Items where Subject is "animal behavior"

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Abbatemarco, Simona, Bondaz, Alexandra, Schwager, Francoise, Wang, Jing, Hammell, Christopher M, Gotta, Monica (October 2021) PQN-59 and GTBP-1 contribute to stress granule formation but are not essential for their assembly in C. elegans embryos. Journal of Cell Science. ISSN 0021-9533

Aguado, Brian A, Jeffries, Daniel L, Jordan-Young, Rebecca, Klein, Sabra L, Lett, Elle, Stachenfeld, Nina, Tollkuhn, Jessica, Xu, Xiaohong (March 2024) The future of sex and gender in research. Cell, 187 (6). pp. 1354-1357. ISSN 0092-8674

Aizenman, C. D., Akerman, C. J., Jensen, K. R., Cline, H. T. (August 2003) Visually driven regulation of intrinsic neuronal excitability improves stimulus detection in vivo. Neuron, 39 (5). pp. 831-842. ISSN 0896-6273

Aizenman, C. D., Cline, H. T. (April 2007) Enhanced visual activity in vivo forms nascent synapses in the developing retinotectal projection. J Neurophysiol, 97 (4). pp. 2949-57. ISSN 0022-3077 (Print)

Albeanu, D. F. (November 2012) Talk from Florin Albeanu at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Albeanu, D. F., Provost, A. C., Agarwal, P., Soucy, E. R., Zak, J. D., Murthy, V. N. (November 2018) Olfactory marker protein (OMP) regulates formation and refinement of the olfactory glomerular map. Nat Commun, 9 (1). p. 5073. ISSN 2041-1723

Albert, F. W., Hodges, E., Jensen, J. D., Besnier, F., Xuan, Z. Y., Rooks, M., Bhattacharjee, A., Brizuela, L., Good, J. M., Green, R. E., Burbano, H. A., Plyusnina, I. Z., Trut, L., Andersson, L., Schoneberg, T., Carlborg, O., Hannon, G. J., Paabo, S. (September 2011) Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity, 107 (3). pp. 205-214. ISSN 0018-067X

Alia-Klein, N., Goldstein, R. Z., Kriplani, A., Logan, J., Tomasi, D., Williams, B., Telang, F., Shumay, E., Biegon, A., Craig, I. W., Henn, F., Wang, G. J., Volkow, N. D., Fowler, J. S. (May 2008) Brain monoamine oxidase A activity predicts trait aggression. J Neurosci, 28 (19). pp. 5099-104. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Allman, J. M., Hakeem, A., Erwin, J. M., Nimchinsky, E., Hof, P. (2001) The anterior cingulate cortex - The evolution of an interface between emotion and cognition. Annals of the New York Academy of Sciences, 935. pp. 107-117. ISSN 0077-8923

Alves, Cristiane S, Nogueira, Fabio TS (June 2021) Plant Small RNA World Growing Bigger: tRNA-Derived Fragments, Longstanding Players in Regulatory Processes. Frontiers in Molecular Biosciences, 8. ISSN 2296-889X

Andrews, P. , Saar, S., Wang, H., Valente, D., Serkhane, J., Tchernichovsky, O., Golani, I., Mitra, P. P. (October 2006) Multimedia signal processing for behavioral quantification in neuroscience. In: International Multimedia Conference: Proceedings of the 14th annual ACM international conference on Multimedia , Santa Barbara, CA.

Azevedo, H., Ferreira, M., Mascarello, A., Osten, P., Werneck Guimaraes, C. R. (December 2019) The serotonergic and alpha-1 adrenergic receptor modulator ACH-000029 ameliorates anxiety-like behavior in a post-traumatic stress disorder model. Neuropharmacology, 164. p. 107912. ISSN 0028-3908

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Baker, P. M., Jhou, T., Li, B., Matsumoto, M., Mizumori, S. J., Stephenson-Jones, M., Vicentic, A. (November 2016) The Lateral Habenula Circuitry: Reward Processing and Cognitive Control. J Neurosci, 36 (45). pp. 11482-11488. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Banerjee, Arkarup, Phelps, Steven M, Long, Michael A (March 2019) Singing Mice. Current Biology, 29 (6). R190-R191. ISSN 0960-9822

Banerjee, Arkarup, Vallentin, Daniela (March 2022) Convergent behavioral strategies and neural computations during vocal turn-taking across diverse species. Current Opinion in Neurobiology, 73. p. 102529. ISSN 0959-4388

Banta, Arthur Mangun (May 1913) Experiments on the light and tactile reactions of a cave variety and an open water variety of an amphipod species (Abstract). Proceedings of the Society for Experimental Biology and Medicine, 10 (5). p. 192.

Banta, Arthur Mangun (1925) A thelytokous race of Cladocera in which pseudo-sexual reproduction occurs. Zeitschrift für induktive Abstammmungs und Vererbungslehre, 11 (1/2). pp. 28-41.

Banta, Arthur Mangun, Brown, Leland A. (December 1924) Rate of metabolism and sex control in Cladocera. The Anatomical Record, 29. p. 147.

Banta, Arthur Mangun, Satina, Sophia Alexandrovna (1925) A biochemical reaction associated with sex in Cladocera. Proceedings of the Society for Experimental Biology and Medicine, 22. pp. 466-467.

Bargmann, C., Callaway, E., Chklovskii, D. (March 2010) NEURONAL CIRCUITS. In: 2010 Meeting of Neuronal Circuits, March 10–March 13, 2010, Cold Spring Harbor Laboratory.

Barrot, M., Olivier, J. D. A., Perrotti, L. I., DiLeone, R. J., Berton, O., Eisch, A. J., Impey, S., Storm, D. R., Neve, R. L., Yin, J. C., Zachariou, V., Nestler, E. J. (August 2002) CREB activity in the nucleus accumbens shell controls gating of behavioral responses to emotional stimuli. Proceedings of the National Academy of Sciences of the United States of America, 99 (17). pp. 11435-11440. ISSN 0027-8424

Bast, Walter G, Aghamohammadi, Cina, Gupta, Priyanka, Engel, Tatiana A, Albeanu, Dinu F (2023) An optogenetic stimulation approach to quantify the contribution of individual glomeruli to olfactory percepts. In: UNSPECIFIED.

Bast, Walter Germán, Albeanu, Dinu F (March 2022) Mapping odorant receptors to their glomeruli. Nature Neuroscience. ISSN 1097-6256

Berger, K. H., Kong, E. C., Dubnau, J., Tully, T., Moore, M. S., Heberlein, U. (June 2006) Ethanol-responsive behaviors & learning and memory-shared mechanisms? Alcoholism-Clinical and Experimental Research, 30 (6). 261A-261A. ISSN 0145-6008

Beshel, J., Zhong, Y. (September 2015) Alterations in Brain-derived Leptin-homolog Unpaired 1 Lead to Obesity Phenotypes in Drosophila through Regulation of Food Odor Value Signaling. Chemical Senses, 40 (7). pp. 549-550. ISSN 0379-864X

Beshel, J., Zhong, Y. (October 2013) Graded Encoding of Food Odor Value in the Drosophila Brain. Journal of Neuroscience, 33 (40). pp. 15693-15704. ISSN 0270-6474

Bhattacharya, Nicholas, Thomas, Neil, Rao, Roshan, Dauparas, Justas, Koo, Peter K, Baker, David, Song, Yun S, Ovchinnikov, Sergey (2022) Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 27. pp. 34-45. ISSN 2335-6936

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (April 2023) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. bioRxiv. ISSN 2692-8205 (Submitted)

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael M, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, International Brain Laboratory, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (July 2024) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools. Nature Methods, 21 (7). pp. 1316-1328. ISSN 1548-7091

Bieler, M, Hussain, S, Daaland, ESB, Mirrione, M. M., Henn, F. A., Davanger, S (April 2021) Changes in concentrations of NMDA receptor subunit GluN2B, Arc and syntaxin-1 in dorsal hippocampus Schaffer collateral synapses in a rat learned helplessness model of depression. The Journal of Comparative Neurology, 529 (12). pp. 3194-3205.

Blair, H. T., Tinkelman, A., Moita, M. A. P., LeDoux, J. E. (2003) Associative plasticity in neurons of the lateral amygdala during auditory fear conditioning. In: Amygdala in Brain Function: Bacic and Clinical Approaches. Annals of the New York Academy of Sciences, 985 . New York Academy of Sciences, New York, pp. 485-487. ISBN 0077-8923

Blake, D. T., Strata, F., Churchland, A. K., Merzenich, M. M. (July 2002) Neural correlates of instrumental learning in primary auditory cortex. Proceedings of the National Academy of Sciences of the United States of America, 99 (15). pp. 10114-10119. ISSN 00278424 (ISSN)

Blakeslee, Albert Francis, Satina, Sophia Alexandrovna (February 1934) Les plantes diffèrent-elles des animaux par des gamètes léthals? Comptes rendus des séances de l’Académie des Sciences, 198 (8). p. 768.

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Bonda, David, Wulf, Michael, Kepecs, Adam (April 2020) A Functional Circuit for Executive Control. In: Annual Scientific Meeting of the American-Association-of-Neurological-Surgeons (AANS).

