophys Res Commun, 338 (2). pp. 1204-15. ISSN 0006-291X (Print)

Schmitt, A., Bertsch, T., Henning, U., Tost, H., Klimke, A., Henn, F. A., Falkai, P. (2005) Increased serum S100B in elderly, chronic schizophrenic patients: negative correlation with deficit symptoms. Schizophr Res, 80 (2-3). pp. 305-13. ISSN 0920-9964 (Print)

Schones, D. E., Sumazin, P., Zhang, M. Q. (2005) Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics, 21 (3). pp. 307-13. ISSN 1367-4803 (Print)

Schramke, V., Sheedy, D. M., Denli, A. M., Bonila, C., Ekwall, K., Hannon, G. J., Allshire, R. C. (2005) Erratum (Retracted article): RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription (Nature (2005) 435 (1275-1279)). Nature, 437 (7061). p. 1057. ISSN 00280836 (ISSN)

Schramke, V., Sheedy, D. M., Denli, A. M., Bonila, C., Ekwall, K., Hannon, G. J., Allshire, R. C. (2005) RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription. Nature, 435 (7046). pp. 1275-1279. ISSN 0028-0836

Schuck, S., Stenlund, A. (2005) Assembly of a double hexameric helicase. Mol Cell, 20 (3). pp. 377-89. ISSN 1097-2765 (Print)

Schuck, S., Stenlund, A. (2005) Role of papillomavirus E1 initiator dimerization in DNA replication. J Virol, 79 (13). pp. 8661-4. ISSN 0022-538X (Print)

Schulze, T. G., Ohlraun, S., Czerski, P. M., Schumacher, J., Kassem, L., Deschner, M., Gross, M., Tullius, M., Heidmann, V., Kovalenko, S., Jamra, R. A., Becker, T., Leszczynska-Rodziewicz, A., Hauser, J., Illig, T., Klopp, N., Wellek, S., Cichon, S., Henn, F. A., McMahon, F. J., Maier, W., Propping, P., Nothen, M. M., Rietschel, M. (2005) Genotype-phenotype studies in bipolar disorder showing association between the DAOA/G30 locus and persecutory delusions: a first step toward a molecular genetic classification of psychiatric phenotypes. Am J Psychiatry, 162 (11). pp. 2101-8. ISSN 0002-953X (Print)0002-953X (Linking)

Sdek, P., Ying, H. Q., Chang, D. L. F., Qiu, W., Zheng, H. W., Touitou, R., Allday, M. J., Xiao, Z. X. J. (2005) MDM2 promotes proteasome-dependent ubiquitin-independent degradation of retinoblastoma protein. Molecular Cell, 20 (5). pp. 699-708. ISSN 1097-2765

Shepherd, G. M., Svoboda, K. (2005) Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. J Neurosci, 25 (24). pp. 5670-9. ISSN 0270-6474

Shepherd, G. M. G., Stepanyants, A., Bureau, I., Chklovskii, D., Svoboda, K. (2005) Geometric and functional organization of cortical circuits. Nature Neuroscience, 8 (6). pp. 782-790. ISSN 1097-6256

Siepel, A., Bejerano, G., Pedersen, J. S., Hinrichs, A. S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L. W., Richards, S., Weinstock, G. M., Wilson, R. K., Gibbs, R. A., Kent, W. J., Miller, W., Haussler, D. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res, 15 (8). pp. 1034-50. ISSN 1088-9051 (Print)1088-9051

Siepel, Adam, Haussler, David (2005) Phylogenetic Hidden Markov Models. In: Statistical Methods in Molecular Evolution. Statistics for Biology and Health . Springer New York, pp. 325-351. ISBN 978-0-387-22333-9

Sigloch, K., Andrews, M. R., Mitra, P. P., Thomson, D. J. (2005) Communicating over nonstationary nonflat wireless channels. IEEE Transactions on Signal Processing, 53 (6). pp. 2216-2227. ISSN 1053587X

Silva, J. M., Li, M. Z., Chang, K., Ge, W., Golding, M. C., Rickles, R. J., Siolas, D., Hu, G., Paddison, P. J., Schlabach, M. R., Sheth, N., Bradshaw, J., Burchard, J., Kulkarni, A., Cavet, G., Sachidanandam, R., McCombie, W. R., Cleary, M. A., Elledge, S. J., Hannon, G. J. (2005) Second-generation shRNA libraries covering the mouse and human genomes. Nat Genet, 37 (11). pp. 1281-8.

