Items where Year is 2008

Paper

Agaram, N. P., Laquaglia, M. P., Ustun, B., Guo, T., Wong, G. C., Socci, N. D., Maki, R. G., DeMatteo, R. P., Besmer, P., Antonescu, C. R. (May 2008) Molecular characterization of pediatric gastrointestinal stromal tumors. Clin Cancer Res, 14 (10). pp. 3204-15. ISSN 1078-0432 (Print)1078-0432 (Linking)

Agaram, N. P., Wong, G. C., Guo, T., Maki, R. G., Singer, S., Dematteo, R. P., Besmer, P., Antonescu, C. R. (October 2008) Novel V600E BRAF mutations in imatinib-naive and imatinib-resistant gastrointestinal stromal tumors. Genes Chromosomes Cancer, 47 (10). pp. 853-9. ISSN 1098-2264 (Electronic)1045-2257 (Linking)

Aguirre, W. E., Ellis, K. E., Kusenda, M., Bell, M. A. (November 2008) Phenotypic variation and sexual dimorphism in anadromous threespine stickleback: Implications for postglacial adaptive radiation. Biological Journal of the Linnean Society, 95 (3). pp. 465-478.

Alarcon, M., Abrahams, B. S., Stone, J. L., Duvall, J. A., Perederiy, J. V., Bomar, J. M., Sebat, J., Wigler, M. H., Martin, C. L., Ledbetter, D. H., Nelson, S. F., Cantor, R. M., Geschwind, D. H. (January 2008) Linkage, Association, and Gene-Expression Analyses Identify CNTNAP2 as an Autism-Susceptibility Gene. Am J Hum Genet, 82 (1). pp. 150-159.

Albeanu, D. F., Soucy, E., Sato, T. F., Meister, M., Murthy, V. N. (2008) LED arrays as cost effective and efficient light sources for widefield microscopy. PLoS ONE, 3 (5). ISSN 19326203 (ISSN)

Alia-Klein, N., Goldstein, R. Z., Kriplani, A., Logan, J., Tomasi, D., Williams, B., Telang, F., Shumay, E., Biegon, A., Craig, I. W., Henn, F., Wang, G. J., Volkow, N. D., Fowler, J. S. (May 2008) Brain monoamine oxidase A activity predicts trait aggression. J Neurosci, 28 (19). pp. 5099-104. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Ango, F., Wu, C., Van der Want, J. J., Wu, P., Schachner, M., Huang, Z. J. (April 2008) Bergmann Glia and the Recognition Molecule CHL1 Organize GABAergic Axons and Direct Innervation of Purkinje Cell Dendrites. PLoS Biology, 6 (4). e103.

Aranda, V., Nolan, M. E., Muthuswamy, S. K. (November 2008) Par complex in cancer: a regulator of normal cell polarity joins the dark side. Oncogene, 27 (55). pp. 6878-87.

Aravin, A. A., Bourc'his, D. (April 2008) Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes Dev, 22 (8). pp. 970-5.

Aravin, A. A., Hannon, G. J. (2008) Small RNA silencing pathways in germ and stem cells. Cold Spring Harb Symp Quant Biol, 73. pp. 283-90. ISSN 1943-4456 (Electronic)0091-7451 (Linking)

Aravin, A. A., Sachidanandam, R., Bourc'his, D., Schaefer, C., Pezic, D., Toth, K. F., Bestor, T., Hannon, G. J. (2008) A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice. Molecular Cell, 31 (6). pp. 785-799. ISSN 10972765 (ISSN)

Atwal, G. S., Rabadan, R., Lozano, G., Strong, L. C., Ruijs, M. W., Schmidt, M. K., van't Veer, L. J., Nevanlinna, H., Tommiska, J., Aittomaki, K., Bougeard, G., Frebourg, T., Levine, A. J., Bond, G. L. (April 2008) An information-theoretic analysis of genetics, gender and age in cancer patients. PLoS ONE, 3 (4). e1951. ISSN 1932-6203 (Electronic)

Avraham, S., Tung, C. W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L. D., Stevens, P., Vincent, L., Zapata, F., Ware, D. H. (January 2008) The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res, 36 (Databa). D449-54.

Bagchi, A., Mills, A. A. (April 2008) The quest for the 1p36 tumor suppressor. Cancer Res, 68 (8). pp. 2551-6.

