Items where Year is 2024

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Number of items: 255.

A

Aghi, K, Anderson, BM, Castellano, BM, Cunningham, A, Delano, M, Dickinson, ES, von Diezmann, L, Forslund-Startceva, SK, Grijseels, DM, Groh, SS, Guthman, EM, Jayasinghe, I, Johnston, J, Long, S, McLaughlin, JF, McLaughlin, M, Miyagi, M, Rajaraman, B, Sancheznieto, F, Scheim, AI, Sun, SD, Titmuss, FD, Walsh, RJ, Weinberg, ZY (March 2024) Rigorous science demands support of transgender scientists. Cell, 187 (6). pp. 1327-1334. ISSN 0092-8674

Aghi, K, Goetz, TG, Pfau, DR, Sun, SD, Guthman, EM, Roepke, TA (January 2024) Using Animal Models for Gender-Affirming Hormone Therapy. Journal of the Endocrine Society, 8 (1). ISSN 2472-1972

Aguado, Brian A, Jeffries, Daniel L, Jordan-Young, Rebecca, Klein, Sabra L, Lett, Elle, Stachenfeld, Nina, Tollkuhn, Jessica, Xu, Xiaohong (March 2024) The future of sex and gender in research. Cell, 187 (6). pp. 1354-1357. ISSN 0092-8674

Aguzzoli Heberle, Bernardo, Brandon, J Anthony, Page, Madeline L, Nations, Kayla A, Dikobe, Ketsile I, White, Brendan J, Gordon, Lacey A, Fox, Grant A, Wadsworth, Mark E, Doyle, Patricia H, Williams, Brittney A, Fox, Edward J, Shantaraman, Anantharaman, Ryten, Mina, Goodwin, Sara, Ghiban, Elena, Wappel, Robert, Mavruk-Eskipehlivan, Senem, Miller, Justin B, Seyfried, Nicholas T, Nelson, Peter T, Fryer, John D, Ebbert, Mark TW (May 2024) Mapping medically relevant RNA isoform diversity in the aged human frontal cortex with deep long-read RNA-seq. Nature Biotechnology. ISSN 1087-0156 (Public Dataset)

Alewine, Christine, Harris, Curtis C, Maitra, Anirban, Pine, Sharon R, Tuveson, David (November 2024) Editorial: special issue on the latest advances and challenges in pancreas cancer research in memory of S. Perwez Hussain. Carcinogenesis, 45 (11). pp. 799-800. ISSN 0143-3334

Alpsoy, Aktan, Wu, Xiaoli S, Pal, Sujay, Klingbeil, Olaf, Kumar, Pramod, El Demerdash, Osama, Nalbant, Benan, Vakoc, Christopher R (January 2024) IκBζ is a dual-use coactivator of NF-κB and POU transcription factors. Molecular Cell. S1097-2765(24)00008. ISSN 1097-2765 (Public Dataset)

Amit, Moran, Anastasaki, Corina, Dantzer, Robert, Demir, Ihsan Ekin, Deneen, Benjamin, Dixon, Karen O, Egeblad, Mikala, Gibson, Erin M, Hervey-Jumper, Shawn L, Hondermarck, Hubert, Magnon, Claire, Monje, Michelle, Na'ara, Shorook, Pan, Yuan, Repasky, Elizabeth A, Scheff, Nicole N, Sloan, Erica K, Talbot, Sebastien, Tracey, Kevin J, Trotman, Lloyd C, Valiente, Manuel, Van Aelst, Linda, Venkataramani, Varun, Venkatesh, Humsa S, Vermeer, Paola D, Winkler, Frank, Wong, Richard J, Gutmann, David H, Borniger, Jeremy C (April 2024) Next Directions in the Neuroscience of Cancers Arising outside the CNS. Cancer Discovery, 14 (4). pp. 669-673. ISSN 2159-8274

Amor, Corina, Fernández-Maestre, Inés, Chowdhury, Saria, Ho, Yu-Jui, Nadella, Sandeep, Graham, Courtenay, Carrasco, Sebastian E, Nnuji-John, Emmanuella, Feucht, Judith, Hinterleitner, Clemens, Barthet, Valentin JA, Boyer, Jacob A, Mezzadra, Riccardo, Wereski, Matthew G, Tuveson, David A, Levine, Ross L, Jones, Lee W, Sadelain, Michel, Lowe, Scott W (January 2024) Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. Nature Aging. ISSN 2662-8465 (Public Dataset)

Asiimwe, Rebecca, Alexander, Dobin (February 2024) STAR+WASP reduces reference bias in the allele-specific mapping of RNA-seq reads. bioRxiv. (Submitted)

Avissar-Whiting, Michele, Belliard, Frédérique, Bertozzi, Stefano M, Brand, Amy, Brown, Katherine, Clément-Stoneham, Géraldine, Dawson, Stephanie, Dey, Gautam, Ecer, Daniel, Edmunds, Scott C, Farley, Ashley, Fischer, Tara D, Franko, Maryrose, Fraser, James S, Funk, Kathryn, Ganier, Clarisse, Harrison, Melissa, Hatch, Anna, Hazlett, Haley, Hindle, Samantha, Hook, Daniel W, Hurst, Phil, Kamoun, Sophien, Kiley, Robert, Lacy, Michael M, LaFlamme, Marcel, Lawrence, Rebecca, Lemberger, Thomas, Leptin, Maria, Lumb, Elliott, MacCallum, Catriona J, Marcum, Christopher Steven, Marinello, Gabriele, Mendonça, Alex, Monaco, Sara, Neves, Kleber, Pattinson, Damian, Polka, Jessica K, Puebla, Iratxe, Rittman, Martyn, Royle, Stephen J, Saderi, Daniela, Sever, Richard, Shearer, Kathleen, Spiro, John E, Stern, Bodo, Taraborelli, Dario, Vale, Ron, Vasquez, Claudia G, Waltman, Ludo, Watt, Fiona M, Weinberg, Zara Y, Williams, Mark (February 2024) Recommendations for accelerating open preprint peer review to improve the culture of science. PLoS Biology, 22 (2). e3002502. ISSN 1544-9173

B

Badger, Jonathan H, Giordano, Rosanna, Zimin, Aleksey, Wappel, Robert, Eskipehlivan, Senem M, Muller, Stephanie, Donthu, Ravikiran, Soto-Adames, Felipe, Vieira, Paulo, Zasada, Inga, Goodwin, Sara (February 2024) Direct sequencing of insect symbionts via nanopore adaptive sampling. Current Opinion in Insect Science, 61. p. 101135. ISSN 2214-5745

Banerjee, Amitava, Pattinson, David J, Wincek, Cornelia L, Bunk, Paul, Chapin, Sarah R, Navlakha, Saket, Meyer, Hannah V (January 2024) BATMAN: Improved T cell receptor cross-reactivity prediction benchmarked on a comprehensive mutational scan database. bioRxiv. (Submitted)

Banerjee, Arkarup, Chen, Feng, Druckmann, Shaul, Long, Michael A (January 2024) Temporal scaling of motor cortical dynamics reveals hierarchical control of vocal production. Nature Neuroscience. ISSN 1097-6256

Banerjee, Arkarup, Isko, Emily, Harpole, Clifford, Zheng, Xiaoyue, Zhan, Huiqing, Davis, Martin, Zador, Anthony (September 2024) Selective expansion of motor cortical projections in the evolution of vocal novelty. bioRxiv. ISSN 2692-8205 (Submitted)

Barbi, Mali, Gorman, Megan, John, Veena S (September 2024) Navigating Hormone Therapy in Postmenopausal Women: Balancing Symptom Relief With Cancer Risk. Journal of Clinical Oncology. JCO2401352. ISSN 0732-183X

Barbi, Mali, Gowthaman, Divya, Katcher, Arielle, Gorman, Megan, Yueh, Brian, Nizam, Aaron, Chung, Charlie, Akyildiz, Erdogan Oguzhan, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (October 2024) Generation and Maintenance of Patient-Derived Endometrial Cancer Organoids. Bio-protocol, 14 (20). e5093. ISSN 2331-8325

Benitz, Simone, Steep, Alec, Nasser, Malak M, Preall, Jonathan, Mahajan, Ujjwal Mukund, McQuithey, Holly, Loveless, Ian, Davis, Erick T, Wen, Hui-Ju, Long, Daniel W, Metzler, Thomas, Zwernik, Samuel, Louw, Michaela, Rempinski, Donald, Salas-Escabillas, Daniel J, Brender, Sydney M, Song, Linghao, Huang, Ling, Theisen, Brian K, Zhang, Zhenyu, Steele, Nina G, Regel, Ivonne, Bednar, Filip, Crawford, Howard C (July 2024) ROR2 Regulates Cellular Plasticity in Pancreatic Neoplasia and Adenocarcinoma. Cancer Discovery. ISSN 2159-8274 (Public Dataset)

Bermejo-Rodriguez, Camino, Araos Henríquez, Joaquín, Caligiuri, Giuseppina, Pinto Teles, Sara, Park, Youngkyu, Evans, Anthony, Barrera, Lawrence N, Neesse, Albrecht, Grutzmann, Robert, Aust, Daniela, Rümmele, Petra, Knösel, Thomas, Narita, Masako, Narita, Masashi, Campbell, Fiona, Öhlund, Daniel, Pilarsky, Christian, Dow, Lukas E, Humbert, Patrick O, Biffi, Giulia, Tuveson, David A, Perez-Mancera, Pedro A (July 2024) Scribble Deficiency Promotes Pancreatic Ductal Adenocarcinoma Development and Metastasis. Cancer Research. ISSN 0008-5472 (Public Dataset)