Siolas, D., Lerner, C., Burchard, J., Ge, W., Linsley, P. S., Paddison, P. J., Hannon, G. J., Cleary, M. A. (2005) Synthetic shRNAs as potent RNAi triggers. Nat Biotechnol, 23 (2). pp. 227-31. ISSN 1087-0156 (Print)

Siripurapu, V., Meth, J. L., Kobayashi, N., Hamaguchi, M. (2005) DBC2 significantly influences cell-cycle, apoptosis, cytoskeleton and membrane-trafficking pathways. J Mol Biol, 346 (1). pp. 83-9. ISSN 0022-2836 (Print)

Slonim, Noam, Atwal, Gurinder Singh, Tkacik, Gasper, Bialek, William (2005) Estimating mutual information and multi--information in large networks. arXiv.

Slonim , N., Atwal, G. S., Gasper, T., Bialek, W. (2005) Information-based clustering. Proc Nat Acad Sci (USA), 102 (51). pp. 18297-18302.

Smith, A. D., Sumazin, P., Das, D., Zhang, M. Q. (2005) Mining ChIP-chip data for transcription factor and cofactor binding sites. Bioinformatics, 21 Sup. i403-12. ISSN 1367-4803 (Print)

Smith, A. D., Sumazin, P., Zhang, M. Q. (2005) Identifying tissue-selective transcription factor binding sites in vertebrate promoters. Proc Natl Acad Sci U S A, 102 (5). pp. 1560-5. ISSN 0027-8424 (Print)

Smith, A. V., Thomas, D. J., Munro, H. M., Abecasis, G. R. (2005) Sequence features in regions of weak and strong linkage disequilibrium. Genome Res, 15 (11). pp. 1519-34. ISSN 1088-9051 (Print)

Sobczyk, A., Scheuss, V., Svoboda, K. (2005) NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. J Neurosci, 25 (26). pp. 6037-46. ISSN 1529-2401 (Electronic)

Song, J. J. (2005) STRUCTURAL AND BIOCHEMICAL STUDIES OF ARGONAUTE REVEAL THE SLICING MECHANISM OF RISC – RNAI EFFECTOR COMPLEX. PhD thesis, Cold Spring Harbor Laboratory.

Song, S., Sjöström, P. J., Reigl, M., Nelson, S., Chklovskii, D. B. (2005) Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol, 3 (3). e68. ISSN 1545-7885 (Electronic)

Sordella, R., Jiang, W., Ligeti, E., Settleman, J. (2005) Regulation of p190 RhoGAP function. Febs Journal, 272. p. 324. ISSN 1742-464X

Speck, C., Chen, Z., Li, H., Stillman, B. (2005) ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. Nat Struct Mol Biol, 12 (11). pp. 965-71. ISSN 1545-9993 (Print)

Spector, D. L. (2005) Nuclear dynamics and gene expression. Faseb Journal, 19 (4). A792-A792. ISSN 0892-6638

Spruck, C. H., Smith, A. P. L., Reed, S. E., Sangfelt, O., Keck, J., Strohmaier, H., Mendez, J., Widschwendter, M., Stillman, B., Zetterberg, A., Reed, S. I. (2005) Deregulation of cyclin E and genomic instability. In: International Symposium on Hormonal Carcinogenesis IV, Valencia, Spain.

Stegmeier, F., Hu, G., Rickles, R. J., Hannon, G. J., Elledge, S. J. (2005) A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America, 102 (37). pp. 13212-13217. ISSN 0027-8424

Stepanyants, A., Chklovskii, D. B. (2005) Neurogeometry and potential synaptic connectivity. Trends in Neurosciences, 28 (7). pp. 387-394. ISSN 0166-2236

Sternson, S. M., Shepherd, G. M. G., Friedman, J. M. (2005) Topographic mapping of VMH -> arcuate nucleus microcircuits and their reorganization by fasting. Nature Neuroscience, 8 (10). pp. 1356-1363. ISSN 1097-6256

Stewart, D., Stillman, B. (2005) Molecular Approaches to Controlling Cancer. In: Cold Spring Harbor Symposia on Quantitative Biology LXX: Molecular Approaches to Controlling Cancer, Cold Spring Harbor.

Michael Wigler (2005) Complex combinatorial chemical libraries encoded with tags. United States Patent 6936477. .

Stillman, B. (2005) Origin recognition and the chromosome cycle. FEBS Letters, 579 (4). pp. 877-84. ISSN 00145793 (ISSN)

Strick, T. R. (2005) Course 6 Single-molecule studies of DNA mechanics and DNA/Protein interactions. Les Houches, 82. pp. 161-209.