Bamieh, B., Jovanovic, M., Mitra, P. P., Patterson, S. (2008) Effect of topological dimension on rigidity of vehicle formations: Fundamental limitations of local feedback. IEEE Conference on Decision and Control. pp. 369-374.

Bartley, A. F., Huang, Z. J., Huber, K. M., Gibson, J. R. (October 2008) Differential Activity-Dependent, Homeostatic Plasticity of Two Neocortical Inhibitory Circuits. J Neurophysiol, 100 (4). pp. 1983-1994.

Baumbusch, L. O., Aaroe, J., Johansen, F. E., Hicks, J. B., Sun, H., Bruhn, L., Gunderson, K., Naume, B., Kristensen, V. N., Liestol, K., Borresen-Dale, A. L., Lingjaerde, O. C. (August 2008) Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors. BMC Genomics, 9. p. 379.

Beck, J. M., Ma, W. J., Kiani, R., Hanks, T., Churchland, A. K., Roitman, J., Shadlen, M. N., Latham, P. E., Pouget, A. (2008) Probabilistic Population Codes for Bayesian Decision Making. Neuron, 60 (6). pp. 1142-1152. ISSN 08966273 (ISSN)

Bell, D. W., Brannigan, B. W., Matsuo, K., Finkelstein, D. M., Sordella, R., Settleman, J., Mitsudomi, T., Haber, D. A. (July 2008) Increased prevalence of EGFR-mutant lung cancer in women and in East Asian populations: analysis of estrogen-related polymorphisms. Clinical Cancer Research, 14 (13). pp. 4079-84. ISSN 1078-0432

Bemer, M., Wolters-Arts, M., Grossniklaus, U., Angenent, G. C. (August 2008) The MADS Domain Protein DIANA Acts Together with AGAMOUS-LIKE80 to Specify the Central Cell in Arabidopsis Ovules. Plant Cell, 20 (8). pp. 2088-2101.

Benetti, R., Gonzalo, S., Jaco, I., Munoz, P., Gonzalez, S., Schoeftner, S., Murchison, E. P., Andl, T., Chen, T. P., Klatt, P., Li, E., Serrano, M., Millar, S., Hannon, G. J., Blasco, M. A. (March 2008) A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferases. Nature Structural & Molecular Biology, 15 (3). pp. 268-279. ISSN 1545-998515459993 (ISSN)

Berger, K. H., Kong, E. C., Dubnau, J. T., Tully, T., Moore, M. S., Heberlein, U. (May 2008) Ethanol sensitivity and tolerance in long-term memory mutants of Drosophila melanogaster. Alcoholism-Clinical and Experimental Research, 32 (5). pp. 895-908. ISSN 0145-6008

Bestman, J. E., Cline, H. T. (December 2008) The RNA binding protein CPEB regulates dendrite morphogenesis and neuronal circuit assembly in vivo. Proc Natl Acad Sci U S A, 105 (51). 20494-20499 .

Bish, R. A., Fregoso, O. I., Piccini, A., Myers, M. P. (August 2008) Conjugation of Complex Polyubiquitin Chains to WRNIP1. J Proteome Res, 7 (8). 3481-3489 .

Blanke, C. D., Rankin, C., Demetri, G. D., Ryan, C. W., von Mehren, M., Benjamin, R. S., Raymond, A. K., Bramwell, V. H., Baker, L. H., Maki, R. G., Tanaka, M., Hecht, J. R., Heinrich, M. C., Fletcher, C. D., Crowley, J. J., Borden, E. C. (February 2008) Phase III randomized, intergroup trial assessing imatinib mesylate at two dose levels in patients with unresectable or metastatic gastrointestinal stromal tumors expressing the kit receptor tyrosine kinase: S0033. J Clin Oncol, 26 (4). pp. 626-32. ISSN 1527-7755 (Electronic)0732-183X (Linking)

Boivin, B., Vaniotis, G., Allen, B. G., Hebert, T. E. (January 2008) G protein-coupled receptors in and on the cell nucleus: a new signaling paradigm? J Recept Signal Transduct Res, 28 (1-2). pp. 15-28.

