Items where Year is 2016

Neel, B.G., Tonks, N.K., eds. (2016) Protein Tyrosine Phosphatases in Cancer. Springer New York. ISBN 9781493936496

Aboukhalil, Robert (March 2016) Elucidating Cancer Evolution using Single-Cell Sequencing and Comparative Genomics. PhD thesis, Cold Spring Harbor Laboratory.

Adam-Blondon, A. F., Alaux, M., Pommier, C., Cantu, D., Cheng, Z. M., Cramer, G. R., Davies, C., Delrot, S., Deluc, L., Di Gaspero, G., Grimplet, J., Fennell, A., Londo, J. P., Kersey, P., Mattivi, F., Naithani, S., Neveu, P., Nikolski, M., Pezzotti, M., Reisch, B. I., Topfer, R., Vivier, M. A., Ware, D., Quesneville, H. (November 2016) Towards an open grapevine information system. Horticulture Research, 3. p. 16056. ISSN 2052-7276 (Linking)

Adams, R. M., Mora, T., Walczak, A. M., Kinney, J. B. (December 2016) Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking) (Public Dataset)

Allemand, E., Myers, M. P., Garcia-Bernardo, J., Harel-Bellan, A., Krainer, A. R., Muchardt, C. (September 2016) A Broad Set of Chromatin Factors Influences Splicing. PLoS Genet, 12 (9). e1006318. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Altpeter, F., Springer, N. M., Bartley, L. E., Blechl, A., Brutnell, T. P., Citovsky, V., Conrad, L., Gelvin, S. B., Jackson, D., Kausch, A. P., Lemaux, P. G., Medford, J. I., Orozo-Cardenas, M., Tricoli, D., VanEck, J., Voytas, D. F., Walbot, V., Wang, K., Zhang, Z. J., Stewart, C. N. (June 2016) Advancing Crop Transformation in the Era of Genome Editing. Plant Cell, 28 (7). pp. 1510-1520. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Amin, M. R., Skiena, S., Schatz, M. C. (October 2016) NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads. 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Anczukow, O., Krainer, A. R. (September 2016) Splicing-factor alterations in cancers. RNA, 22 (9). pp. 1285-301. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Andrews, Peter A., Iossifov, Ivan, Kendall, Jude, Marks, Steven, Muthuswamy, Lakshmi, Wang, Zihua, Levy, Dan, Wigler, Michael (September 2016) MUMdex: MUM-based structural variation detection. bioRxiv. 078261.

Arun, G., Diermeier, S., Akerman, M., Chang, K. C., Wilkinson, J. E., Hearn, S., Kim, Y., MacLeod, A. R., Krainer, A. R., Norton, L., Brogi, E., Egeblad, M., Spector, D. L. (March 2016) Differentiation of mammary tumors and reduction in metastasis upon Malat1 LncRNA loss. Cancer Research, 76 (Supple). ISSN 0008-5472

Arun, G., Diermeier, S., Akerman, M., Chang, K. C., Wilkinson, J. E., Hearn, S., Kim, Y., MacLeod, A. R., Krainer, A. R., Norton, L., Brogi, E., Egeblad, M., Spector, D. L. (January 2016) Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss. Genes Dev, 30 (1). pp. 34-51. ISSN 1549-5477 (Electronic)0890-9369 (Linking) (Public Dataset)

Asim, M., Massie, C. E., Orafidiya, F., Pertega-Gomes, N., Warren, A. Y., Esmaeili, M., Selth, L. A., Zecchini, H. I., Luko, K., Qureshi, A., Baridi, A., Menon, S., Madhu, B., Escriu, C., Lyons, S., Vowler, S. L., Zecchini, V. R., Shaw, G., Hessenkemper, W., Russell, R., Mohammed, H., Stefanos, N., Lynch, A. G., Grigorenko, E., D'Santos, C., Taylor, C., Lamb, A., Sriranjan, R., Yang, J., Stark, R., Dehm, S. M., Rennie, P. S., Carroll, J. S., Griffiths, J. R., Tavare, S., Mills, I. G., McEwan, I. J., Baniahmad, A., Tilley, W. D., Neal, D. E. (May 2016) Choline Kinase Alpha as an Androgen Receptor Chaperone and Prostate Cancer Therapeutic Target. J Natl Cancer Inst, 108 (5). ISSN 1460-2105 (Electronic)0027-8874 (Linking)

Atwal, G. S., Kinney, J. B. (March 2016) Learning Quantitative Sequence–Function Relationships from Massively Parallel Experiments. Journal of Statistical Physics, 162 (5). pp. 1203-1243. ISSN 00224715

Baker, L., BeGora, M., Au Yeung, F., Feigin, M. E., Rosenberg, A. Z., Lowe, S. W., Kislinger, T., Muthuswamy, S. K. (June 2016) SCRIBBLE is required for pregnancy-induced alveologenesis in the adult mammary gland. J Cell Sci, 129 (12). pp. 2307-2315. ISSN 1477-9137 (Electronic)0021-9533 (Linking)

Baker, Lindsey A., Tiriac, Hervé, Clevers, Hans, Tuveson, David A. (April 2016) Modeling Pancreatic Cancer with Organoids. Trends in Cancer, 2 (4). pp. 176-190. ISSN 2405-8033

Baker, P. M., Jhou, T., Li, B., Matsumoto, M., Mizumori, S. J., Stephenson-Jones, M., Vicentic, A. (November 2016) The Lateral Habenula Circuitry: Reward Processing and Cognitive Control. J Neurosci, 36 (45). pp. 11482-11488. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Baker, R. F., Leach, K. A., Boyer, N. R., Swyers, M. J., Benitez-Alfonso, Y., Skopelitis, T., Luo, A., Sylvester, A., Jackson, D., Braun, D. M. (November 2016) Sucrose transporter ZmSut1 expression and localization uncover new insights into sucrose phloem loading. Plant Physiol, 172 (3). pp. 1876-1898. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Ballouz, S., Gillis, J. (April 2016) AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression. PLoS Comput Biol, 12 (4). e1004868. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Ballouz, S., Pavlidis, P., Gillis, J. (October 2016) Using predictive specificity to determine when gene set analysis is biologically meaningful. Nucleic Acids Res. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Ballouz, Sara, Weber, Melanie, Pavlidis, Paul, Gillis, Jesse (May 2016) EGAD: Ultra-fast functional analysis of gene networks. BioRxiv. (Unpublished)

Banerjee, A., Chae, H., Albeanu, D. F. (September 2016) Intensity Invariant Readout of Olfactory Bulb Output is Facilitated by a Specific Inter-glomerular Circuit. Chemical Senses, 41 (7). E69-E69. ISSN 0379-864X

Barrow, A. S., Moses, J. E. (July 2016) Synthesis of Sulfonyl Azides via Lewis Base Activation of Sulfonyl Fluorides and Trimethylsilyl Azide. Synlett, 27 (12). pp. 1840-1843. ISSN 0936-5214

Barykina, N. V., Subach, O. M., Doronin, D. A., Sotskov, V. P., Roshchina, M. A., Kunitsyna, T. A., Malyshev, A. Y., Smirnov, I. V., Azieva, A. M., Sokolov, I. S., Piatkevich, K. D., Burtsev, M. S., Varizhuk, A. M., Pozmogova, G. E., Anokhin, K. V., Subach, F. V., Enikolopov, G. N. (2016) A new design for a green calcium indicator with a smaller size and a reduced number of calcium-binding sites. Sci Rep, 6. p. 34447. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Baslan, T., Kendall, J., Rodgers, L., Cox, H., Riggs, M., Stepansky, A., Troge, J., Ravi, K., Esposito, D., Lakshmi, B., Wigler, M., Navin, N., Hicks, J. (March 2016) Corrigendum: Genome-wide copy number analysis of single cells. Nat Protoc, 11 (3). p. 616. ISSN 1750-2799

Beyaz, S., Mana, M. D., Roper, J., Kedrin, D., Saadatpour, A., Hong, S. J., Bauer-Rowe, K. E., Xifaras, M. E., Akkad, A., Arias, E., Pinello, L., Katz, Y., Shinagare, S., Abu-Remaileh, M., Mihaylova, M. M., Lamming, D. W., Dogum, R., Guo, G., Bell, G. W., Selig, M., Nielsen, G. P., Gupta, N., Ferrone, C. R., Deshpande, V., Yuan, G. C., Orkin, S. H., Sabatini, D. M., Yilmaz, O. H. (March 2016) High-fat diet enhances stemness and tumorigenicity of intestinal progenitors. Nature, 531 (7592). pp. 53-8. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Beyaz, S., Yilmaz, O. H. (December 2016) Molecular Pathways: Dietary Regulation of Stemness and Tumor Initiation by the PPAR-delta Pathway. Clin Cancer Res, 22 (23). pp. 5636-5641. ISSN 1078-0432 (Print)1078-0432 (Linking)

Beyaz, Semir (May 2016) UTX controls lineage-specific epigenetic program and development of iNKT cells. In: Annual Meeting of the American-Association-of-Immunologists (AAI).

Bhagwat, A. S., Roe, J. S., Mok, B. A., Vakoc, C. R. (January 2016) BET bromodomain inhibitors antagonize Brd4-Mediator complexes to undermine the acute myeloid leukemia cell state. Cancer Research, 76 (2). ISSN 0008-5472

Bhagwat, A. S., Roe, J. S., Mok, B. Y., Hohmann, A. F., Shi, J., Vakoc, C. R. (April 2016) BET Bromodomain Inhibition Releases the Mediator Complex from Select cis-Regulatory Elements. Cell Rep, 15 (3). pp. 519-30. ISSN 2211-1247 (Electronic)

Bhat, S. V., Robinson, D., Moses, J. E., Sharma, P. (March 2016) Synthesis of Oxadiazol-5-imines via the Cyclizative Capture of in Situ Generated Cyanamide Ions and Nitrile Oxides. Org Lett, 18 (5). pp. 1100-3. ISSN 1523-7052

Bhattacharjee, S., Nandi, S. (December 2016) Choices have consequences: the nexus between DNA repair pathways and genomic instability in cancer. Clin Transl Med, 5 (1). p. 45. ISSN 2001-1326

Biffi, G., Ohlund, D., Tuveson, D. (August 2016) Building up the tension between the epithelial and stromal compartment in pancreatic ductal adenocarcinoma. Cell Death Differ, 23 (8). pp. 1265-1266. ISSN 1476-5403 (Electronic)1350-9047 (Linking)

Boj, S. F., Hwang, C. I., Baker, L. A., Engle, D. D., Tuveson, D. A., Clevers, H. (January 2016) Model organoids provide new research opportunities for ductal pancreatic cancer. Mol Cell Oncol, 3 (1). e1014757. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Bombarely, A., Moser, M., Amrad, A., Bao, M., Bapaume, L., Barry, C. S., Bliek, M., Boersma, M. R., Borghi, L., Bruggmann, R., Bucher, M., D'Agostino, N., Davies, K., Druege, U., Dudareva, N., Egea-Cortines, M., Delledonne, M., Fernandez-Pozo, N., Franken, P., Grandont, L., Heslop-Harrison, J. S., Hintzsche, J., Johns, M., Koes, R., Lv, X., Lyons, E., Malla, D., Martinoia, E., Mattson, N. S., Morel, P., Mueller, L. A., Muhlemann, J., Nouri, E., Passeri, V., Pezzotti, M., Qi, Q., Reinhardt, D., Rich, M., Richert-Poggeler, K. R., Robbins, T. P., Schatz, M. C., Schranz, M. E., Schuurink, R. C., Schwarzacher, T., Spelt, K., Tang, H., Urbanus, S. L., Vandenbussche, M., Vijverberg, K., Villarino, G. H., Warner, R. M., Weiss, J., Yue, Z., Zethof, J., Quattrocchio, F., Sims, T. L., Kuhlemeier, C. (May 2016) Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nat Plants, 2 (6). p. 16074. ISSN 2055-0278 (Electronic)2055-0278 (Linking)

Borniger, J. C., Cisse, Y. M., Cantemir-Stone, C. Z., Bolon, B., Nelson, R. J., Marsh, C. B. (May 2016) Behavioral abnormalities in mice lacking mesenchyme-specific Pten. Behav Brain Res, 304. pp. 80-5. ISSN 1872-7549

Borniger, J. C., Cisse, Y. M., Gaudier-Diaz, M. M., Walker Ii, W. H. (2016) Commentary: Anxiety- and Depression-like States Lead to Pronounced Olfactory Deficits and Impaired Adult Neurogenesis in Mice. Front Behav Neurosci, 10. p. 130. ISSN 1662-5153

Borniger, J. C., Hesp, Z. C. (November 2016) Enhancing Remyelination through a Novel Opioid-Receptor Pathway. J Neurosci, 36 (47). pp. 11831-11833. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Borniger, J. C., Teplitsky, S., Gnyawali, S., Nelson, R. J., Rink, C. (July 2016) Photoperiodic Regulation of Cerebral Blood Flow in White-Footed Mice (Peromyscus leucopus). eNeuro, 3 (4). ISSN 2373-2822 (Electronic)2373-2822 (Linking)

Borniger, JC, Cissé, YM, Cantemir-Stone, CZ, Bolon, B, Nelson, RJ, Marsh, CB (May 2016) Corrigendum to "Behavioral abnormalities in mice lacking mesenchyme-specific Pten". Behavioural Brain Research, 305. p. 278. ISSN 0166-4328

Boudreau, Colton, Wee, Tse-Luen Erika, Duh, Yan-Rung Silvia, Couto, Melissa P, Ardakani, Kimya H, Brown, Claire M (August 2016) Excitation Light Dose Engineering to Reduce Photo-bleaching and Photo-toxicity. Scientific Reports, 6 (1). p. 30892. ISSN 2045-2322

Braasch, I., Gehrke, A. R., Smith, J. J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A. M., Campbell, M. S., Barrell, D., Martin, K. J., Mulley, J. F., Ravi, V., Lee, A. P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Canestro, C., Sydes, J., Beaudry, F. E., Sun, Y., Hertel, J., Beam, M. J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J. H., Litman, G. W., Litman, R. T., Mikami, M., Ota, T., Saha, N. R., Williams, L., Stadler, P. F., Wang, H., Taylor, J. S., Fontenot, Q., Ferrara, A., Searle, S. M., Aken, B., Yandell, M., Schneider, I., Yoder, J. A., Volff, J. N., Meyer, A., Amemiya, C. T., Venkatesh, B., Holland, P. W., Guiguen, Y., Bobe, J., Shubin, N. H., Di Palma, F., Alfoldi, J., Lindblad-Toh, K., Postlethwait, J. H. (April 2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet, 48 (4). pp. 427-37. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Brennan, M. F., Antonescu, C. R., Alektiar, K. M., Maki, R. G. (January 2016) Management of soft tissue sarcoma: Second edition. Management of Soft Tissue Sarcoma . Springer.

Breschi, A., Djebali, S., Gillis, J., Pervouchine, D. D., Dobin, A., Davis, C. A., Gingeras, T. R., Guigo, R. (2016) Gene-specific patterns of expression variation across organs and species. Genome Biol, 17 (1). p. 151. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Bruun, G. H., Doktor, T. K., Borch-Jensen, J., Masuda, A., Krainer, A. R., Ohno, K., Andresen, B. S. (July 2016) Global identification of hnRNP A1 binding sites for SSO-based splicing modulation. BMC Biol, 14 (1). p. 54. ISSN 1741-7007 (Electronic)1741-7007 (Linking)

Campbell, Michael, Oakeson, Kelly F., Yandell, Mark, Halpert, James R., Dearing, Denise (June 2016) The draft genome sequence and annotation of the desert woodrat Neotoma lepida. Genomics Data, 9. pp. 58-59. ISSN 2213-5960

Campos, J, Nayar, S, Croft, AP, Denton, AE, Fearon, DT, Buckley, CD, Barone, F (June 2016) DEPLETION OF LYMPHOID-LIKE STROMAL CELLS IMPAIRS TERTIARY LYMPHOID ORGAN FORMATION IN AN ANIMAL MODEL OF SJOGREN'S SYNDROME. In: Annual European Congress of Rheumatology.