Berube, Benjamin, Ernst, Evan, Cahn, Jonathan, Roche, Benjamin, de Santis Alves, Cristiane, Lynn, Jason, Scheben, Armin, Grimanelli, Daniel, Siepel, Adam, Ross-Ibarra, Jeffrey, Kermicle, Jerry, Martienssen, Robert A (August 2024) Teosinte Pollen Drive guides maize diversification and domestication by RNAi. Nature. ISSN 0028-0836 (Public Dataset)

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael M, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, International Brain Laboratory, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (July 2024) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools. Nature Methods, 21 (7). pp. 1316-1328. ISSN 1548-7091

Boelaars, Kelly, Rodriguez, Ernesto, Huinen, Zowi R, Liu, Chang, Wang, Di, Springer, Babet O, Olesek, Katarzyna, Goossens-Kruijssen, Laura, van Ee, Thomas, Lindijer, Dimitri, Tak, Willemijn, de Haas, Aram, Wehry, Laetitia, Nugteren-Boogaard, Joline P, Mikula, Aleksandra, de Winde, Charlotte M, Mebius, Reina E, Tuveson, David A, Giovannetti, Elisa, Bijlsma, Maarten F, Wuhrer, Manfred, van Vliet, Sandra J, van Kooyk, Yvette (April 2024) Pancreatic cancer-associated fibroblasts modulate macrophage differentiation via sialic acid-Siglec interactions. Communications Biology, 7 (1). p. 430. ISSN 2399-3642 (Public Dataset)

Boire, Adrienne, Burke, Katy, Cox, Thomas R, Guise, Theresa, Jamal-Hanjani, Mariam, Janowitz, Tobias, Kaplan, Rosandra, Lee, Rebecca, Swanton, Charles, Vander Heiden, Matthew G, Sahai, Erik (June 2024) Why do patients with cancer die? Nature Reviews Cancer. ISSN 1474-175X

Bojmar, Linda, Zambirinis, Constantinos P, Hernandez, Jonathan M, Chakraborty, Jayasree, Shaashua, Lee, Kim, Junbum, Johnson, Kofi Ennu, Hanna, Samer, Askan, Gokce, Burman, Jonas, Ravichandran, Hiranmayi, Zheng, Jian, Jolissaint, Joshua S, Srouji, Rami, Song, Yi, Choubey, Ankur, Kim, Han Sang, Cioffi, Michele, van Beek, Elke, Sigel, Carlie, Jessurun, Jose, Velasco Riestra, Paulina, Blomstrand, Hakon, Jönsson, Carolin, Jönsson, Anette, Lauritzen, Pernille, Buehring, Weston, Ararso, Yonathan, Hernandez, Dylanne, Vinagolu-Baur, Jessica P, Friedman, Madison, Glidden, Caroline, Firmenich, Laetitia, Lieberman, Grace, Mejia, Dianna L, Nasar, Naaz, Mutvei, Anders P, Paul, Doru M, Bram, Yaron, Costa-Silva, Bruno, Basturk, Olca, Boudreau, Nancy, Zhang, Haiying, Matei, Irina R, Hoshino, Ayuko, Kelsen, David, Sagi, Irit, Scherz, Avigdor, Scherz-Shouval, Ruth, Yarden, Yosef, Oren, Moshe, Egeblad, Mikala, Lewis, Jason S, Keshari, Kayvan, Grandgenett, Paul M, Hollingsworth, Michael A, Rajasekhar, Vinagolu K, Healey, John H, Björnsson, Bergthor, Simeone, Diane M, Tuveson, David A, Iacobuzio-Donahue, Christine A, Bromberg, Jaqueline, Vincent, C Theresa, O'Reilly, Eileen M, DeMatteo, Ronald P, Balachandran, Vinod P, D'Angelica, Michael I, Kingham, T Peter, Allen, Peter J, Simpson, Amber L, Elemento, Olivier, Sandström, Per, Schwartz, Robert E, Jarnagin, William R, Lyden, David (June 2024) Multi-parametric atlas of the pre-metastatic liver for prediction of metastatic outcome in early-stage pancreatic cancer. Nature Medicine. ISSN 1078-8956 (Public Dataset)

Borniger, Jeremy C (October 2024) Cancer neuroscience at the brain-body interface. Genes & Development. ISSN 0890-9369

Boyer, Jacob A, Sharma, Malvika, Dorso, Madeline, Mai, Nicholas, Amor, Corina, Reiter, Jason M, Kannan, Ram, Gadal, Sunyana, Xu, Jianing, Miele, Matthew, Zhuoning, Li, Chen, Xiaoping, Chang, Qing, Pareja, Fresia, Worland, Stephan, Warner, Douglas, Sperry, Sam, Chiang, Gary G, Thompson, Peggy A, Yang, Guangli, Ouerfelli, Ouathek, De Stanchina, Elisa, Wendel, Hans G, Rosen, Ezra Y, Chandarlapaty, Sarat, Rosen, Neal (May 2024) eIF4A controls translation of estrogen receptor alpha and is a therapeutic target in advanced breast cancer. bioRxiv. (Submitted)

Burbridge, Timothy J, Ratliff, Jacob M, Dwivedi, Deepanjali, Vrudhula, Uma, Alvarado-Huerta, Francisco, Sjulson, Lucas, Ibrahim, Leena Ali, Cheadle, Lucas, Fishell, Gordon, Batista-Brito, Renata (April 2024) Disruption of Cholinergic Retinal Waves Alters Visual Cortex Development and Function. bioRxiv. (Public Dataset) (Submitted)

C

Carcy, Salomé (May 2024) How Human and Murine T Cells Meet Their Fate: Cross-Species Comparison of Conventional and Innate T Cells. PhD thesis, Cold Spring Harbor Laboratory.

Cassandri, Matteo, Porrazzo, Antonella, Pomella, Silvia, Noce, Beatrice, Zwergel, Clemens, Aiello, Francesca Antonella, Vulcano, Francesca, Milazzo, Luisa, Camero, Simona, Pajalunga, Deborah, Spada, Massimo, Manzi, Valeria, Gravina, Giovanni Luca, Codenotti, Silvia, Piccione, Michela, Tomaciello, Miriam, Signore, Michele, Barillari, Giovanni, Marchese, Cinzia, Fanzani, Alessandro, De Angelis, Biagio, Quintarelli, Concetta, Vakoc, Christopher R, Chen, Eleanor Y, Megiorni, Francesca, Locatelli, Franco, Valente, Sergio, Mai, Antonello, Rota, Rossella, Marampon, Francesco (August 2024) HDAC3 genetic and pharmacologic inhibition radiosensitizes fusion positive rhabdomyosarcoma by promoting DNA double-strand breaks. Cell Death Discovery, 10 (1). p. 351. ISSN 2058-7716 (Public Dataset)

Chen, Qian, Wang, Saisai, Zhang, Juqing, Xie, Min, Lu, Bin, He, Jie, Zhen, Zhuoran, Li, Jing, Zhu, Jiajun, Li, Rong, Li, Pilong, Wang, Haifeng, Vakoc, Christopher, Roeder, Robert G, Chen, Mo (October 2024) JMJD1C forms condensates to facilitate a RUNX1-dependent gene expression program shared by multiple types of AML cells. Protein and Cell. pwae059. ISSN 1674-800X (Public Dataset)

Chen, Wei-Chia, Zhou, Juannan, McCandlish, David M (October 2024) Density estimation for ordinal biological sequences and its applications. Physical Review E, 110 (4). ISSN 2470-0045

Chen, Xiaoyin, Fischer, Stephan, Rue, Mara CP, Zhang, Aixin, Mukherjee, Didhiti, Kanold, Patrick O, Gillis, Jesse, Zador, Anthony M (April 2024) Whole-cortex in situ sequencing reveals input-dependent area identity. Nature. ISSN 0028-0836

Chorbadjiev, Liubomir, Cokol, Murat, Weinstein, Zohar, Shi, Kevin, Fleisch, Chris, Dimitrov, Nikolay, Mladenov, Svetlin, Xu, Simon, Hall, Jake, Ford, Steven, Lee, Yoon-Ha, Yamrom, Boris, Marks, Steven, Munoz, Adriana, Lash, Alex, Volfovsky, Natalia, Iossifov, Ivan (February 2024) The Genotype and Phenotypes in Families (GPF) platform manages the large and complex data at SFARI. bioRxiv. (Submitted)

Chou, Tsung-Han, Epstein, Max, Fritzemeier, Russell G, Akins, Nicholas S, Paladugu, Srinu, Ullman, Elijah Z, Liotta, Dennis C, Traynelis, Stephen F, Furukawa, Hiro (August 2024) Molecular mechanism of ligand gating and opening of NMDA receptor. Nature, 632 (8023). pp. 209-217. ISSN 0028-0836 (Public Dataset)

Chougule, K, Tello-Ruiz, MK, Wei, S, Olson, A, Lu, Z, Kumari, S, Kumar, V, Contreras-Moreira, B, Naamati, G, Dyer, S, Papatheodorou, I, George, N, Elser, J, Naithani, S, Jaiswal, P, Ware, D (January 2024) Pan genome resources for grapevine. In: UNSPECIFIED.