Boivin, B., Zhang, S. H., Arbiser, J. L., Zhang, Z.-Y., Tonks, N. K. (July 2008) A modified cysteinyl-labeling assay reveals reversible oxidation of classical and dual specificity phosphatases in angiomyolipoma cells. Proc Natl Acad Sci U S A, 105 (29). pp. 9959-9964.

Bolduc, F. V., Bell, K. G., Cox, H., Broadie, K. S., Tully, T. (October 2008) Excess protein synthesis in Drosophila Fragile X mutants impairs long-term memory. Nat Neurosci, 11 (10). 1143 - 1145 .

Bolduc, N., Hake, S., Jackson, D. (2008) Dual functions of the KNOTTED1 homeodomain: sequence-specific DNA binding and regulation of cell-to-cell transport. Science Signaling, 1 (23). pe28.

Bordeleau, M. E., Robert, F., Gerard, B., Lindqvist, L., Chen, S. M., Wendel, H. G., Brem, B., Greger, H., Lowe, S. W., Porco, J. A., Pelletier, J. (July 2008) Therapeutic suppression of translation initiation modulates chemosensitivity in a mouse lymphoma model. J Clin Invest, 118 (7). 2651- 2660.

Brennecke, J., Malone, C. D., Aravin, A. A., Sachidanandam, R., Stark, A., Hannon, G. J. (November 2008) An epigenetic role for maternally inherited piRNAs in transposon silencing. Science, 322 (5906). pp. 1387-92.

Broser, P., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (July 2008) Critical period plasticity of axonal arbors of layer 2/3 pyramidal neurons in rat somatosensory cortex: layer-specific reduction of projections into deprived cortical columns. Cerebral Cortex, 18 (7). pp. 1588-603. ISSN 1047-3211

Broser, P. J., Erdogan, S., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (March 2008) Automated axon length quantification for populations of labelled neurons. Journal of Neuroscience Methods, 169 (1). pp. 43-54. ISSN 0165-0270

Bureau, I., Shepherd, G. M., Svoboda, K. (May 2008) Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice. J Neurosci, 28 (20). pp. 5178-88.

Burgess, D. J., Doles, J., Zender, L., Xue, W., Ma, B., McCombie, W. R., Hannon, G. J., Lowe, S. W., Hemann, M. T. (July 2008) Topoisomerase levels determine chemotherapy response in vitro and in vivo. Proc Natl Acad Sci U S A, 105 (25). pp. 9053-9058.

Burgess, R., Yang, Z. (September 2008) Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors. Molecular Biology and Evolution, 25 (9). pp. 1979-1994. ISSN 0737-4038

Canaran, P., Buckler, E. S., Glaubitz, J. C., Stein, L. D., Sun, Q., Zhao, W., Ware, D. H. (2008) Panzea: an update on new content and features. Nucleic Acids Res, 36 (Databa). D1041-3.

Cantallops, I., Cline, H. T. (May 2008) Rapid activity-dependent delivery of the neurotrophic protein CPG15 to the axon surface of neurons in intact Xenopus tadpoles. Dev Neurobiol, 68 (6). pp. 744-759.

Canter, R. J., Qin, L. X., Ferrone, C. R., Maki, R. G., Singer, S., Brennan, M. F. (December 2008) Why do patients with low-grade soft tissue sarcoma die? Ann Surg Oncol, 15 (12). pp. 3550-60. ISSN 1534-4681 (Electronic)1068-9265 (Linking)

Canter, R. J., Qin, L. X., Maki, R. G., Brennan, M. F., Ladanyi, M., Singer, S. (December 2008) A synovial sarcoma-specific preoperative nomogram supports a survival benefit to ifosfamide-based chemotherapy and improves risk stratification for patients. Clin Cancer Res, 14 (24). pp. 8191-7. ISSN 1078-0432 (Print)1078-0432 (Linking)

Capellini, T. D., Dunn, M. P., Passamaneck, Y. J., Selleri, L., Di Gregorio, A. (November 2008) Conservation of notochord gene expression across chordates: insights from the Leprecan gene family. Genesis, 46 (11). pp. 683-96. ISSN 1526-954x

Castle, J. C., Zhang, C., Shah, J. K., Kulkarni, A.t V., Kalsotra, A., Cooper, T. A., Johnson, J. M. (2008) Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines. Nat Genet, 40 (12). pp. 1416-1425.