Borniger, JC, Cissé, YM, Cantemir-Stone, CZ, Bolon, B, Nelson, RJ, Marsh, CB (May 2016) Corrigendum to "Behavioral abnormalities in mice lacking mesenchyme-specific Pten". Behavioural Brain Research, 305. p. 278. ISSN 0166-4328

Borniger, Jeremy C, de Lecea, Luis (2021) Peripheral Lipopolyssacharide Rapidly Silences REM-Active LHGABA Neurons. Frontiers in Behavioral Neuroscience, 15. p. 649428. ISSN 1662-5153

Bosc, M, Bucchioni, G, Ribot, B, Michelet, T (June 2021) Bypassing use-dependent plasticity in the primary motor cortex to preserve adaptive behavior. Scientific reports, 11 (1). p. 12102. ISSN 2045-2322

Brecht, M., Grinevich, V., Jin, T. E., Margrie, T., Osten, P. (December 2006) Cellular mechanisms of motor control in the vibrissal system. Pflügers Archiv - European Journal of Physiology, 453 (3). pp. 269-81. ISSN 0031-6768 (Print)

Brody, C. D., Hernandez, A., Zainos, A., Lemus, L., Romo, R. (December 2002) Analysing neuronal correlates of the comparison of two sequentially presented sensory stimuli. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 357 (1428). pp. 1843-1850. ISSN 0962-8436

Brody, C. D., Hernandez, A., Zainos, A., Romo, R. (November 2003) Timing and neural encoding of somatosensory parametric working memory in macaque prefrontal cortex. Cerebral Cortex, 13 (11). pp. 1196-1207. ISSN 1047-3211

Broughton, S. J., Tully, T., Greenspan, R. J. (January 2003) Conditioning deficits of CaM-kinase transgenic Drosophila melanogaster in a new excitatory courtship assay. Journal of Neurogenetics, 17 (1). pp. 91-102. ISSN 0167-7063

Bureau, I., von Saint Paul, F., Svoboda, K. (December 2006) Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS Biology, 4 (12). pp. 2361-2371. ISSN 1544-9173

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Campbell, R. A. A., Turner, G. C. (January 2010) The mushroom body. Current Biology, 20 (1).

Carandini, M., Churchland, A. K. (July 2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16 (7). pp. 824-831. ISSN 1097-6256

Carlezon, W. A., Haile, C. N., Coopersmith, R., Hayashi, Y., Malinow, R., Neve, R. L., Nestler, E. J. (March 2000) Distinct sites of opiate reward and aversion within the midbrain identified using a herpes simplex virus vector expressing GluR1. Journal of Neuroscience, 20 (5). ISSN 0270-6474

Cazakoff, B. N., Lau, B. Y., Crump, K. L., Demmer, H. S., Shea, S. D. (March 2014) Broadly tuned and respiration-independent inhibition in the olfactory bulb of awake mice. Nature Neuroscience. ISSN 1097-6256

Chae, H. G., Kepple, D., Koulakov, A. A., Murthy, V. N., Albeanu, D. F. (September 2015) Mosaic representation of odors in the output layer of the mouse olfactory bulb. Chemical Senses, 40 (7). p. 564. ISSN 0379-864X

Chae, Honggoo, Banerjee, Arkarup, Dussauze, Marie, Albeanu, Dinu F (September 2022) Long-range functional loops in the mouse olfactory system and their roles in computing odor identity. Neuron. S0896-6273(22)00810. ISSN 0896-6273

Chen, Jerry L, Voigt, Fabian F, Javadzadeh, Mitra, Krueppel, Roland, Helmchen, Fritjof (May 2016) Long-range population dynamics of anatomically defined neocortical networks. eLife, 5. ISSN 2050-084X

Chen, B. L. (2007) Neuronal Network of C. elegans: from Anatomy to Behavior. PhD thesis, Cold Spring Harbor Laboratory.

Chourbaji, S., Hellweg, R., Brandis, D., Zorner, B., Zacher, C., Lang, U. E., Henn, F. A., Hortnagl, H., Gass, P. (February 2004) Mice with reduced brain-derived neurotrophic factor expression show decreased choline acetyltransferase activity, but regular brain monoamine levels and unaltered emotional behavior. Brain Res Mol Brain Res, 121 (1-2). pp. 28-36. ISSN 0169-328X (Print)0169-328X (Linking)

Churchland, A. K. (May 2013) Noise in decision making. In: European Science Foundation Exploratory Workshop , May 29th 2013, Sant Fruitós del Bages, Spain. (Unpublished)

Churchland, A. K. (May 2011) Normalizing relations between the senses. Nature Neuroscience, 14 (6). pp. 672-3. ISSN 1097-6256

Churchland, A. K. (November 2011) Talk from Anne Churchland at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Churchland, A. K., Ditterich, J. (2012) New advances in understanding decisions among multiple alternatives. Current Opinion in Neurobiology. ISSN 0959-4388

Churchland, A. K., Gardner, J. L., Chou, I. H., Priebe, N. J., Lisberger, S. G. (March 2003) Directional anisotropies reveal a functional segregation of visual motion processing for perception and action. Neuron, 37 (6). pp. 1001-1011. ISSN 08966273 (ISSN)

Churchland, A. K., Huang, X., Lisberger, S. G. (January 2007) Responses of neurons in the medial superior temporal visual area to apparent motion stimuli in macaque monkeys. Journal of Neurophysiology, 97 (1). pp. 272-282. ISSN 00223077 (ISSN)

Churchland, A. K., Kiani, R., Shadlen, M. N. (2008) Decision-making with multiple alternatives. Nature Neuroscience, 11 (6). pp. 693-702. ISSN 10976256 (ISSN)

Churchland, A. K., Lisberger, S. G. (2005) Discharge properties of MST neurons that project to the frontal pursuit area in macaque monkeys. Journal of Neurophysiology, 94 (2). pp. 1084-1090. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (2002) Gain control in human smooth-pursuit eye movements. Journal of Neurophysiology, 87 (6). pp. 2936-2945. ISSN 00223077 (ISSN)

Churchland, A. K., Lisberger, S. G. (October 2005) Relationship between extraretinal component of firing rate and eye speed in area MST of Macaque monkeys. Journal of Neurophysiology, 94 (4). pp. 2416-2426. ISSN 00223077 (ISSN)

Churchland, A. K., Shadlen, M. N. (2007) Decision-Making and Vision. In: The New Encyclopedia of Neuroscience. Elsevier.

Churchland, Anne K., Kiani, Roozbeh (October 2016) Three challenges for connecting model to mechanism in decision-making. Current Opinion in Behavioral Sciences, 11. pp. 74-80. ISSN 2352-1546

Cohen, Yarden, Engel, Tatiana A, Langdon, Christopher, Lindsay, Grace W, Ott, Torben, Peters, Megan AK, Shine, James M, Breton-Provencher, Vincent, Ramaswamy, Srikanth (November 2022) Recent Advances at the Interface of Neuroscience and Artificial Neural Networks. The Journal of Neuroscience, 42 (45). pp. 8514-8523. ISSN 1529-2401

Corlett, P. R., Horga, G., Fletcher, P. C., Alderson-Day, B., Schmack, K., Powers, A. R. (December 2018) Hallucinations and Strong Priors. Trends in Cognitive Sciences, 23 (2). pp. 114-127. ISSN 13646613

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Ireland, Elise, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (May 2024) Mapping model units to visual neurons reveals population code for social behaviour. Nature. ISSN 0028-0836 (Public Dataset)

Cowley, Benjamin R, Calhoun, Adam J, Rangarajan, Nivedita, Turner, Maxwell H, Pillow, Jonathan W, Murthy, Mala (October 2023) One-to-one mapping between deep network units and real neurons uncovers a visual population code for social behavior. bioRxiv. (Public Dataset) (Submitted)

Cowley, Benjamin R, Snyder, Adam C, Acar, Katerina, Williamson, Ryan C, Yu, Byron M, Smith, Matthew A (November 2020) Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron, 108 (3). 551-567.e8. ISSN 0896-6273

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Dalla, Christina, Jaric, Ivana, Pavlidi, Pavlina, Hodes, Georgia E, Kokras, Nikolaos, Bespalov, Anton, Kas, Martien J, Steckler, Thomas, Kabbaj, Mohamed, Würbel, Hanno, Marroco, Jordan, Tollkuhn, Jessica, Shansky, Rebecca, Bangasser, Debra, Becker, Jill B, McCarthy, Margaret, Ferland-Beckham, Chantelle (October 2023) Practical solutions for including Sex As a Biological Variable (SABV) in preclinical neuropsychopharmacological research. Journal of Neuroscience Methods. p. 110003. ISSN 0165-0270

Daruwalla, Kyle, Martin, Irene Nozal, Frankel, Andrew, Naglic, Diana, Ahmad, Zainab, Hou, Xun Helen (May 2024) A 3D whole-face movement analysis system to uncover underlying physiology in mice. bioRxiv. (Submitted)

Dasgupta, S., Sheehan, T. C., Stevens, C. F., Navlakha, S. (December 2018) A neural data structure for novelty detection. Proc Natl Acad Sci U S A, 115 (51). pp. 13093-13098. ISSN 0027-8424 (Public Dataset)

DeCoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (May 2007) Oscillations of local field potentials in the rat dorsal striatum during spontaneous and instructed behaviors. Journal of Neurophysiology, 97 (5). pp. 3800-3805. ISSN 0022-3077

DeWeese, M. R. (June 2000) An optimal preparation for studying optimization. Neuron, 26 (3). pp. 546-548. ISSN 0896-6273

DeWeese, M. R., Hromádka, T., Zador, A. M. (November 2005) Reliability and representational bandwidth in the auditory cortex. Neuron, 48 (3). pp. 479-88. ISSN 0896-6273 (Print)

Decoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (March 2007) Learning-related coordination of striatal and hippocampal theta rhythms during acquisition of a procedural maze task. Proc Natl Acad Sci U S A, 104 (13). pp. 5644-9. ISSN 0027-8424 (Print)

Deng, Hanfei, Xiao, Xiong, Yang, Tao, Ritola, Kimberly, Hantman, Adam, Li, Yulong, Huang, Z Josh, Li, Bo (December 2021) A genetically defined insula-brainstem circuit selectively controls motivational vigor. Cell. ISSN 0092-8674

Deregnaucourt, S., Mitra, P. P., Feher, O., Maul, K. K., Lints, T. J., Tchernichovski, O. (2004) Song development: In search of the error-signal. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 364-376. ISBN 0077-8923

Deregnaucourt, S., Mitra, P. P., Feher, O., Pytte, C., Tchernichovski, O. (February 2005) How sleep affects the developmental learning of bird song. Nature, 433 (7027). pp. 710-716. ISSN 0028-0836

Dhawale, A. K., Hagiwara, A., Bhalla, U. S., Murthy, V. N., Albeanu, D. F. (October 2010) Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nature Neuroscience, 13. pp. 1404-12. ISSN 1097-6256