Chang, A. E., Vaughan, A. G., Wilson, R. I. (November 2016) A Mechanosensory Circuit that Mixes Opponent Channels to Produce Selectivity for Complex Stimulus Features. Neuron, 92 (4). pp. 888-901. ISSN 1097-4199 (Electronic)0896-6273 (Linking)

Chavez, J. D., Eng, J. K., Schweppe, D. K., Cilia, M., Rivera, K., Zhong, X., Wu, X., Allen, T., Khurgel, M., Kumar, A., Lampropoulos, A., Larsson, M., Maity, S., Morozov, Y., Pathmasiri, W., Perez-Neut, M., Pineyro-Ruiz, C., Polina, E., Post, S., Rider, M., Tokmina-Roszyk, D., Tyson, K., Vieira Parrine Sant'Ana, D., Bruce, J. E. (December 2016) A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry. PLoS One, 11 (12). e0167547. ISSN 1932-6203

Chen, Jerry L, Voigt, Fabian F, Javadzadeh, Mitra, Krueppel, Roland, Helmchen, Fritjof (May 2016) Long-range population dynamics of anatomically defined neocortical networks. eLife, 5. ISSN 2050-084X

Chin, C. S., Peluso, P., Sedlazeck, F. J., Nattestad, M., Concepcion, G. T., Clum, A., Dunn, C., O'Malley, R., Figueroa-Balderas, R., Morales-Cruz, A., Cramer, G. R., Delledonne, M., Luo, C., Ecker, J. R., Cantu, D., Rank, D. R., Schatz, M. C. (December 2016) Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods, 13 (12). pp. 1050-1054. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

Chio, Iok In Christine, Jafarnejad, Seyed Mehdi, Ponz-Sarvise, Mariano, Park, Youngkyu, Rivera, Keith, Palm, Wilhelm, Wilson, John, Sangar, Vineet, Hao, Yuan, Öhlund, Daniel, Wright, Kevin, Filippini, Dea, Lee, Eun Jung, Da Silva, Brandon, Schoepfer, Christina, Wilkinson, John Erby, Buscaglia, Jonathan M, DeNicola, Gina M, Tiriac, Herve, Hammell, Molly, Crawford, Howard C, Schmidt, Edward E, Thompson, Craig B, Pappin, Darryl J, Sonenberg, Nahum, Tuveson, David A (August 2016) NRF2 Promotes Tumor Maintenance by Modulating mRNA Translation in Pancreatic Cancer. Cell, 166 (4). pp. 963-976. ISSN 0092-8674

Choi, K., Reinhard, C., Serra, H., Ziolkowski, P. A., Underwood, C. J., Zhao, X., Hardcastle, T. J., Yelina, N. E., Griffin, C., Jackson, M., Mezard, C., McVean, G., Copenhaver, G. P., Henderson, I. R. (July 2016) Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. PLoS Genet, 12 (7). e1006179. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Christov-Moore, L., Sugiyama, T., Grigaityte, K., Iacoboni, M. (April 2016) Increasing generosity by disrupting prefrontal cortex. Soc Neurosci, 12 (2). pp. 174-181. ISSN 1747-0927 (Electronic)1747-0919 (Linking)

Churchland, A. (December 2016) Q&A with Anne Churchland. Neuron, 92 (5). pp. 940-942. ISSN 0896-6273

Churchland, A. K., Abbott, L. F. (February 2016) Conceptual and technical advances define a key moment for theoretical neuroscience. Nat Neurosci, 19 (3). pp. 348-9. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Churchland, Anne K., Kiani, Roozbeh (October 2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11. pp. 74-80. ISSN 2352-1546

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., Gillis, J. (May 2016) Exploiting single-cell expression to characterize co-expression replicability. Genome Biol, 17 (1). p. 101. ISSN 1474-760X (Electronic)1474-7596 (Linking) (Public Dataset)

D'Rozario, J., Knoblich, K., Roberts, D., De Campos, J. D., Astarita, J., Mansell, A., Denton, A., Fearon, D., Withers, D., Barone, F., Turley, S., Boyd, R. L., Heng, T., Fletcher, A. L. (August 2016) Human and murine fibroblastic reticular cells play specialized roles in innate immune cellular crosstalk. European Journal of Immunology, 46. p. 144. ISSN 0014-2980

Defelipe, Javier, Douglas, Rodney, Hill, Sean L, Lein, Edward S, Martin, Kevan, Rockland, Kathleen S, Segev, Idan, Shepherd, Gordon M, Tamás, Gábor (June 2016) Comments and general discussion on “The anatomical problem posed by brain complexity and size: a potential solution”. Frontiers in Neuroanatomy, 10. ISSN 1662-5129

Delevich, K., Abi-Dargham, A., Hall, J., Sawa, A. (October 2016) Studying schizophrenia in the post-genomic era: perspectives from the 2016 summer Banbury Workshop at Cold Spring Harbor Laboratory. Mol Psychiatry. ISSN 1476-5578 (Electronic)1359-4184 (Linking)

Denk, Franziska, Crow, Megan, Didangelos, Athanasios, Lopes, Douglas M, McMahon, Stephen B (May 2016) Persistent Alterations in Microglial Enhancers in a Model of Chronic Pain. Cell Reports, 15 (8). pp. 1771-81. ISSN 2211-1247

Denton, A., Magiera, L., Watts, A., Fearon, D. (August 2016) Lymph node stromal cells derive from a distinct embryonic FAP plus progenitor. European Journal of Immunology, 46 (Supple). p. 507. ISSN 0014-2980

Desai, A., Connelly, J. J., March, M., Hou, C., Chiavacci, R. , Kim, C., Lyon, G., Hadley, D., Hakonarson, H. (February 2016) Systematic data-querying of large pediatric biorepository identifies novel Ehlers-Danlos Syndrome variant. BMC Musculoskelet Disord, 17 (1). p. 80.

Diaz-Balzac, C. A., Rahman, M., Lazaro-Pena, M. I., Martin Hernandez, L. A., Salzberg, Y., Aguirre-Chen, C., Kaprielian, Z., Bulow, H. E. (September 2016) Muscle- and Skin-Derived Cues Jointly Orchestrate Patterning of Somatosensory Dendrites. Curr Biol, 26 (17). pp. 2379-2387. ISSN 1879-0445 (Electronic)0960-9822 (Linking)

Diermeier, S. D., Chang, K. C., Freier, S. M., Rigo, F., Bennett, C. F., Spector, D. L. (March 2016) Long noncoding RNAs as targets of mammary tumor cell proliferation and migration. Cancer Research, 76. ISSN 0008-5472

Diermeier, Sarah D, Chang, Kung-Chi, Freier, Susan M, Song, Junyan, El Demerdash, Osama, Krasnitz, Alexander, Rigo, Frank, Bennett, C.  Frank, Spector, David L (September 2016) Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration. Cell Reports, 17 (1). pp. 261-274. ISSN 2211-1247 (Public Dataset)

Djebali, S, Rodriguez Martin, B, Palumbo, E, Pervouchine, DD, Breschi, A, Davis, C, Dobin, A, Alonso, G, Rastrojo, A, Aguado, B, Gingeras, TR, Guigo, R (September 2016) Recurrent chimeric transcripts in human and mouse. In: Functional Annotation of Animal Genomes (FAANG) ASAS-ISAG Joint Symposium.

Do Monte, F. H., Quirk, G. J., Li, B., Penzo, M. A. (August 2016) Retrieving fear memories, as time goes by. Mol Psychiatry, 21 (8). pp. 1027-1036. ISSN 1476-5578 (Electronic)1359-4184 (Linking)

Dobin, A., Gingeras, T. R. (April 2016) Optimizing RNA-Seq Mapping with STAR. Methods Mol Biol, 1415. pp. 245-262. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Dodgson, S. E., Santaguida, S., Kim, S., Sheltzer, J., Amon, A. (November 2016) The pleiotropic deubiquitinase Ubp3 confers aneuploidy tolerance. Genes Dev. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Dominguez-Brauer, C., Hao, Z., Elia, A. J., Fortin, J. M., Nechanitzky, R., Brauer, P. M., Sheng, Y., Mana, M. D., Chio, II, Haight, J., Pollett, A., Cairns, R., Tworzyanski, L., Inoue, S., Reardon, C., Marques, A., Silvester, J., Cox, M. A., Wakeham, A., Yilmaz, O. H., Sabatini, D. M., van Es, J. H., Clevers, H., Sato, T., Mak, T. W. (August 2016) Mule Regulates the Intestinal Stem Cell Niche via the Wnt Pathway and Targets EphB3 for Proteasomal and Lysosomal Degradation. Cell Stem Cell, 19 (2). pp. 205-16. ISSN 1875-9777 (Electronic)

Dominoni, D. M., Borniger, J. C., Nelson, R. J. (February 2016) Light at night, clocks and health: from humans to wild organisms. Biol Lett, 12 (2). p. 20160015. ISSN 1744-957X (Electronic)1744-9561 (Linking)

Drew, L. J., Kheirbek, M. A., Luna, V. M., Denny, C. A., Cloidt, M. A., Wu, M. V., Jain, S., Scharfman, H. E., Hen, R. (June 2016) Activation of local inhibitory circuits in the dentate gyrus by adult-born neurons. Hippocampus, 26 (6). pp. 763-78. ISSN 1098-1063 (Electronic)1050-9631 (Linking)

Dukler, N., Gulko, B., Huang, Y. F., Siepel, A. (December 2016) Is a super-enhancer greater than the sum of its parts? Nat Genet, 49 (1). pp. 2-3. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Dzien, P., Tee, S. S., Kettunen, M. I., Lyons, S. K., Larkin, T. J., Timm, K. N., Hu, D. E., Wright, A., Rodrigues, T. B., Serrao, E. M., Marco-Rius, I., Mannion, E., D'Santos, P., Kennedy, B. W., Brindle, K. M. (August 2016) (13) C magnetic resonance spectroscopy measurements with hyperpolarized [1-(13) C] pyruvate can be used to detect the expression of transgenic pyruvate decarboxylase activity in vivo. Magn Reson Med, 76 (2). pp. 391-401. ISSN 1522-2594 (Electronic)0740-3194 (Linking)

Ebbesen, S. H., Scaltriti, M., Bialucha, C. U., Morse, N., Kastenhuber, E. R., Wen, H. Y., Dow, L. E., Baselga, J., Lowe, S. W. (March 2016) Pten loss promotes MAPK pathway dependency in HER2/neu breast carcinomas. Proc Natl Acad Sci U S A, 113 (11). pp. 3030-3035. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Elsayed, G. F., Lara, A. H., Kaufman, M. T., Churchland, M. M., Cunningham, J. P. (October 2016) Reorganization between preparatory and movement population responses in motor cortex. Nat Commun, 7. p. 13239. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Engel, T. A., Steinmetz, N. A., Gieselmann, M. A., Thiele, A., Moore, T., Boahen, K. (December 2016) Selective modulation of cortical state during spatial attention. Science, 354 (6316). pp. 1140-1144. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Espana-Agusti, J., Zou, X. G., Wong, K., Fu, B. Y., Yang, F. T., Tuveson, D. A., Adams, D. J., Matakidou, A. (February 2016) Generation and Characterisation of a Pax8-CreER(T2) Transgenic Line and a Slc22a6-CreER(T2) Knock-In Line for Inducible and Specific Genetic Manipulation of Renal Tubular Epithelial Cells. Plos One, 11 (2). ISSN 1932-6203

Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., Matthews, L., May, B., Milacic, M., Rothfels, K., Shamovsky, V., Webber, M., Weiser, J., Williams, M., Wu, G., Stein, L., Hermjakob, H., D'Eustachio, P. (January 2016) The Reactome pathway Knowledgebase. Nucleic Acids Res, 44 (D1). D481-487. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Fagegaltier, D., Falciatori, I., Czech, B., Castel, S., Perrimon, N., Simcox, A., Hannon, G. J. (July 2016) Oncogenic transformation of Drosophila somatic cells induces a functional piRNA pathway. Genes Dev, 30 (14). pp. 1623-35. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Fan, G., Zhang, S., Gao, Y., Greer, P. A., Tonks, N. K. (July 2016) HGF-independent regulation of MET and GAB1 by nonreceptor tyrosine kinase FER potentiates metastasis in ovarian cancer. Genes Dev, 30 (13). pp. 1542-57. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Fang, H., Bergmann, E. A., Arora, K., Vacic, V., Zody, M. C., Iossifov, I., O'Rawe, J. A., Wu, Y., Jimenez Barron, L. T., Rosenbaum, J., Ronemus, M., Lee, Y. H., Wang, Z., Dikoglu, E., Jobanputra, V., Lyon, G. J., Wigler, M., Schatz, M. C., Narzisi, G. (December 2016) Indel variant analysis of short-read sequencing data with Scalpel. Nat Protoc, 11 (12). pp. 2529-2548. ISSN 1750-2799 (Electronic)1750-2799 (Linking)

Fearon, D. (June 2016) Combination immunotherapy for cancer. J Exp Med, 213 (7). p. 1115. ISSN 1540-9538 (Electronic)0022-1007 (Linking)

Feigin, M. E., Tuveson, D. A. (2016) Challenges and Opportunities in Modeling Pancreatic Cancer. Cold Spring Harb Symp Quant Biol, 81. pp. 231-235. ISSN 0091-7451

Feike, D., Seung, D., Graf, A., Bischof, S., Ellick, T., Coiro, M., Soyk, S., Eicke, S., Mettler-Altmann, T., Lu, K. J., Trick, M., Zeeman, S. C., Smith, A. M. (June 2016) The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. Plant Cell, 28 (6). pp. 1472-89. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Fein, Miriam R, Almeida, Ana S, Eberhardt, Anais, Egeblad, Mikala (January 2016) Cancer cell expression of CCR2 regulates the PD-L1/PD-1 immune checkpoint in breast cancer. In: CRI-CIMT-EATI-AACR Inaugural International Cancer Immunotherapy Conference: Translating Science into Survival.

Felling, Ryan J., Covey, Matthew V., Wolujewicz, Paul, Batish, Mona, Levison, Steven W. (December 2016) Astrocyte-produced leukemia inhibitory factor expands the neural stem/progenitor pool following perinatal hypoxia–ischemia. Journal of Neuroscience Research, 94 (12). pp. 1531-1545. ISSN 1097-4547

Ferrante, D. D., Wei, Y., Koulakov, A. A. (June 2016) Mathematical Model of Evolution of Brain Parcellation. Front Neural Circuits, 10. p. 43. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Flint, T. R., Janowitz, T., Connell, C. M., Roberts, E. W., Denton, A. E., Coll, A. P., Jodrell, D. I., Fearon, D. T. (November 2016) Tumor-Induced IL-6 Reprograms Host Metabolism to Suppress Anti-tumor Immunity. Cell Metab, 24 (5). pp. 672-684. ISSN 1932-7420 (Electronic)1550-4131 (Linking)

Frangeul, Laura, Pouchelon, Gabrielle, Telley, Ludovic, Lefort, Sandrine, Luscher, Christian, Jabaudon, Denis (October 2016) A cross-modal genetic framework for the development and plasticity of sensory pathways. Nature, 538 (7623). pp. 96-98. ISSN 0028-0836

Fransz, P., Linc, G., Lee, C. R., Aflitos, S. A., Lasky, J. R., Toomajian, C., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schubert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T. E., de Jong, H., Schranz, M. E. (October 2016) Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J, 88 (2). pp. 159-178. ISSN 1365-313X (Electronic)0960-7412 (Linking)

Freedman, A. H., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Davis, B. W., Gronau, I., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., Lorente-Galdos, B., Ramirez, O., Hormozdiari, F., Alkan, C., Vila, C., Squire, K., Geffen, E., Kusak, J., Boyko, A. R., Parker, H. G., Lee, C., Tadigotla, V., Siepel, A., Bustamante, C. D., Harkins, T. T., Nelson, S. F., Marques-Bonet, T., Ostrander, E. A., Wayne, R. K., Novembre, J. (March 2016) Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. PLoS Genet, 12 (3). e1005851. ISSN 1553-7390