Chung, Taemoon, Merrill, Joseph R, Lyons, Scott K (2024) CRISPR/Cas for PET Reporter Gene Engineering. In: Methods in Molecular Biology. UNSPECIFIED, pp. 285-301. ISBN 9781071634981

Ciren, Danielle (February 2024) Decoding cis-regulatory control and evolution of conserved and divergent phenotypes in plants. PhD thesis, Cold Spring Harbor Laboratory.

Ciren, Danielle, Zebell, Sophia, Lippman, Zachary B (March 2024) Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator. PLoS Genetics, 20 (3). e1011174. ISSN 1553-7390

Cohen, Ashley B, Christensen, Lisa N, Weber, Felix, Yagudaeva, Milana, Lo, Evan, Henkes, Gregory A, McCormick, Michael L, Taylor, Gordon T (March 2024) Preserved particulate organic carbon is likely derived from the subsurface sulfidic photic zone of the Proterozoic Ocean: evidence from a modern, oxygen-deficient lake. Geobiology, 22 (2). e12593. ISSN 1472-4677

Colucci, Manuel, Zumerle, Sara, Bressan, Silvia, Gianfanti, Federico, Troiani, Martina, Valdata, Aurora, D'Ambrosio, Mariantonietta, Pasquini, Emiliano, Varesi, Angelica, Cogo, Francesca, Mosole, Simone, Dongilli, Cristina, Desbats, Maria Andrea, Contu, Liliana, Revankdar, Ajinkya, Chen, Jingjing, Kalathur, Madhuri, Perciato, Maria Luna, Basilotta, Rossella, Endre, Laczko, Schauer, Stefan, Othman, Alaa, Guccini, Ilaria, Saponaro, Miriam, Maraccani, Luisa, Bancaro, Nicolò, Lai, Ping, Liu, Lei, Pernigoni, Nicolò, Mele, Federico, Merler, Sara, Trotman, Lloyd C, Guarda, Greta, Calì, Bianca, Montopoli, Monica, Alimonti, Andrea (February 2024) Retinoic acid receptor activation reprograms senescence response and enhances anti-tumor activity of natural killer cells. Cancer Cell. S1535-6108(24)00048. ISSN 1535-6108 (Public Dataset)

Comen, Elizabeth, Budhu, Sadna, Elhanati, Yuval, Page, David, Rasalan-Ho, Teresa, Ritter, Erika, Wong, Phillip, Plitas, George, Patil, Sujata, Brogi, Edi, Jochelson, Maxine, Bryce, Yolanda, Solomon, Stephen B, Norton, Larry, Merghoub, Taha, McArthur, Heather L (February 2024) Preoperative immune checkpoint inhibition and cryoablation in early-stage breast cancer. iScience, 27 (2). p. 108880. ISSN 2589-0042

Coté, Allison, O'Farrell, Aoife, Dardani, Ian, Dunagin, Margaret, Coté, Chris, Wan, Yihan, Bayatpour, Sareh, Drexler, Heather L, Alexander, Katherine A, Chen, Fei, Wassie, Asmamaw T, Patel, Rohan, Pham, Kenneth, Boyden, Edward S, Berger, Shelly, Phillips-Cremins, Jennifer, Churchman, L Stirling, Raj, Arjun (April 2024) Post-transcriptional splicing can occur in a slow-moving zone around the gene. eLife, 12. ISSN 2050-084X (Public Dataset)

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Ireland, Elise, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (May 2024) Mapping model units to visual neurons reveals population code for social behaviour. Nature. ISSN 0028-0836 (Public Dataset)

Critical Assessment of Genome Interpretation Consortium (February 2024) CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods. Genome Biology, 25 (1). p. 53. ISSN 1474-7596

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Dai, Enyong, Chen, Xin, Linkermann, Andreas, Jiang, Xuejun, Kang, Rui, Kagan, Valerian E, Bayir, Hülya, Yang, Wan Seok, Garcia-Saez, Ana J, Ioannou, Maria S, Janowitz, Tobias, Ran, Qitao, Gu, Wei, Gan, Boyi, Krysko, Dmitri V, Zhu, Xiaofeng, Wang, Jiayi, Krautwald, Stefan, Toyokuni, Shinya, Xie, Yangchun, Greten, Florian R, Yi, Qing, Schick, Joel, Liu, Jiao, Gabrilovich, Dmitry I, Liu, Jinbao, Zeh, Herbert J, Zhang, Donna D, Yang, Minghua, Iovanna, Juan, Kopf, Manfred, Adolph, Timon E, Chi, Jen-Tsan, Li, Changfeng, Ichijo, Hidenori, Karin, Michael, Sankaran, Vijay G, Zou, Weiping, Galluzzi, Lorenzo, Bush, Ashley I, Li, Binghui, Melino, Gerry, Baehrecke, Eric H, Lotze, Michael T, Klionsky, Daniel J, Stockwell, Brent R, Kroemer, Guido, Tang, Daolin (February 2024) A guideline on the molecular ecosystem regulating ferroptosis. Nature Cell Biology. ISSN 1465-7392

Dale, Savanah Marie, Tomaszewski, Elise, Lippman, Zachary, Van Eck, Joyce (July 2024) Engineering the future of Physalis grisea: A focus on agricultural challenges, model species status, and applied improvements. Plants People Planet. ISSN 2572-2611

Damoci, Chris B, Merrill, Joseph R, Sun, Yanping, Lyons, Scott K, Olive, Kenneth P (March 2024) Addressing Biological Questions with Preclinical Cancer Imaging. Cold Spring Harbor Perspectives in Medicine. a041378-a041378. ISSN 2157-1422

Daruwalla, Kyle, Lipasti, Mikko (May 2024) Information bottleneck-based Hebbian learning rule naturally ties working memory and synaptic updates. Frontiers in Computational Neuroscience, 18. p. 1240348. ISSN 1662-5188

Daruwalla, Kyle, Martin, Irene Nozal, Frankel, Andrew, Naglic, Diana, Ahmad, Zainab, Hou, Xun Helen (May 2024) A 3D whole-face movement analysis system to uncover underlying physiology in mice. bioRxiv. (Submitted)

Dasgupta, Sanjoy, Meirovitch, Yaron, Zheng, Xingyu, Bush, Inle, Lichtman, Jeff W, Navlakha, Saket (September 2024) A neural algorithm for computing bipartite matchings. Proceedings of the National Academy of Sciences of the United States of America, 121 (37). e2321032121. ISSN 0027-8424 (Public Dataset)

Dumontier, Dimitri, Liebman, Samuel A, Le, Viet-Hang, George, Shanu, Valdemar, Deasia, Van Aelst, Linda, Pouchelon, Gabrielle (September 2024) Restoring transient connectivity during development improves dysfunctions in fragile X mice. bioRxiv. ISSN 2692-8205 (Submitted)

Duplaquet, Leslie, So, Kevin, Ying, Alexander W, Pal Choudhuri, Shreoshi, Li, Xinyue, Xu, Grace D, Li, Yixiang, Qiu, Xintao, Li, Rong, Singh, Shilpa, Wu, Xiaoli S, Hamilton, Seth, Chien, Victor D, Liu, Qi, Qi, Jun, Somerville, Tim DD, Heiling, Hillary M, Mazzola, Emanuele, Lee, Yenarae, Zoller, Thomas, Vakoc, Christopher R, Doench, John G, Forrester, William C, Abrams, Tinya, Long, Henry W, Niederst, Matthew J, Drapkin, Benjamin J, Kadoch, Cigall, Oser, Matthew G (July 2024) Mammalian SWI/SNF complex activity regulates POU2F3 and constitutes a targetable dependency in small cell lung cancer. Cancer Cell. S1535-6108(24)00237. ISSN 1535-6108 (Public Dataset)

Dussauze, Marie (February 2024) Sensorimotor neural representations in the olfactory cortex. PhD thesis, Cold Spring Harbor Laboratory.

Dwivedi, Deepanjali, Dumontier, Dimitri, Sherer, Mia, Lin, Sherry, Mirow, Andrea MC, Qiu, Yanjie, Xu, Qing, Liebman, Samuel A, Joseph, Djeckby, Datta, Sandeep R, Fishell, Gord, Pouchelon, Gabrielle (June 2024) Metabotropic signaling within somatostatin interneurons controls transient thalamocortical inputs during development. Nature Communications, 15 (1). p. 5421. ISSN 2041-1723 (Public Dataset)

Dzien, Piotr, Raffo Iraolagoitia, Ximena, May, Stephanie, Stevenson, David, McGarry, Lynn, Soloviev, Dmitry, Brown, Gavin, Nixon, Colin, Kapeni, Chrysa, De La Roche, Maike, Blyth, Karen, Lyons, Scott, Bird, Thomas, Strathdee, Douglas, Fruhwirth, Gilbert, Carlin, Leo, Lewis, David (April 2024) Multi-scale in vivo imaging of tumour development using a germline conditional triple-reporter system. Res Sq.