Diamond, A., Churchland, A. K., Cruess, L., Kirkham, N. Z. (November 1999) Early developments in the ability to understand the relation between stimulus and reward. Developmental Psychology, 35 (6). pp. 1507-1517. ISSN 00121649 (ISSN)

Dong, Ao, He, Kaikai, Dudok, Barna, Farrell, Jordan S, Guan, Wuqiang, Liput, Daniel J, Puhl, Henry L, Cai, Ruyi, Wang, Huan, Duan, Jiali, Albarran, Eddy, Ding, Jun, Lovinger, David M, Li, Bo, Soltesz, Ivan, Li, Yulong (November 2021) A fluorescent sensor for spatiotemporally resolved imaging of endocannabinoid dynamics in vivo. Nature Biotechnology. ISSN 1087-0156

Dore, K., Pao, Y., Soria Lopez, J., Aronson, S., Zhan, H., Ghosh, S., Merrill, S., Zador, A. M., Malinow, R., Kebschull, J. M. (January 2020) SYNPLA, a method to identify synapses displaying plasticity after learning. Proc Natl Acad Sci U S A, 117 (6). pp. 3214-3219. ISSN 0027-8424 (Public Dataset)

Drugowitsch, J., Moreno-Bote, R., Churchland, A. K., Shadlen, M. N., Pouget, A. (March 2012) The Cost of Accumulating Evidence in Perceptual Decision Making. Journal of Neuroscience, 32 (11). pp. 3612-3628. ISSN 0270-6474

Dudok, Barna, Szoboszlay, Miklos, Paul, Anirban, Klein, Peter M, Liao, Zhenrui, Hwaun, Ernie, Szabo, Gergely G, Geiller, Tristan, Vancura, Bert, Wang, Bor-Shuen, McKenzie, Sam, Homidan, Jesslyn, Klaver, Lianne MF, English, Daniel F, Huang, Z Josh, Buzsáki, György, Losonczy, Attila, Soltesz, Ivan (October 2021) Recruitment and inhibitory action of hippocampal axo-axonic cells during behavior. Neuron. ISSN 0896-6273

Dura, J. M., Preat, T., Tully, T. (October 2007) Identification of linotte, a new gene affecting learning and memory in Drosophila melanogaster. Journal of Neurogenetics, 21 (4). pp. 307-320. ISSN 0167-7063

Dussauze, Marie (February 2024) Sensorimotor neural representations in the olfactory cortex. PhD thesis, Cold Spring Harbor Laboratory.

Dvorkin, Roman, Shea, Stephen D (February 2022) Precise and pervasive phasic bursting in locus coeruleus during maternal behavior in mice. The Journal of Neuroscience. ISSN 0270-6474

de Gee, J.W., Tsetsos, K., Schwabe, L., Urai, A.E., McCormick, D., McGinley, M.J., Donner, T.H. (June 2020) Pupil-linked Phasic Arousal Predicts a Reduction of Choice Bias Across Species and Decision Domains. Elife, 9. e54014. ISSN 2050-084X

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Eban-Rothschild, Ada, Borniger, Jeremy C, Rothschild, Gideon, Giardino, William J, Morrow, Joshua G, de Lecea, Luis (March 2020) Arousal State-Dependent Alterations in VTA-GABAergic Neuronal Activity. eNeuro, 7 (2). ENEURO.0356-19.2020. ISSN 2373-2822

Elsayed, G. F., Lara, A. H., Kaufman, M. T., Churchland, M. M., Cunningham, J. P. (October 2016) Reorganization between preparatory and movement population responses in motor cortex. Nat Commun, 7. p. 13239. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Engel, T. A., Steinmetz, N. A. (October 2019) New perspectives on dimensionality and variability from large-scale cortical dynamics. Curr Opin Neurobiol, 58. pp. 181-190. ISSN 0959-4388

Evans, Llewellyn T., Abramson, Harold Alexander (1958) Lysergic acid diethylamide(LSD-25): XXV. Effect on social order of newts. Triturus v. viridescents (RAF). Journal of Psychology: Interdisciplinary and Applied, 45. pp. 153-169.

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Fee, M. S., Mitra, P. P., Kleinfeld, D. (1997) Central versus peripheral determinants of patterned spike activity in rat vibrissa cortex during whisking. Journal of Neurophysiology, 78 (2). pp. 1144-1149. ISSN 00223077 (ISSN)

Fee, M. S., Shraiman, B., Pesaran, B., Mitra, P. P. (1998) The role of nonlinear dynamics of the syrinx in the vocalizations of a songbird. Nature, 395 (6697). pp. 67-71. ISSN 00280836 (ISSN)

Feierstein, C. E. (February 2007) Representation of goals, actions and outcomes in rat orbitofrontal cortex. PhD thesis, Cold Spring Harbor Laboratory.

Felsen, G., Dan, Y. (December 2005) A natural approach to studying vision. Nat Neurosci, 8 (12). pp. 1643-6. ISSN 1097-6256 (Print)

Felsen, G., Mainen, Z. F. (July 2012) Midbrain contributions to sensorimotor decision making. Journal of Neurophysiology, 108 (1). pp. 135-147. ISSN 0022-3077

Felsen, G., Mainen, Z. F. (October 2008) Neural substrates of sensory-guided locomotor decisions in the rat superior colliculus. Neuron, 60 (1). pp. 137-48.

Fendt, M., Lex, A., Falkai, P., Henn, F. A., Schmitt, A. (July 2008) Behavioural alterations in rats following neonatal hypoxia and effects of clozapine: implications for schizophrenia. Pharmacopsychiatry, 41 (4). pp. 138-45. ISSN 0176-3679 (Print)0176-3679 (Linking)

Fenton, André A, Hurtado, José R, Broek, Jantine AC, Park, EunHye, Mishra, Bud (August 2023) Do Place Cells Dream of Deceptive Moves in a Signaling Game? Neuroscience, 529. pp. 129-147. ISSN 0306-4522

Filipkowski, R. K., Rydz, M., Berdel, B., Morys, J., Kaczmarek, L. (March 2000) Tactile experience induces c-fos expression in rat barrel cortex. Learning & Memory, 7 (2). pp. 116-122. ISSN 1072-0502

Filipkowski, R. K., Rydz, M., Kaczmarek, L. (2001) Expression of c-Fos, Fos B, Jun B, and Zif268 transcription factor proteins in rat barrel cortex following apomorphine-evoked whisking behavior. Neuroscience, 106 (4). pp. 679-688. ISSN 0306-4522

Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)

Fu, Y., Tucciarone, J. M., Espinosa, J. S., Sheng, N., Darcy, D. P., Nicoll, R. A., Huang, Z. J., Stryker, M. P. (March 2014) A cortical circuit for gain control by behavioral state. Cell, 156 (6). pp. 1139-52. ISSN 0092-8674

G

Gakamsky, A., Oron, E., Valente, D., Mitra, P. P., Segal, D., Benjamini, Y., Golani, I. (October 2013) The Angular Interval between the Direction of Progression and Body Orientation in Normal, Alcohol- and Cocaine Treated Fruit Flies. PLoS ONE, 8 (10). ISSN 19326203 (ISSN)

Gegenhuber, B., Tollkuhn, J. (June 2019) Sex Differences in the Epigenome: A Cause or Consequence of Sexual Differentiation of the Brain? Genes (Basel), 10 (6). E432. ISSN 2073-4425 (Print)2073-4425

Gegenhuber, Bruno, Tollkuhn, Jessica (July 2022) Epigenetic Mechanisms of Brain Sexual Differentiation. Cold Spring Harbor Perspectives in Biology. a039099. ISSN 1943-0264

Genkin, Mikhail, Hughes, Owen, Engel, Tatiana A (October 2021) Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories. Nature Communications, 12 (1). p. 5986. ISSN 2041-1723

Ghosh, Sanchari, Zador, Anthony M (March 2021) Corticostriatal Plasticity Established by Initial Learning Persists after Behavioral Reversal. eNeuro, 8 (2). pp. 1-10. ISSN 2373-2822

Giaffar, Hamza, Shuvaev, Sergey, Rinberg, Dmitry, Koulakov, Alexei A (September 2024) The primacy model and the structure of olfactory space. PLoS Computational Biology, 20 (9). e1012379. ISSN 1553-734X (Public Dataset)

Giber, K., Diana, M. A., V, M. Plattner, Dugue, G. P., Bokor, H., Rousseau, C. V., Magloczky, Z., Havas, L., Hangya, B., Wildner, H., Zeilhofer, H. U., Dieudonne, S., Acsady, L. (February 2015) A subcortical inhibitory signal for behavioral arrest in the thalamus. Nature Neuroscience, 18. pp. 562-568. ISSN 1097-6256

Giovanniello, J., Yu, K., Furlan, A., Nachtrab, G. T., Sharma, R., Chen, X., Li, B. (November 2020) A Central Amygdala-Globus Pallidus Circuit Conveys Unconditioned Stimulus-Related Information and Controls Fear Learning. J Neurosci, 40 (47). pp. 9043-9054. ISSN 0270-6474 (Print)0270-6474

Gomez-Marin, A., Oron, E., Gakamsky, A., Dan, Valente, Benjamini, Y., Golani, I. (June 2016) Generative rules of Drosophila locomotor behavior as a candidate homology across phyla. Sci Rep, 6. p. 27555. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Greenberg, L., Edwards, E., Henn, F. A. (September 1989) Dexamethasone suppression test in helpless rats. Biological Psychiatry, 26 (5). pp. 530-2. ISSN 0006-3223

Grinevich, V., Brecht, M., Osten, P. (September 2005) Monosynaptic pathway from rat vibrissa motor cortex to facial motor neurons revealed by lentivirus-based axonal tracing. Journal of Neuroscience, 25 (36). pp. 8250-8. ISSN 0270-6474

Gruene, T. M., Flick, K., Stefano, A., Shea, S. D., Shansky, R. M. (November 2015) Sexually divergent expression of active and passive conditioned fear responses in rats. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)

Gruntman, E., Turner, G. C. (October 2013) Integration of the olfactory code across dendritic claws of single mushroom body neurons. Nature Neuroscience, 16 (12). pp. 1821-1829. ISSN 10976256