Gerhard, D. S., Clemons, P. A., Shamji, A. F., Hon, C., Wagner, B. K., Schreiber, S. L., Krasnitz, A., Sordella, R., Sander, C., Lowe, S. W., Powers, S., Smith, K., Aburi, M., Iavarone, A., Lasorella, A., Silva, J., Stockwell, B. R., Califano, A., Boehm, J. S., Vazquez, F., Weir, B. A., Hahn, W. C., Khuri, F. R., Moreno, C. S., Johns, M., Fu, H., Nikolova, O., Mendez, E., Gadi, V. K., Margolin, A. A., Grandori, C., Kemp, C. J., Warren, E. H., Riddell, S. R., McIntosh, M. W., Gevaert, O., Kuo, C. J., Ji, H. P., Dhruv, H., Finlay, D., Kiefer, J., Kim, S., Vuori, K., Berens, M. E., Hangauer, M., Boettcher, M., Weissman, J. S., Bivona, T. G., Bandyopadhyay, S., McManus, M. T., McCormick, F., Aksoy, O., Simonds, E. F., Zheng, T., Chen, J., An, Z., Balmain, A., Weiss, W. A., Chen, K., Liang, H., Scott, K. L., Mills, G. B., Posner, B. A., MacMillan, J., Minna, J., White, M., Roth, M. G., Jagu, S., Mazerik, J. (July 2016) Transforming Big Data into cancer-relevant insight: An initial, multi-tier approach to assess reproducibility and relevance. Mol Cancer Res. ISSN 1557-3125 (Electronic)1541-7786 (Linking)

Gholami, Sepideh, Wood, Lauren, Berry, Gerald, Triadafilopoulos, George, Visser, Brendan C, Dua, Monica M (November 2016) Recurrent Pyogenic Cholangitis: Got Stones? Digestive Diseases and Sciences, 61 (11). pp. 3147-3150. ISSN 0163-2116

Gholami, Sepideh, Wood, Lauren SY, Bingham, David, Kin, Cindy (April 2016) Double Rarities, Double Challenges: Extra-Mammary Paget's Disease and Anal Adenocarcinoma. Digestive Diseases and Sciences, 61 (4). pp. 996-999. ISSN 0163-2116

Goes, F. S., Pirooznia, M., Parla, J. S., Kramer, M., Ghiban, E., Mavruk, S., Chen, Y. C., Monson, E. T., Willour, V. L., Karchin, R., Flickinger, M., Locke, A. E., Levy, S. E., Scott, L. J., Boehnke, M., Stahl, E., Moran, J. L., Hultman, C. M., Landen, M., Purcell, S. M., Sklar, P., Zandi, P. P., McCombie, W. R., Potash, J. B. (July 2016) Exome Sequencing of Familial Bipolar Disorder. JAMA Psychiatry, 73 (6). pp. 590-597. ISSN 2168-6238 (Electronic)2168-622X (Linking)

Goldie, S. J., Lyons, S. K. (November 2016) Irrigation of cutaneous squamous cell carcinoma wounds to prevent local recurrence. J Plast Reconstr Aesthet Surg, 69 (11). pp. 1565-1568. ISSN 1878-0539 (Electronic)1748-6815 (Linking)

Golicz, A. A., Bayer, P. E., Barker, G. C., Edger, P. P., Kim, H., Martinez, P. A., Chan, C. K., Severn-Ellis, A., McCombie, W. R., Parkin, I. A., Paterson, A. H., Pires, J. C., Sharpe, A. G., Tang, H., Teakle, G. R., Town, C. D., Batley, J., Edwards, D. (November 2016) The pangenome of an agronomically important crop plant Brassica oleracea. Nat Commun, 7. p. 13390. ISSN 2041-1723 (Electronic)2041-1723 (Linking) (Public Dataset)

Gomez-Marin, A., Oron, E., Gakamsky, A., Dan, Valente, Benjamini, Y., Golani, I. (June 2016) Generative rules of Drosophila locomotor behavior as a candidate homology across phyla. Sci Rep, 6. p. 27555. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Goodwin, S., McPherson, J. D., McCombie, W. R. (May 2016) Coming of age: ten years of next-generation sequencing technologies. Nat Rev Genet, 17 (6). pp. 333-51. ISSN 1471-0064 (Electronic)1471-0056 (Linking)

Griffin, A., Tolpygo, A., Parikh, G., Turtzo, C., Moses, A., Ray-Chaudhury, A., Dardzinksi, B., Mitra, P., Latour, L. (July 2016) MRI EVALUATION OF MICROBLEEDS MAY REVEAL ONLY THE TIP OF THE ICEBERG: A 3D HISTOLOGICAL ANALYSIS. Journal of Neurotrauma, 33 (13). A59-A59. ISSN 0897-7151

Gupta, Priyanka, Albeanu, Dinu F, Bhalla, Upinder S (September 2016) An odor delivery system for arbitrary time-varying patterns of odors, mixtures and concentrations. bioRxiv. (Submitted)

Gupta, P., Bhalla, U. S. (June 2016) Minority odors get equal say. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Gupta, Parul, Naithani, Sushma, Tello-Ruiz, Marcela Karey, Chougule, Kapeel, D’Eustachio, Peter, Fabregat, Antonio, Jiao, Yinping, Keays, Maria, Lee, Young Koung, Kumari, Sunita, Mulvaney, Joseph, Olson, Andrew, Preece, Justin, Stein, Joshua, Wei, Sharon, Weiser, Joel, Huerta, Laura, Petryszak, Robert, Kersey, Paul, Stein, Lincoln D., Ware, Doreen, Jaiswal, Pankaj (November 2016) Gramene Database: Navigating Plant Comparative Genomics Resources. Current Plant Biology, 7-8. pp. 10-15. ISSN 2214-6628

Hachiya, T., Ueda, N., Kitagawa, M., Hanke, G., Suzuki, A., Hase, T., Sakakibara, H. (September 2016) Arabidopsis Root-Type Ferredoxin:NADP(H) Oxidoreductase 2 Is Involved in Detoxification of Nitrite in Roots. Plant Cell Physiol, 57 (11). pp. 2440-2450. ISSN 1471-9053 (Electronic)0032-0781 (Linking)

Hammell, Christopher M, Hannon, Gregory J (January 2016) Inducing RNAi in Caenorhabditis elegans by Injection of dsRNA. Cold Spring Harbor protocols, 2016 (1). pdb.prot086306. ISSN 1940-3402

Han, L. C., Stanley, P. A., Wood, P. J., Sharma, P., Kuruppu, A. I., Bradshaw, T. D., Moses, J. E. (August 2016) Horner-Wadsworth-Emmons approach to piperlongumine analogues with potent anti-cancer activity. Org Biomol Chem, 14 (31). pp. 7585-93. ISSN 1477-0520

Hangya, B., Sanders, J. L., Kepecs, A. (September 2016) A Mathematical Framework for Statistical Decision Confidence. Neural Comput, 28 (9). pp. 1840-1858. ISSN 1530-888X (Electronic)0899-7667 (Linking)

He, F., Yoo, S., Wang, D., Kumari, S., Gerstein, M., Ware, D., Maslov, S. (June 2016) Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis. Plant J, 86 (6). pp. 472-80. ISSN 1365-313X (Electronic)0960-7412 (Linking)

He, M., Tucciarone, J., Lee, S., Nigro, M. J., Kim, Y., Levine, J. M., Kelly, S. M., Krugikov, I., Wu, P., Chen, Y., Gong, L., Hou, Y., Osten, P., Rudy, B., Huang, Z. J. (September 2016) Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex. Neuron, 91 (6). pp. 1228-1243. ISSN 1097-4199 (Electronic)0896-6273 (Linking)

Herrera, V. L., Steffen, M., Moran, A. M., Tan, G. A., Pasion, K. A., Rivera, K., Pappin, D. J., Ruiz-Opazo, N. (June 2016) Confirmation of translatability and functionality certifies the dual endothelin1/VEGFsp receptor (DEspR) protein. BMC Mol Biol, 17 (1). p. 15. ISSN 1471-2199 (Electronic)1471-2199 (Linking)

Herrero, J., Muffato, M., Beal, K., Fitzgerald, S., Gordon, L., Pignatelli, M., Vilella, A. J., Searle, S. M., Amode, R., Brent, S., Spooner, W., Kulesha, E., Yates, A., Flicek, P. (February 2016) Ensembl comparative genomics resources. Database : the journal of biological databases and curation, 2016. ISSN 17580463 (ISSN)

Hige, T., Aso, Y., Modi, M. N., Rubin, G. M., Turner, G. C. (November 2016) Flexible olfactory coding by mushroom body output neurons of Drosophila. Chemical Senses, 41 (9). E150-E150. ISSN 0379-864X1464-3553

Hirschtritt, M. E., Darrow, S. M., Illmann, C., Osiecki, L., Grados, M., Sandor, P., Dion, Y., King, R. A., Pauls, D. L., Budman, C. L., Cath, D. C., Greenberg, E., Lyon, G. J., Yu, D., McGrath, L. M., McMahon, W. M., Lee, P. C., Delucchi, K. L., Scharf, J. M., Mathews, C. A. (August 2016) Social disinhibition is a heritable subphenotype of tics in Tourette syndrome. Neurology, 87 (5). pp. 497-504. ISSN 0028-3878

Ho, J. M., Reynolds, N. M., Rivera, K., Connolly, M., Guo, L. T., Ling, J. Q., Pappin, D. J., Church, G. M., Soll, D. (February 2016) Efficient Reassignment of a Frequent Serine Codon in Wild-Type Escherichia coli. ACS Synthetic Biology, 5 (2). pp. 163-171. ISSN 2161-5063

Hohmann, A. F. (May 2016) Function and Inhibition of BRD9 in Acute Myeloid Leukemia Cells. PhD thesis, Cold Spring Harbor Laboratory.

Hohmann, A. F., Martin, L. J., Minder, J. L., Roe, J. S., Shi, J., Steurer, S., Bader, G., McConnell, D., Pearson, M., Gerstberger, T., Gottschamel, T., Thompson, D., Suzuki, Y., Koegl, M., Vakoc, C. R. (September 2016) Sensitivity and engineered resistance of myeloid leukemia cells to BRD9 inhibition. Nat Chem Biol, 12 (9). pp. 672-9. ISSN 1552-4469 (Electronic)1552-4450 (Linking) (Public Dataset)

Hossain, M., Stillman, B. (2016) Meier-gorlin syndrome. In: The Initiation of DNA Replication in Eukaryotes. Springer, pp. 503-524. ISBN 978-331924696-3978-331924694-9

Hossain, M., Stillman, B. (July 2016) Opposing roles for DNA replication initiator proteins ORC1 and CDC6 in control of Cyclin E gene transcription. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking) (Public Dataset)

Hou, Xun Helen, Hyun, Minsuk, Taranda, Julian, Huang, Kee Wui, Todd, Emmalee, Feng, Danielle, Atwater, Emily, Croney, Donyell, Zeidel, Mark Lawrence, Osten, Pavel, Sabatini, Bernardo Luis (September 2016) Central Control Circuit for Context-Dependent Micturition. Cell, 167 (1). pp. 73-86. ISSN 0092-8674

Howarth, Dianella G, Dunn, Matthew P (2016) Phylogenetic Approach to Studying Developmental Evolution: A Model Clade Approach. In: Encyclopedia of Evolutionary Biology. Academic Press, Waltham, Massachusetts, USA, pp. 246-253.

Hua, Y., Krainer, A. R. (2016) Antisense-Oligonucleotide Modulation of SMN2 Pre-mRNA Splicing. In: Spinal Muscular Atrophy: Disease Mechanisms and Therapy. Elsevier, pp. 301-311. ISBN 978-012803686-0978-012803685-3

Huang, L., Ung, K., Garcia, I., Quast, K. B., Cordiner, K., Saggau, P., Arenkiel, B. R. (August 2016) Task Learning Promotes Plasticity of Interneuron Connectivity Maps in the Olfactory Bulb. Journal of Neuroscience, 36 (34). pp. 8856-8871. ISSN 1529-2401

Huang, Yu-Han, Vakoc, Christopher R (July 2016) A Biomarker Harvest from One Thousand Cancer Cell Lines. Cell, 166 (3). pp. 536-537. ISSN 0092-8674

Huilgol, D., Tole, S. (July 2016) Cell migration in the developing rodent olfactory system. Cell Mol Life Sci, 73 (13). pp. 2467-2490. ISSN 1420-9071 (Electronic)1420-682X (Linking)

Husbands, A. Y., Aggarwal, V., Ha, T., Timmermans, M. C. (August 2016) In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 28 (8). pp. 1783-94. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Hwang, C. I., Boj, S. F., Clevers, H., Tuveson, D. A. (January 2016) Pre-clinical Models of Pancreatic Ductal Adenocarcinoma. J Pathol, 238 (2). pp. 197-204. ISSN 1096-9896 (Electronic)0022-3417 (Linking)

Ireland, L., Santos, A., Ahmed, M. S., Rainer, C., Nielsen, S. R., Quaranta, V., Weyer-Czernilofsky, U., Engle, D. D., Perez-Mancera, P., Coupland, S. E., Taktak, A. F., Bogenrieder, T., Tuveson, D. A., Campbell, F., Schmid, M. C., Mielgo, A. (December 2016) Chemoresistance in pancreatic cancer is driven by stroma-derived insulin-like growth factors. Cancer Res, 76 (23). pp. 6851-6863. ISSN 1538-7445 (Electronic)0008-5472 (Linking)

Ireland, William, Kinney, Justin (May 2016) MPAthic: Quantitative Modeling of Sequence-Function Relationships for massively parallel assays. BioRxiv. (Unpublished)

Jang, Woo-Sik, Koo, Peter, Bryson, Kyle, Narayanan, Suresh, Sandy, Alec R., Russell, Thomas P., Mochrie, Simon G. (2016) The Static Structure and Dynamics of Cadmium Sulfide Nanoparticles within Poly(styrene-block-isoprene) Diblock Copolymer Melts. Macromolecular Chemistry and Physics, 217 (4). pp. 591-598. ISSN 1022-1352

Janowitz, T., Thuss-Patience, P., Marshall, A., Kang, J. H., Connell, C., Cook, N., Dunn, J., Park, S. H., Ford, H. (February 2016) Chemotherapy vs supportive care alone for relapsed gastric, gastroesophageal junction, and oesophageal adenocarcinoma: a meta-analysis of patient-level data. Br J Cancer, 114 (4). pp. 381-7. ISSN 0007-0920

Je, B. I., Gruel, J., Lee, Y. K., Bommert, P., Arevalo, E. D., Eveland, A. L., Wu, Q., Goldshmidt, A., Meeley, R., Bartlett, M., Komatsu, M., Sakai, H., Jonsson, H., Jackson, D. (July 2016) Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits. Nat Genet, 48 (7). pp. 785-791. ISSN 1546-1718 (Electronic)1061-4036 (Linking) (Public Dataset)

Jenkinson, C., Elliott, V., Evans, A., Oldfield, L., Jenkins, R. E., O'Brien, D. P., Apostolidou, S., Gentry-Maharaj, A., Fourkala, E. O., Jacobs, I., Menon, U., Cox, T. F., Campbell, F., Pereira, S. P., Tuveson, D. A., Park, P. K., Greenhalf, W., Sutton, R. Professor, Timms, J. F., Neoptolemos, J., Costello, E. (April 2016) Decreased serum thrombospondin-1 levels in pancreatic cancer patients up to 24 months prior to clinical diagnosis: association with diabetes mellitus. Clin Cancer Res, 22 (7). pp. 1734-43. ISSN 1078-0432 (Electronic)1078-0432 (Linking)

Jeong, M., Kim, Y., Kim, J., Ferrante, D. D., Mitra, P. P., Osten, P., Kim, D. (February 2016) Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports, 6. ISSN 20452322

Jia, Bojing, Wee, Tse-Luen, Boudreau, Colton G, Berard, Daniel J, Mallik, Adiel, Juncker, David, Brown, Claire M, Leslie, Sabrina R (2016) Parallelized cytoindentation using convex micropatterned surfaces. BioTechniques, 61 (2). pp. 73-82. ISSN 0736-6205

Jiang, Y., Oron, T. R., Clark, W. T., Bankapur, A. R., D'Andrea, D., Lepore, R., Funk, C. S., Kahanda, I., Verspoor, K. M., Ben-Hur, A., Koo da, C. E., Penfold-Brown, D., Shasha, D., Youngs, N., Bonneau, R., Lin, A., Sahraeian, S. M., Martelli, P. L., Profiti, G., Casadio, R., Cao, R., Zhong, Z., Cheng, J., Altenhoff, A., Skunca, N., Dessimoz, C., Dogan, T., Hakala, K., Kaewphan, S., Mehryary, F., Salakoski, T., Ginter, F., Fang, H., Smithers, B., Oates, M., Gough, J., Toronen, P., Koskinen, P., Holm, L., Chen, C. T., Hsu, W. L., Bryson, K., Cozzetto, D., Minneci, F., Jones, D. T., Chapman, S., Bkc, D., Khan, I. K., Kihara, D., Ofer, D., Rappoport, N., Stern, A., Cibrian-Uhalte, E., Denny, P., Foulger, R. E., Hieta, R., Legge, D., Lovering, R. C., Magrane, M., Melidoni, A. N., Mutowo-Meullenet, P., Pichler, K., Shypitsyna, A., Li, B., Zakeri, P., ElShal, S., Tranchevent, L. C., Das, S., Dawson, N. L., Lee, D., Lees, J. G., Sillitoe, I., Bhat, P., Nepusz, T., Romero, A. E., Sasidharan, R., Yang, H., Paccanaro, A., Gillis, J., Sedeno-Cortes, A. E., Pavlidis, P., Feng, S., Cejuela, J. M., Goldberg, T., Hamp, T., Richter, L., Salamov, A., Gabaldon, T., Marcet-Houben, M., Supek, F., Gong, Q., Ning, W., Zhou, Y., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Toppo, S., Ferrari, C., Giollo, M. (September 2016) An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol, 17 (1). p. 184. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Jiao, Y., Burke, J. J., Chopra, R., Burow, G., Chen, J., Wang, B., Hayes, C., Emendack, Y., Ware, D., Xin, Z. (July 2016) A Sorghum Mutant Resource as an Efficient Platform for Gene Discovery in Grasses. Plant Cell, 28 (7). pp. 1551-1562. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Jordan, Shawn (2016) David Spector: Coordinating gene expression in space and time. The Journal of Cell Biology, 214 (7). pp. 786-787.

