Items where Year is 2016

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Number of items: 233.

A

Aboukhalil, Robert (2016) Elucidating Cancer Evolution using Single-Cell Sequencing and Comparative Genomics. PhD thesis, Cold Spring Harbor Laboratory.

Adam-Blondon, A. F., Alaux, M., Pommier, C., Cantu, D., Cheng, Z. M., Cramer, G. R., Davies, C., Delrot, S., Deluc, L., Di Gaspero, G., Grimplet, J., Fennell, A., Londo, J. P., Kersey, P., Mattivi, F., Naithani, S., Neveu, P., Nikolski, M., Pezzotti, M., Reisch, B. I., Topfer, R., Vivier, M. A., Ware, D., Quesneville, H. (2016) Towards an open grapevine information system. Horticulture Research, 3. p. 16056. ISSN 2052-7276 (Linking)

Adams, R. M., Mora, T., Walczak, A. M., Kinney, J. B. (2016) Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Allemand, E., Myers, M. P., Garcia-Bernardo, J., Harel-Bellan, A., Krainer, A. R., Muchardt, C. (2016) A Broad Set of Chromatin Factors Influences Splicing. PLoS Genet, 12 (9). e1006318. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Altpeter, F., Springer, N. M., Bartley, L. E., Blechl, A., Brutnell, T. P., Citovsky, V., Conrad, L., Gelvin, S. B., Jackson, D., Kausch, A. P., Lemaux, P. G., Medford, J. I., Orozo-Cardenas, M., Tricoli, D., VanEck, J., Voytas, D. F., Walbot, V., Wang, K., Zhang, Z. J., Stewart, C. N. (2016) Advancing Crop Transformation in the Era of Genome Editing. Plant Cell, 28 (7). pp. 1510-1520. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Amin, M. R., Skiena, S., Schatz, M. C. (2016) NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads. 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Anczukow, O., Krainer, A. R. (2016) Splicing-factor alterations in cancers. RNA, 22 (9). pp. 1285-301. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Arun, G., Diermeier, S., Akerman, M., Chang, K. C., Wilkinson, J. E., Hearn, S., Kim, Y., MacLeod, A. R., Krainer, A. R., Norton, L., Brogi, E., Egeblad, M., Spector, D. L. (2016) Differentiation of mammary tumors and reduction in metastasis upon Malat1 LncRNA loss. Cancer Research, 76 (Supple). ISSN 0008-5472

Arun, G., Diermeier, S., Akerman, M., Chang, K. C., Wilkinson, J. E., Hearn, S., Kim, Y., MacLeod, A. R., Krainer, A. R., Norton, L., Brogi, E., Egeblad, M., Spector, D. L. (2016) Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss. Genes Dev, 30 (1). pp. 34-51. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Asim, M., Massie, C. E., Orafidiya, F., Pertega-Gomes, N., Warren, A. Y., Esmaeili, M., Selth, L. A., Zecchini, H. I., Luko, K., Qureshi, A., Baridi, A., Menon, S., Madhu, B., Escriu, C., Lyons, S., Vowler, S. L., Zecchini, V. R., Shaw, G., Hessenkemper, W., Russell, R., Mohammed, H., Stefanos, N., Lynch, A. G., Grigorenko, E., D'Santos, C., Taylor, C., Lamb, A., Sriranjan, R., Yang, J., Stark, R., Dehm, S. M., Rennie, P. S., Carroll, J. S., Griffiths, J. R., Tavare, S., Mills, I. G., McEwan, I. J., Baniahmad, A., Tilley, W. D., Neal, D. E. (2016) Choline Kinase Alpha as an Androgen Receptor Chaperone and Prostate Cancer Therapeutic Target. J Natl Cancer Inst, 108 (5). ISSN 1460-2105 (Electronic)0027-8874 (Linking)

Atwal, G. S., Kinney, J. B. (2016) Learning Quantitative Sequence–Function Relationships from Massively Parallel Experiments. Journal of Statistical Physics, 162 (5). pp. 1203-1243. ISSN 00224715

B

Baker, L., BeGora, M., Au Yeung, F., Feigin, M. E., Rosenberg, A. Z., Lowe, S. W., Kislinger, T., Muthuswamy, S. K. (2016) SCRIBBLE is required for pregnancy-induced alveologenesis in the adult mammary gland. J Cell Sci, 129 (12). pp. 2307-2315. ISSN 1477-9137 (Electronic)0021-9533 (Linking)

