Items where Subject is "animal behavior"

Paper

Abbatemarco, Simona, Bondaz, Alexandra, Schwager, Francoise, Wang, Jing, Hammell, Christopher M, Gotta, Monica (October 2021) PQN-59 and GTBP-1 contribute to stress granule formation but are not essential for their assembly in C. elegans embryos. Journal of Cell Science. ISSN 0021-9533

Aguado, Brian A, Jeffries, Daniel L, Jordan-Young, Rebecca, Klein, Sabra L, Lett, Elle, Stachenfeld, Nina, Tollkuhn, Jessica, Xu, Xiaohong (March 2024) The future of sex and gender in research. Cell, 187 (6). pp. 1354-1357. ISSN 0092-8674

Aizenman, C. D., Akerman, C. J., Jensen, K. R., Cline, H. T. (August 2003) Visually driven regulation of intrinsic neuronal excitability improves stimulus detection in vivo. Neuron, 39 (5). pp. 831-842. ISSN 0896-6273

Aizenman, C. D., Cline, H. T. (April 2007) Enhanced visual activity in vivo forms nascent synapses in the developing retinotectal projection. J Neurophysiol, 97 (4). pp. 2949-57. ISSN 0022-3077 (Print)

Albeanu, D. F., Provost, A. C., Agarwal, P., Soucy, E. R., Zak, J. D., Murthy, V. N. (November 2018) Olfactory marker protein (OMP) regulates formation and refinement of the olfactory glomerular map. Nat Commun, 9 (1). p. 5073. ISSN 2041-1723

Albert, F. W., Hodges, E., Jensen, J. D., Besnier, F., Xuan, Z. Y., Rooks, M., Bhattacharjee, A., Brizuela, L., Good, J. M., Green, R. E., Burbano, H. A., Plyusnina, I. Z., Trut, L., Andersson, L., Schoneberg, T., Carlborg, O., Hannon, G. J., Paabo, S. (September 2011) Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity, 107 (3). pp. 205-214. ISSN 0018-067X

Alia-Klein, N., Goldstein, R. Z., Kriplani, A., Logan, J., Tomasi, D., Williams, B., Telang, F., Shumay, E., Biegon, A., Craig, I. W., Henn, F., Wang, G. J., Volkow, N. D., Fowler, J. S. (May 2008) Brain monoamine oxidase A activity predicts trait aggression. J Neurosci, 28 (19). pp. 5099-104. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Allman, J. M., Hakeem, A., Erwin, J. M., Nimchinsky, E., Hof, P. (2001) The anterior cingulate cortex - The evolution of an interface between emotion and cognition. Annals of the New York Academy of Sciences, 935. pp. 107-117. ISSN 0077-8923

Alves, Cristiane S, Nogueira, Fabio TS (June 2021) Plant Small RNA World Growing Bigger: tRNA-Derived Fragments, Longstanding Players in Regulatory Processes. Frontiers in Molecular Biosciences, 8. ISSN 2296-889X

Azevedo, H., Ferreira, M., Mascarello, A., Osten, P., Werneck Guimaraes, C. R. (December 2019) The serotonergic and alpha-1 adrenergic receptor modulator ACH-000029 ameliorates anxiety-like behavior in a post-traumatic stress disorder model. Neuropharmacology, 164. p. 107912. ISSN 0028-3908

Baker, P. M., Jhou, T., Li, B., Matsumoto, M., Mizumori, S. J., Stephenson-Jones, M., Vicentic, A. (November 2016) The Lateral Habenula Circuitry: Reward Processing and Cognitive Control. J Neurosci, 36 (45). pp. 11482-11488. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Banerjee, Arkarup, Phelps, Steven M, Long, Michael A (March 2019) Singing Mice. Current Biology, 29 (6). R190-R191. ISSN 0960-9822

Banerjee, Arkarup, Vallentin, Daniela (March 2022) Convergent behavioral strategies and neural computations during vocal turn-taking across diverse species. Current Opinion in Neurobiology, 73. p. 102529. ISSN 0959-4388

Banta, Arthur Mangun (May 1913) Experiments on the light and tactile reactions of a cave variety and an open water variety of an amphipod species (Abstract). Proceedings of the Society for Experimental Biology and Medicine, 10 (5). p. 192.