Gupta, Priyanka, Albeanu, Dinu F, Bhalla, Upinder S (September 2016) An odor delivery system for arbitrary time-varying patterns of odors, mixtures and concentrations. bioRxiv. (Submitted)

Gustison, Morgan L, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Phelps, Steven M (February 2024) Sexual coordination in a whole-brain map of prairie vole pair bonding. eLife, 12. RP87029. ISSN 2050-084X (Public Dataset)

H

Haesler, S., Rochefort, C., Georgi, B., Licznerski, P., Osten, P., Scharff, C. (December 2007) Incomplete and inaccurate vocal imitation after knockdown of FoxP2 in songbird basal ganglia nucleus Area X. PLoS Biology, 5 (12). e321. ISSN 1544-9173

Hall, W. S., Cookson, K. K., Heaton, J. T., Roberts, T., Shea, S. D., Brauth, S. E. (January 1997) Audio-vocal learning in budgerigars. Annals of the New York Academy of Sciences, 807. pp. 352-67. ISSN 0077-8923 (Print)0077-8923

Hangya, Balázs, Kepecs, Adam (June 2015) Vision: How to Train Visual Cortex to Predict Reward Time. Current Biology, 25 (12). R490-R492. ISSN 0960-9822

Hangya, Balázs, Ranade, Sachin P, Lorenc, Maja, Kepecs, Adam (August 2015) Central Cholinergic Neurons Are Rapidly Recruited by Reinforcement Feedback. Cell, 162 (5). pp. 1155-1168. ISSN 0092-8674

Henn, F. A., Edwards, E., Anderson, D. (1986) Receptor regulation as a function of experience. NIDA research monograph, 74. pp. 107-16. ISSN 1046-9516 (Print)1046-9516

Hermansen, Erik, Klindt, David A, Dunn, Benjamin A (June 2024) Uncovering 2-D toroidal representations in grid cell ensemble activity during 1-D behavior. Nature Communications, 15 (1). p. 5429. ISSN 2041-1723

Hige, Toshihide, Turner, Glenn (April 2015) Learning: The Good, the Bad, and the Fly. Neuron, 86 (2). pp. 343-345. ISSN 0896-6273

Hirokawa, J., Sadakane, O., Sakata, S., Bosch, M., Sakurai, Y., Yamamori, T. (September 2011) Multisensory information facilitates reaction speed by enlarging activity difference between superior colliculus hemispheres in rats. PLoS ONE, 6 (9). ISSN 1932-6203 (Electronic)

Hirokawa, J., Vaughan, A., Masset, P., Ott, T., Kepecs, A. (December 2019) Frontal cortex neuron types categorically encode single decision variables. Nature, 576 (7787). pp. 446-451. ISSN 0028-0836 (Public Dataset)

Hoefling, Larissa, Szatko, Klaudia P, Behrens, Christian, Qiu, Yongrong, Klindt, David Alexander, Jessen, Zachary, Schwartz, Gregory S, Bethge, Matthias, Berens, Philipp, Franke, Katrin, Ecker, Alexander S, Euler, Thomas (December 2022) A chromatic feature detector in the retina signals visual context changes. bioRxiv. (Submitted)

Honegger, K. S., Campbell, R. A. A., Turner, G. C. (August 2011) Cellular-Resolution Population Imaging Reveals Robust Sparse Coding in the Drosophila Mushroom Body. Journal of Neuroscience, 31 (33). pp. 11772-11785. ISSN 0270-6474

Honegger, K. S., Turner, G. C., Campbell, R. A. (December 2012) Functional imaging of population coding in olfaction: linking neural activity to perception. Journal of Neurogenetics, 26. p. 64. ISSN 0167-7063

Horev, G., Saig, A., Knutsen, P. M., Pietr, M., Yu, C. X., Ahissar, E. (November 2011) Motor-sensory convergence in object localization: a comparative study in rats and humans. Philosophical Transactions of the Royal Society B-Biological Sciences, 366 (1581). pp. 3070-3076. ISSN 0962-8436

Hromádka, T., Zador, A. M. (July 2007) Toward the mechanisms of auditory attention. Hear Res, 229 (1-2). pp. 180-5. ISSN 0378-5955 (Print)

Hu, H., Real, E., Takamiya, K., Kang, M. G., Ledoux, J., Huganir, R. L., Malinow, R. (October 2007) Emotion Enhances Learning via Norepinephrine Regulation of AMPA-Receptor Trafficking. Cell, 131 (1). pp. 160-73. ISSN 0092-8674 (Print)

Huang, Z. J., Satterlie, R. A. (1990) Neuronal mechanisms underlying behavioral switching in a pteropod mollusc. Journal of Comparative Physiology - A Sensory, Neural, and Behavioral Physiology, 166 (6). pp. 875-887. ISSN 03407594 (ISSN)

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Hubrich-Ungureanu, P., Kaemmerer, N., Henn, F. A., Braus, D. F. (February 2002) Lateralized organization of the cerebellum in a silent verbal fluency task: a functional magnetic resonance imaging study in healthy volunteers. Neuroscience Letters, 319 (2). pp. 91-4. ISSN 03043940 (ISSN)

I

International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X

J

Janus, C., Dubnau, J. T. (February 2003) Modeling behavior: the quest to link mechanisms to function. Genes Brain and Behavior, 2 (1). pp. 56-61. ISSN 1601-1848

Jaramillo, S., Borges, K., Zador, A. M. (April 2014) Auditory Thalamus and Auditory Cortex Are Equally Modulated by Context during Flexible Categorization of Sounds. Journal of Neuroscience, 34 (15). pp. 5291-301. ISSN 0270-6474

Jaramillo, S., Zador, A. M. (September 2014) Mice and rats achieve similar levels of performance in an adaptive decision-making task. Frontiers in Systems Neuroscience, 8. Article no.173. ISSN 1662-5137

Joo, Hannah R, Liang, Hexin, Chung, Jason E, Geaghan-Breiner, Charlotte, Fan, Jiang Lan, Nachman, Benjamin P, Kepecs, Adam, Frank, Loren M (August 2021) Rats use memory confidence to guide decisions. Current Biology. ISSN 0960-9822

Jorstad, Nikolas L, Song, Janet HT, Exposito-Alonso, David, Suresh, Hamsini, Castro-Pacheco, Nathan, Krienen, Fenna M, Yanny, Anna Marie, Close, Jennie, Gelfand, Emily, Long, Brian, Seeman, Stephanie C, Travaglini, Kyle J, Basu, Soumyadeep, Beaudin, Marc, Bertagnolli, Darren, Crow, Megan, Ding, Song-Lin, Eggermont, Jeroen, Glandon, Alexandra, Goldy, Jeff, Kiick, Katelyn, Kroes, Thomas, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Siletti, Kimberly, Somasundaram, Saroja, Tieu, Michael, Torkelson, Amy, Feng, Guoping, Hopkins, William D, Höllt, Thomas, Keene, C Dirk, Linnarsson, Sten, McCarroll, Steven A, Lelieveldt, Boudewijn P, Sherwood, Chet C, Smith, Kimberly, Walsh, Christopher A, Dobin, Alexander, Gillis, Jesse, Lein, Ed S, Hodge, Rebecca D, Bakken, Trygve E (October 2023) Comparative transcriptomics reveals human-specific cortical features. Science, 382 (6667). eade9516. ISSN 0036-8075

Jr, Okobi Daniel E, Banerjee, Arkarup, Matheson, Andrew MM, Phelps, Steven M, Long, Michael A (March 2019) Motor cortical control of vocal interaction in neotropical singing mice. Science, 363 (6430). 983-+. ISSN 0036-8075

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice. Elife, 8. ISSN 2050-084x (Public Dataset)

Juavinett, A. L., Bekheet, G., Churchland, A. K. (2018) 3D design files for chronically-implanted Neuropixels probes from "Juavinett, Ashley and Bekheet, George and Churchland, Anne K. (2018) bioRxiv". [Dataset] (Unpublished)

Juntti, S. A., Tollkuhn, J., Wu, M. V., Fraser, E. J., Soderborg, T., Tan, S., Honda, S., Harada, N., Shah, N. M. (April 2010) The androgen receptor governs the execution, but not programming, of male sexual and territorial behaviors. Neuron, 66 (2). pp. 260-72. ISSN 1097-4199 (Electronic)0896-6273 (Linking)

K

Kaufman, M. T., Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496 (7444). pp. 172-173. ISSN 00280836 (ISSN)

Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (February 2014) Cortical activity in the null space: permitting preparation without movement. Nature Neuroscience, 17 (3). pp. 440-448. ISSN 1097-6256

Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (May 2015) Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex. Elife, 4. e04677. ISSN 2050-084X (Electronic)2050-084X (Linking)

Kaufman, M. T., Churchland, M. M., Shenoy, K. V. (May 2013) The roles of monkey M1 neuron classes in movement preparation and execution. Journal of Neurophysiology, 110 (4). pp. 817-825. ISSN 00223077

Kay, L. M., Beshel, J., Brea, J., Martin, C., Rojas-Líbano, D., Kopell, N. (April 2009) Olfactory oscillations: the what, how and what for. Trends in Neurosciences, 32 (4). pp. 207-214.

Kepecs, A. (July 2019) Summary: Order and Disorder in Brains and Behavior. Cold Spring Harb Symp Quant Biol, 83. pp. 219-225. ISSN 0091-7451

Kepecs, A. (June 2013) The uncertainty of it all. Nature Neuroscience, 16 (6). pp. 660-2. ISSN 1097-6256

Kepecs, A., Mainen, Z. F. (May 2012) A computational framework for the study of confidence in humans and animals. Philos Trans R Soc Lond B Biol Sci, 367 (1594). pp. 1322-37. ISSN 1471-2970 (Electronic)0962-8436 (Linking)

Kepecs, A., Uchida, N., Mainen, Z . F. (February 2006) The sniff as a unit of olfactory processing. Chem Senses, 31 (2). pp. 167-79. ISSN 0379-864X (Print)

Kepecs, A., Uchida, N., Zariwala, H. A., Mainen, Z. F. (September 2008) Neural correlates, computation and behavioural impact of decision confidence. Nature, 455 (7210). pp. 227-31.