Baker, Lindsey A., Tiriac, Hervé, Clevers, Hans, Tuveson, David A. (2016) Modeling Pancreatic Cancer with Organoids. Trends in Cancer, 2 (4). pp. 176-190. ISSN 2405-8033

Baker, P. M., Jhou, T., Li, B., Matsumoto, M., Mizumori, S. J., Stephenson-Jones, M., Vicentic, A. (2016) The Lateral Habenula Circuitry: Reward Processing and Cognitive Control. J Neurosci, 36 (45). pp. 11482-11488. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Baker, R. F., Leach, K. A., Boyer, N. R., Swyers, M. J., Benitez-Alfonso, Y., Skopelitis, T., Luo, A., Sylvester, A., Jackson, D., Braun, D. M. (2016) Sucrose transporter ZmSut1 expression and localization uncover new insights into sucrose phloem loading. Plant Physiol, 172 (3). pp. 1876-1898. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Ballouz, S., Gillis, J. (2016) AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression. PLoS Comput Biol, 12 (4). e1004868. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Ballouz, S., Pavlidis, P., Gillis, J. (2016) Using predictive specificity to determine when gene set analysis is biologically meaningful. Nucleic Acids Res. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Banerjee, A., Chae, H., Albeanu, D. F. (2016) Intensity Invariant Readout of Olfactory Bulb Output is Facilitated by a Specific Inter-glomerular Circuit. Chemical Senses, 41 (7). E69-E69. ISSN 0379-864X

Barykina, N. V., Subach, O. M., Doronin, D. A., Sotskov, V. P., Roshchina, M. A., Kunitsyna, T. A., Malyshev, A. Y., Smirnov, I. V., Azieva, A. M., Sokolov, I. S., Piatkevich, K. D., Burtsev, M. S., Varizhuk, A. M., Pozmogova, G. E., Anokhin, K. V., Subach, F. V., Enikolopov, G. N. (2016) A new design for a green calcium indicator with a smaller size and a reduced number of calcium-binding sites. Sci Rep, 6. p. 34447. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Bhagwat, A. S., Roe, J. S., Mok, B. A., Vakoc, C. R. (2016) BET bromodomain inhibitors antagonize Brd4-Mediator complexes to undermine the acute myeloid leukemia cell state. Cancer Research, 76 (2). ISSN 0008-5472

Bhagwat, A. S., Roe, J. S., Mok, B. Y., Hohmann, A. F., Shi, J., Vakoc, C. R. (2016) BET Bromodomain Inhibition Releases the Mediator Complex from Select cis-Regulatory Elements. Cell Rep, 15 (3). pp. 519-30. ISSN 2211-1247 (Electronic)

Bhattacharjee, S., Nandi, S. (2016) Choices have consequences: the nexus between DNA repair pathways and genomic instability in cancer. Clin Transl Med, 5 (1). p. 45. ISSN 2001-1326

Biffi, G., Ohlund, D., Tuveson, D. (2016) Building up the tension between the epithelial and stromal compartment in pancreatic ductal adenocarcinoma. Cell Death Differ, 23 (8). pp. 1265-1266. ISSN 1476-5403 (Electronic)1350-9047 (Linking)

Boj, S. F., Hwang, C. I., Baker, L. A., Engle, D. D., Tuveson, D. A., Clevers, H. (2016) Model organoids provide new research opportunities for ductal pancreatic cancer. Mol Cell Oncol, 3 (1). e1014757. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Bombarely, A., Moser, M., Amrad, A., Bao, M., Bapaume, L., Barry, C. S., Bliek, M., Boersma, M. R., Borghi, L., Bruggmann, R., Bucher, M., D'Agostino, N., Davies, K., Druege, U., Dudareva, N., Egea-Cortines, M., Delledonne, M., Fernandez-Pozo, N., Franken, P., Grandont, L., Heslop-Harrison, J. S., Hintzsche, J., Johns, M., Koes, R., Lv, X., Lyons, E., Malla, D., Martinoia, E., Mattson, N. S., Morel, P., Mueller, L. A., Muhlemann, J., Nouri, E., Passeri, V., Pezzotti, M., Qi, Q., Reinhardt, D., Rich, M., Richert-Poggeler, K. R., Robbins, T. P., Schatz, M. C., Schranz, M. E., Schuurink, R. C., Schwarzacher, T., Spelt, K., Tang, H., Urbanus, S. L., Vandenbussche, M., Vijverberg, K., Villarino, G. H., Warner, R. M., Weiss, J., Yue, Z., Zethof, J., Quattrocchio, F., Sims, T. L., Kuhlemeier, C. (2016) Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nat Plants, 2 (6). p. 16074. ISSN 2055-0278 (Electronic)2055-0278 (Linking)