Banta, Arthur Mangun (1925) A thelytokous race of Cladocera in which pseudo-sexual reproduction occurs. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 11 (1/2). pp. 28-41.

Banta, Arthur Mangun, Brown, Leland A. (December 1924) Rate of metabolism and sex control in Cladocera. The Anatomical Record, 29. p. 147.

Banta, Arthur Mangun, Satina, Sophia Alexandrovna (1925) A biochemical reaction associated with sex in Cladocera. Proceedings of the Society for Experimental Biology and Medicine, 22. pp. 466-467.

Barrot, M., Olivier, J. D. A., Perrotti, L. I., DiLeone, R. J., Berton, O., Eisch, A. J., Impey, S., Storm, D. R., Neve, R. L., Yin, J. C., Zachariou, V., Nestler, E. J. (August 2002) CREB activity in the nucleus accumbens shell controls gating of behavioral responses to emotional stimuli. Proceedings of the National Academy of Sciences of the United States of America, 99 (17). pp. 11435-11440. ISSN 0027-8424

Bast, Walter Germán, Albeanu, Dinu F (March 2022) Mapping odorant receptors to their glomeruli. Nature Neuroscience. ISSN 1097-6256

Berger, K. H., Kong, E. C., Dubnau, J., Tully, T., Moore, M. S., Heberlein, U. (June 2006) Ethanol-responsive behaviors & learning and memory-shared mechanisms? Alcoholism-Clinical and Experimental Research, 30 (6). 261A-261A. ISSN 0145-6008

Beshel, J., Zhong, Y. (September 2015) Alterations in Brain-derived Leptin-homolog Unpaired 1 Lead to Obesity Phenotypes in Drosophila through Regulation of Food Odor Value Signaling. Chemical Senses, 40 (7). pp. 549-550. ISSN 0379-864X

Beshel, J., Zhong, Y. (October 2013) Graded Encoding of Food Odor Value in the Drosophila Brain. Journal of Neuroscience, 33 (40). pp. 15693-15704. ISSN 0270-6474

Bhattacharya, Nicholas, Thomas, Neil, Rao, Roshan, Dauparas, Justas, Koo, Peter K, Baker, David, Song, Yun S, Ovchinnikov, Sergey (2022) Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 27. pp. 34-45. ISSN 2335-6936

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (April 2023) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. bioRxiv. ISSN 2692-8205 (Submitted)

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael M, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, International Brain Laboratory, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (July 2024) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools. Nature Methods, 21 (7). pp. 1316-1328. ISSN 1548-7091

Bieler, M, Hussain, S, Daaland, ESB, Mirrione, M. M., Henn, F. A., Davanger, S (April 2021) Changes in concentrations of NMDA receptor subunit GluN2B, Arc and syntaxin-1 in dorsal hippocampus Schaffer collateral synapses in a rat learned helplessness model of depression. The Journal of Comparative Neurology, 529 (12). pp. 3194-3205.

Blake, D. T., Strata, F., Churchland, A. K., Merzenich, M. M. (July 2002) Neural correlates of instrumental learning in primary auditory cortex. Proceedings of the National Academy of Sciences of the United States of America, 99 (15). pp. 10114-10119. ISSN 00278424 (ISSN)

Blakeslee, Albert Francis, Satina, Sophia Alexandrovna (February 1934) Les plantes diffèrent-elles des animaux par des gamètes léthals? Comptes rendus des séances de l’Académie des Sciences, 198 (8). p. 768.