Kepple, D. R., Giaffar, H., Rinberg, D., Koulakov, A. A. (February 2019) Deconstructing Odorant Identity via Primacy in Dual Networks. Neural Computation, 31 (4). pp. 710-737. ISSN 08997667 (ISSN)

Khurana, S., Siddiqi, O. (2013) Olfactory responses of drosophila larvae. Chemical Senses, 38 (4). pp. 315-323. ISSN 0379864X (ISSN)

Kiani, R., Churchland, A. K., Shadlen, M. N. (October 2013) Integration of Direction Cues Is Invariant to the Temporal Gap between Them. Journal of Neuroscience, 33 (42). pp. 16483-9. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Kleinfeld, D., Mitra, P. P., Fee, M. S. (1997) Motor modulation of sensory input: Exploratory whisking by rat as a model system. Somatosensory and Motor Research, 14 (1). p. 63. ISSN 0899-0220

Klindt, David, Devaine, Marie, Daunizeau, Jean (January 2017) Does the way we read others' mind change over the lifespan? Insights from a massive web poll of cognitive skills from childhood to late adulthood. Cortex, 86. pp. 205-215. ISSN 0010-9452

Knobloch, H. S., Charlet, A., Hoffmann, L., Eliava, M., Khrulev, S., Cetin, A., Osten, P., Schwarz, M., Seeburg, P., Stoop, R., Grinevich, V. (February 2012) Evoked axonal oxytocin release in the central amygdala attenuates fear response. Neuron, 73 (3). pp. 553-566. ISSN 08966273 (ISSN)

Kopec, C. D., Kessels, H. W., Bush, D. E., Cain, C. K., LeDoux, J. E., Malinow, R. (January 2007) A robust automated method to analyze rodent motion during fear conditioning. Neuropharmacology, 52 (1). pp. 228-33. ISSN 0028-3908 (Print)

Kopec, C. D., Real, E., Kessels, H. W., Malinow, R. (December 2007) GluR1 links structural and functional plasticity at excitatory synapses. J Neurosci, 27 (50). pp. 13706-18. ISSN 1529-2401 (Electronic)

Koulakov, A. A., Gelperin, A., Rinberg, D. (December 2007) Olfactory coding with all-or-nothing glomeruli. J Neurophysiol, 98 (6). pp. 3134-42. ISSN 0022-3077 (Print)

Koulakov, A. A., Kolterman, B. E., Enikolopov, A. G., Rinberg, D. (September 2011) In search of the structure of human olfactory space. Frontiers in Systems Neuroscience, 5. p. 65. ISSN 1662-5137 (Electronic)1662-5137 (Linking)

Kovalenko, I. L., Galyamina, A. G., Smagin, D. A., Michurina, T. V., Kudryavtseva, N. N., Enikolopov, G. (2014) Extended effect of chronic social defeat stress in childhood on behaviors in adulthood. PLoS One, 9 (3). e91762. ISSN 1932-6203

Kuzin, B. A., Nikitina, E. A., Cherezov, R. O., Vorontsova, J. E., Slezinger, M. S., Zatsepina, O. G., Simonova, O. B., Enikolopov, G. N., Savvateeva-Popova, E. V. (April 2014) Combination of hypomorphic mutations of the Drosophila homologues of aryl hydrocarbon receptor and nucleosome assembly protein family genes disrupts morphogenesis, memory and detoxification. PLoS ONE, 9 (4). e94975. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Kvitsiani, D., Ranade, S., Hangya, B., Taniguchi, H., Huang, J. Z., Kepecs, A. (May 2013) Distinct behavioural and network correlates of two interneuron types in prefrontal cortex. Nature, 498 (7454). pp. 363-366. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

L

Lak, A., Hueske, E., Hirokawa, J., Masset, P., Ott, T., Urai, A. E., Donner, T.H., Carandini, M., Tonegawa, S., Uchida, N., Kepecs, A. (April 2020) Reinforcement Biases Subsequent Perceptual Decisions When Confidence Is Low: A Widespread Behavioral Phenomenon. Elife, 9 (e49834). ISSN 2050-084X

Lak, A., Okun, M., Moss, M. M., Gurnani, H., Farrell, K., Wells, M. J., Reddy, C. B., Kepecs, A., Harris, K. D., Carandini, M. (December 2019) Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value. Neuron. ISSN 0896-6273

Lakhani, Asad A (March 2023) The Role of Recurrently Observed Aneuploidy in Tumorigenesis. PhD thesis, Cold Spring Harbor Laboratory.

Langdon, Christopher, Engel, Tatiana (2022) Latent circuit inference from heterogeneous neural responses during cognitive tasks. bioRxiv. (Submitted)

Langdon, Christopher, Genkin, Mikhail, Engel, Tatiana A (April 2023) A unifying perspective on neural manifolds and circuits for cognition. Nature Reviews Neuroscience. ISSN 1471-003X

Lau, B. Y. B., Krishnan, K., Huang, Z. J., Shea, S. D. (January 2020) Maternal experience-dependent cortical plasticity in mice is circuit- and stimulus-specific and requires MECP2. J Neurosci, 40 (7). pp. 1514-1526. ISSN 0270-6474

Lee, Ser Yee, Goh, Brian KP, Sepideh, Gholami, Allen, John C, Merkow, Ryan P, Teo, Jin Yao, Chandra, Deepa, Koh, Ye Xin, Tan, Ek Khoon, Kam, Juinn Haur, Cheow, Peng Chung, Chow, Pierce KH, Ooi, London LPJ, Chung, Alexander YF, D'Angelica, Michael I, Jarnagin, William R, Peter Kingham, T, Chan, Chung Yip (March 2019) Laparoscopic Liver Resection Difficulty Score-a Validation Study. Journal of Gastrointestinal Surgery, 23 (3). pp. 545-555. ISSN 1091-255X

Lee, A. M., Tai, L. H., Zador, A., Wilbrecht, L. (June 2015) Between the primate and 'reptilian' brain: Rodent models demonstrate the role of corticostriatal circuits in decision making. Neuroscience, 296. pp. 66-74. ISSN 0306-4522

Li, B. (2019) Central amygdala cells for learning and expressing aversive emotional memories. Current Opinion in Behavioral Sciences, 26. pp. 40-45. ISSN 23521546 (ISSN)

Li, B. (November 2012) Talk from Bo Li at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Li, B., Devidze, N., Barengolts, D., Prostak, N., Sphicas, E., Apicella, A. J., Malinow, R., Emamian, E. S. (September 2009) NMDA Receptor Phosphorylation at a Site Affected in Schizophrenia Controls Synaptic and Behavioral Plasticity. J Neurosci, 29 (38). pp. 11965-11972.

Li, H., Penzo, M. A., Taniguchi, H., Kopec, C. D., Huang, Z. J., Li, B. (January 2013) Experience-dependent modification of a central amygdala fear circuit. Nature Neuroscience, 16 (3). pp. 332-339. ISSN 1097-6256

Li, W., Dubnau, J. (October 2012) A Prion-Mediated Mechanism for Memory Proposed in Drosophila. Neuron, 76 (2). pp. 260-262. ISSN 0896-6273

Li, Shi-Bin, Borniger, Jeremy C, Yamaguchi, Hiroshi, Hédou, Julien, Gaudilliere, Brice, de Lecea, Luis (September 2020) Hypothalamic circuitry underlying stress-induced insomnia and peripheral immunosuppression. Science Advances, 6 (37). eabc2590-eabc2590. ISSN 2375-2548

Lin, S. C., Brown, R. E., Hussain Shuler, M. G., Petersen, C. C., Kepecs, A. (October 2015) Optogenetic Dissection of the Basal Forebrain Neuromodulatory Control of Cortical Activation, Plasticity, and Cognition. J Neurosci, 35 (41). pp. 13896-903. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Luna, R., Hernandez, A., Brody, C. D., Romo, R. (September 2005) Neural codes for perceptual discrimination in primary somatosensory cortex. Nature Neuroscience, 8 (9). pp. 1210-1219. ISSN 1097-6256

Luo, Pei X, Zakharenkov, Hannah Cortez, Torres, Lisette Y, Rios, Roberto A, Gegenhuber, Bruno, Black, Alexis M, Xu, Christine K, Minie, Vanessa A, Tran, Amy M, Tollkuhn, Jessica, Trainor, Brian C (May 2022) Oxytocin receptor behavioral effects and cell types in the bed nucleus of the stria terminalis. Hormones and Behaviour, 143. p. 105203. ISSN 0018-506X

Lyon, Gholson J, Longo, Joseph, Garcia, Andrew, Inusa, Fatima, Marchi, Elaine, Shi, Daniel, Dörfel, Max, Arnesen, Thomas, Aldabe, Rafael, Lyons, Scott, Nashat, Melissa A, Bolton, David (May 2024) Evaluating possible maternal effect lethality and genetic background effects in Naa10 knockout mice. PLoS ONE, 19 (5). e0301328. ISSN 1932-6203

M

Machens, C. K., Schutze, H., Franz, A., Kolesnikova, O., Stemmler, M. B., Ronacher, B., Herz, A. V. M. (April 2003) Single auditory neurons rapidly discriminate conspecific communication signals. Nature Neuroscience, 6 (4). pp. 341-342. ISSN 1097-6256

Mainen, Z. F. (August 2006) Behavioral analysis of olfactory coding and computation in rodents. Curr Opin Neurobiol, 16 (4). pp. 429-34. ISSN 0959-4388 (Print)

Mainen, Z. F. (December 2007) The main olfactory bulb and innate behavior: different perspectives on an olfactory scene. Nat Neurosci, 10 (12). pp. 1511-2.

Mainen, Z. F., Kepecs, A. (February 2009) Neural representation of behavioral outcomes in the orbitofrontal cortex. Current Opinion in Neurobiology, 19 (1). pp. 84-91.