Braasch, I., Gehrke, A. R., Smith, J. J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A. M., Campbell, M. S., Barrell, D., Martin, K. J., Mulley, J. F., Ravi, V., Lee, A. P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Canestro, C., Sydes, J., Beaudry, F. E., Sun, Y., Hertel, J., Beam, M. J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J. H., Litman, G. W., Litman, R. T., Mikami, M., Ota, T., Saha, N. R., Williams, L., Stadler, P. F., Wang, H., Taylor, J. S., Fontenot, Q., Ferrara, A., Searle, S. M., Aken, B., Yandell, M., Schneider, I., Yoder, J. A., Volff, J. N., Meyer, A., Amemiya, C. T., Venkatesh, B., Holland, P. W., Guiguen, Y., Bobe, J., Shubin, N. H., Di Palma, F., Alfoldi, J., Lindblad-Toh, K., Postlethwait, J. H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet, 48 (4). pp. 427-37. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Brennan, M. F., Antonescu, C. R., Alektiar, K. M., Maki, R. G. (2016) Management of soft tissue sarcoma: Second edition. Management of Soft Tissue Sarcoma . Springer.

Breschi, A., Djebali, S., Gillis, J., Pervouchine, D. D., Dobin, A., Davis, C. A., Gingeras, T. R., Guigo, R. (2016) Gene-specific patterns of expression variation across organs and species. Genome Biol, 17 (1). p. 151. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Bruun, G. H., Doktor, T. K., Borch-Jensen, J., Masuda, A., Krainer, A. R., Ohno, K., Andresen, B. S. (2016) Global identification of hnRNP A1 binding sites for SSO-based splicing modulation. BMC Biol, 14 (1). p. 54. ISSN 1741-7007 (Electronic)1741-7007 (Linking)

C

Campbell, Michael, Oakeson, Kelly F., Yandell, Mark, Halpert, James R., Dearing, Denise (2016) The draft genome sequence and annotation of the desert woodrat Neotoma lepida. Genomics Data, 9. pp. 58-59. ISSN 2213-5960

Chang, A. E., Vaughan, A. G., Wilson, R. I. (2016) A Mechanosensory Circuit that Mixes Opponent Channels to Produce Selectivity for Complex Stimulus Features. Neuron, 92 (4). pp. 888-901. ISSN 1097-4199 (Electronic)0896-6273 (Linking)

Chavez, J. D., Eng, J. K., Schweppe, D. K., Cilia, M., Rivera, K., Zhong, X., Wu, X., Allen, T., Khurgel, M., Kumar, A., Lampropoulos, A., Larsson, M., Maity, S., Morozov, Y., Pathmasiri, W., Perez-Neut, M., Pineyro-Ruiz, C., Polina, E., Post, S., Rider, M., Tokmina-Roszyk, D., Tyson, K., Vieira Parrine Sant'Ana, D., Bruce, J. E. (2016) A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry. PLoS One, 11 (12). e0167547. ISSN 1932-6203

Chin, C. S., Peluso, P., Sedlazeck, F. J., Nattestad, M., Concepcion, G. T., Clum, A., Dunn, C., O'Malley, R., Figueroa-Balderas, R., Morales-Cruz, A., Cramer, G. R., Delledonne, M., Luo, C., Ecker, J. R., Cantu, D., Rank, D. R., Schatz, M. C. (2016) Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods, 13 (12). pp. 1050-1054. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

Chio, Iok In Christine, Jafarnejad, Seyed Mehdi, Ponz-Sarvise, Mariano, Park, Youngkyu, Rivera, Keith, Palm, Wilhelm, Wilson, John, Sangar, Vineet, Hao, Yuan, Öhlund, Daniel, Wright, Kevin, Filippini, Dea, Lee, Eun Jung, Da Silva, Brandon, Schoepfer, Christina, Wilkinson, John Erby, Buscaglia, Jonathan M, DeNicola, Gina M, Tiriac, Herve, Hammell, Molly, Crawford, Howard C, Schmidt, Edward E, Thompson, Craig B, Pappin, Darryl J, Sonenberg, Nahum, Tuveson, David A (2016) NRF2 Promotes Tumor Maintenance by Modulating mRNA Translation in Pancreatic Cancer. Cell, 166 (4). pp. 963-976. ISSN 0092-8674