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Borniger, JC, Cissé, YM, Cantemir-Stone, CZ, Bolon, B, Nelson, RJ, Marsh, CB (May 2016) Corrigendum to "Behavioral abnormalities in mice lacking mesenchyme-specific Pten". Behavioural Brain Research, 305. p. 278. ISSN 0166-4328

Borniger, Jeremy C, de Lecea, Luis (2021) Peripheral Lipopolyssacharide Rapidly Silences REM-Active LHGABA Neurons. Frontiers in Behavioral Neuroscience, 15. p. 649428. ISSN 1662-5153

Bosc, M, Bucchioni, G, Ribot, B, Michelet, T (June 2021) Bypassing use-dependent plasticity in the primary motor cortex to preserve adaptive behavior. Scientific reports, 11 (1). p. 12102. ISSN 2045-2322

Brecht, M., Grinevich, V., Jin, T. E., Margrie, T., Osten, P. (December 2006) Cellular mechanisms of motor control in the vibrissal system. Pflügers Archiv - European Journal of Physiology, 453 (3). pp. 269-81. ISSN 0031-6768 (Print)

Brody, C. D., Hernandez, A., Zainos, A., Lemus, L., Romo, R. (December 2002) Analysing neuronal correlates of the comparison of two sequentially presented sensory stimuli. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 357 (1428). pp. 1843-1850. ISSN 0962-8436

Brody, C. D., Hernandez, A., Zainos, A., Romo, R. (November 2003) Timing and neural encoding of somatosensory parametric working memory in macaque prefrontal cortex. Cerebral Cortex, 13 (11). pp. 1196-1207. ISSN 1047-3211

Broughton, S. J., Tully, T., Greenspan, R. J. (January 2003) Conditioning deficits of CaM-kinase transgenic Drosophila melanogaster in a new excitatory courtship assay. Journal of Neurogenetics, 17 (1). pp. 91-102. ISSN 0167-7063

Bureau, I., von Saint Paul, F., Svoboda, K. (December 2006) Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS Biology, 4 (12). pp. 2361-2371. ISSN 1544-9173

Campbell, R. A. A., Turner, G. C. (January 2010) The mushroom body. Current Biology, 20 (1).

Carandini, M., Churchland, A. K. (July 2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16 (7). pp. 824-831. ISSN 1097-6256

Carlezon, W. A., Haile, C. N., Coopersmith, R., Hayashi, Y., Malinow, R., Neve, R. L., Nestler, E. J. (March 2000) Distinct sites of opiate reward and aversion within the midbrain identified using a herpes simplex virus vector expressing GluR1. Journal of Neuroscience, 20 (5). ISSN 0270-6474

Cazakoff, B. N., Lau, B. Y., Crump, K. L., Demmer, H. S., Shea, S. D. (March 2014) Broadly tuned and respiration-independent inhibition in the olfactory bulb of awake mice. Nature Neuroscience. ISSN 1097-6256

Chae, H. G., Kepple, D., Koulakov, A. A., Murthy, V. N., Albeanu, D. F. (September 2015) Mosaic representation of odors in the output layer of the mouse olfactory bulb. Chemical Senses, 40 (7). p. 564. ISSN 0379-864X

Chae, Honggoo, Banerjee, Arkarup, Dussauze, Marie, Albeanu, Dinu F (September 2022) Long-range functional loops in the mouse olfactory system and their roles in computing odor identity. Neuron. S0896-6273(22)00810. ISSN 0896-6273

Chen, Jerry L, Voigt, Fabian F, Javadzadeh, Mitra, Krueppel, Roland, Helmchen, Fritjof (May 2016) Long-range population dynamics of anatomically defined neocortical networks. eLife, 5. ISSN 2050-084X

Chourbaji, S., Hellweg, R., Brandis, D., Zorner, B., Zacher, C., Lang, U. E., Henn, F. A., Hortnagl, H., Gass, P. (February 2004) Mice with reduced brain-derived neurotrophic factor expression show decreased choline acetyltransferase activity, but regular brain monoamine levels and unaltered emotional behavior. Brain Res Mol Brain Res, 121 (1-2). pp. 28-36. ISSN 0169-328X (Print)0169-328X (Linking)

Churchland, A. K. (May 2011) Normalizing relations between the senses. Nature Neuroscience, 14 (6). pp. 672-3. ISSN 1097-6256

Churchland, A. K., Ditterich, J. (2012) New advances in understanding decisions among multiple alternatives. Current Opinion in Neurobiology. ISSN 0959-4388