Makino, H., Malinow, R. (2011) Compartmentalized versus global synaptic plasticity on dendrites controlled by experience. Neuron, 72 (6). pp. 1001-1011. ISSN 08966273 (ISSN)

Martin, J. V., Edwards, E., Johnson, J. O., Henn, F. A. (October 1990) Monoamine receptors in an animal model of affective disorder. Journal of Neurochemistry, 55 (4). pp. 1142-8. ISSN 0022-3042

Martinez-Rivera, F. J., Bravo-Rivera, C., Velazquez-Diaz, C. D., Montesinos-Cartagena, M., Quirk, G. J. (September 2018) Prefrontal circuits signaling active avoidance retrieval and extinction. Psychopharmacology (Berl), 236 (1). pp. 399-406. ISSN 0033-3158

Masset, P., Ott, T., Lak, A., Hirokawa, J., Kepecs, A. (June 2020) Behavior- And Modality-General Representation of Confidence in Orbitofrontal Cortex. Cell, 182. ISSN 0092-8674

McGinty, V. B., Hayden, B. Y., Heilbronner, S. R., Dumont, E. C., Graves, S. M., Mirrione, M. M., Hoffman, J. d., Sartor, G. C., España, R. A., Millan, E. Z., DiFeliceantonio, A. G., Marchant, N. J., Napier, T. C., Root, D. H., Borgland, S. L., Treadway, M. T., Floresco, S. B., McGinty, J. F., Haber, S. N. (2011) Emerging, Reemerging, and Forgotten Brain Areas of the Reward Circuit: Notes from the 2010 Motivational and Neural Networks Conference. Behavioural Brain Research, 225 (1). pp. 348-357. ISSN 0166-4328

Miller, P., Brody, C. D., Romo, R., Wang, X. J. (November 2003) A recurrent network model of somatosensory parametric working memory in the prefrontal cortex. Cerebral Cortex, 13 (11). pp. 1208-1218. ISSN 1047-3211

Mirrione, M. M., Schulz, D., Lapidus, K. A., Zhang, S., Goodman, W., Henn, F. A. (2014) Increased metabolic activity in the septum and habenula during stress is linked to subsequent expression of learned helplessness behavior. Frontiers in Human Neuroscience, 8. p. 29. ISSN 1662-5161

Miura, K., Mainen, Z. F., Uchida, N. (June 2012) Odor Representations in Olfactory Cortex: Distributed Rate Coding and Decorrelated Population Activity. Neuron, 74 (6). pp. 1087-1098. ISSN 0896-6273

Moita, M. A. P., Rosis, S., Zhou, Y., LeDoux, J. E., Blair, H. T. (February 2003) Hippocampal place cells acquire location-specific responses to the conditioned stimulus during auditory fear conditioning. Neuron, 37 (3). pp. 485-497. ISSN 0896-6273

Morris, D. H., Dubnau, J., Park, J. H., Rawls Jr, J. M. (August 2012) Divergent functions through alternative splicing: The Drosophila CRMP gene in pyrimidine metabolism, brain, and behavior. Genetics, 191 (4). pp. 1227-1238. ISSN 0016-6731

Muller, M. S., Brennecke, J. F., Porter, E. T., Ottinger, M. A., Anderson, D. J. (June 2008) Perinatal androgens and adult behavior vary with nestling social system in siblicidal boobies. PLoS ONE, 3 (6). e2460.

Murchison, E. P., Tovar, C., Hsu, A., Bender, H. S., Kheradpour, P., Rebbeck, C. A., Obendorf, D., Conlan, C., Bahlo, M., Blizzard, C. A., Pyecroft, S., Kreiss, A., Kellis, M., Stark, A., Harkins, T. T., Marshall Graves, J. A., Woods, G. M., Hannon, G. J., Papenfuss, A. T. (January 2010) The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer. Science, 327 (5961). pp. 84-7. ISSN 1095-9203 (Electronic) 1095-9203 (Linking)

Musall, S., Kaufman, M. T., Juavinett, A. L., Gluf, S., Churchland, A. K. (October 2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci, 22 (10). pp. 1677-1686. ISSN 1097-6256

Musall, S., Urai, A. E., Sussillo, D., Churchland, A. K. (October 2019) Harnessing behavioral diversity to understand neural computations for cognition. Curr Opin Neurobiol, 58. pp. 229-238. ISSN 0959-4388

N

Najafi, F., Elsayed, G. F., Cao, R., Pnevmatikakis, E., Latham, P. E., Cunningham, J. P., Churchland, A. K. (October 2019) Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. Neuron, 105 (1). pp. 165-179. ISSN 0896-6273 (Public Dataset)

Nowlan, Alexandra C, Kelahan, Clancy, Shea, Stephen D (February 2022) Multisensory integration of social signals by a pathway from the basal amygdala to the auditory cortex in maternal mice. bioRxiv. (Unpublished)

O

Osten, P., Stern-Bach, Y. (June 2006) Learning from stargazin: the mouse, the phenotype and the unexpected. Current Opinion in Neurobiology, 16 (3). pp. 275-80. ISSN 0959-4388

Ott, T., Masset, P., Kepecs, A. (July 2018) The Neurobiology of Confidence: From Beliefs to Neurons. Cold Spring Harb Symp Quant Biol, 83. pp. 9-16. ISSN 0091-7451

Ott, T., Nieder, A. (January 2019) Dopamine and Cognitive Control in Prefrontal Cortex. Trends Cogn Sci, 23 (3). pp. 213-234. ISSN 1364-6613

P

Pagliaro, Alexa H (May 2023) A disrupted parvalbumin network state impairs maternal behavior in a mouse model of Rett Syndrome. PhD thesis, Cold Spring Harbor Laboratory.

Pai, S., Erlich, J. C., Kopec, C., Brody, C. D. (September 2011) Minimal impairment in a rat model of duration discrimination following excitotoxic lesions of primary auditory and prefrontal cortices. Front Syst Neurosci, 5 (74). ISSN 1662-5137

Pai, S. S. (January 2010) Neuroanatomical Localization of Timing-Specific Brain Loci in the Rat. PhD thesis, Cold Spring Harbor Laboratory.

Pearlmutter, B. A., Zador, A. M. (2004) Monaural source separation using spectral cues. In: Independent Component Analysis and Blind Signal Separation. Lecture Notes in Computer Science, 3195 . Springer-Verlag Berlin, Berlin, pp. 478-485. ISBN 0302-9743

Penzo, M. A., Robert, V., Li, B. (February 2014) Fear Conditioning Potentiates Synaptic Transmission onto Long-Range Projection Neurons in the Lateral Subdivision of Central Amygdala. Journal of Neuroscience, 34 (7). pp. 2432-7. ISSN 0270-6474

Penzo, M. A., Robert, V., Tucciarone, J., De Bundel, D., Wang, M., Van Aelst, L., Darvas, M., Parada, L. F., Palmiter, R. D., He, M., Huang, Z. J., Li, B. (March 2015) The paraventricular thalamus controls a central amygdala fear circuit. Nature, 519 (7544). pp. 455-459. ISSN 0028-0836

Pirhayati, Delaram, Smith, Cameron L, Kroeger, Ryan, Navlakha, Saket, Pfaffinger, Paul, Reimer, Jacob, Arenkiel, Benjamin R, Patel, Ankit, Moss, Elizabeth H (August 2024) Dense and persistent odor representations in the olfactory bulb of awake mice. Journal of Neuroscience. e0116242024. ISSN 0270-6474

Pisupati, Sashank, Chartarifsky-Lynn, Lital, Khanal, Anup, Churchland, Anne K (January 2021) Lapses in perceptual decisions reflect exploration. eLife, 10. pp. 1-27. ISSN 2050-084X

Poucet, B., Sargolini, F., Song, E. Y., Hangya, B., Fox, S., Muller, R. U. (January 2014) Independence of landmark and selfmotion-guided navigation: A different role for grid cells. Philosophical Transactions of the Royal Society B: Biological Sciences, 369 (1635). ISSN 09628436 (ISSN)

Q

Qian, Yongjun, Li, Jiayun, Zhao, Shengli, Matthews, Elizabeth A, Adoff, Michael, Zhong, Weixin, An, Xu, Yeo, Michele, Park, Christine, Yang, Xiaolu, Wang, Bor-Shuen, Southwell, Derek G, Huang, Z Josh (October 2022) Programmable RNA sensing for cell monitoring and manipulation. Nature. ISSN 0028-0836

Qin, Hongtao, Cressy, Michael, Li, Wanhe, Coravos, Jonathan S, Izzi, Stephanie A, Dubnau, Joshua (April 2012) Gamma Neurons Mediate Dopaminergic Input during Aversive Olfactory Memory Formation in Drosophila. Current Biology, 22 (7). pp. 608-614. ISSN 0960-9822

Qiu, Yongrong, Zhao, Zhijian, Klindt, David, Kautzky, Magdalena, Szatko, Klaudia P, Schaeffel, Frank, Rifai, Katharina, Franke, Katrin, Busse, Laura, Euler, Thomas (August 2021) Natural environment statistics in the upper and lower visual field are reflected in mouse retinal specializations. Current Biology, 31 (15). 3233-3247.e6. ISSN 0960-9822

Quirk, M. C., Sosulski, D. L., Feierstein, C. E., Uchida, N., Mainen, Z. F. (November 2009) A defined network of fast-spiking interneurons in orbitofrontal cortex: responses to behavioral contingencies and ketamine administration. Frontiers in Systems Neuroscience, 3. p. 13. ISSN ISSN 1662-5137

R

Rambold, H., Churchland, A. K., Selig, Y., Jasmin, L., Lisberger, S. G. (2002) Partial ablations of the flocculus and ventral paraflocculus in monkeys cause linked deficits in smooth pursuit eye movements and adaptive modification of the VOR. Journal of Neurophysiology, 87 (2). pp. 912-924. ISSN 00223077 (ISSN)

Ranade, S., Hangya, B., Kepecs, A. (2013) Multiple Modes of Phase Locking between Sniffing and Whisking during Active Exploration. Journal of Neuroscience, 33 (19). pp. 8250-6. ISSN 0270-6474