Chen, G., Li, W., Zhang, Q. S. , Regulski, M. R., Sinha, N., Barditch, J., Tully, T. , Krainer, A. R., Zhang, M. Q., Dubnau, J. T. (February 2008) Identification of Synaptic Targets of Drosophila Pumilio. PLoS Computational Biology, 4 (2). e1000026. ISSN 1553734X

Chen, J., Kim, Y. C., Jung, Y. C., Xuan, Z. Y., Dworkin, G., Zhang, Y. M., Zhang, M. Q., Wang, S. M. (2008) Scanning the human genome at kilobase resolution. Genome Res, 18 (5). pp. 751-762. ISSN 1088-9051

Chen, J. F., Murchison, E. P., Tang, R., Callis, T. E., Tatsuguchi, M., Deng, Z., Rojas, M., Hammond, S. M., Schneider, M. D., Selzman, C. H., Meissner, G., Patterson, C., Hannon, G. J., Wang, D. Z. (February 2008) Targeted deletion of Dicer in the heart leads to dilated cardiomyopathy and heart failure. Proc Natl Acad Sci U S A, 105 (6). pp. 2111-2116. ISSN 0027-8424

Chen, S., Auletta, T., Dovirak, O., Hutter, C., Kuntz, K., El-Ftesi, S., Kendall, J., Han, H., Von Hoff, D. D., Ashfaq, R., Maitra, A., Iacobuzio-Donahue, C. A., Hruban, R. H., Lucito, R. (November 2008) Copy number alterations in pancreatic cancer identify recurrent PAK4 amplification. Cancer Biol Ther, 7 (11). pp. 1793-1802.

Chen, Y. C. M., Kappel, C., Beaudouin, J., Eils, R., Spector, D. L. (July 2008) Live Cell Dynamics of PML Nuclear Bodies upon Entry into and Exit from Mitosis. Molecular Biology of the Cell, 19 (7). pp. 3147-3162. ISSN 1059-1524

Chen, Z. Q., Speck, C., Wendel, P., Tang, C. Y., Stillman, B., Lill, H. L. (July 2008) The architecture of the DNA replication origin recognition complex in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America, 105 (30). pp. 10326-10331. ISSN 0027-8424

Chien, Y., Lowe, S. W. (2008) Secreting tumor suppression. Cell, 132 (3). pp. 339-41. ISSN 0092-8674

Chitwood, D. H., Nogueira, F. T., Howell, M. D., Montogmery, T. A., Carrington, J. C., Timmermans, M. C. (2008) Pattern formation in leaves via small RNA mobility. Developmental Biology, 319 (2). pp. 587-588. ISSN 0012-1606

Chiu, S. L., Chen, C. M., Cline, H. T. (June 2008) Insulin receptor signaling regulates synapse number, dendritic plasticity, and circuit function in vivo. Neuron, 58 (5). pp. 708-719.

Churchland, A. K., Kiani, R., Shadlen, M. N. (2008) Decision-making with multiple alternatives. Nature Neuroscience, 11 (6). pp. 693-702. ISSN 10976256 (ISSN)

Cline, H. (2008) Experience and brain development. Biological Psychiatry, 63 (7). 222S-222S. ISSN 0006-3223

Cline, H. T., Haas, K. (March 2008) The regulation of dendritic arbor development and plasticity by glutamatergic synaptic input: a review of the synaptotrophic hypothesis. J Physiol, 586 (6). pp. 1509-1517.

Coghlan, A., Fiedler, T. J., McKay, S. J., Flicek, P., Harris, T. W., Blasiar, D., Stein, L. D. (2008) nGASP - the nematode genome annotation assessment project. Bmc Bioinformatics, 9 (1). p. 549.

Czech, B., Malone, C. D., Zhou, R., Stark, A., Schlingeheyde, C., Dus, M., Perrimon, N., Kellis, M., Wohlschlegel, J. A., Sachidanandam, R., Hannon, G. J., Brennecke, J. (2008) An endogenous small interfering RNA pathway in Drosophila. Nature, 453 (7196). pp. 798-802. ISSN 0028-0836

Daulny, A., Geng, F., Muratani, M., Geisinger, J. M., Salghetti, S. E., Tansey, W. P. (2008) Modulation of RNA polymerase II subunit composition by ubiquitylation. Proc Natl Acad Sci U S A, 105 (50). 19649-19654 .