Churchland, A. K., Gardner, J. L., Chou, I. H., Priebe, N. J., Lisberger, S. G. (March 2003) Directional anisotropies reveal a functional segregation of visual motion processing for perception and action. Neuron, 37 (6). pp. 1001-1011. ISSN 08966273 (ISSN)

Churchland, A. K., Huang, X., Lisberger, S. G. (January 2007) Responses of neurons in the medial superior temporal visual area to apparent motion stimuli in macaque monkeys. Journal of Neurophysiology, 97 (1). pp. 272-282. ISSN 00223077 (ISSN)

Churchland, A. K., Kiani, R., Shadlen, M. N. (2008) Decision-making with multiple alternatives. Nature Neuroscience, 11 (6). pp. 693-702. ISSN 10976256 (ISSN)

Churchland, A. K., Lisberger, S. G. (2005) Discharge properties of MST neurons that project to the frontal pursuit area in macaque monkeys. Journal of Neurophysiology, 94 (2). pp. 1084-1090. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (2002) Gain control in human smooth-pursuit eye movements. Journal of Neurophysiology, 87 (6). pp. 2936-2945. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (October 2005) Relationship between extraretinal component of firing rate and eye speed in area MST of Macaque monkeys. Journal of Neurophysiology, 94 (4). pp. 2416-2426. ISSN 00223077 (ISSN)

Churchland, Anne K., Kiani, Roozbeh (October 2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11. pp. 74-80. ISSN 2352-1546

Cohen, Yarden, Engel, Tatiana A, Langdon, Christopher, Lindsay, Grace W, Ott, Torben, Peters, Megan AK, Shine, James M, Breton-Provencher, Vincent, Ramaswamy, Srikanth (November 2022) Recent Advances at the Interface of Neuroscience and Artificial Neural Networks. The Journal of Neuroscience, 42 (45). pp. 8514-8523. ISSN 1529-2401

Corlett, P. R., Horga, G., Fletcher, P. C., Alderson-Day, B., Schmack, K., Powers, A. R. (December 2018) Hallucinations and Strong Priors. Trends in Cognitive Sciences, 23 (2). pp. 114-127. ISSN 13646613

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Ireland, Elise, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (May 2024) Mapping model units to visual neurons reveals population code for social behaviour. Nature. ISSN 0028-0836 (Public Dataset)

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (October 2023) One-to-one mapping between deep network units and real neurons uncovers a visual population code for social behavior. bioRxiv. (Public Dataset) (Submitted)

Cowley, Benjamin R, Snyder, Adam C, Acar, Katerina, Williamson, Ryan C, Yu, Byron M, Smith, Matthew A (November 2020) Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron, 108 (3). 551-567.e8. ISSN 0896-6273

Dalla, Christina, Jaric, Ivana, Pavlidi, Pavlina, Hodes, Georgia E, Kokras, Nikolaos, Bespalov, Anton, Kas, Martien J, Steckler, Thomas, Kabbaj, Mohamed, Würbel, Hanno, Marroco, Jordan, Tollkuhn, Jessica, Shansky, Rebecca, Bangasser, Debra, Becker, Jill B, McCarthy, Margaret, Ferland-Beckham, Chantelle (October 2023) Practical solutions for including Sex As a Biological Variable (SABV) in preclinical neuropsychopharmacological research. Journal of Neuroscience Methods. p. 110003. ISSN 0165-0270

Daruwalla, Kyle, Martin, Irene Nozal, Frankel, Andrew, Naglic, Diana, Ahmad, Zainab, Hou, Xun Helen (May 2024) A 3D whole-face movement analysis system to uncover underlying physiology in mice. bioRxiv. (Submitted)

Dasgupta, S., Sheehan, T. C., Stevens, C. F., Navlakha, S. (December 2018) A neural data structure for novelty detection. Proc Natl Acad Sci U S A, 115 (51). pp. 13093-13098. ISSN 0027-8424 (Public Dataset)

DeCoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (May 2007) Oscillations of local field potentials in the rat dorsal striatum during spontaneous and instructed behaviors. Journal of Neurophysiology, 97 (5). pp. 3800-3805. ISSN 0022-3077