de Oliveira, Beatriz Cristina Dias, Shiburah, Mark Ewusi, Assis, Luiz Henrique Castro, Fontes, Veronica Silva, Bisetegn, Habtye, de Oliveira Passos, Arthur, de Oliveira, Leilane S, de Santis Alves, Cristiane, Ernst, Evan, Martienssen, Rob, Gallo-Francisco, Pedro Henrique, Giorgio, Selma, Batista, Marcos Meuser, de Nazaré Correia Soeiro, Maria, Menna-Barreto, Rubem Figueiredo Sadok, Aoki, Juliana Ide, Coelho, Adriano Cappellazzo, Cano, Maria Isabel Nogueira (August 2024) Leishmania major telomerase RNA knockout: From altered cell proliferation to decreased parasite infectivity. International Journal of Biological Macromolecules. p. 135150. ISSN 0141-8130

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Ecker, DJ, Aiello, CD, Arron, JR, Bennett, CF, Bernard, A, Breakefield, XO, Broderick, TJ, Callier, SL, Canton, B, Chen, JS, Fishburn, CS, Garrett, B, Hecht, SM, Janowitz, T, Kliegman, M, Krainer, A, Louis, CU, Lowe, C, Sehgal, A, Tozan, Y, Tracey, KJ, Urnov, F, Wattendorf, D, Williams, TW, Zhao, X, Hayden, MR (February 2024) Opportunities and challenges for innovative and equitable healthcare. Nature Reviews Drug Discovery. ISSN 1474-1776

Elhussein, Ahmed, Baymuradov, Ulugbek, NYGC ALS Consortium, Elhadad, Noémie, Natarajan, Karthik, Gürsoy, Gamze (September 2024) A framework for sharing of clinical and genetic data for precision medicine applications. Nature Medicine. ISSN 1078-8956 (Public Dataset)

Elkin, Rena, Oh, Jung Hun, Dela Cruz, Filemon, Norton, Larry, Deasy, Joseph O, Kung, Andrew L, Tannenbaum, Allen R (January 2024) Dynamic network curvature analysis of gene expression reveals novel potential therapeutic targets in sarcoma. Scientific Reports, 14 (1). p. 488. ISSN 2045-2322 (Public Dataset)

Eskiocak, Onur, Chowdhury, Saria, Shah, Vyom, Nnuji-John, Emmanuella, Chung, Charlie, Boyer, Jacob A, Harris, Alexander S, Habel, Jill, Sadelain, Michel, Beyaz, Semir, Amor, Corina (March 2024) Senolytic CAR T cells reverse aging-associated defects in intestinal regeneration and fitness. bioRxiv. (Submitted)

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Faust, Travis E, Devlin, Benjamin A, Farhy-Tselnicker, Isabella, Ferro, Austin, Postolache, Maggie, Xin, Wendy (October 2024) Glial Control of Cortical Neuronal Circuit Maturation and Plasticity. Journal of Neuroscience, 44 (40). e1208242024-e1208242024. ISSN 0270-6474

Ferro, Austin, Arshad, Anosha, Boyd, Leah, Stanley, Tess, Berisha, Adrian, Vrudhula, Uma, Gomez, Adrian M, Borniger, Jeremy C, Cheadle, Lucas M (April 2024) The cytokine receptor Fn14 is a molecular brake on neuronal activity that mediates circadian function in vivo. bioRxiv. (Submitted)

Firoozan, S, Satpathy, S, Shakiba, M, King, DA (September 2024) Recent advances in immunotherapy for pancreatic cancer: a narrative review. Digestive Medicine Research, 7. p. 15. ISSN 2617-1627

G

Gao, Yuan, Vakoc, Christopher R (February 2024) Therapeutic index of targeting select chromatin complexes in human cancer patients. Current Opinion in Genetics and Development, 85. p. 102162. ISSN 0959-437X

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Gegenhuber, Bruno, Tollkuhn, Jessica (2024) Estrogen Receptor Chromatin Profiling by CUT&RUN. In: Methods in Molecular Biology. UNSPECIFIED, pp. 133-150. ISBN 9781071640708

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Gitschlag, Bryan L, Pereira, Claudia V, Held, James P, McCandlish, David M, Patel, Maulik R (September 2024) Multiple distinct evolutionary mechanisms govern the dynamics of selfish mitochondrial genomes in Caenorhabditis elegans. Nature Communications, 15 (1). p. 8237. ISSN 2041-1723 (Public Dataset)

Gladman, Nicholas, Kumari, Sunita, Fahey, Audrey, Regulski, Michael, Ware, Doreen (September 2024) GRAS Family Transcription Factor Binding Behaviors in Sorghum bicolor, Oyrza, and Maize. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Goto, Norihiro, Westcott, Peter MK, Goto, Saori, Imada, Shinya, Taylor, Martin S, Eng, George, Braverman, Jonathan, Deshpande, Vikram, Jacks, Tyler, Agudo, Judith, Yilmaz, Ömer H (February 2024) SOX17 enables immune evasion of early colorectal adenomas and cancers. Nature. ISSN 0028-0836 (Public Dataset)

Grosjean, Nicolas, Zhang, Lifang, Kumaran, Desigan, Xie, Meng, Fahey, Audrey, Santiago, Kassandra, Hu, Fangle, Regulski, Michael, Blaby, Ian K, Ware, Doreen, Blaby-Haas, Crysten E (October 2024) Functional diversification within the heme-binding split-barrel family. Journal of Biological Chemistry. p. 107888. ISSN 0021-9258 (Public Dataset)

Guo, Guangran, Amor, Corina (June 2024) SGLT2 regulates immune-mediated senolysis. Nature Aging. ISSN 2662-8465

Gustafson, Jonas A, Gibson, Sophia B, Damaraju, Nikhita, Zalusky, Miranda Pg, Hoekzema, Kendra, Twesigomwe, David, Yang, Lei, Snead, Anthony A, Richmond, Phillip A, De Coster, Wouter, Olson, Nathan D, Guarracino, Andrea, Li, Qiuhui, Miller, Angela L, Goffena, Joy, Anderson, Zachery, Storz, Sophie Hr, Ward, Sydney A, Sinha, Maisha, Gonzaga-Jauregui, Claudia, Clarke, Wayne E, Basile, Anna O, Corvelo, Andre, Reeves, Catherine E, Helland, Adrienne, Musunuri, Rajeeva Lochan, Revsine, Mahler, Patterson, Karynne E, Paschal, Cate, Zakarian, Christina, Goodwin, Sara, Jensen, Tanner D, Robb, Esther, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CR, Genomics Research to Elucidate the Genetics of Rare Diseases (GR, McCombie, W Richard, Sedlazeck, Fritz J, Zook, Justin M, Montgomery, Stephen B, Garrison, Erik, Kolmogorov, Mikhail, Schatz, Michael C, McLaughlin, Richard N, Dashnow, Harriet, Zody, Michael C, Loose, Matthew, Jain, Miten, Eichler, Evan E, Miller, Danny E (March 2024) Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. medRxiv. (Public Dataset) (Submitted)

Gustafson, Jonas A, Gibson, Sophia B, Damaraju, Nikhita, Zalusky, Miranda Pg, Hoekzema, Kendra, Twesigomwe, David, Yang, Lei, Snead, Anthony A, Richmond, Phillip A, De Coster, Wouter, Olson, Nathan D, Guarracino, Andrea, Li, Qiuhui, Miller, Angela L, Goffena, Joy, Anderson, Zachery B, Storz, Sophie Hr, Ward, Sydney A, Sinha, Maisha, Gonzaga-Jauregui, Claudia, Clarke, Wayne E, Basile, Anna O, Corvelo, Andre, Reeves, Catherine E, Helland, Adrienne, Musunuri, Rajeeva Lochan, Revsine, Mahler, Patterson, Karynne E, Paschal, Cate, Zakarian, Christina, Goodwin, Sara, Jensen, Tanner D, Robb, Esther, 1000 Genomes ONT Sequencing Consortium, University of Washington Center for Rare Disease Research (UW-CR, Genomics Research to Elucidate the Genetics of Rare Diseases (GR, McCombie, W Richard, Sedlazeck, Fritz J, Zook, Justin M, Montgomery, Stephen B, Garrison, Erik, Kolmogorov, Mikhail, Schatz, Michael C, McLaughlin, Richard N, Dashnow, Harriet, Zody, Michael C, Loose, Matthew, Jain, Miten, Eichler, Evan E, Miller, Danny E (October 2024) High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. Genome Research. gr.279273.124-gr.279273.124. ISSN 1088-9051 (Public Dataset)

Gustison, Morgan L, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Phelps, Steven M (February 2024) Sexual coordination in a whole-brain map of prairie vole pair bonding. eLife, 12. RP87029. ISSN 2050-084X (Public Dataset)

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Habowski, Amber N, Budagavi, Deepthi P, Scherer, Sandra D, Aurora, Arin B, Caligiuri, Giuseppina, Flynn, William F, Langer, Ellen M, Brody, Jonathan R, Sears, Rosalie C, Foggetti, Giorgia, Arnal Estape, Anna, Nguyen, Don X, Politi, Katerina A, Shen, Xiling, Hsu, David S, Peehl, Donna M, Kurhanewicz, John, Sriram, Renuka, Suarez, Milagros, Xiao, Sophie, Du, Yuchen, Li, Xiao-Nan, Navone, Nora M, Labanca, Estefania, Willey, Christopher D (January 2024) Patient-Derived Models of Cancer in the NCI PDMC Consortium: Selection, Pitfalls, and Practical Recommendations. Cancers, 16 (3). p. 565. ISSN 2072-6694