Ranade, S. P., Mainen, Z. F. (August 2009) Transient firing of dorsal raphe neurons encodes diverse and specific sensory, motor and reward events. Journal of Neurophysiology, 102 (5). pp. 3026-3037. ISSN 00223077 (ISSN)

Raposo, D., Sheppard, J. P., Schrater, P. R., Churchland, A. K. (March 2012) Multisensory decision-making in rats and humans. Journal of Neuroscience, 32 (11). pp. 3726-35. ISSN 0270-6474

Redish, A David, Kepecs, Adam, Anderson, Lisa M, Calvin, Olivia L, Grissom, Nicola M, Haynos, Ann F, Heilbronner, Sarah R, Herman, Alexander B, Jacob, Suma, Ma, Sisi, Vilares, Iris, Vinogradov, Sophia, Walters, Cody J, Widge, Alik S, Zick, Jennifer L, Zilverstand, Anna (February 2022) Computational validity: using computation to translate behaviours across species. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1844). p. 20200525. ISSN 0962-8436

Richards, B. A., Lillicrap, T. P., Beaudoin, P., Bengio, Y., Bogacz, R., Christensen, A., Clopath, C., Costa, R. P., de Berker, A., Ganguli, S., Gillon, C. J., Hafner, D., Kepecs, A., Kriegeskorte, N., Latham, P., Lindsay, G. W., Miller, K. D., Naud, R., Pack, C. C., Poirazi, P., Roelfsema, P., Sacramento, J., Saxe, A., Scellier, B., Schapiro, A. C., Senn, W., Wayne, G., Yamins, D., Zenke, F., Zylberberg, J., Therien, D., Kording, K. P. (November 2019) A deep learning framework for neuroscience. Nat Neurosci, 22 (11). pp. 1761-1770. ISSN 1097-6256

Riddle, Oscar, Bates, Robert Wesley, Lahr, Ernest L. (1934) Prolactin induces broodiness in fowl (Abstract). The Anatomical Record, 60 (4 and ). p. 49.

Roach, James, Churchland, Anne, Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits. bioRxiv. (Submitted)

Robinson, B. G., Khurana, S., Nguyen, A., Chuang, T., Young, M., Yu, J., Hooten, J., Atkinson, N. S. (November 2013) Interchangeable punishments during aversive conditioning in Drosophila. Current Science, 105 (9). pp. 1254-1261. ISSN 00113891 (ISSN)

Ruiz-Ortiz, Jenelys, Tollkuhn, Jessica (January 2021) Specificity in sociogenomics: Identifying causal relationships between genes and behavior. Hormones and Behaviour, 127. p. 104882. ISSN 0018-506X

Ryu, W. S., Samuel, A. D. T. (July 2002) Thermotaxis in Caenorhabditis elegans analyzed by measuring responses to defined thermal stimuli. Journal of Neuroscience, 22 (13). pp. 5727-5733. ISSN 0270-6474

S

Sachse, Silke, Beshel, Jennifer (October 2016) The good, the bad, and the hungry: how the central brain codes odor valence to facilitate food approach in Drosophila. Current Opinion in Neurobiology, 40. pp. 53-58. ISSN 0959-4388

Sanders, J. I., Kepecs, A. (December 2012) Choice ball: A response interface for two-choice psychometric discrimination in head-fixed mice. Journal of Neurophysiology, 108 (12). pp. 3416-3423. ISSN 00223077

Sanders, J. I., Kepecs, A. (December 2014) A low-cost programmable pulse generator for physiology and behavior. Frontiers in Neuroengineering, 7 (43). ISSN 16626443

Sanders, Joshua (January 2014) A computational framework for understanding decision confidence. PhD thesis, Cold Spring Harbor Laboratory.

Sartorius, A., Ruf, M., Kief, C., Demirakca, T., Bailer, J., Ende, G., Henn, F. A., Meyer-Lindenberg, A., Dressing, H. (August 2008) Abnormal amygdala activation profile in pedophilia. Eur Arch Psychiatry Clin Neurosci, 258 (5). pp. 271-7. ISSN 0940-1334 (Print)0940-1334 (Linking)

Sartorius, A., Vollmayr, B., Neumann-Haefelin, C., Ende, G., Hoehn, M., Henn, F. A. (December 2003) Specific creatine rise in learned helplessness induced by electroconvulsive shock treatment. Neuroreport, 14 (17). pp. 2199-201. ISSN 0959-4965 (Print)0959-4965 (Linking)

Saxena, S., Kinsella, I., Musall, S., Kim, S.H., Meszaros, J., Thibodeaux, D.N., Kim, C., Cunningham, J., Hillman, E.M.C., Churchland, A., Paninski, L. (April 2020) Localized Semi-Nonnegative Matrix Factorization (LocaNMF) of Widefield Calcium Imaging Data. PLoS Comput Biol, 16 (4). e1007791. ISSN 1553-734x

Scheinker, V., Fiore, G., Di Cristo, C., Di Cosmo, A., d'Ischia, M., Enikolopov, G., Palumbo, A. (December 2005) Nitric oxide synthase in the nervous system and ink gland of the cuttlefish Sepia officinalis: molecular cloning and expression. Biochem Biophys Res Commun, 338 (2). pp. 1204-15. ISSN 0006-291X (Print)

Schiff, H., Bouhuis, A. L., Yu, K., Penzo, M. A., Li, H., He, M., Li, B. (February 2018) An insula-central amygdala circuit for guiding tastant-reinforced choice behavior. J Neurosci, 38 (6). pp. 1418-1429. ISSN 0270-6474

Schmitt, A., Fendt, M., Zink, M., Ebert, U., Starke, M., Berthold, M., Herb, A., Petroianu, G., Falkai, P., Henn, F. A. (February 2007) Altered NMDA receptor expression and behavior following postnatal hypoxia: potential relevance to schizophrenia. J Neural Transm, 114 (2). pp. 239-48. ISSN 0300-9564 (Print)0300-9564 (Linking)

Schulz, D., Southekal, S. S., Junnarkar, S. S., Pratte, J. F., Purschke, M. L., Stoll, S. P., Ravindranath, B., Maramraju, S. H., Krishnamoorthy, S., Henn, F. A., O'Connor, P., Woody, C. L., Schlyer, D. J., Vaska, P. (April 2011) Simultaneous assessment of rodent behavior and neurochemistry using a miniature positron emission tomograph. Nature Methods, 8 (4). pp. 347-352. ISSN 15487091 (ISSN)

Schwartz, Benjamin, Safir, Shelley Ray (May 1915) Habit formation in the fiddler crab. Journal of Animal Behavior, 53 (3). pp. 226-239.

Schwartz, Benjamin, Safir, Shelley Ray (June 1915) The natural history and behavior of the fiddler crab. Project Report. The Brooklyn Institute of Arts and Sciences, Brooklyn, NY.

Seely, J. S., Kaufman, M. T., Ryu, S. I., Shenoy, K. V., Cunningham, J. P., Churchland, M. M. (November 2016) Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. PLoS Comput Biol, 12 (11). e1005164. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Sekutowicz, M., Guggenmos, M., Kuitunen-Paul, S., Garbusow, M., Sebold, M., Pelz, P., Priller, J., Wittchen, H. U., Smolka, M. N., Zimmermann, U. S., Heinz, A., Sterzer, P., Schmack, K. (July 2019) Neural Response Patterns During Pavlovian-to-Instrumental Transfer Predict Alcohol Relapse and Young Adult Drinking. Biol Psychiatry (19). pp. 31513-6. ISSN 0006-3223

Shadlen, M. N., Hanks, T. D., Churchland, A. K., Kiani, R., Yang, T. J. (2007) The Speed and Accuracy of a Simple Perceptual Decision: A Mathematical Primer. In: Bayesian Brain: Probabilistic Approaches to Neural Coding (Computational Neuroscience). M. I. T. Press, Cambridge, MA, pp. 209-238. ISBN ISBN-10: 0-262-51601-2

Shea, S. D. (November 2011) Talk from Stephen Shea at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Shea, S. D., Katz, L. C., Mooney, R. (October 2008) Noradrenergic induction of odor-specific neural habituation and olfactory memories. Journal of Neuroscience, 28 (42). pp. 10711-9. ISSN 0270-6474

Shea, S. D., Koch, H., Baleckaitis, D., Ramirez, J. M., Margoliash, D. (February 2010) Neuron-Specific Cholinergic Modulation of a Forebrain Song Control Nucleus. Journal of Neurophysiology, 103 (2). pp. 733-745. ISSN 0022-3077

Shea, S. D., Margoliash, D. (March 2010) Behavioral state-dependent reconfiguration of song-related network activity and cholinergic systems. Journal of Chemical Neuroanatomy, 39 (2). pp. 132-140. ISSN 0891-0618

Shen, Yang, Dasgupta, Sanjoy, Navlakha, Saket (September 2023) Reducing Catastrophic Forgetting With Associative Learning: A Lesson From Fruit Flies. Neural Computation. pp. 1-23. ISSN 0899-7667

Shen, Y., Dasgupta, S., Navlakha, S. (May 2020) Habituation as a Neural Algorithm for Online Odor Discrimination. Proceedings of the National Academy of Sciences of the United States of America, 117 (22). pp. 12402-12410. ISSN 0027-8424

Shen, Y., Dasgupta, S., Navlakha, S. (August 2020) Reply to Semelidou and Skoulakis: "Short-term" habituation has multiple distinct mechanisms. Proc Natl Acad Sci U S A, 117 (34). pp. 20373-20374. ISSN 0027-8424

Sheppard, J. P., Raposo, D., Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6). ISSN 1534-7362 (Electronic)1534-7362 (Linking)

Sheppard, J. P., Raposo, D., Churchland, A. K. (August 2013) Tutorial and data for "Sheppard, J. P. and Raposo, D. and Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6).". [Dataset]

Sheppard, J. P., Ryan, M.B., Churchland, A. K. (November 2013) Optogenetic stimulation of visual inputs to posterior parietal cortex biases choice behavior of rats on a multisensory decision task. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Sheppard, J. P., Wang, J. P., Wong, P. C. M. (January 2011) Large-Scale Cortical Functional Organization and Speech Perception across the Lifespan. PLoS ONE, 6 (1). ISSN 1932-6203