DeWeese, M. R. (June 2000) An optimal preparation for studying optimization. Neuron, 26 (3). pp. 546-548. ISSN 0896-6273

DeWeese, M. R., Hromádka, T., Zador, A. M. (November 2005) Reliability and representational bandwidth in the auditory cortex. Neuron, 48 (3). pp. 479-88. ISSN 0896-6273 (Print)

Decoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (March 2007) Learning-related coordination of striatal and hippocampal theta rhythms during acquisition of a procedural maze task. Proc Natl Acad Sci U S A, 104 (13). pp. 5644-9. ISSN 0027-8424 (Print)

Deng, Hanfei, Xiao, Xiong, Yang, Tao, Ritola, Kimberly, Hantman, Adam, Li, Yulong, Huang, Z Josh, Li, Bo (December 2021) A genetically defined insula-brainstem circuit selectively controls motivational vigor. Cell. ISSN 0092-8674

Deregnaucourt, S., Mitra, P. P., Feher, O., Pytte, C., Tchernichovski, O. (February 2005) How sleep affects the developmental learning of bird song. Nature, 433 (7027). pp. 710-716. ISSN 0028-0836

Dhawale, A. K., Hagiwara, A., Bhalla, U. S., Murthy, V. N., Albeanu, D. F. (October 2010) Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nature Neuroscience, 13. pp. 1404-12. ISSN 1097-6256

Diamond, A., Churchland, A. K., Cruess, L., Kirkham, N. Z. (November 1999) Early developments in the ability to understand the relation between stimulus and reward. Developmental Psychology, 35 (6). pp. 1507-1517. ISSN 00121649 (ISSN)

Dong, Ao, He, Kaikai, Dudok, Barna, Farrell, Jordan S, Guan, Wuqiang, Liput, Daniel J, Puhl, Henry L, Cai, Ruyi, Wang, Huan, Duan, Jiali, Albarran, Eddy, Ding, Jun, Lovinger, David M, Li, Bo, Soltesz, Ivan, Li, Yulong (November 2021) A fluorescent sensor for spatiotemporally resolved imaging of endocannabinoid dynamics in vivo. Nature Biotechnology. ISSN 1087-0156

Dore, K., Pao, Y., Soria Lopez, J., Aronson, S., Zhan, H., Ghosh, S., Merrill, S., Zador, A. M., Malinow, R., Kebschull, J. M. (January 2020) SYNPLA, a method to identify synapses displaying plasticity after learning. Proc Natl Acad Sci U S A, 117 (6). pp. 3214-3219. ISSN 0027-8424 (Public Dataset)

Drugowitsch, J., Moreno-Bote, R., Churchland, A. K., Shadlen, M. N., Pouget, A. (March 2012) The Cost of Accumulating Evidence in Perceptual Decision Making. Journal of Neuroscience, 32 (11). pp. 3612-3628. ISSN 0270-6474

Dudok, Barna, Szoboszlay, Miklos, Paul, Anirban, Klein, Peter M, Liao, Zhenrui, Hwaun, Ernie, Szabo, Gergely G, Geiller, Tristan, Vancura, Bert, Wang, Bor-Shuen, McKenzie, Sam, Homidan, Jesslyn, Klaver, Lianne MF, English, Daniel F, Huang, Z Josh, Buzsáki, György, Losonczy, Attila, Soltesz, Ivan (October 2021) Recruitment and inhibitory action of hippocampal axo-axonic cells during behavior. Neuron. ISSN 0896-6273

Dura, J. M., Preat, T., Tully, T. (October 2007) Identification of linotte, a new gene affecting learning and memory in Drosophila melanogaster. Journal of Neurogenetics, 21 (4). pp. 307-320. ISSN 0167-7063

Dvorkin, Roman, Shea, Stephen D (February 2022) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior in mice. The Journal of Neuroscience. ISSN 0270-6474

Eban-Rothschild, Ada, Borniger, Jeremy C, Rothschild, Gideon, Giardino, William J, Morrow, Joshua G, de Lecea, Luis (March 2020) Arousal State-Dependent Alterations in VTA-GABAergic Neuronal Activity. eNeuro, 7 (2). ENEURO.0356-19.2020. ISSN 2373-2822