Karnani, Mahesh M, Jackson, Jesse, Ayzenshtat, Inbal, Tucciarone, Jason, Manoocheri, Kasra, Snider, William G, Yuste, Rafael (April 2016) Cooperative Subnetworks of Molecularly Similar Interneurons in Mouse Neocortex. Neuron, 90 (1). pp. 86-100. ISSN 0896-6273

Kaufman, M. T., Churchland, A. K. (November 2016) Many paths from state to state. Nat Neurosci, 19 (12). pp. 1541-1542. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Kaufman, M. T., Seely, J. S., Sussillo, D., Ryu, S. I., Shenoy, K. V., Churchland, M. M. (August 2016) The Largest Response Component in the Motor Cortex Reflects Movement Timing but Not Movement Type. eNeuro, 3 (4). ISSN 2373-2822 (Electronic)2373-2822 (Linking)

Kebschull, J. M., Garcia da Silva, P., Zador, A. M. (May 2016) A New Defective Helper RNA to Produce Recombinant Sindbis Virus that Infects Neurons but does not Propagate. Front Neuroanat, 10. p. 56. ISSN 1662-5129 (Electronic)1662-5129 (Linking)

Kebschull, Justus M, Garcia da Silva, Pedro, Reid, Ashlan P, Peikon, Ian D, Albeanu, Dinu F, Zador, Anthony M (September 2016) High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA. Neuron, 91 (5). pp. 975-987. ISSN 0896-6273 (Public Dataset)

Keil, M., Sonner, J. K., Lanz, T. V., Oezen, I., Bunse, T., Bittner, S., Meyer, H. V., Meuth, S. G., Wick, W., Platten, M. (August 2016) General control non-derepressible 2 (GCN2) in T cells controls disease progression of autoimmune neuroinflammation. J Neuroimmunol, 297. pp. 117-26. ISSN 0165-5728

Kepple, Daniel, Giaffar, Hamza, Rinberg, Dmitry, Koulakov, Alexei (September 2016) Deconstructing Odorant Identity via Primacy in Dual Networks. arXiv. (Submitted)

Kersey, P. J., Allen, J. E., Armean, I., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Falin, L. J., Grabmueller, C., Humphrey, J., Kerhornou, A., Khobova, J., Aranganathan, N. K., Langridge, N., Lowy, E., McDowall, M. D., Maheswari, U., Nuhn, M., Ong, C. K., Overduin, B., Paulini, M., Pedro, H., Perry, E., Spudich, G., Tapanari, E., Walts, B., Williams, G., Tello-Ruiz, M., Stein, J., Wei, S., Ware, D., Bolser, D. M., Howe, K. L., Kulesha, E., Lawson, D., Maslen, G., Staines, D. M. (January 2016) Ensembl Genomes 2016: more genomes, more complexity. Nucleic Acids Res, 44 (D1). D574-80. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Kim, Y., Perova, Z., Mirrione, M. M., Pradhan, K., Henn, F. A., Shea, S., Osten, P., Li, B. (February 2016) Whole-Brain Mapping of Neuronal Activity in the Learned Helplessness Model of Depression. Front Neural Circuits, 10. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Kleeff, J., Korc, M., Apte, M., La Vecchia, C., Johnson, C. D., Biankin, A. V., Neale, R. E., Tempero, M., Tuveson, D. A., Hruban, R. H., Neoptolemos, J. P. (April 2016) Pancreatic cancer. Nat Rev Dis Primers, 2. p. 16022. ISSN 2056-676X (Electronic)2056-676X (Linking)

Kleyner, R., Malcolmson, J., Tegay, D., Ward, K., Maughan, A., Maughan, G., Nelson, L., Wang, K., Robison, R., Lyon, G. J. (November 2016) KBG syndrome involving a single-nucleotide duplication in ANKRD11. Cold Spring Harb Mol Case Stud, 2 (6). a001131. ISSN 2373-2873 (Linking)

Kobak, D., Brendel, W., Constantinidis, C., Feierstein, C. E., Kepecs, A., Mainen, Z. F., Romo, R., Qi, X. L., Uchida, N., Machens, C. K. (April 2016) Demixed principal component analysis of neural population data. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Kohler, S., Vasilevsky, N. A., Engelstad, M., Foster, E., McMurry, J., Ayme, S., Baynam, G., Bello, S. M., Boerkoel, C. F., Boycott, K. M., Brudno, M., Buske, O. J., Chinnery, P. F., Cipriani, V., Connell, L. E., Dawkins, H. J., DeMare, L. E., Devereau, A. D., de Vries, B. B., Firth, H. V., Freson, K., Greene, D., Hamosh, A., Helbig, I., Hum, C., Jahn, J. A., James, R., Krause, R., Laulederkind, S. J., Lochmuller, H., Lyon, G. J., Ogishima, S., Olry, A., Ouwehand, W. H., Pontikos, N., Rath, A., Schaefer, F., Scott, R. H., Segal, M., Sergouniotis, P. I., Sever, R., Smith, C. L., Straub, V., Thompson, R., Turner, C., Turro, E., Veltman, M. W., Vulliamy, T., Yu, J., von Ziegenweidt, J., Zankl, A., Zuchner, S., Zemojtel, T., Jacobsen, J. O., Groza, T., Smedley, D., Mungall, C. J., Haendel, M., Robinson, P. N. (January 2016) The Human Phenotype Ontology in 2017. Nucleic Acids Res, 45 (D1). D865-D876. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Koning, J. J., Konijn, T., Lakeman, K. A., O'Toole, T., Kenswil, K. J., Raaijmakers, M. H., Michurina, T. V., Enikolopov, G., Mebius, R. E. (October 2016) Nestin-Expressing Precursors Give Rise to Both Endothelial as well as Nonendothelial Lymph Node Stromal Cells. J Immunol, 197 (7). pp. 2686-2694. ISSN 1550-6606 (Electronic)0022-1767 (Linking)

Koo, P. K., Mochrie, S. G. (November 2016) Systems-level approach to uncovering diffusive states and their transitions from single-particle trajectories. Phys Rev E, 94 (5-1). 052412. ISSN 2470-0045

Koo, P. K., Setru, S. U., Mochrie, S. G. (August 2016) Erratum: "Active drift stabilization in three dimensions via image cross-correlation" [Rev. Sci. Instrum. 84, 103705 (2013)]. Rev Sci Instrum, 87 (8). 089901. ISSN 0034-6748

Krishnan, Keerthi, Lau, Billy, Ewall, Gabrielle, Huang, Josh, Shea, Stephen David (February 2016) MECP2 regulates cortical plasticity underlying a learned behavior in adult female mice. BioRxiv. (Unpublished)

Krug, L. (March 2016) The Role of Transposable Elements in TDP-43-Mediated Neurodegeneration. PhD thesis, Cold Spring Harbor Laboratory.

Kuhlwilm, M., Gronau, I., Hubisz, M. J., de Filippo, C., Prado-Martinez, J., Kircher, M., Fu, Q., Burbano, H. A., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Marques-Bonet, T., Andres, A. M., Viola, B., Paabo, S., Meyer, M., Siepel, A., Castellano, S. (February 2016) Ancient gene flow from early modern humans into Eastern Neanderthals. Nature, 530 (7591). pp. 429-433. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Kumaran, R. I., Li, J. J., Dynan, W. S., Porteus, M. H., Spector, D. L. (May 2016) Analysis of DNA Repair Pathway Choice Upon Induction of Double-Strand Breaks by Engineered Nuclease. Molecular Therapy, 24 (Supple). S225-S225. ISSN 1525-0016

Labbe, David P, Uetani, Noriko, Vinette, Valerie, Aubry, Isabelle, Migon, Eva, Sirois, Jacinthe, Haigh, Jody J, Lessard, Laurent, Begin, Louis R, Trotman, Lloyd C, Paquet, Marilene, Tremblay, Michel L (2016) PTP1B deficiency potentiate prostate cancer invasiveness by sensitizing Pten-null tumors to high-fat diet. In: AACR Special Conference: Metabolism and Cancer, Jun 7-10, 2015, Bellevue, WA.

Labbe, D. P., Uetani, N., Vinette, V., Lessard, L., Aubry, I., Migon, E., Sirois, J., Haigh, J., Begin, L. R., Trotman, L. C., Paquet, M., Tremblay, M. L. (June 2016) PTP1B deficiency enables the ability of a high fat diet to drive the invasive character of PTEN-deficient prostate cancers. Cancer Res, 76 (11). pp. 3130-3135. ISSN 1538-7445 (Electronic)0008-5472 (Linking)

Lee, H. J., Li, C. F., Ruan, D., Powers, S., Thompson, P. A., Frohman, M. A., Chan, C. H. (September 2016) The DNA Damage Transducer RNF8 Facilitates Cancer Chemoresistance and Progression through Twist Activation. Mol Cell, 63 (6). pp. 1021-33. ISSN 1097-2765

Lee, K., Sharma, R., Shrestha, O. K., Bingman, C. A., Craig, E. A. (November 2016) Dual interaction of the Hsp70 J-protein cochaperone Zuotin with the 40S and 60S ribosomal subunits. Nat Struct Mol Biol, 23 (11). pp. 1003-1010. ISSN 1545-9993 (Print)1545-9985 (Linking)

Lemmon, Z. H., Park, S. J., Jiang, K., Van Eck, J., Schatz, M. C., Lippman, Z. B. (November 2016) The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation. Genome Res, 26 (12). pp. 1676-1686. ISSN 1549-5469 (Electronic)1088-9051 (Linking) (Public Dataset)

Li, B. (September 2016) The opposite lane: a path to memories? Nat Neurosci, 19 (10). pp. 1273-4. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Li, J., Sordella, R., Powers, S. (June 2016) Effectors and potential targets selectively upregulated in human KRAS-mutant lung adenocarcinomas. Sci Rep, 6. p. 27891. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Licht, T., Rothe, G., Kreisel, T., Wolf, B., Benny, O., Rooney, A. G., Ffrench-Constant, C., Enikolopov, G., Keshet, E. (November 2016) VEGF preconditioning leads to stem cell remodeling and attenuates age-related decay of adult hippocampal neurogenesis. Proc Natl Acad Sci U S A, 113 (48). E7828-E7836. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Linehan, W. M., Spellman, P. T., Ricketts, C. J., Creighton, C. J., Fei, S. S., Davis, C., Wheeler, D. A., Murray, B. A., Schmidt, L., Vocke, C. D., Peto, M., Al Mamun, A. A. M., Shinbrot, E., Sethi, A., Brooks, S., Rathmell, W. K., Brooks, A. N., Hoadley, K. A., Robertson, A. G., Brooks, D., Bowlby, R., Sadeghi, S., Shen, H., Weisenberger, D. J., Bootwalla, M., Baylin, S. B., Laird, P. W., Cherniack, A. D., Saksena, G., Haake, S., Li, J., Liang, H., Lu, Y., Mills, G. B., Akbani, R., Leiserson, M. D. M., Raphael, B. J., Anur, P., Bottaro, D., Albiges, L., Barnabas, N., Choueiri, T. K., Czerniak, B., Godwin, A. K., Hakimi, A. A., Ho, T. H., Hsieh, J., Ittmann, M., Kim, W. Y., Krishnan, B., Merino, M. J., Shaw, K. R. M., Reuter, V. E., Reznik, E., Shelley, C. S., Shuch, B., Signoretti, S., Srinivasan, R., Tamboli, P., Thomas, G., Tickoo, S., Burnett, K., Crain, D., Gardner, J., Lau, K., Mallery, D., Morris, S., Paulauskis, J. D., Penny, R. J., Shelton, C., Shelton, W. T., Sherman, M., Thompson, E., Yena, P., Avedon, M. T., Bowen, J., Gastier-Foster, J. M., Gerken, M., Leraas, K. M., Lichtenberg, T. M., Ramirez, N. C., Santos, T., Wise, L., Zmuda, E., Demchok, J. A., Felau, I., Hutter, C. M., Sheth, M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zenklusen, J. C., Zhang, J., Ayala, B., Baboud, J., Chudamani, S., Liu, J., Lolla, L., Naresh, R., Pihl, T., Sun, Q., Wan, Y., Wu, Y., Ally, A., Balasundaram, M., Balu, S., Beroukhim, R., Bodenheimer, T., Buhay, C., Butterfield, Y. S. N., Carlsen, R., Carter, S. L., Chao, H., Chuah, E., Clarke, A., Covington, K. R., Dahdouli, M., Dewal, N., Dhalla, N., Doddapaneni, H. V., Drummond, J. A., Gabriel, S. B., Gibbs, R. A., Guin, R., Hale, W., Hawes, A., Hayes, D. N., Holt, R. A., Hoyle, A. P., Jefferys, S. R., Jones, S. J. M., Jones, C. D., Kalra, D., Kovar, C., Lewis, L., Li, J., Ma, Y., Marra, M. A., Mayo, M., Meng, S., Meyerson, M., Mieczkowski, P. A., Moore, R. A., Morton, D., Mose, L. E., Mungall, A. J., Muzny, D., Parker, J. S., Perou, C. M., Roach, J., Schein, J. E., Schumacher, S. E., Shi, Y., Simons, J. V., Sipahimalani, P., Skelly, T., Soloway, M. G., Sougnez, C., Tam, A., Tan, D., Thiessen, N., Veluvolu, U., Wang, M., Wilkerson, M. D., Wong, T., Wu, J., Xi, L., Zhou, J., Bedford, J., Chen, F., Fu, Y., Gerstein, M., Haussler, D., Kasaian, K., Lai, P., Ling, S., Radenbaugh, A., Van Den Berg, D., Weinstein, J. N., Zhu, J., Albert, M., Alexopoulou, I., Andersen, J. J., Auman, J. T., Bartlett, J., Bastacky, S., Bergsten, J., Blute, M. L., Boice, L., Bollag, R. J., Boyd, J., Castle, E., Chen, Y. B., Cheville, J. C., Curley, E., Davies, B., DeVolk, A., Dhir, R., Dike, L., Eckman, J., Engel, J., Harr, J., Hrebinko, R., Huang, M., Huelsenbeck-Dill, L., Iacocca, M., Jacobs, B., Lobis, M., Maranchie, J. K., McMeekin, S., Myers, J., Nelson, J., Parfitt, J., Parwani, A., Petrelli, N., Rabeno, B., Roy, S., Salner, A. L., Slaton, J., Stanton, M., Thompson, R. H., Thorne, L., Tucker, K., Weinberger, P. M., Winemiller, C., Zach, L. A., Zuna, R. (2016) Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. The New England Journal of Medicine, 374 (2). pp. 135-145. ISSN 1533-4406 (Electronic)