Choi, K., Reinhard, C., Serra, H., Ziolkowski, P. A., Underwood, C. J., Zhao, X., Hardcastle, T. J., Yelina, N. E., Griffin, C., Jackson, M., Mezard, C., McVean, G., Copenhaver, G. P., Henderson, I. R. (2016) Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. PLoS Genet, 12 (7). e1006179. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Christov-Moore, L., Sugiyama, T., Grigaityte, K., Iacoboni, M. (2016) Increasing generosity by disrupting prefrontal cortex. Soc Neurosci, 12 (2). pp. 174-181. ISSN 1747-0927 (Electronic)1747-0919 (Linking)

Churchland, A. (2016) Q&A with Anne Churchland. Neuron, 92 (5). pp. 940-942. ISSN 0896-6273

Churchland, A. K., Abbott, L. F. (2016) Conceptual and technical advances define a key moment for theoretical neuroscience. Nat Neurosci, 19 (3). pp. 348-9. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Churchland, Anne K., Kiani, Roozbeh (2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11. pp. 74-80. ISSN 2352-1546

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., Gillis, J. (2016) Exploiting single-cell expression to characterize co-expression replicability. Genome Biol, 17 (1). p. 101. ISSN 1474-760X (Electronic)1474-7596 (Linking)

D

D'Rozario, J., Knoblich, K., Roberts, D., De Campos, J. D., Astarita, J., Mansell, A., Denton, A., Fearon, D., Withers, D., Barone, F., Turley, S., Boyd, R. L., Heng, T., Fletcher, A. L. (2016) Human and murine fibroblastic reticular cells play specialized roles in innate immune cellular crosstalk. European Journal of Immunology, 46. p. 144. ISSN 0014-2980

Defelipe, Javier, Douglas, Rodney, Hill, Sean L, Lein, Edward S, Martin, Kevan, Rockland, Kathleen S, Segev, Idan, Shepherd, Gordon M, Tamás, Gábor (2016) Comments and general discussion on “The anatomical problem posed by brain complexity and size: a potential solution”. Frontiers in Neuroanatomy, 10. ISSN 1662-5129

Delevich, K., Abi-Dargham, A., Hall, J., Sawa, A. (2016) Studying schizophrenia in the post-genomic era: perspectives from the 2016 summer Banbury Workshop at Cold Spring Harbor Laboratory. Mol Psychiatry. ISSN 1476-5578 (Electronic)1359-4184 (Linking)

Denk, Franziska, Crow, Megan, Didangelos, Athanasios, Lopes, Douglas M, McMahon, Stephen B (2016) Persistent Alterations in Microglial Enhancers in a Model of Chronic Pain. Cell Reports, 15 (8). pp. 1771-81. ISSN 2211-1247

Denton, A., Magiera, L., Watts, A., Fearon, D. (2016) Lymph node stromal cells derive from a distinct embryonic FAP plus progenitor. European Journal of Immunology, 46 (Supple). p. 507. ISSN 0014-2980

Desai, A., Connelly, J. J., March, M., Hou, C., Chiavacci, R. , Kim, C., Lyon, G., Hadley, D., Hakonarson, H. (2016) Systematic data-querying of large pediatric biorepository identifies novel Ehlers-Danlos Syndrome variant. BMC Musculoskelet Disord, 17 (1). p. 80.

Diaz-Balzac, C. A., Rahman, M., Lazaro-Pena, M. I., Martin Hernandez, L. A., Salzberg, Y., Aguirre-Chen, C., Kaprielian, Z., Bulow, H. E. (2016) Muscle- and Skin-Derived Cues Jointly Orchestrate Patterning of Somatosensory Dendrites. Curr Biol, 26 (17). pp. 2379-2387. ISSN 1879-0445 (Electronic)0960-9822 (Linking)

Diermeier, S. D., Chang, K. C., Freier, S. M., Rigo, F., Bennett, C. F., Spector, D. L. (2016) Long noncoding RNAs as targets of mammary tumor cell proliferation and migration. Cancer Research, 76. ISSN 0008-5472