Strunze, S., Trotman, L. C., Boucke, K., Greber, U. F. (2005) Nuclear targeting of adenovirus type 2 requires CRM1-mediated nuclear export. Molecular Biology of the Cell, 16 (6). pp. 2999-3009. ISSN 10591524 (ISSN)

Sui, X. F., Kiser, T. D., Hyun, S. W., Angelini, D. J., Del Vecchio, R. L., Young, B. A., Hasday, J. D., Romer, L. H., Passaniti, A., Tonks, N. K., Goldblum, S. E. (2005) Receptor protein tyrosine phosphatase mu regulates the paracellular pathway in human lung microvascular endothelia. American Journal of Pathology, 166 (4). pp. 1247-1258. ISSN 0002-9440

Sumazin, P., Chen, G., Hata, N., Smith, A. D., Zhang, T., Zhang, M. Q. (2005) DWE: discriminating word enumerator. Bioinformatics, 21 (1). pp. 31-8. ISSN 1367-4803 (Print)

T

Tanurdžić, M., Doerge, R., Martienssen, R. (2005) Microarrays: Design, analysis, and applications in functional genomics. Archive of Oncology, 13 (3-4). pp. 124-125. ISSN 03547310 (ISSN)

Thorisson, G. A., Smith, A. V., Krishnan, L., Stein, L. D. (2005) The International HapMap Project Web site. Genome Res, 15 (11). pp. 1592-3. ISSN 1088-9051 (Print)

Toledo-Rodriguez, M., Goodman, P., Illic, M., Wu, C. Z., Markram, H. (2005) Neuropeptide and calcium-binding protein gene expression profiles predict neuronal anatomical type in the juvenile rat. Journal of Physiology-London, 567 (2). pp. 401-413. ISSN 0022-3751

Tolia, N. H., Enemark, E. J., Sim, B. K., Joshua-Tor, L. (2005) Structural basis for the EBA-175 erythrocyte invasion pathway of the malaria parasite Plasmodium falciparum. Cell, 122 (2). pp. 183-93. ISSN 0092-8674 (Print)

Tonks, N. K. (2005) Redox redux: revisiting PTPs and the control of cell signaling. Cell, 121 (5). pp. 667-70. ISSN 0092-8674 (Print)

Tost, H., Ende, G., Ruf, M., Henn, F. A., Meyer-Lindenberg, A. (2005) Functional imaging research in schizophrenia. Int Rev Neurobiol, 67. pp. 95-118. ISSN 0074-7742 (Print)0074-7742

Tost, H., Meyer-Lindenberg, A., Ruf, M., Demirakca, T., Grimm, O., Henn, F. A., Ende, G. (2005) [One decade of functional imaging in schizophrenia research. From visualisation of basic information processing steps to molecular-genetic oriented imaging]. Radiologe, 45 (2). 113-8, 120. ISSN 0033-832X (Print)0033-832X (Linking)

Tyson-Capper, A. J., Bailey, J., Krainer, A. R., Robson, S. C., Europe-Finner, G. N. (2005) The switch in alternative splicing of cyclic AMP-response element modulator protein CREM tau(2)alpha (activator) to CREM alpha (repressor) in human myometrial cells is mediated by SRp40. Journal of Biological Chemistry, 280 (41). pp. 34521-34529. ISSN 0021-9258

V

Vakoc, C. R., Letting, D. L., Gheldof, N., Sawado, T., Bender, M. A., Groudine, M., Weiss, M. J., Dekker, J., Blobel, G. A. (2005) Proximity among distant regulatory elements at the β-globin locus requires GATA-1 and FOG-1. Molecular Cell, 17 (3). pp. 453-462. ISSN 10972765 (ISSN)

Vakoc, C. R., Mandat, S. A., Olenchock, B. A., Blobel, G. A. (2005) Histone H3 lysine 9 methylation and HP1γ are associated with transcription elongation through mammalian chromatin. Molecular Cell, 19 (3). pp. 381-391. ISSN 10972765 (ISSN)

Vakoc, C. R., Mandat, S. A., Olenschock, B. A., Blobel, G. A. (2005) Histone H3 lysine 9 methylation and HP1 gamma are associated with transcription elongation through mammalian chromatin. Blood, 106 (11). 493A-493A. ISSN 0006-4971

Varmus, H., Stillman, B. (2005) Support for the Human Cancer Genome Project. Science, 310 (5754). p. 1615. ISSN 0036-8075

Vaughn, M. W., Martienssen, R. (2005) It's a small RNA world, after all. Science, 309 (5740). pp. 1525-6. ISSN 1095-9203 (Electronic)