Liu, Y., Chen, C., Xu, Z., Scuoppo, C., Rillahan, C. D., Gao, J., Spitzer, B., Bosbach, B., Kastenhuber, E. R., Baslan, T., Ackermann, S., Cheng, L., Wang, Q., Niu, T., Schultz, N., Levine, R. L., Mills, A. A., Lowe, S. W. (March 2016) Deletions linked to TP53 loss drive cancer through p53-independent mechanisms. Nature, 531 (7595). pp. 471-475. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Ludwig, M. R., Kojima, K., Bowersock, G. J., Chen, D., Jhala, N. C., Buchsbaum, D. J., Grizzle, W. E., Klug, C. A., Mobley, J. A. (February 2016) Surveying the serologic proteome in a tissue specific kras(G12D) knockin mouse model of pancreatic cancer. Proteomics, 16 (3). pp. 516-31. ISSN 1615-9861 (Electronic)1615-9853 (Linking)

Lukey, M. J., Greene, K. S., Erickson, J. W., Wilson, K. F., Cerione, R. A. (April 2016) The oncogenic transcription factor c-Jun regulates glutaminase expression and sensitizes cells to glutaminase-targeted therapy. Nat Commun, 7. p. 11321. ISSN 2041-1723

Lukey, MJ, Cerione, RA (January 2016) The regulation of cancer cell glutamine metabolism. Translational Cancer Research, 5 (S6). S1297-S1298. ISSN 2218-676X

Lyon, G. J. (February 2016) Speaker in Diagnostic Odyssey Session. In: Utah Rare Disease Symposium,, Salt Lake City, UT. (Unpublished)

Lyon, Gholson J. (2016) Human Genetic Variation and the Genotype-Phenotype Problem. [Teaching Resource] (Unpublished)

Lyon, Gholson J. (February 2016) New human neurologic and intellectual disability syndromes involving transcription, translation, and protein degradation. In: Columbia Child Neurology and Institute of Genomic Medicine, Columbia University, New York, NY. (Unpublished)

Lyon, Gholson J. (April 2016) New human neurologic and intellectual disability syndromes involving transcription, translation, and protein degradation. In: Computational Genomics Seminar Series, Icahn School of Medicine at Mount Sinai, NY. (Unpublished)

Lyon, Gholson J. (January 2016) A rare genetic “transcriptomopathy” syndrome leading to insights into more common neurologic disorders. In: New York City Wide Human Genetics Meeting 2016, Rockefeller University, New York City, NY. (Unpublished)

Lyon, Gholson J. (November 2016) Human Genetics and Rare Diseases. In: CSHL In-House Symposium, November 21th-22nd 2016, Cold Spring Harbor Laboratory. (Unpublished)

Lyon, Gholson J. (2016) N-terminal acetyltransferases and Translation. [Teaching Resource] (Unpublished)

MacAlister, C. A., Ortiz-Ramirez, C., Becker, J. D., Feijo, J. A., Lippman, Z. B. (January 2016) Hydroxyproline O-arabinosyltransferase mutants oppositely alter tip growth in Arabidopsis thaliana and Physcomitrella patens. Plant J, 85 (2). pp. 193-208. ISSN 1365-313X (Electronic)0960-7412 (Linking)

MacDiarmid, J. A., Langova, V., Bailey, D., Pattison, S. T., Pattison, S. L., Christensen, N., Armstrong, L. R., Brahmbhatt, V. N., Smolarczyk, K., Harrison, M. T., Costa, M., Mugridge, N. B., Sedliarou, I., Grimes, N. A., Kiss, D. L., Stillman, B., Hann, C. L., Gallia, G. L., Graham, R. M., Brahmbhatt, H. (April 2016) Targeted Doxorubicin Delivery to Brain Tumors via Minicells: Proof of Principle Using Dogs with Spontaneously Occurring Tumors as a Model. PLoS One, 11 (4). e0151832. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Majka, P., Chaplin, T. A., Yu, H. H., Tolpygo, A., Mitra, P. P., Wojcik, D. K., Rosa, M. G. (August 2016) Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. J Comp Neurol, 524 (11). pp. 2161-2181. ISSN 1096-9861 (Electronic)0021-9967 (Linking)

Malcolmson, J., Kleyner, R., Tegay, D., Adams, W., Ward, K., Coppinger, J., Nelson, L., Meisler, M. H., Wang, K., Robison, R., Lyon, G. J. (November 2016) SCN8A mutation in a child presenting with seizures and developmental delays. Cold Spring Harb Mol Case Stud, 2 (6). a001073. ISSN 2373-2873

Malinauskas, Tomas, Furukawa, Hiro (May 2016) Production of Heteromeric Transmembrane Receptors with Defined Subunit Stoichiometry. Structure, 24 (5). pp. 653-655. ISSN 0969-2126

Malinauskas, Tomas, Furukawa, Hiro (June 2016) Production of Heteromeric Transmembrane Receptors with Defined Subunit Stoichiometry. Structure, 24 (6). pp. 1008-1009. ISSN 0969-2126

Manchado, E., Weissmueller, S., Morris, J. P., Chen, C. C., Wullenkord, R., Lujambio, A., de Stanchina, E., Poirier, J. T., Gainor, J. F., Corcoran, R. B., Engelman, J. A., Rudin, C. M., Rosen, N., Lowe, S. W. (June 2016) A combinatorial strategy for treating KRAS-mutant lung cancer. Nature, 534. pp. 647-51. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Manzi, L., Barrow, A. S., Scott, D., Layfield, R., Wright, T. G., Moses, J. E., Oldham, N. J. (November 2016) Carbene footprinting accurately maps binding sites in protein-ligand and protein-protein interactions. Nat Commun, 7. p. 13288. ISSN 2041-1723

Martelotto, L. G., Baslan, T., Kendall, J., Rodgers, L., Cox, H., King, T. A., Weigelt, B., Hicks, J., Reis, J. S. (February 2016) Single cell sequencing analysis of formalin-fixed paraffin-embedded ductal carcinomas in situ and invasive breast cancers reveals clonal selection in the progression from in situ to invasive disease. Cancer Research, 76 (Supple). Abstract P2-05. ISSN 0008-5472

Martin, L. J., Koegl, M., Bader, G., Cockcroft, X. L., Fedorov, O., Fiegen, D., Gerstberger, T., Hofmann, M. H., Hohmann, A. F., Kessler, D., Knapp, S., Knesl, P., Kornigg, S., Muller, S., Nar, H., Rogers, C., Rumpel, K., Schaaf, O., Steurer, S., Tallant, C., Vakoc, C. R., Zeeb, M., Zoephel, A., Pearson, M., Boehmelt, G., McConnell, D. (May 2016) Structure-Based Design of an in Vivo Active Selective BRD9 Inhibitor. J Med Chem, 59 (10). pp. 4462-75. ISSN 1520-4804 (Electronic)0022-2623 (Linking)

Mathew, G., Hannan, A., Hertzler-Schaefer, K., Wang, F., Feng, G. S., Zhong, J., Zhao, J. J., Downward, J., Zhang, X. (November 2016) Targeting of Ras-mediated FGF signaling suppresses Pten-deficient skin tumor. Proc Natl Acad Sci U S A, 113 (46). pp. 13156-13161. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

McCandlish, D. M., Plotkin, J. B. (March 2016) Transcriptional errors and the drift barrier. Proc Natl Acad Sci U S A, 113 (12). pp. 3136-8. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

McCandlish, D. M., Shah, P., Plotkin, J. B. (July 2016) Epistasis and the Dynamics of Reversion in Molecular Evolution. Genetics, 203 (3). pp. 1335-51. ISSN 1943-2631 (Electronic)0016-6731 (Linking)

McFadden, D. G., Politi, K., Bhutkar, A., Chen, F. K., Song, X., Pirun, M., Santiago, P. M., Kim-Kiselak, C., Platt, J. T., Lee, E., Hodges, E., Rosebrock, A. P., Bronson, R. T., Socci, N. D., Hannon, G. J., Jacks, T., Varmus, H. (October 2016) Mutational landscape of EGFR-, MYC-, and Kras-driven genetically engineered mouse models of lung adenocarcinoma. Proc Natl Acad Sci U S A, 113 (42). E6409-E6417. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Mellman, I., Hubbard-Lucey, V. M., Tontonoz, M. J., Kalos, M. D., Chen, D. S., Allison, J. P., Drake, C. G., Levitsky, H., Lonberg, N., van der Burg, S. H., Fearon, D. T., Wherry, E. J., Lowy, I., Vonderheide, R. H., Hwu, P. (April 2016) De-Risking Immunotherapy: Report of a Consensus Workshop of the Cancer Immunotherapy Consortium of the Cancer Research Institute. Cancer Immunol Res, 4 (4). pp. 279-88. ISSN 2326-6074 (Electronic)2326-6066 (Linking)

Merchant, N., Lyons, E., Goff, S., Vaughn, M., Ware, D., Micklos, D., Antin, P. (January 2016) The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences. PLoS Biol, 14 (1). e1002342. ISSN 1545-7885 (Electronic)1544-9173 (Linking)

Mignone, J., Peunova, N., Enikolopov, G. (July 2016) Nestin-Based Reporter Transgenic Mouse Lines. Methods Mol Biol, 1453. pp. 7-14. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Miller, M., Shirole, N., Tian, R., Pal, D., Sordella, R. (December 2016) The Evolution of TP53 Mutations: From Loss-of-Function to Separation-of-Function Mutants. J Cancer Biol Res, 4 (4). ISSN 2373-9436

Moses, John E, Moorhouse, Adam D (December 2016) Correction: The growing applications of click chemistry. Chemical Society Reviews, 45 (24). p. 6888. ISSN 0306-0012

Muñoz, A., Santos Muñoz, D., Zimin, A., Yorke, J. A. (2016) Evolution of transcriptional networks in yeast: Alternative teams of transcriptional factors for different species. BMC Genomics, 17 (Suppl ). p. 826. ISSN 1471-2164

Naithani, S., Preece, J., D'Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. M., Petryszak, R., Stein, L. D., Ware, D., Jaiswal, P. (October 2016) Plant Reactome: a resource for plant pathways and comparative analysis. Nucleic Acids Res, 45 (D1). D1029-D1039. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Nattestad, Maria, Ng, Karen, Goodwin, Sara, Baslan, Timour, Sedlazeck, Fritz, Gurtowski, James, Hutton, Elizabeth, Sundaravadanam, Yogi, Garvin, Tyler, Alford, Marley, Tseng, Elizabeth, Rescheneder, Philipp, Chin, Jason, Beck, Timothy, Kramer, Melissa, McPherson, John, Hicks, James, Schatz, Michael C, McCombie, William R (2016) Comprehensive genome and transcriptome structural analysis of a breast cancer cell line using single molecule sequencing. In: Proceedings of the 107th Annual Meeting of the American Association for Cancer Research, 2016 Apr 16-20, New Orleans, LA.

Nattestad, M., Schatz, M. C. (October 2016) Assemblytics: a web analytics tool for the detection of variants from an assembly. Bioinformatics, 32 (19). pp. 3021-3023. ISSN 1367-4811 (Electronic)1367-4803 (Linking)

Nattestad, Maria, Chin, Chen-Shan, Schatz, Michael (October 2016) Ribbon: Visualizing complex genome alignments and structural variation. bioRxiv. (Unpublished)

Newberry, M. G., McCandlish, D. M., Plotkin, J. B. (December 2016) Assortative mating can impede or facilitate fixation of underdominant alleles. Theor Popul Biol, 112. pp. 14-21. ISSN 1096-0325 (Electronic)0040-5809 (Linking)

Niedworok, C. J., Brown, A. P., Jorge Cardoso, M., Osten, P., Ourselin, S., Modat, M., Margrie, T. W. (July 2016) aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data. Nat Commun, 7. p. 11879. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Nielsen, S. R., Quaranta, V., Linford, A., Emeagi, P., Rainer, C., Santos, A., Ireland, L., Sakai, T., Sakai, K., Kim, Y. S., Engle, D., Campbell, F., Palmer, D., Ko, J. H., Tuveson, D. A., Hirsch, E., Mielgo, A., Schmid, M. C. (April 2016) Macrophage-secreted granulin supports pancreatic cancer metastasis by inducing liver fibrosis. Nat Cell Biol, 18 (5). pp. 549-60. ISSN 1476-4679 (Electronic)1465-7392 (Linking)

Nomakuchi, T. T., Rigo, F., Aznarez, I., Krainer, A. R. (February 2016) Antisense oligonucleotide-directed inhibition of nonsense-mediated mRNA decay. Nat Biotechnol, 34 (2). pp. 164-166. ISSN 1546-1696 (Electronic)1087-0156 (Linking)

O'Meara, M. J., Ballouz, S., Shoichet, B. K., Gillis, J. (2016) Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction. PLoS One, 11 (7). e0160098. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Offermann, B., Knauer, S., Singh, A., Fernandez-Cachon, M. L., Klose, M., Kowar, S., Busch, H., Boerries, M. (April 2016) Boolean Modeling Reveals the Necessity of Transcriptional Regulation for Bistability in PC12 Cell Differentiation. Front Genet, 7. p. 44. ISSN 1664-8021 (Electronic)1664-8021 (Linking)

Ohman, K. A., Hashim, Y. M., Vangveravong, S., Nywening, T. M., Cullinan, D. R., Goedegebuure, S. P., Liu, J., Van Tine, B. A., Tiriac, H., Tuveson, D. A., DeNardo, D. G., Spitzer, D., Mach, R. H., Hawkins, W. G. (June 2016) Conjugation to the sigma-2 ligand SV119 overcomes uptake blockade and converts dm-Erastin into a potent pancreatic cancer therapeutic. Oncotarget, 7 (23). pp. 33529-33541. ISSN 1949-2553 (Electronic)1949-2553 (Linking)

Oran, A. R., Adams, C. M., Zhang, X. Y., Gennaro, V. J., Pfeiffer, H. K., Mellert, H. S., Seidel, H. E., Mascioli, K., Kaplan, J., Gaballa, M. R., Shen, C., Rigoutsos, I., King, M. P., Cotney, J. L., Arnold, J. J., Sharma, S. D., Martinez-Outschoorn, U. E., Vakoc, C. R., Chodosh, L. A., Thompson, J. E., Bradner, J. E., Cameron, C. E., Shadel, G. S., Eischen, C. M., McMahon, S. B. (November 2016) Multi-focal control of mitochondrial gene expression by oncogenic MYC provides potential therapeutic targets in cancer. Oncotarget, 7 (45). pp. 72395-72414. ISSN 1949-2553 (Electronic)1949-2553 (Linking)

Otazu, G. H., Masset, P. P., Albeanu, D. F. (September 2016) A Computational Role for Cortical Feedback in Odor Detection in Natural Scenes. Chemical Senses, 41 (7). E101-E102. ISSN 0379-864X

Pang, A., Carbini, M., Maki, R. G. (July 2016) Contemporary Therapy for Advanced Soft-Tissue Sarcomas in Adults: A Review. JAMA Oncol, 2 (7). pp. 941-7. ISSN 2374-2437

Park, J., Wysocki, R. W., Amoozgar, Z., Maiorino, L., Fein, M. R., Jorns, J., Schott, A. F., Kinugasa-Katayama, Y., Lee, Y., Won, N. H., Nakasone, E. S., Hearn, S. A., Kuttner, V., Qiu, J., Almeida, A. S., Perurena, N., Kessenbrock, K., Goldberg, M. S., Egeblad, M. (October 2016) Cancer cells induce metastasis-supporting neutrophil extracellular DNA traps. Sci Transl Med, 8 (361). 361ra138. ISSN 1946-6242 (Electronic)1946-6234 (Linking)

Pedmale, U. V., Huang, S. S., Zander, M., Cole, B. J., Hetzel, J., Ljung, K., Reis, P. A., Sridevi, P., Nito, K., Nery, J. R., Ecker, J. R., Chory, J. (January 2016) Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell, 164 (1-2). pp. 233-45. ISSN 0092-8674

Pichugina, T., Sugawara, T., Kaykov, A., Schierding, W., Masuda, K., Uewaki, J., Grand, R. S., Allison, J. R., Martienssen, R. A., Nurse, P., Ueno, M., O'Sullivan, J. M. (January 2016) A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Sci Rep, 6. p. 18757. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Piscuoglio, S., Ng, C. K., Murray, M. P., Guerini-Rocco, E., Martelotto, L. G., Geyer, F. C., Bidard, F. C., Berman, S., Fusco, N., Sakr, R. A., Eberle, C., De Mattos-Arruda, L., Macedo, G. S., Akram, M., Baslan, T., Hicks, J., King, T. A., Brogi, E., Norton, L., Weigelt, B., Hudis, C. A., Reis-Filho, J. S. (March 2016) The Genomic Landscape of Male Breast Cancers. Clin Cancer Res, 22 (16). pp. 4045-56. ISSN 1078-0432 (Electronic)1078-0432 (Linking)

Pisupati, S., Chartarifsky, L., Churchland, A. K. (September 2016) Decision Activity in Parietal Cortex - Leader or Follower? Trends Cogn Sci. ISSN 1879-307X (Electronic)1364-6613 (Linking)

Plavskin, Yevgeniy, Nagashima, Akitomo, Perroud, Pierre-François, Hasebe, Mitsuyasu, Quatrano, Ralph S, Atwal, Gurinder S, Timmermans, Marja C P. (February 2016) Ancient trans-Acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response. Developmental Cell, 36 (3). pp. 276-289. ISSN 1534-5807

Pollock, Ludmila, Wieber, Judy, Adams, T. J., Dick, Brian, Wargas, Robert, Eisenstein, Michael, McElheny, Victor, Satalino, Stephanie, Witkowski, J. A., Myers, Rick, Cook-Deegan, Robert (2016) The Human Genome Project: An Annotated & Interactive Scholarly Guide to the Project in the United States. Cold Spring Harbor Laboratory Library & Archives.