Diermeier, Sarah D, Chang, Kung-Chi, Freier, Susan M, Song, Junyan, El Demerdash, Osama, Krasnitz, Alexander, Rigo, Frank, Bennett, C.  Frank, Spector, David L (2016) Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration. Cell Reports, 17 (1). pp. 261-274. ISSN 2211-1247

Do Monte, F. H., Quirk, G. J., Li, B., Penzo, M. A. (2016) Retrieving fear memories, as time goes by. Mol Psychiatry, 21 (8). pp. 1027-1036. ISSN 1476-5578 (Electronic)1359-4184 (Linking)

Dobin, A., Gingeras, T. R. (2016) Optimizing RNA-Seq Mapping with STAR. Methods Mol Biol, 1415. pp. 245-262. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Dodgson, S. E., Santaguida, S., Kim, S., Sheltzer, J., Amon, A. (2016) The pleiotropic deubiquitinase Ubp3 confers aneuploidy tolerance. Genes Dev. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Dominguez-Brauer, C., Hao, Z., Elia, A. J., Fortin, J. M., Nechanitzky, R., Brauer, P. M., Sheng, Y., Mana, M. D., Chio, II, Haight, J., Pollett, A., Cairns, R., Tworzyanski, L., Inoue, S., Reardon, C., Marques, A., Silvester, J., Cox, M. A., Wakeham, A., Yilmaz, O. H., Sabatini, D. M., van Es, J. H., Clevers, H., Sato, T., Mak, T. W. (2016) Mule Regulates the Intestinal Stem Cell Niche via the Wnt Pathway and Targets EphB3 for Proteasomal and Lysosomal Degradation. Cell Stem Cell, 19 (2). pp. 205-16. ISSN 1875-9777 (Electronic)

Drew, L. J., Kheirbek, M. A., Luna, V. M., Denny, C. A., Cloidt, M. A., Wu, M. V., Jain, S., Scharfman, H. E., Hen, R. (2016) Activation of local inhibitory circuits in the dentate gyrus by adult-born neurons. Hippocampus, 26 (6). pp. 763-78. ISSN 1098-1063 (Electronic)1050-9631 (Linking)

Dukler, N., Gulko, B., Huang, Y. F., Siepel, A. (2016) Is a super-enhancer greater than the sum of its parts? Nat Genet, 49 (1). pp. 2-3. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Dzien, P., Tee, S. S., Kettunen, M. I., Lyons, S. K., Larkin, T. J., Timm, K. N., Hu, D. E., Wright, A., Rodrigues, T. B., Serrao, E. M., Marco-Rius, I., Mannion, E., D'Santos, P., Kennedy, B. W., Brindle, K. M. (2016) (13) C magnetic resonance spectroscopy measurements with hyperpolarized [1-(13) C] pyruvate can be used to detect the expression of transgenic pyruvate decarboxylase activity in vivo. Magn Reson Med, 76 (2). pp. 391-401. ISSN 1522-2594 (Electronic)0740-3194 (Linking)

E

Ebbesen, S. H., Scaltriti, M., Bialucha, C. U., Morse, N., Kastenhuber, E. R., Wen, H. Y., Dow, L. E., Baselga, J., Lowe, S. W. (2016) Pten loss promotes MAPK pathway dependency in HER2/neu breast carcinomas. Proc Natl Acad Sci U S A, 113 (11). pp. 3030-3035. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Elsayed, G. F., Lara, A. H., Kaufman, M. T., Churchland, M. M., Cunningham, J. P. (2016) Reorganization between preparatory and movement population responses in motor cortex. Nat Commun, 7. p. 13239. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Engel, T. A., Steinmetz, N. A., Gieselmann, M. A., Thiele, A., Moore, T., Boahen, K. (2016) Selective modulation of cortical state during spatial attention. Science, 354 (6316). pp. 1140-1144. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Espana-Agusti, J., Zou, X. G., Wong, K., Fu, B. Y., Yang, F. T., Tuveson, D. A., Adams, D. J., Matakidou, A. (2016) Generation and Characterisation of a Pax8-CreER(T2) Transgenic Line and a Slc22a6-CreER(T2) Knock-In Line for Inducible and Specific Genetic Manipulation of Renal Tubular Epithelial Cells. Plos One, 11 (2). ISSN 1932-6203