Elsayed, G. F., Lara, A. H., Kaufman, M. T., Churchland, M. M., Cunningham, J. P. (October 2016) Reorganization between preparatory and movement population responses in motor cortex. Nat Commun, 7. p. 13239. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Engel, T. A., Steinmetz, N. A. (October 2019) New perspectives on dimensionality and variability from large-scale cortical dynamics. Curr Opin Neurobiol, 58. pp. 181-190. ISSN 0959-4388

Evans, Llewellyn T., Abramson, Harold Alexander (1958) Lysergic acid diethylamide(LSD-25): XXV. Effect on social order of newts. Triturus v. viridescents (RAF). Journal of Psychology: Interdisciplinary and Applied, 45. pp. 153-169.

Fee, M. S., Mitra, P. P., Kleinfeld, D. (1997) Central versus peripheral determinants of patterned spike activity in rat vibrissa cortex during whisking. Journal of Neurophysiology, 78 (2). pp. 1144-1149. ISSN 00223077 (ISSN)

Fee, M. S., Shraiman, B., Pesaran, B., Mitra, P. P. (1998) The role of nonlinear dynamics of the syrinx in the vocalizations of a songbird. Nature, 395 (6697). pp. 67-71. ISSN 00280836 (ISSN)

Felsen, G., Dan, Y. (December 2005) A natural approach to studying vision. Nat Neurosci, 8 (12). pp. 1643-6. ISSN 1097-6256 (Print)

Felsen, G., Mainen, Z. F. (July 2012) Midbrain contributions to sensorimotor decision making. Journal of Neurophysiology, 108 (1). pp. 135-147. ISSN 0022-3077

Felsen, G., Mainen, Z. F. (October 2008) Neural substrates of sensory-guided locomotor decisions in the rat superior colliculus. Neuron, 60 (1). pp. 137-48.

Fendt, M., Lex, A., Falkai, P., Henn, F. A., Schmitt, A. (July 2008) Behavioural alterations in rats following neonatal hypoxia and effects of clozapine: implications for schizophrenia. Pharmacopsychiatry, 41 (4). pp. 138-45. ISSN 0176-3679 (Print)0176-3679 (Linking)

Fenton, André A, Hurtado, José R, Broek, Jantine AC, Park, EunHye, Mishra, Bud (August 2023) Do Place Cells Dream of Deceptive Moves in a Signaling Game? Neuroscience, 529. pp. 129-147. ISSN 0306-4522

Filipkowski, R. K., Rydz, M., Berdel, B., Morys, J., Kaczmarek, L. (March 2000) Tactile experience induces c-fos expression in rat barrel cortex. Learning & Memory, 7 (2). pp. 116-122. ISSN 1072-0502

Filipkowski, R. K., Rydz, M., Kaczmarek, L. (2001) Expression of c-Fos, Fos B, Jun B, and Zif268 transcription factor proteins in rat barrel cortex following apomorphine-evoked whisking behavior. Neuroscience, 106 (4). pp. 679-688. ISSN 0306-4522

Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)

Fu, Y., Tucciarone, J. M., Espinosa, J. S., Sheng, N., Darcy, D. P., Nicoll, R. A., Huang, Z. J., Stryker, M. P. (March 2014) A cortical circuit for gain control by behavioral state. Cell, 156 (6). pp. 1139-52. ISSN 0092-8674

Gakamsky, A., Oron, E., Valente, D., Mitra, P. P., Segal, D., Benjamini, Y., Golani, I. (October 2013) The Angular Interval between the Direction of Progression and Body Orientation in Normal, Alcohol- and Cocaine Treated Fruit Flies. PLoS ONE, 8 (10). ISSN 19326203 (ISSN)

Gegenhuber, B., Tollkuhn, J. (June 2019) Sex Differences in the Epigenome: A Cause or Consequence of Sexual Differentiation of the Brain? Genes (Basel), 10 (6). E432. ISSN 2073-4425 (Print)2073-4425