De Pietri Tonelli, D., Pulvers, J. N., Haffner, C., Murchison, E. P., Hannon, G. J., Huttner, W. B. (2008) miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex. Development, 135 (23). pp. 3911-3921. ISSN 09501991 (ISSN)

Degenhardt, Y. Y., Wooster, R., McCombie, R. W., Lucito, R., Powers, S. (February 2008) High-content analysis of cancer genome DNA alterations. Current Opinion in Genetics & Development, 18 (1). pp. 68-72.

Dematteo, R. P., Gold, J. S., Saran, L., Gonen, M., Liau, K. H., Maki, R. G., Singer, S., Besmer, P., Brennan, M. F., Antonescu, C. R. (February 2008) Tumor mitotic rate, size, and location independently predict recurrence after resection of primary gastrointestinal stromal tumor (GIST). Cancer, 112 (3). pp. 608-15. ISSN 0008-543X (Print)0008-543X (Linking)

Desjardins, C. A., Gundersen-Rindal, D. E., Hostetler, J. B., Tallon, L. J., Fadrosh, D. W., Fuester, R. W., Pedroni, M. J., Haas, B. J., Schatz, M. C., Jones, K. M., Crabtree, J., Forberger, H., Nene, V. (2008) Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps. Genome Biology, 9 (12). ISSN 14656914 (ISSN)

Dickler, Maura N, Rugo, Hope S, Eberle, Carey A, Brogi, Edi, Caravelli, James F, Panageas, Katherine S, Boyd, Jeff, Yeh, Benjamin, Lake, Diana E, Dang, Chau T, Gilewski, Teresa A, Bromberg, Jacqueline F, Seidman, Andrew D, D'Andrea, Gabriella M, Moasser, Mark M, Melisko, Michele, Park, John W, Dancey, Janet, Norton, Larry, Hudis, Clifford A (December 2008) A phase II trial of erlotinib in combination with bevacizumab in patients with metastatic breast cancer. Clinical Cancer Research, 14 (23). pp. 7878-7883. ISSN 1078-0432

Dimitrova, N., Chen, Y. C. M., Spector, D. L., de Lange, T. (November 2008) 53BP1 promotes non-homologous end joining of telomeres by increasing chromatin mobility. Nature, 456 (7221). pp. 524-528.

Djebali, S., Kapranov, P., Foissac, S., Lagarde, J., Reymond, A., Ucla, C., Wyss, C., Drenkow, J., Dumais, E., Murray, R. R., Lin, C., Szeto, D., Denoeud, F., Calvo, M., Frankish, A., Harrow, J., Makrythanasis, P., Vidal, M., Salehi-Ashtiani, K., Antonarakis, S. E., Gingeras, T. R., Guigo, R. (2008) Efficient targeted transcript discovery via array-based normalization of RACE libraries. Nature Methods, 5 (7). pp. 629-35. ISSN 15487091 (ISSN) (Public Dataset)

Djuric, P. M., Benveniste, H., Wagshul, M. E., Henn, F., Enikolopov, G., Maletic-Savatic, M. (2008) Response to comments on "magnetic resonance spectroscopy identifies neural progenitor cells in the live human brain". Science, 321 (5889). p. 640. ISSN 0036-8075

Dow, L. E., Elsum, I. A., King, C. L., Kinross, K. M., Richardson, H. E., Humbert, P. O. (2008) Loss of human Scribble cooperates with H-Ras to promote cell invasion through deregulation of MAPK signalling. Oncogene, 27 (46). pp. 5988-6001.

Drilon, A. D., Popat, S., Bhuchar, G., D'Adamo, D. R., Keohan, M. L., Fisher, C., Antonescu, C. R., Singer, S., Brennan, M. F., Judson, I., Maki, R. G. (December 2008) Extraskeletal myxoid chondrosarcoma: a retrospective review from 2 referral centers emphasizing long-term outcomes with surgery and chemotherapy. Cancer, 113 (12). pp. 3364-71. ISSN 0008-543X (Print)0008-543X (Linking)

Du, J., Jablonski, S., Yen, T. J., Hannon, G. J. (2008) Astrin regulates Aurora-A localization. Biochem Biophys Res Commun, 370 (2). pp. 213-9.