Popescu, G. V., Noutsos, C., Popescu, S. C. (April 2016) Big Data in Plant Science: Resources and Data Mining Tools for Plant Genomics and Proteomics. Methods Mol Biol, 1415. pp. 533-547. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Pouget, A., Drugowitsch, J., Kepecs, A. (February 2016) Confidence and certainty: distinct probabilistic quantities for different goals. Nat Neurosci, 19 (3). pp. 366-74. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Powers, S., Pollack, R. E. (April 2016) Inducing stable reversion to achieve cancer control. Nature Reviews Cancer, 16 (4). pp. 266-270. ISSN 1474-175X

Quadrana, L., Bortolini Silveira, A., Mayhew, G. F., LeBlanc, C., Martienssen, R. A., Jeddeloh, J. A., Colot, V. (June 2016) The Arabidopsis thaliana mobilome and its impact at the species level. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Raby, S, Connell, C, Janowitz, T (April 2016) A comprehensive analysis of immuno- and immunoradiotherapy trial design developments from 2000-2014. In: ESTRO.

Ramezanali, Mohammad, Mitra, Partha P, Sengupta, Anirvan M (2016) Mean Field Analysis of Sparse Reconstruction with Correlated Variables. In: European Signal Processing Conference, 29 Aug 2016 - 2 Sep 2016.

Rattay, K., Meyer, H. V., Herrmann, C., Brors, B., Kyewski, B. (February 2016) Evolutionary conserved gene co-expression drives generation of self-antigen diversity in medullary thymic epithelial cells. J Autoimmun, 67. pp. 65-75. ISSN 0896-8411

Regan, Michael C., Furukawa, Hiro (September 2016) Deeper Insights into the Allosteric Modulation of Ionotropic Glutamate Receptors. Neuron, 91 (6). pp. 1187-1189. ISSN 0896-6273

Renier, Nicolas, Adams, Eliza L, Kirst, Christoph, Wu, Zhuhao, Azevedo, Ricardo, Kohl, Johannes, Autry, Anita E, Kadiri, Lolahon, Umadevi Venkataraju, Kannan, Zhou, Yu, Wang, Victoria X, Tang, Cheuk Y, Olsen, Olav, Dulac, Catherine, Osten, Pavel, Tessier-Lavigne, Marc (June 2016) Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes. Cell, 165 (7). pp. 1789-1802. ISSN 0092-8674

Roberts, N. J., Norris, A. L., Petersen, G. M., Bondy, M. L., Brand, R., Gallinger, S., Kurtz, R. C., Olson, S. H., Rustgi, A. K., Schwartz, A. G., Stoffel, E. M., Syngal, S., Zogopoulos, G., Ali, S. Z., Axilbund, J., Chaffee, K. G., Chen, Y. C., Cote, M. L., Childs, E. J., Douville, C., Goes, F. S., Herman, J. M., Iacobuzio-Donahue, C., Kramer, M., Makohon-Moore, A., McCombie, R. W., McMahon, K. W., Niknafs, N., Parla, J., Pirooznia, M., Potash, J. B., Rhim, A. D., Smith, A. L., Wang, Y., Wolfgang, C. L., Wood, L. D., Zandi, P. P., Goggins, M., Karchin, R., Eshleman, J. R., Papadopoulos, N., Kinzler, K. W., Vogelstein, B., Hruban, R. H., Klein, A. P. (February 2016) Whole genome sequencing defines the genetic heterogeneity of familial pancreatic cancer. Cancer Discov, 6 (2). pp. 166-175. ISSN 2159-8290 (Electronic)2159-8274 (Linking)

Roche, B., Arcangioli, B., Martienssen, R. A. (October 2016) RNA interference is essential for cellular quiescence. Science, 354 (6313). ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Rockland, K. S., DeFelipe, J. (June 2016) Editorial: Neuroanatomy for the XXIst Century. Frontiers in Neuroanatomy, 10. ISSN 1662-5129

Romero-Hernandez, Annabel, Simorowski, Noriko, Karakas, Erkan, Furukawa, Hiro (December 2016) Molecular Basis for Subtype Specificity and High-Affinity Zinc Inhibition in the GluN1-GluN2A NMDA Receptor Amino-Terminal Domain. Neuron, 92 (6). pp. 1324-1336. ISSN 0896-6273 (Public Dataset)

Rosenfeld, J. A., Reeves, D., Brugler, M. R., Narechania, A., Simon, S., Durrett, R., Foox, J., Shianna, K., Schatz, M. C., Gandara, J., Afshinnekoo, E., Lam, E. T., Hastie, A. R., Chan, S., Cao, H., Saghbini, M., Kentsis, A., Planet, P. J., Kholodovych, V., Tessler, M., Baker, R., DeSalle, R., Sorkin, L. N., Kolokotronis, S. O., Siddall, M. E., Amato, G., Mason, C. E. (February 2016) Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nat Commun, 7. p. 10164. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Saboor, F., Reckmann, A. N., Tomczyk, C. U., Peters, D. M., Weissmann, N., Kaschtanow, A., Schermuly, R. T., Michurina, T. V., Enikolopov, G., Muller, D., Mietens, A., Middendorff, R. (March 2016) Nestin-expressing vascular wall cells drive development of pulmonary hypertension. Eur Respir J, 47 (3). pp. 876-88. ISSN 1399-3003 (Electronic)0903-1936 (Linking)

Sachse, Silke, Beshel, Jennifer (October 2016) The good, the bad, and the hungry: how the central brain codes odor valence to facilitate food approach in Drosophila. Current Opinion in Neurobiology, 40. pp. 53-58. ISSN 0959-4388

Sanders, Joshua I, Hangya, Balázs, Kepecs, Adam (May 2016) Signatures of a Statistical Computation in the Human Sense of Confidence. Neuron, 90 (3). pp. 499-506. ISSN 0896-6273

Schoffski, P., Chawla, S., Maki, R. G., Italiano, A., Gelderblom, H., Choy, E., Grignani, G., Camargo, V., Bauer, S., Rha, S. Y., Blay, J. Y., Hohenberger, P., D'Adamo, D., Guo, M., Chmielowski, B., Le Cesne, A., Demetri, G. D., Patel, S. R. (April 2016) Eribulin versus dacarbazine in previously treated patients with advanced liposarcoma or leiomyosarcoma: a randomised, open-label, multicentre, phase 3 trial. Lancet, 387 (10028). pp. 1629-37. ISSN 0140-6736

Scott, K. L., Powers, S. (August 2016) Functionally Assessing Candidate Drivers Advances Precision Cancer Medicine. Cancer Cell, 30 (2). pp. 187-189. ISSN 1535-6108

Scully, K. M., Skowronska-Krawczyk, D., Krawczyk, M., Merkurjev, D., Taylor, H., Livolsi, A., Tollkuhn, J., Stan, R. V., Rosenfeld, M. G. (November 2016) Epithelial cell integrin beta1 is required for developmental angiogenesis in the pituitary gland. Proc Natl Acad Sci U S A, 113 (47). pp. 13408-13413. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Seely, J. S., Kaufman, M. T., Ryu, S. I., Shenoy, K. V., Cunningham, J. P., Churchland, M. M. (November 2016) Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. PLoS Comput Biol, 12 (11). e1005164. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Seifert, L., Werba, G., Tiwari, S., Giao Ly, N. N., Alothman, S., Alqunaibit, D., Avanzi, A., Barilla, R., Daley, D., Greco, S. H., Torres-Hernandez, A., Pergamo, M., Ochi, A., Zambirinis, C. P., Pansari, M., Rendon, M., Tippens, D., Hundeyin, M., Mani, V. R., Hajdu, C., Engle, D., Miller, G. (April 2016) The necrosome promotes pancreatic oncogenesis via CXCL1 and Mincle-induced immune suppression. Nature, 532 (7598). pp. 245-9. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Serrao, E. M., Kettunen, M. I., Rodrigues, T. B., Dzien, P., Wright, A. J., Gopinathan, A., Gallagher, F. A., Lewis, D. Y., Frese, K. K., Almeida, J., Howat, W. J., Tuveson, D. A., Brindle, K. M. (March 2016) MRI with hyperpolarised [1-13C]pyruvate detects advanced pancreatic preneoplasia prior to invasive disease in a mouse model. Gut, 65 (3). pp. 465-75. ISSN 1468-3288 (Electronic)0017-5749 (Linking)