Hackett, Jennifer, Pepenella, Sharon, Marco, Cristina Fernandez, Bodt, Louise, Grajales, Lina Ruiz, Petracca, Jeffry, Burke, Justin, Mayle, Allison, Nash, Bruce, Micklos, David A (April 2024) Simple, Robust Invertebrate DNA Barcoding: Chelex-Based DNA Extraction and Optimized COI Amplification. Methods in molecular biology (Clifton, N.J.), 2744. pp. 119-127. ISSN 1064-3745

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He, Tongchen, Xiao, Lanbo, Qiao, Yuanyuan, Klingbeil, Olaf, Young, Eleanor, Wu, Xiaoli S, Mannan, Rahul, Mahapatra, Somnath, Eyunni, Sanjana, Tien, Jean Ching-Yi, Wang, Xiaoju, Zheng, Yang, Kim, NamHoon, Zheng, Heng, Hou, Siyu, Su, Fengyun, Miner, Stephanie J, Mehra, Rohit, Cao, Xuhong, Sekhar, A Chandra, Samajdar, Susanta, Ramachandra, Murali, Parolia, Abhijit, Vakoc, Christopher R, Chinnaiyan, Arul M (January 2024) Targeting the mSWI/SNF Complex in POU2F-POU2AF Transcription Factor-Driven Malignancies. bioRxiv. (Submitted)

He, Tongchen, Xiao, Lanbo, Qiao, Yuanyuan, Klingbeil, Olaf, Young, Eleanor, Wu, Xiaoli S, Mannan, Rahul, Mahapatra, Somnath, Redin, Esther, Cho, Hanbyul, Bao, Yi, Kandarpa, Malathi, Ching-Yi Tien, Jean, Wang, Xiaoju, Eyunni, Sanjana, Zheng, Yang, Kim, NamHoon, Zheng, Heng, Hou, Siyu, Su, Fengyun, Miner, Stephanie J, Mehra, Rohit, Cao, Xuhong, Abbineni, Chandrasekhar, Samajdar, Susanta, Ramachandra, Murali, Dhanasekaran, Saravana M, Talpaz, Moshe, Parolia, Abhijit, Rudin, Charles M, Vakoc, Christopher R, Chinnaiyan, Arul M (June 2024) Targeting the mSWI/SNF complex in POU2F-POU2AF transcription factor-driven malignancies. Cancer Cell. S1535-6108(24)00231. ISSN 1535-6108 (Public Dataset)

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Henry, Samantha, Lewis, Steven Macauley, Cyrill, Samantha Leeanne, Callaway, Mackenzie Kate, Chatterjee, Deeptiman, Hanasoge Somasundara, Amritha Varshini, Jones, Gina, He, Xue-Yan, Caligiuri, Giuseppina, Ciccone, Michael Francis, Diaz, Isabella Andrea, Biswas, Amelia, Hernandez, Evelyn, Ha, Taehoon, Wilkinson, John Erby, Egeblad, Mikala, Tuveson, David Arthur, Oresco dos Santos, Camila (February 2024) Host response during unresolved urinary tract infection alters mammary tissue homeostasis through collagen deposition and TIMP1. bioRxiv. (Public Dataset) (Submitted)

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Hermansen, Erik, Klindt, David A, Dunn, Benjamin A (June 2024) Uncovering 2-D toroidal representations in grid cell ensemble activity during 1-D behavior. Nature Communications, 15 (1). p. 5429. ISSN 2041-1723

Herridge, Rowan P, Dolata, Jakub, Migliori, Valentina, de Santis Alves, Cristiane, Borges, Filipe, Schorn, Andrea J, van Ex, Frédéric, Lin, Ann, Bajczyk, Mateusz, Parent, Jean-Sebastien, Leonardi, Tommaso, Hendrick, Alan, Kouzarides, Tony, Martienssen, Robert A (September 2024) Pseudouridine guides germline small RNA transport and epigenetic inheritance. Nature Structural & Molecular Biology. ISSN 1545-9993 (Public Dataset)

Hindle, Samantha, Sever, Richard (July 2024) Preprints as tools to advance careers. Nature Reviews Cancer. ISSN 1474-175X

Hitchcock, Kathryn E, Miller, Eric D, Shi, Qian, Dixon, Jesse G, Gholami, Sepideh, White, Sarah B, Wu, Christina, Goulet, Christopher C, George, Manju, Jee, Kyung-Wook, Wright, Chadwick L, Yaeger, Rona, Shergill, Ardaman, Hong, Theodore S, George, Thomas J, O'Reilly, Eileen M, Meyerhardt, Jeffrey A, Romesser, Paul B (February 2024) Alliance for clinical trials in Oncology (Alliance) trial A022101/NRG-GI009: a pragmatic randomized phase III trial evaluating total ablative therapy for patients with limited metastatic colorectal cancer: evaluating radiation, ablation, and surgery (ERASur). BMC Cancer, 24 (1). p. 201. ISSN 1471-2407

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Homer, Joshua A, Koelln, Rebecca A, Barrow, Andrew S, Gialelis, Timothy L, Boiarska, Zlata, Steinohrt, Nikita S, Lee, Erinna F, Yang, Wen-Hsuan, Johnson, Robert M, Chung, Taemoon, Habowski, Amber N, Vishwakarma, Dharmendra S, Bhunia, Debmalya, Avanzi, Charlotte, Moorhouse, Adam D, Jackson, Mary, Tuveson, David A, Lyons, Scott K, Lukey, Michael J, Fairlie, W Douglas, Haider, Shozeb M, Steinmetz, Michel O, Prota, Andrea E, Moses, John E (March 2024) Modular synthesis of functional libraries by accelerated SuFEx click chemistry. Chemical Science, 15 (11). pp. 3879-3892. ISSN 2041-6520 (Public Dataset)

Homer, Joshua A, Sun, Shoujun, Koelln, Rebecca A, Moses, John E (January 2024) Protocol for producing phosphoramidate using phosphorus fluoride exchange click chemistry. STAR Protocols, 5 (1). p. 102824. ISSN 2666-1667

Hwang, William L, Perrault, Ella N, Birbrair, Alexander, Mattson, Brandi J, Gutmann, David H, Mabbott, Donald J, Cukierman, Edna, Repasky, Elizabeth A, Sloan, Erica K, Zong, Hui, Demir, Ihsan Ekin, Saloman, Jami L, Borniger, Jeremy C, Hu, Jian, Dietrich, Jorg, Breunig, Joshua J, Çifcibaşı, Kaan, Ahmad Kasm, Khalil Ali, Valiente, Manuel, Wintermark, Max, Acharya, Munjal M, Scheff, Nicole N, D'Silva, Nisha J, Vermeer, Paola D, Wong, Richard J, Talbot, Sebastien, Hervey-Jumper, Shawn L, Wang, Timothy C, Ye, Yi, Pan, Yuan, Bunimovich, Yuri L, Amit, Moran (October 2024) Integrating priorities at the intersection of cancer and neuroscience. Cancer Cell. S1535-6108(24)00362. ISSN 1535-6108

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Itam, Michael O, Iohannes, Sessen D, Albertsen, Marc, Andrade, Maria, Bor, Gilbert Arap, Atta-Krah, Kwesi, Bertram, Robert, Danquah, Eric, Horvath, Diana M, Jones, Todd, Mugehu, Edith, Okwuonu, Ihuoma, Ooko-Ombaka, Amandla, Roberts, Richard J, Slamet-Loedin, Inez, Tripathi, Leena, Ubi, Benjamin Ewa, Varshney, Rajeev K, Venturi, Vittorio, Wagaba, Henry, Zeigler, Robert, Creasey Krainer, Kate M (January 2024) Demonstrating the benefit of agricultural biotechnology in developing countries by bridging the public and private sectors. Nature Plants, 10 (1). pp. 2-5. ISSN 2055-026X

Iyer, Shruti V, Goodwin, Sara, McCombie, William Richard (November 2024) Leveraging the power of long reads for targeted sequencing. Genome Research, 34 (11). pp. 1701-1718. ISSN 1088-9051

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Johansen, Nelson J, Kempynck, Niklas, Zemke, Nathan R, Somasundaram, Saroja, Winter, Seppe De, Hooper, Marcus, Dwivedi, Deepanjali, Lohia, Ruchi, Wehbe, Fabien, Li, Bocheng, Abaffyová, Darina, Armand, Ethan J, Man, Julie De, Eksi, Eren Can, Hecker, Nikolai, Hulselmans, Gert, Konstantakos, Vasilis, Mauduit, David, Mich, John K, Partel, Gabriele, Daigle, Tanya L, Levi, Boaz P, Zhang, Kai, Tanaka, Yoshiaki, Gillis, Jesse, Ting, Jonathan T, Ben-Simon, Yoav, Miller, Jeremy, Ecker, Joseph R, Ren, Bing, Aerts, Stein, Lein, Ed S, Tasic, Bosiljka, Bakken, Trygve E (August 2024) Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex. bioRxiv. (Submitted)

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Kaczmarzyk, Jakub, Koo, Peter, Saltz, Joel (September 2024) Explainable AI for computational pathology identifies model limitations and tissue biomarkers. arXiv. ISSN 2331-8422 (Submitted)

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Karakaya, Eda, Oleinik, Natalia, Edwards, Jazlyn, Tomberlin, Jensen, Barker, Randy Bent, Berber, Burak, Ericsson, Maria, Alsudani, Habeeb, Ergul, Adviye, Beyaz, Semir, Lemasters, John J, Ogretmen, Besim, Albayram, Onder (February 2024) p17/C18-ceramide-mediated mitophagy is an endogenous neuroprotective response in preclinical and clinical brain injury. PNAS Nexus, 3 (2). ISSN 2752-6542