F

Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., Matthews, L., May, B., Milacic, M., Rothfels, K., Shamovsky, V., Webber, M., Weiser, J., Williams, M., Wu, G., Stein, L., Hermjakob, H., D'Eustachio, P. (2016) The Reactome pathway Knowledgebase. Nucleic Acids Res, 44 (D1). D481-487. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Fagegaltier, D., Falciatori, I., Czech, B., Castel, S., Perrimon, N., Simcox, A., Hannon, G. J. (2016) Oncogenic transformation of Drosophila somatic cells induces a functional piRNA pathway. Genes Dev, 30 (14). pp. 1623-35. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Fan, G., Zhang, S., Gao, Y., Greer, P. A., Tonks, N. K. (2016) HGF-independent regulation of MET and GAB1 by nonreceptor tyrosine kinase FER potentiates metastasis in ovarian cancer. Genes Dev, 30 (13). pp. 1542-57. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Fang, H., Bergmann, E. A., Arora, K., Vacic, V., Zody, M. C., Iossifov, I., O'Rawe, J. A., Wu, Y., Jimenez Barron, L. T., Rosenbaum, J., Ronemus, M., Lee, Y. H., Wang, Z., Dikoglu, E., Jobanputra, V., Lyon, G. J., Wigler, M., Schatz, M. C., Narzisi, G. (2016) Indel variant analysis of short-read sequencing data with Scalpel. Nat Protoc, 11 (12). pp. 2529-2548. ISSN 1750-2799 (Electronic)1750-2799 (Linking)

Fearon, D. (2016) Combination immunotherapy for cancer. J Exp Med, 213 (7). p. 1115. ISSN 1540-9538 (Electronic)0022-1007 (Linking)

Feike, D., Seung, D., Graf, A., Bischof, S., Ellick, T., Coiro, M., Soyk, S., Eicke, S., Mettler-Altmann, T., Lu, K. J., Trick, M., Zeeman, S. C., Smith, A. M. (2016) The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. Plant Cell, 28 (6). pp. 1472-89. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Felling, Ryan J., Covey, Matthew V., Wolujewicz, Paul, Batish, Mona, Levison, Steven W. (2016) Astrocyte-produced leukemia inhibitory factor expands the neural stem/progenitor pool following perinatal hypoxia–ischemia. Journal of Neuroscience Research. ISSN 1097-4547

Ferrante, D. D., Wei, Y., Koulakov, A. A. (2016) Mathematical Model of Evolution of Brain Parcellation. Front Neural Circuits, 10. p. 43. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Flint, T. R., Janowitz, T., Connell, C. M., Roberts, E. W., Denton, A. E., Coll, A. P., Jodrell, D. I., Fearon, D. T. (2016) Tumor-Induced IL-6 Reprograms Host Metabolism to Suppress Anti-tumor Immunity. Cell Metab, 24 (5). pp. 672-684. ISSN 1932-7420 (Electronic)1550-4131 (Linking)

Fransz, P., Linc, G., Lee, C. R., Aflitos, S. A., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., de Jong, H., Schranz, M. E. (2016) Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J, 88 (2). pp. 159-178. ISSN 1365-313X (Electronic)0960-7412 (Linking)

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Tello-Ruiz, M. K., Stein, J., Wei, S., Youens-Clark, K., Jaiswal, P., Ware, D. (2016) Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways. Methods Mol Biol, 1374. pp. 141-63. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Teng, M., Love, M. I., Davis, C. A., Djebali, S., Dobin, A., Graveley, B. R., Li, S., Mason, C. E., Olson, S., Pervouchine, D., Sloan, C. A., Wei, X., Zhan, L., Irizarry, R. A. (2016) A benchmark for RNA-seq quantification pipelines. Genome Biol, 17 (1). p. 74. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Tramantano, M., Sun, L., Au, C., Labuz, D., Liu, Z., Chou, M., Shen, C., Luk, E. (2016) Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Turner, Tychele N, Hormozdiari, Fereydoun, Duyzend, Michael H, McClymont, Sarah A, Hook, Paul W, Iossifov, Ivan, Raja, Archana, Baker, Carl, Hoekzema, Kendra, Stessman, Holly A, Zody, Michael C, Nelson, Bradley J, Huddleston, John, Sandstrom, Richard, Smith, Joshua D, Hanna, David, Swanson, James M, Faustman, Elaine M, Bamshad, Michael J, Stamatoyannopoulos, John, Nickerson, Deborah A, McCallion, Andrew S, Darnell, Robert, Eichler, Evan E (2016) Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA. The American Journal of Human Genetics, 98 (1). pp. 58-74. ISSN 0002-9297