Gegenhuber, Bruno, Tollkuhn, Jessica (July 2022) Epigenetic Mechanisms of Brain Sexual Differentiation. Cold Spring Harbor Perspectives in Biology. a039099. ISSN 1943-0264

Genkin, Mikhail, Hughes, Owen, Engel, Tatiana A (October 2021) Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories. Nature Communications, 12 (1). p. 5986. ISSN 2041-1723

Ghosh, Sanchari, Zador, Anthony M (March 2021) Corticostriatal Plasticity Established by Initial Learning Persists after Behavioral Reversal. eNeuro, 8 (2). pp. 1-10. ISSN 2373-2822

Giaffar, Hamza, Shuvaev, Sergey, Rinberg, Dmitry, Koulakov, Alexei A (September 2024) The primacy model and the structure of olfactory space. PLoS Computational Biology, 20 (9). e1012379. ISSN 1553-734X (Public Dataset)

Giber, K., Diana, M. A., V, M. Plattner, Dugue, G. P., Bokor, H., Rousseau, C. V., Magloczky, Z., Havas, L., Hangya, B., Wildner, H., Zeilhofer, H. U., Dieudonne, S., Acsady, L. (February 2015) A subcortical inhibitory signal for behavioral arrest in the thalamus. Nature Neuroscience, 18. pp. 562-568. ISSN 1097-6256

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Zhou, C., Franconville, R., Vaughan, A. G., Robinett, C. C., Jayaraman, V., Baker, B. S. (September 2015) Central neural circuitry mediating courtship song perception in male. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)

de Gee, J.W., Tsetsos, K., Schwabe, L., Urai, A.E., McCormick, D., McGinley, M.J., Donner, T.H. (June 2020) Pupil-linked Phasic Arousal Predicts a Reduction of Choice Bias Across Species and Decision Domains. Elife, 9. e54014. ISSN 2050-084X

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

Book Section

Blair, H. T., Tinkelman, A., Moita, M. A. P., LeDoux, J. E. (2003) Associative plasticity in neurons of the lateral amygdala during auditory fear conditioning. In: Amygdala in Brain Function: Bacic and Clinical Approaches. Annals of the New York Academy of Sciences, 985 . New York Academy of Sciences, New York, pp. 485-487. ISBN 0077-8923

Churchland, A. K., Shadlen, M. N. (2007) Decision-Making and Vision. In: The New Encyclopedia of Neuroscience. Elsevier.

Deregnaucourt, S., Mitra, P. P., Feher, O., Maul, K. K., Lints, T. J., Tchernichovski, O. (2004) Song development: In search of the error-signal. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 364-376. ISBN 0077-8923

Pearlmutter, B. A., Zador, A. M. (2004) Monaural source separation using spectral cues. In: Independent Component Analysis and Blind Signal Separation. Lecture Notes in Computer Science, 3195 . Springer-Verlag Berlin, Berlin, pp. 478-485. ISBN 0302-9743

Shadlen, M. N., Hanks, T. D., Churchland, A. K., Kiani, R., Yang, T. J. (2007) The Speed and Accuracy of a Simple Perceptual Decision: A Mathematical Primer. In: Bayesian Brain: Probabilistic Approaches to Neural Coding (Computational Neuroscience). M. I. T. Press, Cambridge, MA, pp. 209-238. ISBN ISBN-10: 0-262-51601-2

Tchernichovski, O., Lints, T. J., Deregnaucourt, S., Cimenser, A., Mitra, P. P. (2004) Studying the song development process rationale and methods. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 348-363. ISBN 0077-8923

Monograph

Schwartz, Benjamin, Safir, Shelley Ray (June 1915) The natural history and behavior of the fiddler crab. Project Report. The Brooklyn Institute of Arts and Sciences, Brooklyn, NY.

Wilbrecht, L., Kirn, J. R. (June 2004) Neuron addition and loss in the song system: regulation and function. Documentation. NY Academy of Sciences.