Vaughn, M. W., Martienssen, R. A. (2005) Finding the right template: RNA Pol IV, a plant-specific RNA polymerase. Mol Cell, 17 (6). pp. 754-6. ISSN 1097-2765 (Print)

Vaughn, M. W., Tanurdzic, M., Martienssen, R. (2005) Replication, repair, and reactivation. Dev Cell, 9 (6). pp. 724-5. ISSN 1534-5807 (Print)

Vengeliene, V., Vollmayr, B., Henn, F. A., Spanagel, R. (2005) Voluntary alcohol intake in two rat lines selectively bred for learned helpless and non-helpless behavior. Psychopharmacology (Berl), 178 (2-3). pp. 125-32. ISSN 0033-3158 (Print)0033-3158

Vengeliene, V., Vollmayr, B., Henn, F. A., Spanagel, R. (2005) Voluntary alcohol intake in two rat lines selectively bred for learned helpless and non-helpless behavior. Psychopharmacology (Berl), 178 (2-3). pp. 125-32. ISSN 0033-3158 (Print)0033-3158 (Linking)

Vollbrecht, E., Springer, P. S., Goh, L., Buckler, E. S. th, Martienssen, R. (2005) Architecture of floral branch systems in maize and related grasses. Nature, 436 (7054). pp. 1119-26. ISSN 1476-4687 (Electronic)

van der Horst, E. H., Degenhardt, Y. Y., Strelow, A., Slavin, A., Chinn, L., Orf, J., Rong, M., Li, S., See, L. H., Nguyen, K. Q., Hoey, T., Wesche, H., Powers, S. (2005) Metastatic properties and genomic amplification of the tyrosine kinase gene ACK1. Proceedings of the National Academy of Sciences of the United States of America, 102 (44). pp. 15901-6. ISSN 0027-8424

W

Wang, J., Smith, P. J., Krainer, A. R., Zhang, M. Q. (2005) Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acids Res, 33 (16). pp. 5053-62. ISSN 1362-4962 (Electronic)

Warek, U., Bedell, J., Martienssen, R., Rabinowicz, P. (2005) Methylation filtration - A path to rapid gene discovery. Phytopathology, 95 (6). S109-S109. ISSN 0031-949X

Wehr, M., Zador, A. M. (2005) Synaptic mechanisms of forward suppression in rat auditory cortex. Neuron, 47 (3). pp. 437-45. ISSN 0896-6273 (Print)

Weimer, R. M., Richmond, J. E. (2005) Synaptic vesicle docking: a putative role for the Munc18/Sec1 protein family. Curr Top Dev Biol, 65. pp. 83-113. ISSN 0070-2153 (Print)

Wen, Q., Chklovskii, D. B. (2005) Segregation of the brain into gray and white matter: a design minimizing conduction delays. PLoS Comput Biol, 1 (7). e78. ISSN 1553-7358 (Electronic)

Westbrook, T. F., Martin, E. S., Schlabach, M. R., Leng, Y. M., Liang, A. C., Feng, B., Zhao, J. J., Roberts, T. M., Mandel, G., Hannon, G. J., DePinho, R. A., Chin, L., Elledge, S. J. (2005) A genetic screen for candidate tumor suppressors identifies REST. Cell, 121 (6). pp. 837-848. ISSN 0092-8674

Wing, R. A., Ammiraju, J. S. S., Luo, M. Z. X., Kim, H., Yu, Y. S., Kudrna, D., Goicoechea, J. L., Wang, W. M., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P., Jackson, S. (2005) The Oryza Map Alignment Project: The golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology, 59 (1). pp. 53-62. ISSN 0167-4412

Witkowski, Jan (2005) Foreword. In: Microbial Forensics. Academic Press, Burlington, xvii-xviii. ISBN 978-0-12-088483-4

Wu, C., Asl, M. N., Gillis, J., Skinner, F. K., Zhang, L. (2005) An in vitro model of hippocampal sharp waves: Regional initiation and intracellular correlates. Journal of Neurophysiology, 94 (1). pp. 741-753. ISSN 00223077 (ISSN)

Wu, C., Luk, W. P., Gillis, J., Skinner, F., Zhang, L. (2005) Size does matter: Generation of intrinsic network rhythms in thick mouse hippocampal slices. Journal of Neurophysiology, 93 (4). pp. 2302-2317. ISSN 00223077 (ISSN)