Tuveson, D. A. (2016) Detecting and killing pancreatic cancer. Human Gene Therapy, 27 (11). A12-A12. ISSN 1043-0342

U

Urano, D., Maruta, N., Trusov, Y., Stoian, R., Wu, Q., Liang, Y., Jaiswal, D. K., Thung, L., Jackson, D., Botella, J. R., Jones, A. M. (2016) Saltational evolution of the heterotrimeric G protein signaling mechanisms in the plant kingdom. Sci Signal, 9 (446). ra93. ISSN 1937-9145 (Electronic)1945-0877 (Linking)

Urano, D., Miura, K., Wu, Q., Iwasaki, Y., Jackson, D., Jones, A. M. (2016) Plant Morphology of Heterotrimeric G protein Mutants. Plant Cell Physiol, 57 (3). pp. 437-445. ISSN 1471-9053 (Electronic)0032-0781 (Linking)

V

Vareslija, D., McBryan, J., Fagan, A., Redmond, A. M., Hao, Y., Sims, A. H., Turnbull, A. K., Dixon, J. M., P, O. Gaora, Hudson, L., Purcell, S., Hill, A. D., Young, L. (2016) Adaptation to AI therapy in breast cancer can induce dynamic alterations in ER activity resulting in estrogen independent metastatic tumours. Clin Cancer Res, 22 (11). pp. 2765-77. ISSN 1078-0432 (Electronic)1078-0432 (Linking)

Vembar, S. S., Seetin, M., Lambert, C., Nattestad, M., Schatz, M. C., Baybayan, P., Scherf, A., Smith, M. L. (2016) Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing. DNA Res, 23 (4). pp. 339-351. ISSN 1756-1663 (Electronic)1340-2838 (Linking)

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Vij, S., Kuhl, H., Kuznetsova, I. S., Komissarov, A., Yurchenko, A. A., Van Heusden, P., Singh, S., Thevasagayam, N. M., Prakki, S. R., Purushothaman, K., Saju, J. M., Jiang, J., Mbandi, S. K., Jonas, M., Hin Yan Tong, A., Mwangi, S., Lau, D., Ngoh, S. Y., Liew, W. C., Shen, X., Hon, L. S., Drake, J. P., Boitano, M., Hall, R., Chin, C. S., Lachumanan, R., Korlach, J., Trifonov, V., Kabilov, M., Tupikin, A., Green, D., Moxon, S., Garvin, T., Sedlazeck, F. J., Vurture, G. W., Gopalapillai, G., Kumar Katneni, V., Noble, T. H., Scaria, V., Sivasubbu, S., Jerry, D. R., O'Brien, S. J., Schatz, M. C., Dalmay, T., Turner, S. W., Lok, S., Christoffels, A., Orban, L. (2016) Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PLoS Genet, 12 (4). e1005954. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Vogt, K., Aso, Y., Hige, T., Knapek, S., Ichinose, T., Friedrich, A. B., Turner, G. C., Rubin, G. M., Tanimoto, H. (2016) Direct neural pathways convey distinct visual information to Drosophila mushroom bodies. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

W

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Wang, B., Tseng, E., Regulski, M., Clark, T. A., Hon, T., Jiao, Y., Lu, Z., Olson, A., Stein, J. C., Ware, D. (2016) Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing. Nat Commun, 7. p. 11708. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Wang, L., Van Buren, P., Ware, D. (2016) Architecting a distributed bioinformatics platform with iRODS and iPlant agave API. 2015 International Conference on Computational Science and Computational Intelligence (CSCI). pp. 420-423.