Eade, S. J., Walter, M. W., Byrne, C., Odell, B., Rodriguez, R., Baldwin, J. E., Adlington, R. M., Moses, J. E. (July 2008) Biomimetic synthesis of pyrone-derived natural products: exploring chemical pathways from a unique polyketide precursor. J Org Chem, 73 (13). pp. 4830-9. ISSN 0022-3263

Efroni, S., Duttagupta, R., Cheng, J., Dehghani, H., Hoeppner, D. J., Dash, C., Bazett-Jones, D. P., Le Grice, S., McKay, R. D. G., Buetow, K. H., Gingeras, T. R., Misteli, T., Meshorer, E. (2008) Global Transcription in Pluripotent Embryonic Stem Cells. Cell Stem Cell, 2 (5). pp. 437-447. ISSN 19345909 (ISSN) (Public Dataset)

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy. Disease Models and Mechanisms, 1 (2-3). pp. 155-167. ISSN 17548403 (ISSN)

Eguchi, J., Yan, Q. W., Schones, D. E., Karnal, M., Hsu, C. H., Zhang, M. Q., Crawford, G. E., Rosen, E. D. (2008) Interferon regulatory factors are transcriptional regulators of adipogenesis. Cell Metabolism, 7 (1). pp. 86-94. ISSN 1550-4131

Eisch, A. J., Cameron, H. A., Encinas, J. M., Meltzer, L. A., Ming, G. L., Overstreet-Wadiche, L. S. (2008) Adult neurogenesis, mental health, and mental illness: hope or hype? J Neurosci, 28 (46). pp. 11785-91.

Encinas, J. M., Enikolopov, G. (2008) Identifying and quantitating neural stem and progenitor cells in the adult brain. Methods Cell Biol, 85. pp. 243-72. ISSN 0091-679X (Print) (Unpublished)

Encinas, Juan M., Vazquez, Marcelo E., Switzer, Robert C., Chamberland, Dennis W., Nick, Harry, Levine, Howard G., Scarpa, Philip J., Enikolopov, Grigori, Steindler, Dennis A. (2008) Quiescent adult neural stem cells are exceptionally sensitive to cosmic radiation. Experimental Neurology, 210 (1). 274-279 . ISSN 1090-2430 (Electronic) 1090-2430 (Linking)

Enemark, E. J., Joshua-Tor, L. (April 2008) On helicases and other motor proteins. Curr Opin Struct Biol, 18 (2). 243-257 .

Engel, T. A., Schimansky-Geier, L., Herz, A. V., Schreiber, S., Erchova, I. (September 2008) Subthreshold membrane-potential resonances shape spike-train patterns in the entorhinal cortex. J Neurophysiol, 100 (3). pp. 1576-89. ISSN 0022-3077 (Print)0022-3077 (Linking)

Erlich, Y., Mitra, P. P., Delabastide, M., McCombie, W. R., Hannon, G. J. (August 2008) Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nature Methods, 5 (8). 679 - 682.

Ewald, R. C., Van Keuren-Jensen, K. R., Aizenman, C. D., Cline, H. T. (January 2008) Roles of NR2A and NR2B in the development of dendritic arbor morphology in vivo. J Neurosci, 28 (4). pp. 850-861.

Fan, S., Zhang, M. Q., Zhang, X. (2008) Histone methylation marks play important roles in predicting the methylation status of CpG islands. Biochemical and Biophysical Research Communications, 374 (3). pp. 559-564. ISSN 0006291X

Fanta, S., Sonnenberg, M., Skorta, I., Duyster, J., Miething, C., Aulitzky, W. E., van der Kuip, H. (July 2008) Pharmacological inhibition of c-Abl compromises genetic stability and DNA repair in Bcr-Abl-negative cells. Oncogene, 27 (31). pp. 4380-4384. ISSN 0950-9232

Farrar, J. E., Nater, M., Caywood, E., McDevitt, M. A., Kowalski, J., Takemoto, C. M., Talbot, C. C., Meltzer, P., Esposito, D., Beggs, A. H., Schneider, H. E., Grabowska, A., Ball, S. E., Niewiadomska, E., Sieff, C. A., Vlachos, A., Atsidaftos, E., Ellis, S. R., Lipton, J. M., Gazda, H. T., Areci, R. J. (September 2008) Abnormalities of the large ribosomal subunit protein, Rp135a, in Diamond-Blackfan anemia. Blood, 112 (5). pp. 1582-1592. ISSN 0006-4971

Feigin, M. E., Malbon, C. C. (2008) OSTM1 regulates beta-catenin/Lef1 interaction and is required for Wnt/beta-catenin signaling. Cell Signal, 20 (5). 949-957 .