Sharpee, Tatyana O, Destexhe, Alain, Kawato, Mitsuo, Sekulić, Vladislav, Skinner, Frances K, Wójcik, Daniel K, Chintaluri, Chaitanya, Cserpán, Dorottya, Somogyvári, Zoltán, Kim, Jae Kyoung, Kilpatrick, Zachary P, Bennett, Matthew R, Josić, Kresimir, Elices, Irene, Arroyo, David, Levi, Rafael, Rodriguez, Francisco B, Varona, Pablo, Hwang, Eunjin, Kim, Bowon, Han, Hio-Been, Kim, Tae, McKenna, James T, Brown, Ritchie E, McCarley, Robert W, Choi, Jee Hyun, Rankin, James, Popp, Pamela Osborn, Rinzel, John, Tabas, Alejandro, Rupp, André, Balaguer-Ballester, Emili, Maturana, Matias I, Grayden, David B, Cloherty, Shaun L, Kameneva, Tatiana, Ibbotson, Michael R, Meffin, Hamish, Koren, Veronika, Lochmann, Timm, Dragoi, Valentin, Obermayer, Klaus, Psarrou, Maria, Schilstra, Maria, Davey, Neil, Torben-Nielsen, Benjamin, Steuber, Volker, Ju, Huiwen, Yu, Jiao, Hines, Michael L, Chen, Liang, Yu, Yuguo, Kim, Jimin, Leahy, Will, Shlizerman, Eli, Birgiolas, Justas, Gerkin, Richard C, Crook, Sharon M, Viriyopase, Atthaphon, Memmesheimer, Raoul-Martin, Gielen, Stan, Dabaghian, Yuri, DeVito, Justin, Perotti, Luca, Kim, Anmo J, Fenk, Lisa M, Cheng, Cheng, Maimon, Gaby, Zhao, Chang, Widmer, Yves, Sprecher, Simon, Senn, Walter, Halnes, Geir, Mäki-Marttunen, Tuomo, Keller, Daniel, Pettersen, Klas H, Andreassen, Ole A, Einevoll, Gaute T, Yamada, Yasunori, Steyn-Ross, Moira L, Alistair Steyn-Ross, D, Mejias, Jorge F, Murray, John D, Kennedy, Henry, Wang, Xiao-Jing, Kruscha, Alexandra, Grewe, Jan, Benda, Jan, Lindner, Benjamin, Badel, Laurent, Ohta, Kazumi, Tsuchimoto, Yoshiko, Kazama, Hokto, Kahng, B, Tam, Nicoladie D, Pollonini, Luca, Zouridakis, George, Soh, Jaehyun, Kim, DaeEun, Yoo, Minsu, Palmer, SE, Culmone, Viviana, Bojak, Ingo, Ferrario, Andrea, Merrison-Hort, Robert, Borisyuk, Roman, Kim, Chang Sub, Tezuka, Taro, Joo, Pangyu, Rho, Young-Ah, Burton, Shawn D, Bard Ermentrout, G, Jeong, Jaeseung, Urban, Nathaniel N, Marsalek, Petr, Kim, Hoon-Hee, Moon, Seok-hyun, Lee, Do-won, Lee, Sung-beom, Lee, Ji-yong, Molkov, Yaroslav I, Hamade, Khaldoun, Teka, Wondimu, Barnett, William H, Kim, Taegyo, Markin, Sergey, Rybak, Ilya A, Forro, Csaba, Dermutz, Harald, Demkó, László, Vörös, János, Babichev, Andrey, Huang, Haiping, Verduzco-Flores, Sergio, Dos Santos, Filipa, Andras, Peter, Metzner, Christoph, Schweikard, Achim, Zurowski, Bartosz, Roach, James P, Sander, Leonard M, Zochowski, Michal R, Skilling, Quinton M, Ognjanovski, Nicolette, Aton, Sara J, Zochowski, Michal, Wang, Sheng-Jun, Ouyang, Guang, Guang, Jing, Zhang, Mingsha, Michael Wong, KY, Zhou, Changsong, Robinson, Peter A, Sanz-Leon, Paula, Drysdale, Peter M, Fung, Felix, Abeysuriya, Romesh G, Rennie, Chris J, Zhao, Xuelong, Choe, Yoonsuck, Yang, Huei-Fang, Mi, Yuanyuan, Lin, Xiaohan, Wu, Si, Liedtke, Joscha, Schottdorf, Manuel, Wolf, Fred, Yamamura, Yoriko, Wickens, Jeffery R, Rumbell, Timothy, Ramsey, Julia, Reyes, Amy, Draguljić, Danel, Hof, Patrick R, Luebke, Jennifer, Weaver, Christina M, He, Hu, Yang, Xu, Ma, Hailin, Xu, Zhiheng, Wang, Yuzhe, Baek, Kwangyeol, Morris, Laurel S, Kundu, Prantik, Voon, Valerie, Agnes, Everton J, Vogels, Tim P, Podlaski, William F, Giese, Martin, Kuravi, Pradeep, Vogels, Rufin, Seeholzer, Alexander, Podlaski, William, Ranjan, Rajnish, Vogels, Tim, Torres, Joaquin J, Baroni, Fabiano, Latorre, Roberto, Gips, Bart, Lowet, Eric, Roberts, Mark J, de Weerd, Peter, Jensen, Ole, van der Eerden, Jan, Goodarzinick, Abdorreza, Niry, Mohammad D, Valizadeh, Alireza, Pariz, Aref, Parsi, Shervin S, Warburton, Julia M, Marucci, Lucia, Tamagnini, Francesco, Brown, Jon, Tsaneva-Atanasova, Krasimira, Kleberg, Florence I, Triesch, Jochen, Moezzi, Bahar, Iannella, Nicolangelo, Schaworonkow, Natalie, Plogmacher, Lukas, Goldsworthy, Mitchell R, Hordacre, Brenton, McDonnell, Mark D, Ridding, Michael C, Zapotocky, Martin, Smit, Daniel, Fouquet, Coralie, Trembleau, Alain, Dasgupta, Sakyasingha, Nishikawa, Isao, Aihara, Kazuyuki, Toyoizumi, Taro, Robb, Daniel T, Mellen, Nick, Toporikova, Natalia, Tang, Rongxiang, Tang, Yi-Yuan, Liang, Guangsheng, Kiser, Seth A, Howard, James H, Goncharenko, Julia, Voronenko, Sergej O, Ahamed, Tosif, Stephens, Greg, Yger, Pierre, Lefebvre, Baptiste, Spampinato, Giulia Lia Beatrice, Esposito, Elric, et Olivier Marre, Marcel Stimberg, Choi, Hansol, Song, Min-Ho, Chung, SueYeon, Lee, Dan D, Sompolinsky, Haim, Phillips, Ryan S, Smith, Jeffrey, Chatzikalymniou, Alexandra Pierri, Ferguson, Katie, Alex Cayco Gajic, N, Clopath, Claudia, Angus Silver, R, Gleeson, Padraig, Marin, Boris, Sadeh, Sadra, Quintana, Adrian, Cantarelli, Matteo, Dura-Bernal, Salvador, Lytton, William W, Davison, Andrew, Li, Luozheng, Zhang, Wenhao, Wang, Dahui, Song, Youngjo, Park, Sol, Choi, Ilhwan, Shin, Hee-sup, Choi, Hannah, Pasupathy, Anitha, Shea-Brown, Eric, Huh, Dongsung, Sejnowski, Terrence J, Vogt, Simon M, Kumar, Arvind, Schmidt, Robert, Van Wert, Stephen, Schiff, Steven J, Veale, Richard, Scheutz, Matthias, Lee, Sang Wan, Gallinaro, Júlia, Rotter, Stefan, Rubchinsky, Leonid L, Cheung, Chung Ching, Ratnadurai-Giridharan, Shivakeshavan, Shomali, Safura Rashid, Ahmadabadi, Majid Nili, Shimazaki, Hideaki, Nader Rasuli, S, Zhao, Xiaochen, Rasch, Malte J, Wilting, Jens, Priesemann, Viola, Levina, Anna, Rudelt, Lucas, Lizier, Joseph T, Spinney, Richard E, Rubinov, Mikail, Wibral, Michael, Bak, Ji Hyun, Pillow, Jonathan, Zaho, Yuan, Park, Il Memming, Kang, Jiyoung, Park, Hae-Jeong, Jang, Jaeson, Paik, Se-Bum, Choi, Woochul, Lee, Changju, Song, Min, Lee, Hyeonsu, Park, Youngjin, Yilmaz, Ergin, Baysal, Veli, Ozer, Mahmut, Saska, Daniel, Nowotny, Thomas, Chan, Ho Ka, Diamond, Alan, Herrmann, Christoph S, Murray, Micah M, Ionta, Silvio, Hutt, Axel, Lefebvre, Jérémie, Weidel, Philipp, Duarte, Renato, Morrison, Abigail, Lee, Jung H, Iyer, Ramakrishnan, Mihalas, Stefan, Koch, Christof, Petrovici, Mihai A, Leng, Luziwei, Breitwieser, Oliver, Stöckel, David, Bytschok, Ilja, Martel, Roman, Bill, Johannes, Schemmel, Johannes, Meier, Karlheinz, Esler, Timothy B, Burkitt, Anthony N, Kerr, Robert R, Tahayori, Bahman, Nolte, Max, Reimann, Michael W, Muller, Eilif, Markram, Henry, Parziale, Antonio, Senatore, Rosa, Marcelli, Angelo, Skiker, K, Maouene, M, Neymotin, Samuel A, Seidenstein, Alexandra, Lakatos, Peter, Sanger, Terence D, Menzies, Rosemary J, McLauchlan, Campbell, van Albada, Sacha J, Kedziora, David J, Neymotin, Samuel, Kerr, Cliff C, Suter, Benjamin A, Shepherd, Gordon MG, Ryu, Juhyoung, Lee, Sang-Hun, Lee, Joonwon, Lee, Hyang Jung, Lim, Daeseob, Wang, Jisung, Lee, Heonsoo, Jung, Nam, Anh Quang, Le, Maeng, Seung Eun, Lee, Tae Ho, Lee, Jae Woo, Park, Chang-hyun, Ahn, Sora, Moon, Jangsup, Choi, Yun Seo, Kim, Juhee, Jun, Sang Beom, Lee, Seungjun, Lee, Hyang Woon, Jo, Sumin, Jun, Eunji, Yu, Suin, Goetze, Felix, Lai, Pik-Yin, Kim, Seonghyun, Kwag, Jeehyun, Jang, Hyun Jae, Filipović, Marko, Reig, Ramon, Aertsen, Ad, Silberberg, Gilad, Bachmann, Claudia, Buttler, Simone, Jacobs, Heidi, Dillen, Kim, Fink, Gereon R, Kukolja, Juraj, Kepple, Daniel, Giaffar, Hamza, Rinberg, Dima, Shea, Steven, Koulakov, Alex, Bahuguna, Jyotika, Tetzlaff, Tom, Kotaleski, Jeanette Hellgren, Kunze, Tim, Peterson, Andre, Knösche, Thomas, Kim, Minjung, Kim, Hojeong, Park, Ji Sung, Yeon, Ji Won, Kim, Sung-Phil, Kang, Jae-Hwan, Lee, Chungho, Spiegler, Andreas, Petkoski, Spase, Palva, Matias J, Jirsa, Viktor K, Saggio, Maria L, Siep, Silvan F, Stacey, William C, Bernar, Christophe, Choung, Oh-hyeon, Jeong, Yong, Lee, Yong-il, Kim, Su Hyun, Jeong, Mir, Lee, Jeungmin, Kwon, Jaehyung, Kralik, Jerald D, Jahng, Jaehwan, Hwang, Dong-Uk, Kwon, Jae-Hyung, Park, Sang-Min, Kim, Seongkyun, Kim, Hyoungkyu, Kim, Pyeong Soo, Yoon, Sangsup, Lim, Sewoong, Park, Choongseok, Miller, Thomas, Clements, Katie, Ahn, Sungwoo, Ji, Eoon Hye, Issa, Fadi A, Baek, JeongHun, Oba, Shigeyuki, Yoshimoto, Junichiro, Doya, Kenji, Ishii, Shin, Mosqueiro, Thiago S, Strube-Bloss, Martin F, Smith, Brian, Huerta, Ramon, Hadrava, Michal, Hlinka, Jaroslav, Bos, Hannah, Helias, Moritz, Welzig, Charles M, Harper, Zachary J, Kim, Won Sup, Shin, In-Seob, Baek, Hyeon-Man, Han, Seung Kee, Richter, René, Vitay, Julien, Beuth, Frederick, Hamker, Fred H, Toppin, Kelly, Guo, Yixin, Graham, Bruce P, Kale, Penelope J, Gollo, Leonardo L, Stern, Merav, Abbott, LF, Fedorov, Leonid A, Giese, Martin A, Ardestani, Mohammad Hovaidi, Faraji, Mohammad Javad, Preuschoff, Kerstin, Gerstner, Wulfram, van Gendt, Margriet J, Briaire, Jeroen J, Kalkman, Randy K, Frijns, Johan HM, Lee, Won Hee, Frangou, Sophia, Fulcher, Ben D, Tran, Patricia HP, Fornito, Alex, Gliske, Stephen V, Lim, Eugene, Holman, Katherine A, Fink, Christian G, Kim, Jinseop S, Mu, Shang, Briggman, Kevin L, Sebastian Seung, H, the EyeWirers, Wegener, Detlef, Bohnenkamp, Lisa, Ernst, Udo A, Devor, Anna, Dale, Anders M, Lines, Glenn T, Edwards, Andy, Tveito, Aslak, Hagen, Espen, Senk, Johanna, Diesmann, Markus, Schmidt, Maximilian, Bakker, Rembrandt, Shen, Kelly, Bezgin, Gleb, Hilgetag, Claus-Christian, van Albada, Sacha Jennifer, Sun, Haoqi, Sourina, Olga, Huang, Guang-Bin, Klanner, Felix, Denk, Cornelia, Glomb, Katharina, Ponce-Alvarez, Adrián, Gilson, Matthieu, Ritter, Petra, Deco, Gustavo, Witek, Maria AG, Clarke, Eric F, Hansen, Mads, Wallentin, Mikkel, Kringelbach, Morten L, Vuust, Peter, Klingbeil, Guido, De Schutter, Erik, Chen, Weiliang, Zang, Yunliang, Hong, Sungho, Takashima, Akira, Zamora, Criseida, Gallimore, Andrew R, Goldschmidt, Dennis, Manoonpong, Poramate, Karoly, Philippa J, Freestone, Dean R, Soundry, Daniel, Kuhlmann, Levin, Paninski, Liam, Cook, Mark, Lee, Jaejin, Fishman, Yonatan I, Cohen, Yale E, Roberts, James A, Cocchi, Luca, Sweeney, Yann, Lee, Soohyun, Jung, Woo-Sung, Kim, Youngsoo, Jung, Younginha, Song, Yoon-Kyu, Chavane, Frédéric, Soman, Karthik, Muralidharan, Vignesh, Srinivasa Chakravarthy, V, Shivkumar, Sabyasachi, Mandali, Alekhya, Pragathi Priyadharsini, B, Mehta, Hima, Davey, Catherine E, Brinkman, Braden AW, Kekona, Tyler, Rieke, Fred, Buice, Michael, De Pittà, Maurizio, Berry, Hugues, Brunel, Nicolas, Breakspear, Michael, Marsat, Gary, Drew, Jordan, Chapman, Phillip D, Daly, Kevin C, Bradle, Samual P, Seo, Sat Byul, Su, Jianzhong, Kavalali, Ege T, Blackwell, Justin, Shiau, LieJune, Buhry, Laure, Basnayake, Kanishka, Lee, Sue-Hyun, Levy, Brandon A, Baker, Chris I, Leleu, Timothée, Philips, Ryan T, Chhabria, Karishma (August 2016) 25th Annual Computational Neuroscience Meeting: CNS-2016. In: 25th Annual Computational Neuroscience Meeting: CNS-2016, 2–7 July 2016, Seogwipo City, Jeju-do, South Korea..

Sheltzer, J. (December 2016) Single-chromosome aneuploidy commonly functions as a tumor suppressor. Molecular Biology of the Cell, 27. A10. ISSN 1059-1524

Shemesh, N., Jespersen, S. N., Alexander, D. C., Cohen, Y., Drobnjak, I., Dyrby, T. B., Finsterbusch, J., Koch, M. A., Kuder, T., Laun, F., Lawrenz, M., Lundell, H., Mitra, P. P., Nilsson, M., Ozarslan, E., Topgaard, D., Westin, C. F. (January 2016) Conventions and nomenclature for double diffusion encoding NMR and MRI. Magn Reson Med, 75 (1). pp. 82-87. ISSN 1522-2594 (Electronic)0740-3194 (Linking)

Sheu, Y. J., Kinney, J. B., Stillman, B. (March 2016) Concerted activities of Mcm4, Sld3 and Dbf4 in control of origin activation and DNA replication fork progression. Genome Res, 26 (3). pp. 315-330. ISSN 1549-5469 (Electronic)1088-9051 (Linking) (Public Dataset)

Shi, L., Guo, Y., Dong, C., Huddleston, J., Yang, H., Han, X., Fu, A., Li, Q., Li, N., Gong, S., Lintner, K. E., Ding, Q., Wang, Z., Hu, J., Wang, D., Wang, F., Wang, L., Lyon, G. J., Guan, Y., Shen, Y., Evgrafov, O. V., Knowles, J. A., Thibaud-Nissen, F., Schneider, V., Yu, C. Y., Zhou, L., Eichler, E. E., So, K. F., Wang, K. (June 2016) Long-read sequencing and de novo assembly of a Chinese genome. Nat Commun, 7. p. 12065. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Shirole, N. H., Pal, D., Kastenhuber, E. R., Senturk, S., Boroda, J., Pisterzi, P., Miller, M., Munoz, G., Anderluh, M., Ladanyi, M., Lowe, S. W., Sordella, R. (October 2016) TP53 exon-6 truncating mutations produce separation of function isoforms with pro-tumorigenic functions. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Shuvaev, Sergey A, Başerdem, Batuhan, Zador, Anthony, Koulakov, Alexei A (November 2016) Network cloning using DNA barcodes. arXiv. (Submitted)

Singh, Shashank, Rashid, Sabrina, Long, Zhicheng, Navlakha, Saket, Salman, Hanna, Oltvai, Zoltan, Bar-Joseph, Ziv (April 2016) Distributed Gradient Descent in Bacterial Food Search. Research in Computational Molecular Biology, 9649. ISSN 978-3-319-31957-5

Somerville, Tim D D., Vakoc, Christopher R (July 2016) Modeling the Epigenetic Chain Reaction Downstream of DNMT3A(R882H). Cancer Cell, 30 (1). pp. 9-10. ISSN 1535-6108

Somssich, M., Je, B. I., Simon, R., Jackson, D. (September 2016) CLAVATA-WUSCHEL signaling in the shoot meristem. Development, 143 (18). pp. 3238-48. ISSN 1477-9129 (Electronic)0950-1991 (Linking)

Song, Seung Yeob, Lee, Young Koung, Kim, In-Jung (January 2016) Sugar and acid content of Citrus prediction modeling using FT-IR fingerprinting in combination with multivariate statistical analysis. Food Chemistry, 190. pp. 1027-1032. ISSN 0308-8146

Speck, C., Riera, A., Yuan, Z., Sun, J., Barbon, M., Rappsilber, J., Stillman, B., Li, H. (September 2016) Key mechanism in the loading and activation of the replicative helicase MCM2-7. Febs Journal, 283. p. 12. ISSN 1742-464X

Stanley, P. A., Spiteri, C., Moore, J. C., Barrow, A. S., Sharma, P., Moses, J. E. (January 2016) Biomimetic Approaches Towards The Synthesis of Complex Dimeric Natural Products. Curr Pharm Des, 22 (12). pp. 1628-57. ISSN 1381-6128

Stephenson-Jones, M., Yu, K., Ahrens, S., Tucciarone, J. M., van Huijstee, A. N., Mejia, L. A., Penzo, M. A., Tai, L. H., Wilbrecht, L., Li, B. (November 2016) A basal ganglia circuit for evaluating action outcomes. Nature, 539 (7628). pp. 289-293. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Stillman, Bruce (2016) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Sun, J., Yuan, Z., Stillman, B., Speck, C., Li, H. (2016) Structure and function studies of replication initiation factors. In: The Initiation of DNA Replication in Eukaryotes. Springer, pp. 427-441. ISBN 978-331924696-3978-331924694-9

Tajima, N., Karakas, E., Grant, T., Simorowski, N., Diaz-Avalos, R., Grigorieff, N., Furukawa, H. (May 2016) Activation of NMDA receptors and the mechanism of inhibition by ifenprodil. Nature, 534 (7605). pp. 63-8. ISSN 1476-4687 (Electronic)0028-0836 (Linking) (Public Dataset)

Tasdemir, N., Banito, A., Roe, J. S., Alonso-Curbelo, D., Camiolo, M., Tschaharganeh, D. F., Huang, C. H., Aksoy, O., Bolden, J. E., Chen, C. C., Fennell, M., Thapar, V., Chicas, A., Vakoc, C. R., Lowe, S. W. (June 2016) BRD4 connects enhancer remodeling to senescence immune surveillance. Cancer Discov, 6 (6). pp. 612-629. ISSN 2159-8290 (Electronic)2159-8274 (Linking)

Teijeira, A., Etxeberria, I., Ponz-Sarvise, M., Melero, I. (June 2016) Immunotherapy of Cancer Visualized by Live Microscopy: Seeing Is Believing. Clin Cancer Res. ISSN 1078-0432 (Electronic)1078-0432 (Linking)

Tello-Ruiz, M. K., Stein, J., Wei, S., Preece, J., Olson, A., Naithani, S., Amarasinghe, V., Dharmawardhana, P., Jiao, Y., Mulvaney, J., Kumari, S., Chougule, K., Elser, J., Wang, B., Thomason, J., Bolser, D. M., Kerhornou, A., Walts, B., Fonseca, N. A., Huerta, L., Keays, M., Tang, Y. A., Parkinson, H., Fabregat, A., McKay, S., Weiser, J., D'Eustachio, P., Stein, L., Petryszak, R., Kersey, P. J., Jaiswal, P., Ware, D. (January 2016) Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Res, 44 (D1). D1133-40. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Tello-Ruiz, M. K., Stein, J., Wei, S., Youens-Clark, K., Jaiswal, P., Ware, D. (January 2016) Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways. Methods Mol Biol, 1374. pp. 141-63. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Teng, M., Love, M. I., Davis, C. A., Djebali, S., Dobin, A., Graveley, B. R., Li, S., Mason, C. E., Olson, S., Pervouchine, D., Sloan, C. A., Wei, X., Zhan, L., Irizarry, R. A. (April 2016) A benchmark for RNA-seq quantification pipelines. Genome Biol, 17 (1). p. 74. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Teng, Mingxiang, Love, Michael I, Davis, Carrie A, Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R, Li, Sheng, Mason, Christopher E, Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A, Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A (May 2016) Erratum to: A benchmark for RNA-seq quantification pipelines. Genome Biology, 17 (1). p. 107. ISSN 1465-6906

Tolpygo, Alexander, Lodato, Z, Ferrante, D, Chaudhury, AR, Dardinski, B, Griffin, A, Moses, A, Nair, G, Parikh, G, Perl, DP, Mitra, PP, Latour, L (July 2016) ADVANCES TOWARD 3D HISTOLOGICAL RECONSTRUCTION OF TRAUMATIC VASCULAR INJURY. In: 34th Annual National Neurotrauma Symposium.