X

Xia, S., Miyashita, T., Fu, T. F., Lin, W. Y., Wu, C. L., Pyzocha, L., Lin, I. R., Saitoe, M., Tully, T., Chiang, A. S. (2005) NMDA receptors mediate olfactory learning and memory in Drosophila. Curr Biol, 15 (7). pp. 603-15. ISSN 0960-9822 (Print)

Xuan, Z., Zhang, M. Q. (2005) From worm to human: bioinformatics approaches to identify FOXO target genes. Mech Ageing Dev, 126 (1). pp. 209-15. ISSN 0047-6374 (Print)

Xuan, Z. Y., Zhao, F., Wang, J., Chen, G., Zhang, M. Q. (2005) Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome Biology, 6 (8). R72. ISSN 1465-6906

Y

Yang, W., Jefferson, R. A., Huttner, E., Moore, J. M., Gagliano, W. B., Grossniklaus, U. (2005) An egg apparatus-specific enhancer of Arabidopsis, identified by enhancer detection. Plant Physiology, 139 (3). pp. 1421-1432. ISSN 0032-0889

Ying, H. Q., Chang, D. L. F., Zheng, H. W., McKeon, F., Xiao, Z. X. J. (2005) DNA-binding and transactivation activities are essential for TAp63 protein degradation. Molecular and Cellular Biology, 25 (14). pp. 6154-6164. ISSN 0270-7306

Z

Zender, L., Spector, M. S., Xue, W., Flemming, P., Mu, D., Cordon-Cardo, C., Powers, S., Hannon, G. J., Lucito, R., Lowe, S. W. (2005) Representational oligonucleotide microarray (ROMA) identifies cIAP1/cIAP2 as candidate oncogenes in mouse and human hepatocarcinogenesis-validation of cIAP1 as a therapeutic target in liver cancer in a new mouse model of hepatocellular carcinoma. Hepatology, 42 (4). 244A-244A. ISSN 0270-9139

Zender, L., Xue, W., Cordon-Cardo, C., Hannon, G. J., Lucito, R., Powers, S., Flemming, P., Spector, M. S., Lowe, S. W. (2005) Generation and Analysis of Genetically Defined Liver Carcinomas Derived from Bipotential Liver Progenitors. Cold Spring Harb Symp Quant Biol, 70 (1). pp. 251-261. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

Zhang, M. Q. (2005) Using CorePromoter to find human core promoters. Curr Protoc Bioinformatics, Chapte. Unit 2.9. ISSN 1934-340X (Electronic)

Zhang, Y., Wolf-Yadlin, A., Ross, P. L., Pappin, D. J., Rush, J., Lauffenburger, D. A., White, F. M. (2005) Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Mol Cell Proteomics, 4 (9). pp. 1240-50. ISSN 1535-9476 (Print)1535-9476 (Linking)

Zhao, F., Xuan, Z., Liu, L., Zhang, M. Q. (2005) TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. Nucleic Acids Res, 33 (Databa). D103-107. ISSN 1362-4962 (Electronic)

Zhao, Z. Y., Fang, L., Chen, N. S., Johnsen, R. C., Stein, L., Baillie, D. L. (2005) Distinct regulatory elements mediate similar expression patterns in the excretory cell of Caenorhabditis elegans. Journal of Biological Chemistry, 280 (46). pp. 38787-38794. ISSN 0021-9258

Zhu, X., Lin, C. R., Prefontaine, G. G., Tollkuhn, J., Rosenfeld, M. G. (2005) Genetic control of pituitary development and hypopituitarism. Curr Opin Genet Dev, 15 (3). pp. 332-40. ISSN 0959-437X (Print)0959-437X (Linking)

Zhu, Y., Pak, D., Qin, Y., McCormack, S. G., Kim, M. J., Baumgart, J. P., Velamoor, V., Auberson, Y. P., Osten, P., Van Aelst, L., Sheng, M., Zhu, J. J. (2005) Rap2-JNK removes synaptic AMPA receptors during depotentiation. Neuron, 46 (6). pp. 905-916. ISSN 08966273 (ISSN)

Zilfou, J. T., Spector, M. S., Lowe, S. W. (2005) Slugging it out: fine tuning the p53-PUMA death connection. Cell, 123 (4). pp. 545-8. ISSN 0092-8674 (Print)

Zink, M., Rapp, S., Gebicke-Haerter, P. J., Henn, F. A., Thome, J. (2005) Antidepressants differentially affect expression of complexin I and II RNA in rat hippocampus. Psychopharmacology (Berl), 181 (3). pp. 560-5. ISSN 0033-3158 (Print)0033-3158 (Linking)

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