Feigin, M. E., Muthuswamy, S. K. (February 2008) ErbB receptors and cell polarity: New pathways and paradigms for understanding cell migration and invasion. Experimental Cell Research, 315 (4). pp. 707-716. ISSN 0014-4827

Felsen, G., Mainen, Z. F. (October 2008) Neural substrates of sensory-guided locomotor decisions in the rat superior colliculus. Neuron, 60 (1). pp. 137-48.

Fendt, M., Lex, A., Falkai, P., Henn, F. A., Schmitt, A. (July 2008) Behavioural alterations in rats following neonatal hypoxia and effects of clozapine: implications for schizophrenia. Pharmacopsychiatry, 41 (4). pp. 138-45. ISSN 0176-3679 (Print)0176-3679 (Linking)

Finigan, P., Martienssen, R. A. (December 2008) Nucleolar dominance and DNA methylation directed by small interfering RNA. Molecular Cell, 32 (6). pp. 753-4. ISSN 1097-2765

Fu, B., Luo, M., Lakkur, S., Lucito, R., Iacobuzio-Donahue, C. A. (October 2008) Frequent genomic copy number gain and overexpression of GATA-6 in pancreatic carcinoma. Cancer Biol Ther, 7 (10). pp. 1593-601.

Fujimitsu, K., Su'etsugu, M., Yamaguchi, Y., Mazda, K., Fu, Nisi, Kawakami, H., Katayama, T. (August 2008) Modes of Overinitiation, dnaA Gene Expression, and Inhibition of Cell Division in a Novel Cold-Sensitive hda Mutant of Escherichia coli. J. Bacteriol., 190 (15). pp. 5368-5381.

Fuller, R. S., Bambara, R. A., Baker, T., Funnell, B., Wahle, E., O'Donnell, M., Kaiser, D., Skarstad, K., Konforti, B., Maki, S., Katayama, T., Sekimizu, K., Weiner, J. H., Davis, R. W., Rowen, L., Goodman, M. F., Spudich, J., Pfeffer, S., Richardson, C. C., Polaczek, P., Calendar, R., Kolodner, R., Griffith, J., Stillman, B., Modrich, P., Brenner, C., Yanofsky, C. (January 2008) A tribute to Arthur Kornberg 1918-2007. Nature Structural & Molecular Biology, 15 (1). pp. 2-17. ISSN 1545-9985

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Zhou, R., Hotta, I., Denli, A. M., Hong, P., Perrimon, N., Hannon, G. J. (2008) Comparative Analysis of Argonaute-Dependent Small RNA Pathways in Drosophila. Molecular Cell, 32 (4). pp. 592-599. ISSN 10972765 (ISSN)

de Sevilla, D. F., Núñez, A., Borde, M., Malinow, R., Buño, W. (2008) Cholinergic-mediated IP3-ereceptor activation induces long-lasting synaptic enhancement in CA1 pyramidal neurons. Journal of Neuroscience, 28 (6). pp. 1469-1478. ISSN 0270-6474

dos Santos, Camila O, Dore, Louis C, Valentine, Eric, Shelat, Suresh G, Hardison, Ross C, Ghosh, Manik, Wang, Wei, Eisenstein, Richard S, Costa, Fernando F, Weiss, Mitchell J (October 2008) An iron responsive element-like stem-loop regulates alpha-hemoglobin-stabilizing protein mRNA. Journal of Biological Chemistry, 283 (40). pp. 26956-26964. ISSN 0021-9258

Book Section

Günay, Cengiz, Smolinski, Tomasz G, Lytton, William W, Morse, Thomas M, Gleeson, Padraig, Crook, Sharon, Steuber, Volker, Silver, Angus, Voicu, Horatiu, Andrews, Peter, Bokil, Hemant, Maniar, Hiren, Loader, Catherine, Mehta, Samar, Kleinfeld, David, Thomson, David, Mitra, Partha P., Aaron, Gloster, Fellous, Jean-Marc (2008) Computational Intelligence in Electrophysiology: Trends and Open Problems. In: Applications of Computational Intelligence in Biology. Studies in Computational Intelligence, 122 . Springer Berlin Heidelberg, pp. 325-359. ISBN 978-3-540-78533-0