Kelberman, Michael A, Rodberg, Ellen, Arabzadeh, Ehsan, Bair-Marshall, Chloe J, Berridge, Craig W, Berrocoso, Esther, Breton-Provencher, Vincent, Chandler, Daniel J, Che, Alicia, Davy, Oscar, Devilbiss, David M, Downs, Anthony M, Drummond, Gabrielle, Dvorkin, Roman, Fazlali, Zeinab, Froemke, Robert C, Glennon, Erin, Gold, Joshua I, Ito, Hiroki, Jiang, Xiaolong, Johansen, Joshua P, Kaye, Alfred P, Kim, Jenny R, Kuo, Chao-Cheng, Liu, Rong-Jian, Liu, Yang, Llorca-Torralba, Meritxell, McCall, Jordan G, McElligott, Zoe A, McKinney, Andrew M, Miguelez, Cristina, Min, Ming-Yuan, Nowlan, Alexandra C, Omrani, Mohsen, Poe, Gina R, Pickering, Anthony Edward, Ranjbar-Slamloo, Yadollah, Razquin, Jone, Rodenkirch, Charles, Sales, Anna C, Satyasambit, Rath, Shea, Stephen D, Sur, Mriganka, Tkaczynski, John Arthur, Torres-Sanchez, Sonia, Uematsu, Akira, Vazquez, Chayla R, Vreven, Amelien, Wang, Qi, Waterhouse, Barry D, Yang, Hsiu-Wen, Yang, Jen-Hau, Zhao, Liping, Zouridis, Ioannis S, Weinshenker, David, Vazey, Elena, Totah, Nelson K (October 2024) Diversity of ancestral brainstem noradrenergic neurons across species and multiple biological factors. bioRxiv. ISSN 2692-8205 (Submitted)

Khalid, Abdullah, Amini, Neda, Pasha, Shamsher A, Demyan, Lyudmyla, Newman, Elliot, King, Daniel A, DePeralta, Danielle, Gholami, Sepideh, Deutsch, Gary B, Melis, Marcovalerio, Weiss, Matthew J (May 2024) Impact of Postoperative Pancreatic Fistula on Outcomes in Pancreatoduodenectomy: A Comprehensive Analysis of ACS-NSQIP Data. Journal of Gastrointestinal Surgery. S1091-255X(24)00483. ISSN 1091-255X

Khorrami, M, Aghamohammadi, A, Aghamohammadi, C (March 2024) Slipping and rolling on a rough accelerating surface. Indian Journal of Physics, 98 (3). pp. 1031-1042. ISSN 0973-1458

Kim, Hyun-Soo, Roche, Benjamin, Bhattacharjee, Sonali, Todeschini, Leila, Chang, An-Yun, Hammell, Christopher, Verdel, André, Martienssen, Robert A (October 2024) Clr4SUV39H1 ubiquitination and non-coding RNA mediate transcriptional silencing of heterochromatin via Swi6 phase separation. Nature Communications, 15 (1). p. 9384. ISSN 2041-1723 (Public Dataset)

Kiyani, Elham, Kooshkbaghi, Mahdi, Shukla, Khemraj, Koneru, Rahul Babu, Li, Zhen, Bravo, Luis, Ghoshal, Anindya, Karniadakis, George Em, Karttunen, Mikko (2024) Characterization of partial wetting by CMAS droplets using multiphase many-body dissipative particle dynamics and data-driven discovery based on PINNs. Journal of Fluid Mechanics, 985. ISSN 0022-1120

Klindt, David, Zimmermann, Roland, Brendel, Wieland (March 2024) Measuring Mechanistic Interpretability at Scale Without Humans. In: ICLR 2024 Workshop on Representational Alignment.

Klindt, David A, Hyvärinen, Aapo, Levy, Axel, Miolane, Nina, Poitevin, Frédéric (March 2024) Towards Interpretable Cryo-EM: Disentangling Latent Spaces of Molecular Conformations. bioRxiv. (Submitted)

Klindt, David A, Hyvärinen, Aapo, Levy, Axel, Miolane, Nina, Poitevin, Frédéric (July 2024) Towards interpretable Cryo-EM: disentangling latent spaces of molecular conformations. Frontiers in Molecular Biosciences, 11. p. 1393564. ISSN 2296-889X

Klingbeil, Olaf, Skopelitis, Damianos, Tonelli, Claudia, Alpsoy, Aktan, Minicozzi, Francesca, Aggarwal, Disha, Russo, Suzanne, Ha, Taehoon, Demerdash, Osama E, Spector, David L, Tuveson, David A, Cifani, Paolo, Vakoc, Christopher R (February 2024) MARK2/MARK3 kinases are catalytic co-dependencies of YAP/TAZ in human cancer. bioRxiv. (Submitted)

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Knox, Jennifer J, Jaffee, Elizabeth M, O'Kane, Grainne M, King, Daniel, Laheru, Dan, Yu, Kenneth H, Perez, Kimberly, Habowski, Amber N, Grant, Robert C, Fischer, Sandra, Aguirre, Andrew, Jang, Raymond Woo-Jun, Devoe, Craig E, O'Reilly, Eileen M, Dodd, Anna, Wolpin, Brian M, Ye, Xiang Y, Notta, Faiyaz, Gallinger, Steven, Tuveson, David A (June 2024) Early results of the PASS-01 trial: Pancreatic adenocarcinoma signature stratification for treatment-01. In: 2024 ASCO Annual Meeting II.

Koren, Sergey, Bao, Zhigui, Guarracino, Andrea, Ou, Shujun, Goodwin, Sara, Jenike, Katharine M, Lucas, Julian, McNulty, Brandy, Park, Jimin, Rautiainen, Mikko, Rhie, Arang, Roelofs, Dick, Schneiders, Harrie, Vrijenhoek, Ilse, Nijbroek, Koen, Nordesjo, Olle, Nurk, Sergey, Vella, Mike, Lawrence, Katherine R, Ware, Doreen, Schatz, Michael C, Garrison, Erik, Huang, Sanwen, McCombie, William Richard, Miga, Karen H, Wittenberg, Alexander HJ, Phillippy, Adam M (November 2024) Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. Genome Research. ISSN 1088-9051 (Public Dataset)

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Kotagama, Kasuen, Grimme, Acadia L, Braviner, Leah, Yang, Bing, Sakhawala, Rima M, Yu, Guoyun, Benner, Lars Kristian, Joshua-Tor, Leemor, McJunkin, Katherine (March 2024) Catalytic residues of microRNA Argonautes play a modest role in microRNA star strand destabilization in C. elegans. Nucleic Acids Research (NAR). gkae170. ISSN 0305-1048 (Public Dataset)

Kotagama, Kasuen, Grimme, Acadia L, Braviner, Leah, Yang, Bing, Sakhawala, Rima M, Yu, Guoyun, Benner, Lars Kristian, Joshua-Tor, Leemor, McJunkin, Katherine (January 2024) The catalytic activity of microRNA Argonautes plays a modest role in microRNA star strand destabilization in C. elegans. bioRxiv. (Submitted)

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Seo, Myeong-Gyun, Lim, Yoonseo, Hendelman, Anat, Robitaille, Gina, Beak, Hong Kwan, Hong, Woo-Jong, Park, Soon Ju, Lippman, Zachary B, Park, Young-Joon, Kwon, Choon-Tak (June 2024) Evolutionary conservation of receptor compensation for stem cell homeostasis in Solanaceae plants. Horticulture Research, 11 (6). uhae126. ISSN 2662-6810 (Public Dataset)

Serio, Ryan N, Scheben, Armin, Lu, Billy, Gargiulo, Domenic V, Patruno, Lucrezia, Buckholtz, Caroline L, Chaffee, Ryan J, Jibilian, Megan C, Persaud, Steven G, Staklinski, Stephen J, Hassett, Rebecca, Brault, Lise M, Ramazzotti, Daniele, Barbieri, Christopher E, Siepel, Adam C, Nowak, Dawid G (July 2024) Clonal Lineage Tracing with Somatic Delivery of Recordable Barcodes Reveals Migration Histories of Metastatic Prostate Cancer. Cancer Discovery. ISSN 2159-8274

Shen, Xiaomeng, Liu, Lei, Tran, Thu, Ning, Qiang, Li, Manfei, Huang, Liangliang, Zhao, Ran, Li, Yunfu, Qing, Xiangyu, Jackson, David, Bai, Yan, Song, Weibin, Lai, Jinsheng, Zhang, Zuxin, Zhao, Haiming (September 2024) KRN5b regulates maize kernel row number through mediating phosphoinositol signalling. Plant Biotechnology Journal. ISSN 1467-7652 (Public Dataset)

Shimada, Atsushi, Cahn, Jonathan, Ernst, Evan, Lynn, Jason, Grimanelli, Daniel, Henderson, Ian, Kakutani, Tetsuji, Martienssen, Robert A (September 2024) Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. Nature Plants. ISSN 2055-0278 (Public Dataset)

Shuvaev, Sergey, Lachi, Divyansha, Koulakov, Alexei, Zador, Anthony (September 2024) Encoding innate ability through a genomic bottleneck. Proceedings of the National Academy of Sciences of the United States of America, 121 (38). e2409160121. ISSN 0027-8424