Wang, Z., Andrews, P., Kendall, J., Ma, B., Hakker, I., Rodgers, L., Ronemus, M., Wigler, M., Levy, D. (2016) SMASH, a fragmentation and sequencing method for genomic copy number analysis. Genome Res, 26 (6). pp. 844-51. ISSN 1549-5469 (Electronic)1088-9051 (Linking)

Wei, Y., Gokhale, R. H., Sonnenschein, A., Montgomery, K. M., Ingersoll, A., Arnosti, D. N. (2016) Complex cis-regulatory landscape of the insulin receptor gene underlies the broad expression of a central signaling regulator. Development, 143 (19). pp. 3591-3603. ISSN 0950-1991

Witkowski, Jan (2016) Darwin’s Favorite Journal. Cell, 164 (4). pp. 591-592. ISSN 0092-8674

X

Xu, C., Park, S. J., Van Eck, J., Lippman, Z. B. (2016) Control of inflorescence architecture in tomato by BTB/POZ transcriptional regulators. Genes Dev, 30 (18). pp. 2048-2061. ISSN 0890-9369 (Print)0890-9369 (Linking)

Y

Yang, C. H., Shih, M. F., Chang, C. C., Chiang, M. H., Shih, H. W., Tsai, Y. L., Chiang, A. S., Fu, T. F., Wu, C. L. (2016) Additive Expression of Consolidated Memory through Drosophila Mushroom Body Subsets. PLoS Genet, 12 (5). e1006061. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Yu, A. T., Bergmann, J. H., Berasain, C., Rigo, F., Spector, D. L. (2016) Probing the Role of a Highly Expressed Long Non-Coding RNA in Hepatocellular Carcinoma. Molecular Biology of the Cell, 27. Abstract P343. ISSN 1059-15241939-4586

Yu, K., Garcia da Silva, P., Albeanu, D. F., Li, B. (2016) Central Amygdala Somatostatin Neurons Gate Passive and Active Defensive Behaviors. J Neurosci, 36 (24). pp. 6488-96. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Z

Zai, G., Alberry, B., Arloth, J., Banlaki, Z., Bares, C., Boot, E., Camilo, C., Chadha, K., Chen, Q., Cole, C. B., Cost, K. T., Crow, M., Ekpor, I., Fischer, S. B., Flatau, L., Gagliano, S., Kirli, U., Kukshal, P., Labrie, V., Lang, M., Lett, T. A., Maffioletti, E., Maier, R., Mihaljevic, M., Mittal, K., Monson, E. T., O'Brien, N. L., Ostergaard, S. D., Ovenden, E., Patel, S., Peterson, R. E., Pouget, J. G., Rovaris, D. L., Seaman, L., Shankarappa, B., Tsetsos, F., Vereczkei, A., Wang, C., Xulu, K., Yuen, R. K., Zhao, J., Zai, C. C., Kennedy, J. L. (2016) Rapporteur summaries of plenary, symposia, and oral sessions from the XXIIIrd World Congress of Psychiatric Genetics Meeting in Toronto, Canada, 16-20 October 2015. Psychiatr Genet. ISSN 1473-5873 (Electronic)0955-8829 (Linking)

Zalabák, David, Johnová, Patricie, Plíhal, Ondřej, Šenková, Karolina, Šamajová, Olga, Jiskrová, Eva, Novák, Ondřej, Jackson, David, Mohanty, Amitabh, Galuszka, Petr (2016) Maize cytokinin dehydrogenase isozymes are predominantly localized to the vacuole. Plant Physiology and Biochemistry, 104. pp. 114-124. ISSN 0981-9428

Zhang, Qiang, Zeng, Lei, Shen, Chen, Ju, Ying, Konuma, Tsuyoshi, Zhao, Chengcheng, Vakoc, Christopher R, Zhou, Ming-Ming (2016) Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4. Structure. ISSN 0969-2126

Zhang, T., Romanel, A., Kluk, M. J., Eng, K., Iossifov, I., Sboner, A., Lipkin, S., Pritchard, C., Beltran, H., Rubin, M., Demichelis, F., Elemento, O. (2016) Germline Variants and Secondary Findings in a Cancer Precision Medicine Cohort. Laboratory Investigation, 96. 461A-461A. ISSN 0023-6837

Zhu, J., Peng, T., Chang, Y., Layton, E., Sun, S. J., Phasouk, K., Johnston, C., Halford, W. P., Wald, A., Corey, L. (2016) Tissue resident memory CD8 T cells augment innate immunity for tissue-wide antiviral protection. Journal of Immunology, 196 (Supple). 148.7. ISSN 0022-17671550-6606

Ö

Öhlund, Daniel, Handly-Santana, Abram, Elyada, Ela, Biffi, Giulia, Tuveson, David A. (2016) Pancreatic stellate cell heterogeneity in cancer. Pancreatology, 16 (3, Sup). S15. ISSN 1424-3903

This list was generated on Sat Dec 16 20:10:06 2017 EST.
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