Lawrence, Carolyn J., Ware, Doreen (2008) Databases and data mining. In: Handbook of Maize: History and Practice of Genetics and Genomics. Springer Science + Business Media LLC, pp. 659-672. ISBN 978-0-387-77862-4

Lyons, S. K. (2008) Bioluminescence Imaging. In: Encyclopedia of Cancer. Springer. ISBN 978-3-540-47648-1

Paddison, P. J. (2008) RNA interference in mammalian cell systems. In: RNA Interference. Curr Top Microbiol Immunol, 320 . Springer Verlag, Berlin; New York, pp. 1-19. ISBN 978-3-540-75156-4

Zhang, Yu, Song, Giltae, Vinar, Tomas, Green, EricD, Siepel, Adam, Miller, Webb (2008) Reconstructing the Evolutionary History of Complex Human Gene Clusters. In: Research in Computational Molecular Biology. Lecture Notes in Computer Science, 4955 . Springer Berlin Heidelberg, pp. 29-49. ISBN 978-3-540-78838-6

Monograph

Stillman, Bruce (2008) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Conference or Workshop Item

Albeanu, Dinu F, Soucy, Edward, Murthy, Venkatesh N (October 2008) Olfactory Sensory Axons Expressing Different Receptors Converge on Individual Glomeruli in Mice Lacking Olfactory Marker Protein. In: 15th International Symposium on Olfaction and Taste.

Grodzicker, T., Stewart, D., Stillman, B. (2008) Control and Regulation of Stem Cells. In: Cold Spring Harbor Symposia on Quantitative Biology LXXIII: Control and Regulation of Stem Cells, Cold Spring Harbor.

Book

Paddison, P. J., Vogt, P. K., eds. (2008) RNA Interference. Curr Top Microbiol Immunol, 320 . Springer Verlag, Berlin; New York. ISBN 978-3-540-75156-4

Navlakha, S., Rastogi, R., Shrivastava, N. (June 2008) Graph summarization with bounded error. ACM, 419-431; Art no. 1376661. ISBN 07308078 (ISSN); 9781605581026 (ISBN)

Watson, J.D., Baker, T., Bell, S., Gann, A., Levine, M., Losick, R. (2008) Molecular Biology of the Gene. Pearson/Benjamin Cummings. ISBN 9780805395921

Witkowski, J.A., Gann, A., Sambrook, J. (2008) Life Illuminated: Selected Papers from Cold Spring Harbor. Cold Spring Harbor Laboratory Press. ISBN 9780879698041

Witkowski, J.A., Inglis, J.R. (2008) Davenport's Dream: 21st Century Reflections on Heredity and Eugenics. Cold Spring Harbor Laboratory Press. ISBN 9780879697563

Thesis

Chiu, S. L. (July 2008) The role of insulin receptor in the development of neuronal structure and function. PhD thesis, Cold Spring Harbor Laboratory.

Girard, A. (February 2008) Mammalian Piwi proteins and transposon silencing in the male germline. PhD thesis, Cold Spring Harbor Laboratory.

Harvey, C. D. (February 2008) Dynamics of Plasticity and Signaling at Individual Synapses. PhD thesis, Cold Spring Harbor Laboratory.

Kinney, J. B. (2008) Biophysical models of transcriptional regulation from sequence data. PhD thesis, Princeton University.

Wei, W. (February 2008) The Interplay Between Amyloid-β and Neural Activity. PhD thesis, Cold Spring Harbor Laboratory.

Video

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) CD11c+ dendritic-like cells migrate at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Carcinoma-associated fibroblasts in different tumor microenvironments. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Foxp3+ regulatory T cells migrate along blood vessels and at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Gr1+ myeloid cells are a patrolling subpopulation of the tumor-infiltrating myeloid cells. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Infiltration and migration of c-fms+ myeloid cells in the tumor microenvironment. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Migration of Foxp3+ regulatory T-lymphocytes is stopped in response to hypoxia. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) c-fms+ myeloid cells migrate in the normal mammary gland. [Video]