Sokirniy, Ivan, Inam, Haider, Tomaszkiewicz, Marta, Reynolds, Joshua, McCandlish, David, Pritchard, Justin (September 2024) A side-by-side comparison of variant function measurements using deep mutational scanning and base editing. bioRxiv. ISSN 2692-8205 (Submitted)

Song, Dongyan, Cen, Yuxin, Qian, Zhe, Wu, Xiaoli S, Rivera, Keith, Wee, Tse-Luen, Demerdash, Osama E, Chang, Kenneth, Pappin, Darryl, Vakoc, Christopher R, Tonks, Nicholas K (November 2024) PTPN23-dependent ESCRT machinery functions as a cell death checkpoint. Nature Communications, 15 (1). p. 10364. ISSN 2041-1723 (Public Dataset)

Soula, Mariluz, Unlu, Gokhan, Welch, Rachel, Chudnovskiy, Aleksey, Uygur, Beste, Shah, Vyom, Alwaseem, Hanan, Bunk, Paul, Subramanyam, Vishvak, Yeh, Hsi-Wen, Khan, Artem, Heissel, Søren, Goodarzi, Hani, Victora, Gabriel D, Beyaz, Semir, Birsoy, Kıvanç (August 2024) Glycosphingolipid synthesis mediates immune evasion in KRAS-driven cancer. Nature. ISSN 0028-0836 (Public Dataset)

Stern, Shani, Zhang, Lei, Wang, Meiyan, Wright, Rebecca, Rosh, Idan, Hussein, Yara, Stern, Tchelet, Choudhary, Ashwani, Tripathi, Utkarsh, Reed, Patrick, Sadis, Hagit, Nayak, Ritu, Shemen, Aviram, Agarwal, Karishma, Cordeiro, Diogo, Peles, David, Hang, Yuqing, Mendes, Ana PD, Baul, Tithi D, Roth, Julien G, Coorapati, Shashank, Boks, Marco P, McCombie, W Richard, Hulshoff Pol, Hilleke, Brennand, Kristen J, Réthelyi, János M, Kahn, René S, Marchetto, Maria C, Gage, Fred H (May 2024) Monozygotic twins discordant for schizophrenia differ in maturation and synaptic transmission. Molecular Psychiatry. ISSN 1359-4184 (Public Dataset)

Stillman, Bruce (June 2024) Establishing a biochemical understanding of the initiation of chromosome replication in bacteria. Proceedings of the National Academy of Sciences of the United States of America, 121 (23). e2400667121. ISSN 0027-8424

Sun, Mengyi, Stoltzfus, Arlin, McCandlish, David M (October 2024) A fitness distribution law for amino-acid replacements. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Sun, Simón ED, Levenstein, Daniel, Li, Boxing, Mandelberg, Nataniel, Chenouard, Nicolas, Suutari, Benjamin S, Sanchez, Sandrine, Tian, Guoling, Rinzel, John, Buzsáki, György, Tsien, Richard W (March 2024) Synaptic homeostasis transiently leverages Hebbian mechanisms for a multiphasic response to inactivity. Cell Reports, 43 (4). p. 113839. ISSN 2211-1247 (Public Dataset)

Sun, Yonghao, Dong, Liang, Kang, Lu, Zhong, Wanshun, Jackson, David, Yang, Fang (June 2024) Progressive meristem and single-cell transcriptomes reveal the regulatory mechanisms underlying maize inflorescence development and sex differentiation. Molecular Plant, 17 (7). pp. 1019-1037. ISSN 1674-2052 (Public Dataset)

Sussillo, David, Kaifosh, Patrick, Reardon, Thomas (February 2024) A generic noninvasive neuromotor interface for human-computer interaction. bioRxiv. (Submitted)

Swamynathan, Manojit, Mathew, Grinu, Aziz, Andrei, Gordon, Chris, Hillowe, Andrew, Wang, Hehe, Jhaveri, Aashna, Kendall, Jude, Cox, Hilary, Giarrizzo, Michael, Azabdaftari, Gissou, Rizzo, Robert C, Diermeier, Sarah D, Ojima, Iwao, Bialkowska, Agnieszka B, Kaczocha, Martin, Trotman, Lloyd C (2024) FABP5 Inhibition against PTEN-Mutant Therapy Resistant Prostate Cancer. Cancers, 16 (1). p. 60. ISSN 2072-6694

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Swentowsky, Kyle W (March 2024) Spud Buds: StAST1 antagonizes potato tuber development by suppressing the alternative Tuberization Activation Complex (aTAC). Plant Physiology. kiae180. ISSN 0032-0889

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Szelenyi, Eric R, Fisenne, Danielle, Knox, Joseph E, Harris, Julie A, Gornet, James A, Palaniswamy, Ramesh, Kim, Yongsoo, Venkataraju, Kannan Umadevi, Osten, Pavel (April 2024) Distributed X chromosome inactivation in brain circuitry is associated with X-linked disease penetrance of behavior. Cell Reports, 43 (4). p. 114068. ISSN 2211-1247

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Tang, Ziqi (April 2024) Exploring the Representational Power of Genomic Deep Learning Models. PhD thesis, Cold Spring Harbor Laboratory.

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Thompson, Mike, Martin, Mariano, Olmo, Trinidad Sanmartin, Rajesh, Chandana, Koo, Peter, Bolognesi, Benedetta, Lehner, Ben (July 2024) Interpretably deep learning amyloid nucleation by massive experimental quantification of random sequences. bioRxiv. (Submitted)

Throesch, Benjamin T, Bin Imtiaz, Muhammad Khadeesh, Muñoz-Castañeda, Rodrigo, Sakurai, Masahiro, Hartzell, Andrea L, James, Kiely N, Rodriguez, Alberto R, Martin, Greg, Lippi, Giordano, Kupriyanov, Sergey, Wu, Zhuhao, Osten, Pavel, Izpisua Belmonte, Juan Carlos, Wu, Jun, Baldwin, Kristin K (April 2024) Functional sensory circuits built from neurons of two species. Cell, 187 (9). 2143-2157.e15. ISSN 0092-8674

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Tollkuhn, Jessica (May 2024) Nuclear receptors - studying genes to understand hormones. Nature Reviews Genetics. ISSN 1471-0056

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Tonelli, Claudia, Yordanov, Georgi N, Hao, Yuan, Deschênes, Astrid, Hinds, Juliene, Belleau, Pascal, Klingbeil, Olaf, Brosnan, Erin, Doshi, Abhishek, Park, Youngkyu, Hruban, Ralph H, Vakoc, Christopher R, Dobin, Alexander, Preall, Jonathan, Tuveson, David A (January 2024) A mucus production programme promotes classical pancreatic ductal adenocarcinoma. Gut. ISSN 0017-5749

Toneyan, Shushan (May 2024) Evaluating and interpreting genomic insights from sequence-based deep learning for regulatory genomics. PhD thesis, Cold Spring Harbor Laboratory.

Toneyan, Shushan, Koo, Peter K (September 2024) Interpreting cis-regulatory interactions from large-scale deep neural networks. Nature Genetics. ISSN 1546-1718 (Public Dataset)

Tran, Thu M, Billakurthi, Kumari (May 2024) Tomato FW2.2/CNR might regulate fruit size via plasmodesmata callose deposition. Plant Physiology. kiae251. ISSN 0032-0889

Tran, Thu M, Robil, Janlo M (October 2024) Evolution of C4 photosynthesis: A lesson from the diverse photosynthesis genus neurachne. Plant Physiology. kiae523. ISSN 0032-0889

Tran, Thu M, Swentowsky, Kyle W (May 2024) Trehalose or Not-Trehalose: The Question of Direct vs. Indirect Transcriptional Responses to the sugar trehalose-6-phosphate. Plant Physiology. kiae306. ISSN 0032-0889

Tuveson, David, Allen, Peter (November 2024) The evolving role for surgery in pancreatic cancer. Carcinogenesis. ISSN 0143-3334

Tuveson, David, Tonelli, Claudia, Deschenes, Astrid, Gaeth, Victoria, Jensen, Amanda, Vithlani, Nandan, Yao, Melissa, Zhao, Zhen, Park, Youngkyu (October 2024) Ductal pancreatic cancer interception by FGFR2 abrogation. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

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Verma, Richa, Jayakumar, Jaikishan, Folkerth, Rebecca, Manger, Paul R, Bota, Mihail, Majumder, Moitrayee, Pandurangan, Karthika, Savoia, Stephen, Karthik, Srinivasa, Kumarasami, Ramdayalan, Joseph, Jayaraj, Rohini, G, Vasudevan, Sudha, Srinivasan, Chitra, Lata, S, Kumar, E Harish, Rangasami, Rajeswaran, Kumutha, Jayaraman, Suresh, S, Šimić, Goran, Mitra, Partha P, Sivaprakasam, Mohanasankar (April 2024) Histological characterization and development of mesial surface sulci in the human brain at 13-15 gestational weeks through high-resolution histology. Journal of Comparative Neurology, 532 (4). e25612. ISSN 0021-9967

Vishwakarma, Dharmendra S, Moses, John E (July 2024) Benzene‐1,3‐disulfonyl fluoride and Benzene‐1,3,5‐trisulfonyl fluoride: Low‐Cost, Stable, and Selective Reagents for SuFEx‐Driven Deoxyazidation. Advanced Synthesis and Catalysis. ISSN 1615-4150