Tramantano, M., Sun, L., Au, C., Labuz, D., Liu, Z., Chou, M., Shen, C., Luk, E. (July 2016) Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Turner, Tychele N, Hormozdiari, Fereydoun, Duyzend, Michael H, McClymont, Sarah A, Hook, Paul W, Iossifov, Ivan, Raja, Archana, Baker, Carl, Hoekzema, Kendra, Stessman, Holly A, Zody, Michael C, Nelson, Bradley J, Huddleston, John, Sandstrom, Richard, Smith, Joshua D, Hanna, David, Swanson, James M, Faustman, Elaine M, Bamshad, Michael J, Stamatoyannopoulos, John, Nickerson, Deborah A, McCallion, Andrew S, Darnell, Robert, Eichler, Evan E (January 2016) Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA. The American Journal of Human Genetics, 98 (1). pp. 58-74. ISSN 0002-9297

Tuveson, D. A. (November 2016) Detecting and killing pancreatic cancer. Human Gene Therapy, 27 (11). A12-A12. ISSN 1043-0342

Urano, D., Maruta, N., Trusov, Y., Stoian, R., Wu, Q., Liang, Y., Jaiswal, D. K., Thung, L., Jackson, D., Botella, J. R., Jones, A. M. (September 2016) Saltational evolution of the heterotrimeric G protein signaling mechanisms in the plant kingdom. Sci Signal, 9 (446). ra93. ISSN 1937-9145 (Electronic)1945-0877 (Linking)

Urano, D., Miura, K., Wu, Q., Iwasaki, Y., Jackson, D., Jones, A. M. (March 2016) Plant Morphology of Heterotrimeric G protein Mutants. Plant Cell Physiol, 57 (3). pp. 437-445. ISSN 1471-9053 (Electronic)0032-0781 (Linking)

Urick, Andrew, Hawk, Laura, Cassel, Melissa, Mishra, Neeraj, Kirberger, Steven, Ycas, Peter, Dos Santos, Camila, Pomerantz, William (August 2016) Dual screening using protein-observed fluorine NMR uncovers the first selective inhibitor for BPTF. In: American Chemical Society.

Vareslija, D., McBryan, J., Fagan, A., Redmond, A. M., Hao, Y., Sims, A. H., Turnbull, A. K., Dixon, J. M., P, O. Gaora, Hudson, L., Purcell, S., Hill, A. D., Young, L. (June 2016) Adaptation to AI therapy in breast cancer can induce dynamic alterations in ER activity resulting in estrogen independent metastatic tumours. Clin Cancer Res, 22 (11). pp. 2765-77. ISSN 1078-0432 (Electronic)1078-0432 (Linking)

Vembar, S. S., Seetin, M., Lambert, C., Nattestad, M., Schatz, M. C., Baybayan, P., Scherf, A., Smith, M. L. (August 2016) Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing. DNA Res, 23 (4). pp. 339-351. ISSN 1756-1663 (Electronic)1340-2838 (Linking)

Verleyen, W., Ballouz, S., Gillis, J. (April 2016) Positive and negative forms of replicability in gene network analysis. Bioinformatics, 32 (7). pp. 1065-73. ISSN 1367-4811 (Electronic)1367-4803 (Linking)

Vij, S, Kuhl, H, Kuznetsova, IS, Komissarov, A, Yurchenko, AA, Van Heusden, P, Singh, S, Thevasagayam, NM, Sridatta Prakki, SR, Purushothaman, K, Saju, JM, Jiang, J, Mbandi, SK, Jonas, M, Tong, AHY, Mwangi, S, Lau, D, Ngoh, SY, Liew, WC, Shen, X, Hon, LS, Drake, JP, Boitano, M, Hall, R, Chin, CS, Lachumanan, R, Korlach, J, Trifonov, V, Kabilov, M, Tupikin, A, Green, D, Moxon, S, Garvin, T, Sedlazeck, FJ, Vurture, GW, Gopalapillai, G, Katneni, VK, Noble, TH, Scaria, V, Sivasubbu, S, Jerry, DR, O’Brien, SJ, Schatz, MC, Dalmay, T, Turner, SW, Lok, S, Christoffels, A, Orbán, L (December 2016) Erratum: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PLoS Genetics, 12 (12). e1006500-e1006500. ISSN 1553-7390

Vij, S., Kuhl, H., Kuznetsova, I. S., Komissarov, A., Yurchenko, A. A., Van Heusden, P., Singh, S., Thevasagayam, N. M., Prakki, S. R., Purushothaman, K., Saju, J. M., Jiang, J., Mbandi, S. K., Jonas, M., Hin Yan Tong, A., Mwangi, S., Lau, D., Ngoh, S. Y., Liew, W. C., Shen, X., Hon, L. S., Drake, J. P., Boitano, M., Hall, R., Chin, C. S., Lachumanan, R., Korlach, J., Trifonov, V., Kabilov, M., Tupikin, A., Green, D., Moxon, S., Garvin, T., Sedlazeck, F. J., Vurture, G. W., Gopalapillai, G., Kumar Katneni, V., Noble, T. H., Scaria, V., Sivasubbu, S., Jerry, D. R., O'Brien, S. J., Schatz, M. C., Dalmay, T., Turner, S. W., Lok, S., Christoffels, A., Orban, L. (April 2016) Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PLoS Genet, 12 (4). e1005954. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Vogelstein, Joshua T, Amunts, Katrin, Andreou, Andreas, Angelaki, Dora, Ascoli, Giorgio, Bargmann, Cori, Burns, Randal, Cali, Corrado, Chance, Frances, Chun, Miyoung, Church, George, Cline, Hollis, Coleman, Todd, Rochefoucauld, Stephanie de La, Denk, Winfried, Elgoyhen, Ana Belen, Cummings, Ralph Etienne, Evans, Alan, Harris, Kenneth, Hausser, Michael, Hill, Sean, Inverso, Samuel, Jackson, Chad, Jain, Viren, Kass, Rob, Kasthuri, Bobby, Kiar, Gregory, Kording, Konrad, Koushika, Sandhya, Krakauer, John, Landis, Story, Layton, Jeff, Luo, Qingming, Marblestone, Adam, Markowitz, David, McArthur, Justin, Mensh, Brett, Milham, Michael, Mitra, Partha, Neskovic, Pedja, Nicolelis, Miguel, O'Brien, Richard, Oliva, Aude, Orban, Gergo, Peng, Hanchuan, Picchini-Schaffer, Alyssa, Picciotto, Marina, Poline, Jean-Baptiste, Poo, Mu-ming, Pouget, Alex, Raghavachari, Sri, Roskams, Jane, Sejnowski, Terry, Sommer, Fritz, Spruston, Nelson, Swanson, Larry, Toga, Arthur, Vogelstein, R Jacob, Yuste, Rafael, Zador, Anthony, Huganir, Richard, Miller, Michael (August 2016) Grand Challenges for Global Brain Sciences. arXiv. (Submitted)

Vogt, K., Aso, Y., Hige, T., Knapek, S., Ichinose, T., Friedrich, A. B., Turner, G. C., Rubin, G. M., Tanimoto, H. (April 2016) Direct neural pathways convey distinct visual information to Drosophila mushroom bodies. Elife, 5. ISSN 2050-084X (Electronic)2050-084X (Linking)

Waldemarson, Sofia, Kurbasic, Emila, Krogh, Morten, Cifani, Paolo, Berggård, Tord, Borg, Åke, James, Peter (December 2016) Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples. Breast Cancer Research, 18 (1). ISSN 1465-542X

Wall, N. R., De La Parra, M., Sorokin, J. M., Taniguchi, H., Huang, Z. J., Callaway, E. M. (April 2016) Brain-Wide Maps of Synaptic Input to Cortical Interneurons. J Neurosci, 36 (14). pp. 4000-9. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Wang, B., Tseng, E., Regulski, M., Clark, T. A., Hon, T., Jiao, Y., Lu, Z., Olson, A., Stein, J. C., Ware, D. (June 2016) Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing. Nat Commun, 7. p. 11708. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Wang, L., Van Buren, P., Ware, D. (March 2016) Architecting a distributed bioinformatics platform with iRODS and iPlant agave API. 2015 International Conference on Computational Science and Computational Intelligence (CSCI). pp. 420-423.

Wang, Z., Andrews, P., Kendall, J., Ma, B., Hakker, I., Rodgers, L., Ronemus, M., Wigler, M., Levy, D. (June 2016) SMASH, a fragmentation and sequencing method for genomic copy number analysis. Genome Res, 26 (6). pp. 844-51. ISSN 1549-5469 (Electronic)1088-9051 (Linking) (Public Dataset)

Wang, X., Chen, M., Yu, X., Pornputtapong, N., Chen, H., Zhang, N., Powers, S., Krauthammer, M. (March 2016) Global copy number profiling of cancer genomes. Bioinformatics, 32 (6). pp. 926-928. ISSN 1367-4803

Wei, Y., Gokhale, R. H., Sonnenschein, A., Montgomery, K. M., Ingersoll, A., Arnosti, D. N. (October 2016) Complex cis-regulatory landscape of the insulin receptor gene underlies the broad expression of a central signaling regulator. Development, 143 (19). pp. 3591-3603. ISSN 0950-1991

Witkowski, Jan (February 2016) Darwin’s Favorite Journal. Cell.

Wu, S., Powers, S., Zhu, W., Hannun, Y. A. (January 2016) Substantial contribution of extrinsic risk factors to cancer development. Nature, 529 (7584). pp. 43-7. ISSN 0028-0836

Xu, C., Park, S. J., Van Eck, J., Lippman, Z. B. (September 2016) Control of inflorescence architecture in tomato by BTB/POZ transcriptional regulators. Genes Dev, 30 (18). pp. 2048-2061. ISSN 0890-9369 (Print)0890-9369 (Linking)

Yang, C. H., Shih, M. F., Chang, C. C., Chiang, M. H., Shih, H. W., Tsai, Y. L., Chiang, A. S., Fu, T. F., Wu, C. L. (May 2016) Additive Expression of Consolidated Memory through Drosophila Mushroom Body Subsets. PLoS Genet, 12 (5). e1006061. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Yu, A. T., Bergmann, J. H., Berasain, C., Rigo, F., Spector, D. L. (December 2016) Probing the Role of a Highly Expressed Long Non-Coding RNA in Hepatocellular Carcinoma. Molecular Biology of the Cell, 27. Abstract P343. ISSN 1059-15241939-4586

Yu, K., Garcia da Silva, P., Albeanu, D. F., Li, B. (June 2016) Central Amygdala Somatostatin Neurons Gate Passive and Active Defensive Behaviors. J Neurosci, 36 (24). pp. 6488-96. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Zai, G., Alberry, B., Arloth, J., Banlaki, Z., Bares, C., Boot, E., Camilo, C., Chadha, K., Chen, Q., Cole, C. B., Cost, K. T., Crow, M., Ekpor, I., Fischer, S. B., Flatau, L., Gagliano, S., Kirli, U., Kukshal, P., Labrie, V., Lang, M., Lett, T. A., Maffioletti, E., Maier, R., Mihaljevic, M., Mittal, K., Monson, E. T., O'Brien, N. L., Ostergaard, S. D., Ovenden, E., Patel, S., Peterson, R. E., Pouget, J. G., Rovaris, D. L., Seaman, L., Shankarappa, B., Tsetsos, F., Vereczkei, A., Wang, C., Xulu, K., Yuen, R. K., Zhao, J., Zai, C. C., Kennedy, J. L. (September 2016) Rapporteur summaries of plenary, symposia, and oral sessions from the XXIIIrd World Congress of Psychiatric Genetics Meeting in Toronto, Canada, 16-20 October 2015. Psychiatr Genet. ISSN 1473-5873 (Electronic)0955-8829 (Linking)

Zai, G., Alberry, B., Arloth, J., Banlaki, Z., Bares, C., Boot, E., Camilo, C., Chadha, K., Chen, Q., Cole, C. B., Cost, K. T., Crow, M., Ekpor, I., Fischer, S. B., Flatau, L., Gagliano, S., Kirli, U., Kukshal, P., Labrie, V., Lang, M., Lett, T. A., Maffioletti, E., Maier, R., Mihaljevic, M., Mittal, K., Monson, E. T., O'Brien, N. L., Ostergaard, S. D., Ovenden, E., Patel, S., Peterson, R. E., Pouget, J. G., Rovaris, D. L., Seaman, L., Shankarappa, B., Tsetsos, F., Vereczkei, A., Wang, C., Xulu, K., Yuen, R. K., Zhao, J., Zai, C. C., Kennedy, J. L. (December 2016) Rapporteur summaries of plenary, symposia, and oral sessions from the XXIIIrd World Congress of Psychiatric Genetics Meeting in Toronto, Canada, 16-20 October 2015. Psychiatr Genet, 26 (6). pp. 229-257. ISSN 1473-5873 (Electronic)0955-8829 (Linking)

Zalabák, David, Johnová, Patricie, Plíhal, Ondřej, Šenková, Karolina, Šamajová, Olga, Jiskrová, Eva, Novák, Ondřej, Jackson, David, Mohanty, Amitabh, Galuszka, Petr (March 2016) Maize cytokinin dehydrogenase isozymes are predominantly localized to the vacuole. Plant Physiology and Biochemistry, 104. pp. 114-124. ISSN 0981-9428

Zhang, Qiang, Zeng, Lei, Shen, Chen, Ju, Ying, Konuma, Tsuyoshi, Zhao, Chengcheng, Vakoc, Christopher R, Zhou, Ming-Ming (June 2016) Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4. Structure. ISSN 0969-2126

Zhang, T., Romanel, A., Kluk, M. J., Eng, K., Iossifov, I., Sboner, A., Lipkin, S., Pritchard, C., Beltran, H., Rubin, M., Demichelis, F., Elemento, O. (February 2016) Germline Variants and Secondary Findings in a Cancer Precision Medicine Cohort. Laboratory Investigation, 96. 461A-461A. ISSN 0023-6837

Zhang, E., Tang, J., Li, S., Wu, P., Moses, J. E., Sharpless, K. B. (April 2016) Chemoselective Synthesis of Polysubstituted Pyridines from Heteroaryl Fluorosulfates. Chemistry, 22 (16). pp. 5692-7. ISSN 0947-6539 (Print)0947-6539

Zhao, Y., Schreiner, S. M., Koo, P. K., Colombi, P., King, M. C., Mochrie, S. G. (July 2016) Improved Determination of Subnuclear Position Enabled by Three-Dimensional Membrane Reconstruction. Biophys J, 111 (1). pp. 19-24. ISSN 0006-3495

Zhu, J., Peng, T., Chang, Y., Layton, E., Sun, S. J., Phasouk, K., Johnston, C., Halford, W. P., Wald, A., Corey, L. (May 2016) Tissue resident memory CD8 T cells augment innate immunity for tissue-wide antiviral protection. Journal of Immunology, 196 (Supple). 148.7. ISSN 0022-17671550-6606

Öhlund, Daniel, Handly-Santana, Abram, Elyada, Ela, Biffi, Giulia, Tuveson, David A. (June 2016) Pancreatic stellate cell heterogeneity in cancer. Pancreatology, 16 (3, Sup). S15. ISSN 1424-3903