Conference or Workshop Item

Andrews, P. , Saar, S., Wang, H., Valente, D., Serkhane, J., Tchernichovsky, O., Golani, I., Mitra, P. P. (October 2006) Multimedia signal processing for behavioral quantification in neuroscience. In: International Multimedia Conference: Proceedings of the 14th annual ACM international conference on Multimedia , Santa Barbara, CA.

Bargmann, C., Callaway, E., Chklovskii, D. (March 2010) NEURONAL CIRCUITS. In: 2010 Meeting of Neuronal Circuits, March 10–March 13, 2010, Cold Spring Harbor Laboratory.

Bast, Walter G, Aghamohammadi, Cina, Gupta, Priyanka, Engel, Tatiana A, Albeanu, Dinu F (2023) An optogenetic stimulation approach to quantify the contribution of individual glomeruli to olfactory percepts. In: UNSPECIFIED.

Bonda, David, Wulf, Michael, Kepecs, Adam (April 2020) A Functional Circuit for Executive Control. In: Annual Scientific Meeting of the American-Association-of-Neurological-Surgeons (AANS).

Churchland, A. K. (May 2013) Noise in decision making. In: European Science Foundation Exploratory Workshop , May 29th 2013, Sant Fruitós del Bages, Spain. (Unpublished)

Sheppard, J. P., Ryan, M.B., Churchland, A. K. (November 2013) Optogenetic stimulation of visual inputs to posterior parietal cortex biases choice behavior of rats on a multisensory decision task. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Trejo, Diego E Hernandez, Ciuparu, Andrei, da Silva, Pedro Garcia, Velasquez, Cristina M, Rebouillat, Benjamin, Gross, Michael, Davis, Martin B, Mureayan, Raul C, Albeanu, Dinu F (2023) Cortical-bulbar Feedback Supports Behavioral Flexibility During Rule Reversal. In: UNSPECIFIED.

Thesis

Chen, B. L. (2007) Neuronal Network of C. elegans: from Anatomy to Behavior. PhD thesis, Cold Spring Harbor Laboratory.

Dussauze, Marie (February 2024) Sensorimotor neural representations in the olfactory cortex. PhD thesis, Cold Spring Harbor Laboratory.

Feierstein, C. E. (February 2007) Representation of goals, actions and outcomes in rat orbitofrontal cortex. PhD thesis, Cold Spring Harbor Laboratory.

Lakhani, Asad A (March 2023) The Role of Recurrently Observed Aneuploidy in Tumorigenesis. PhD thesis, Cold Spring Harbor Laboratory.

Pagliaro, Alexa H (May 2023) A disrupted parvalbumin network state impairs maternal behavior in a mouse model of Rett Syndrome. PhD thesis, Cold Spring Harbor Laboratory.

Pai, S. S. (January 2010) Neuroanatomical Localization of Timing-Specific Brain Loci in the Rat. PhD thesis, Cold Spring Harbor Laboratory.

Sanders, Joshua (January 2014) A computational framework for understanding decision confidence. PhD thesis, Cold Spring Harbor Laboratory.

Wang, Julia Huiming (June 2023) Interpretable Brain State Manifold for Characterizing Heterogeneity. PhD thesis, Cold Spring Harbor Laboratory.

Zhang, Anqi (July 2020) Representations in Rodent Primary Visual Cortex During Visual Discrimination. PhD thesis, Cold Spring Harbor.

Video

Albeanu, D. F. (November 2012) Talk from Florin Albeanu at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Churchland, A. K. (November 2011) Talk from Anne Churchland at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Li, B. (November 2012) Talk from Bo Li at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Shea, S. D. (November 2011) Talk from Stephen Shea at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Turner, G. C. (November 2012) Talk from Glenn Turner at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Zador, A. M. (November 2012) Talk from Tony Zador at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Dataset

Juavinett, A. L., Bekheet, G., Churchland, A. K. (2018) 3D design files for chronically-implanted Neuropixels probes from "Juavinett, Ashley and Bekheet, George and Churchland, Anne K. (2018) bioRxiv". [Dataset] (Unpublished)

Sheppard, J. P., Raposo, D., Churchland, A. K. (August 2013) Tutorial and data for "Sheppard, J. P. and Raposo, D. and Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6).". [Dataset]