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Wang, Bo, Chougule, Kapeel, Jiao, Yinping, Olson, Andrew, Kumar, Vivek, Gladman, Nicholas, Huang, Jian, Llaca, Victor, Fengler, Kevin, Wei, Xuehong, Wang, Liya, Wang, Xiaofei, Regulski, Michael, Drenkow, Jorg, Gingeras, Thomas, Hayes, Chad, Armstrong, J Scott, Huang, Yinghua, Xin, Zhanguo, Ware, Doreen (September 2024) High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436. NAR Genomics and Bioinformatics, 6 (3). lqae097. ISSN 2631-9268 (Public Dataset)

Wang, Jinbiao, Zheng, Qi, Zhang, Ruizhong, Huang, Zhaoyu, Wu, Qingyu, Liu, Lei, Ning, Qiang, Jackson, David, Xu, Fang (September 2024) Heterozygous fasciated ear mutations improve yield traits in inbred and hybrid maize lines. Plant Physiology. kiae472. ISSN 0032-0889

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Xia, Ruobing, Chen, Xiaomo, Engel, Tatiana A, Moore, Tirin (February 2024) Common and distinct neural mechanisms of attention. Trends in Cognitive Sciences. ISSN 1364-6613

Xiang, Xiyan, Bhowmick, Krishanu, Shetty, Kirti, Ohshiro, Kazufumi, Yang, Xiaochun, Wong, Linda L, Yu, Herbert, Latham, Patricia S, Satapathy, Sanjaya K, Brennan, Christina, Dima, Richard J, Chambwe, Nyasha, Sharifova, Gulru, Cacaj, Fellanza, John, Sahara, Crawford, James M, Huang, Hai, Dasarathy, Srinivasan, Krainer, Adrian R, He, Aiwu R, Amdur, Richard L, Mishra, Lopa (2024) Mechanistically based blood proteomic markers in the TGF-β pathway stratify risk of hepatocellular cancer in patients with cirrhosis. Genes and Cancer, 15. pp. 1-14. ISSN 1947-6019

Xu, Jihao, Roe, Jae-Seok, Lee, EunJung, Tonelli, Claudia, Somervile, Tim, Yao, Melissa, Milazzo, Joseph, Tiriac, Herve, Kolarzyk, Anna, Lee, Esak, Grem, Jeam, Lazenby, Audrey, Grunkemeyer, James, Hollingsworth, Michael, Grandgenett, Paul, Borowsky, Alexander, Park, Youngkyu, Vakoc, Christopher, Tuveson, David, Hwang, Chang-Il (January 2024) Engrailed-1 promotes pancreatic cancer metastasis. In: AACR Special Conference in Cancer Research: Pancreatic Cancer, 2023 Sep 27-30, Boston, Massachusetts.

Xue, Alexander, Huang, Yi-Fei, Siepel, Adam (2024) Inferring polygenic negative selection underlying an individual trait as a distribution of fitness effects (DFEs) from GWAS summary statistics. bioRxiv. (Submitted)

Y

Yang, Xiaochun, Bhowmick, Krishanu, Rao, Shuyun, Xiang, Xiyan, Ohshiro, Kazufumi, Amdur, Richard L, Hassan, Md Imtaiyaz, Mohammad, Taj, Crandall, Keith, Cifani, Paolo, Shetty, Kirti, Lyons, Scott K, Merrill, Joseph R, Vegesna, Anil K, John, Sahara, Latham, Patricia S, Crawford, James M, Mishra, Bibhuti, Dasarathy, Srinivasan, Wang, Xin Wei, Yu, Herbert, Wang, Zhanwei, Huang, Hai, Krainer, Adrian R, Mishra, Lopa (August 2024) Aldehydes alter TGF-β signaling and induce obesity and cancer. Cell Reports, 43 (9). p. 114676. ISSN 2211-1247 (Public Dataset)

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Yu, Yanhui, Li, Wenqiang, Liu, Yuanfang, Liu, Yanjun, Zhang, Qinzhi, Ouyang, Yidan, Ding, Wenya, Xue, Yu, Zou, Yilin, Yan, Junjun, Jia, Anqiang, Yan, Jiali, Hao, Xinfei, Gou, Yujie, Zhai, Zhaowei, Liu, Longyu, Zheng, Yang, Zhang, Bao, Xu, Jieting, Yang, Ning, Xiao, Yingjie, Zhuo, Lin, Lai, Zhibing, Yin, Ping, Liu, Hai-Jun, Fernie, Alisdair R, Jackson, David, Yan, Jianbing (November 2024) A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell. ISSN 0092-8674 (Public Dataset)

Yu, Yiyang, Muthukumar, Shivani, Koo, Peter K (January 2024) EvoAug-TF: Extending evolution-inspired data augmentations for genomic deep learning to TensorFlow. bioRxiv. (Submitted)

Yu, Yiyang, Muthukumar, Shivani, Koo, Peter K (February 2024) EvoAug-TF: Extending evolution-inspired data augmentations for genomic deep learning to TensorFlow. Bioinformatics. ISSN 1367-4811

Yuan, Li, Chen, Xiaoyin, Zhan, Huiqing, Henry, Gilbert L, Zador, Anthony M (September 2024) Massive multiplexing of spatially resolved single neuron projections with axonal BARseq. Nature Communications, 15 (1). p. 8371. ISSN 2041-1723 (Public Dataset)

Z

Zador, A (April 2024) The Connectome as a DNA Sequencing Problem. In: The Future of the Brain: Essays by the World's Leading Neuroscientists. Princeton University Press, pp. 40-49.

Zador, Anthony (February 2024) The origins of COSYNE: Building a community. The Transmitter. ISSN 2770-0976

Zeraati, R, Buendía, V, Engel, TA, Levina, A (April 2024) Topology-dependent coalescence controls scaling exponents in finite networks. Physical Review Research, 6 (2). ISSN 2643-1564

Zhai, Jingjing, Gokaslan, Aaron, Schiff, Yair, Berthel, Ana, Liu, Zong-Yan, Miller, Zachary R, Scheben, Armin, Stitzer, Michelle C, Romay, M Cinta, Buckler, Edward S, Kuleshov, Volodymyr (June 2024) Cross-species modeling of plant genomes at single nucleotide resolution using a pre-trained DNA language model. bioRxiv. (Public Dataset) (Submitted)

Zhang, Chao, Burger, R Michael (June 2024) Cholinergic modulation in the vertebrate auditory pathway. Frontiers in Cellular Neuroscience, 18. p. 1414484. ISSN 1662-5102

Zhang, Jialin, Westcott, Peter MK (June 2024) Claudin 18 turns up the heat in cancer. Immunity, 57 (6). pp. 1187-1189. ISSN 1074-7613

Zhang, Xu, Duan, Shoufu, Apostolou, Panagiota E, Wu, Xiaoping, Watanabe, Jun, Gallitto, Matthew, Barron, Tara, Taylor, Kathryn R, Woo, Pamelyn J, Hua, Xu, Zhou, Hui, Wei, Hong-Jian, McQuillan, Nicholas, Kang, Kyung-Don, Friedman, Gregory K, Canoll, Peter D, Chang, Kenneth, Wu, Cheng-Chia, Hashizume, Rintaro, Vakoc, Christopher R, Monje, Michelle, McKhann, Guy M, Gogos, Joseph A, Zhang, Zhiguo (May 2024) CHD2 Regulates Neuron-glioma Interactions in Pediatric Glioma. Cancer Discovery. ISSN 2159-8274

Zhou, Jessica, Guruvayurappan, Karthik, Toneyan, Shushan, Chen, Hsiuyi V, Chen, Aaron R, Koo, Peter, McVicker, Graham (July 2024) Analysis of single-cell CRISPR perturbations indicates that enhancers act multiplicatively and provides limited evidence for epistatic-like interactions. bioRxiv. (Public Dataset) (Submitted)

Zhou, Jessica, Rizzo, Kaeli, Tang, Ziqi, Koo, Peter K (November 2024) Uncertainty-aware genomic deep learning with knowledge distillation. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Zhou, Jessica L, Guruvayurappan, Karthik, Toneyan, Shushan, Chen, Hsiuyi V, Chen, Aaron R, Koo, Peter, McVicker, Graham (October 2024) Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively. Cell Genomics. p. 100672. ISSN 2666-979X (Public Dataset)

Zhou, Yong, Kathiresan, Nagarajan, Yu, Zhichao, Rivera, Luis F, Yang, Yujian, Thimma, Manjula, Manickam, Keerthana, Chebotarov, Dmytro, Mauleon, Ramil, Chougule, Kapeel, Wei, Sharon, Gao, Tingting, Green, Carl D, Zuccolo, Andrea, Xie, Weibo, Ware, Doreen, Zhang, Jianwei, McNally, Kenneth L, Wing, Rod A (January 2024) A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset. BMC Biology, 22 (1). p. 13. ISSN 1741-7007

Ziyi, Mo (January 2024) Scalable and robust deep-learning methods power evolutionary-genetic studies of biobank-scale population genomic data. PhD thesis, Cold Spring Harbor Laboratory.

Zubiete-Franco, Imanol, Tonks, Nicholas K (September 2024) Famotidine increases cellular phospho-tyrosine levels. Biochemical and Biophysical Research Communications, 734. p. 150763. ISSN 0006-291X

This list was generated on Mon Dec 2 20:56:48 2024 EST.