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Shih, M. F., Dubnau, J. (October 2014) Converting drosophobia into Drosophila. Nature Neuroscience, 17 (11). pp. 1430-2. ISSN 1097-6256

Shuai, Y. C., Hu, Y., Qin, H. T., Campbell, R. A. A., Zhong, Y. (December 2011) Distinct molecular underpinnings of Drosophila olfactory trace conditioning. Proceedings of the National Academy of Sciences of the United States of America, 108 (50). pp. 20201-20206. ISSN 0027-8424

Shuvaev, Sergey, Amelchenko, Evgeny, Smagin, Dmitry, Kudryavtseva, Natalia, Enikolopov, Grigori, Koulakov, Alexei (March 2023) A normative theory of social conflict. (Submitted)

Shuvaev, Sergey A, Tran, Ngoc B, Stephenson-Jones, Marcus, Li, Bo, Koulakov, Alexei A (January 2021) Neural Networks With Motivation. Frontiers in Systems Neuroscience, 14. p. 609316. ISSN 1662-5137

Silva, Talita M, Borniger, Jeremy C, Alves, Michele Joana, Alzate Correa, Diego, Zhao, Jing, Fadda, Paolo, Toland, Amanda Ewart, Takakura, Ana C, Moreira, Thiago S, Czeisler, Catherine M, Otero, José Javier (April 2021) Machine learning approaches reveal subtle differences in breathing and sleep fragmentation in Phox2b-derived astrocytes ablated mice. Journal of Neurophysiology, 125 (4). pp. 1164-1179. ISSN 0022-3077

Smagin, D. A., Park, J. H., Michurina, T. V., Peunova, N., Glass, Z., Sayed, K., Bondar, N. P., Kovalenko, I. N., Kudryavtseva, N. N., Enikolopov, G. (December 2015) Altered Hippocampal Neurogenesis and Amygdalar Neuronal Activity in Adult Mice with Repeated Experience of Aggression. Front Neurosci, 9. p. 443. ISSN 1662-4548 (Print)1662-453X (Linking)

Smiley, Kristina O, Munley, Kathleen M, Aghi, Krisha, Lipshutz, Sara E, Patton, Tessa M, Pradhan, Devaleena S, Solomon-Lane, Tessa K, Sun, Simón ED (November 2023) Sex diversity in the 21st century: Concepts, frameworks, and approaches for the future of neuroendocrinology. Hormones and Behaviour, 157. p. 105445. ISSN 0018-506X

Spors, H., Albeanu, D. F., Murthy, V. N., Rinberg, D., Uchida, N., Wachowiak, M., Friedrich, R. W. (October 2012) Illuminating Vertebrate Olfactory Processing. Journal of Neuroscience, 32 (41). pp. 14102-14108. ISSN 0270-6474

Srinivasan, Shyam, Daste, Simon, Modi, Mehrab N, Turner, Glenn C, Fleischmann, Alexander, Navlakha, Saket (October 2023) Effects of stochastic coding on olfactory discrimination in flies and mice. PLoS Biology, 21 (10). e3002206. ISSN 1545-7885

Starosta, Sarah, Uengoer, Metin, Bartetzko, Isabelle, Lucke, Sara, Güntürkün, Onur, Stüttgen, Maik C (November 2016) Context specificity of both acquisition and extinction of a Pavlovian conditioned response. Learning & memory (Cold Spring Harbor, N.Y.), 23 (11). pp. 639-643. ISSN 1072-0502

Stephenson-Jones, M., Kardamakis, A. A., Robertson, B., Grillner, S. (September 2013) Independent circuits in the basal ganglia for the evaluation and selection of actions. Proceedings of the National Academy of Sciences of the United States of America, 110 (38). E3670-E3679. ISSN 0027-8424

Stephenson-Jones, M., Yu, K., Ahrens, S., Tucciarone, J. M., van Huijstee, A. N., Mejia, L. A., Penzo, M. A., Tai, L. H., Wilbrecht, L., Li, B. (November 2016) A basal ganglia circuit for evaluating action outcomes. Nature, 539 (7628). pp. 289-293. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Stephenson-Jones, M., Bravo-Rivera, C., Ahrens, S., Furlan, A., Xiao, X., Fernandes-Henriques, C., Li, B. (January 2020) Opposing Contributions of GABAergic and Glutamatergic Ventral Pallidal Neurons to Motivational Behaviors. Neuron. ISSN 0896-6273

Sternson, S. M., Shepherd, G. M. G., Friedman, J. M. (October 2005) Topographic mapping of VMH -> arcuate nucleus microcircuits and their reorganization by fasting. Nature Neuroscience, 8 (10). pp. 1356-1363. ISSN 1097-6256

Surbhi, . , Borniger, J. C., Russart, K. L. G., Zhang, N., Magalang, U. J., Nelson, R. J. (February 2019) miR-155 deletion modulates lipopolysaccharide-induced sleep in female mice. Chronobiol Int, 36 (2). pp. 188-202. ISSN 1525-6073 (Electronic)0742-0528 (Linking)

T

Tchernichovski, O., Lints, T. J., Deregnaucourt, S., Cimenser, A., Mitra, P. P. (2004) Studying the song development process rationale and methods. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 348-363. ISBN 0077-8923

The International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolò, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Hausser, Michael, Hofer, Sonja, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Inês, Mainen, Zachary, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Sanders, Josh, Socha, Karolina, Terry, Rebecca, Urai, Anne, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana, Wool, Lauren, Zador, Anthony (January 2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv. (Unpublished)

Thirumalai, V., Cline, H. T. (March 2008) A commanding control of behavior. Nat Neurosci, 11 (3). pp. 246-8.

Thirumalai, Vatsala, Cline, Hollis T. (September 2008) Endogenous dopamine suppresses initiation of swimming in pre-feeding zebrafish larvae. J Neurophysiol, 100 (3). pp. 1635-1648.

Trejo, Diego E Hernandez, Ciuparu, Andrei, da Silva, Pedro Garcia, Velasquez, Cristina M, Rebouillat, Benjamin, Gross, Michael, Davis, Martin B, Mureayan, Raul C, Albeanu, Dinu F (2023) Cortical-bulbar Feedback Supports Behavioral Flexibility During Rule Reversal. In: UNSPECIFIED.

Trejo, Diego Hernandez, Ciuparu, Andrei, da Silva, Pedro Garcia, Velasquez, Cristina M, Rebouillat, Benjamin, Gross, Michael D, Davis, Martin B, Muresan, Raul C, Albeanu, Dinu F (September 2023) Fast updating feedback from piriform cortex to the olfactory bulb relays multimodal reward contingency signals during rule-reversal. bioRxiv. (Submitted)

Tully, T. (February 2003) Pavlov's dogs. Current Biology, 13 (4). R117-R119.

Turner, G. C. (November 2012) Talk from Glenn Turner at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

U

Uchida, N., Mainen, Z. F. (2007) Odor concentration invariance by chemical ratio coding. Front Syst Neurosci, 1. p. 3.

Uchida, N., Mainen, Z. F. (November 2003) Speed and accuracy of olfactory discrimination in the rat. Nature Neuroscience, 6 (11). pp. 1224-9. ISSN 1097-6256

Uchida, N., Takahashi, Y. K., Tanifuji, M., Mori, K. (October 2000) Odor maps in the mammalian olfactory bulb: domain organization and odorant structural features. Nature Neuroscience, 3 (10). pp. 1035-1043. ISSN 1097-6256

Urai, Anne E, Aguillon-Rodriguez, Valeria, Laranjeira, Inês C, Cazettes, Fanny, International Brain Laboratory, Mainen, Zachary F, Churchland, Anne K (January 2021) Citric Acid Water as an Alternative to Water Restriction for High-Yield Mouse Behavior. eNeuro, 8 (1). pp. 1-8. ISSN 2373-2822

Urai, Anne E, Doiron, Brent, Leifer, Andrew M, Churchland, Anne K (January 2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience. ISSN 1097-6256

V

Valente, D., Wang, H., Andrews, P., Mitra, P. P. (October 2007) Characterizing animal behavior through audio and video signal processing. IEEE Multimedia, 14 (4). pp. 32-41. ISSN 1070-986X

Velbinger, K., De Vry, J., Jentzsch, K., Eckert, A., Henn, F., Muller, W. E. (July 2000) Acute stress induced modifications of calcium signaling in learned helpless rats. Pharmacopsychiatry, 33 (4). pp. 132-7. ISSN 0176-3679 (Print)0176-3679 (Linking)

Vigilant, L., Roy, J., Bradley, B. J., Stoneking, C. J., Robbins, M. M., Stoinski, T. S. (May 2015) Reproductive competition and inbreeding avoidance in a primate species with habitual female dispersal. Behavioral Ecology and Sociobiology, 69 (7). pp. 1163-1172. ISSN 03405443

Vollmayr, B., Bachteler, D., Vengeliene, V., Gass, P., Spanagel, R., Henn, F. (April 2004) Rats with congenital learned helplessness respond less to sucrose but show no deficits in activity or learning. Behav Brain Res, 150 (1-2). pp. 217-21. ISSN 0166-4328 (Print)0166-4328 (Linking)

Vollmayr, B., Faust, H., Lewicka, S., Henn, F. A. (July 2001) Brain-derived-neurotrophic-factor (BDNF) stress response in rats bred for learned helplessness. Mol Psychiatry, 6 (4). 471-4, 358. ISSN 1359-4184 (Print)1359-4184 (Linking)

Vollmayr, B., Henn, F. A. (August 2001) Learned helplessness in the rat: improvements in validity and reliability. Brain Research Protocols, 8 (1). pp. 1-7. ISSN 1385-299X (Print)1385-299X (Linking)

Vollmayr, B., Simonis, C., Weber, S., Gass, P., Henn, F. (November 2003) Reduced cell proliferation in the dentate gyrus is not correlated with the development of learned helplessness. Biol Psychiatry, 54 (10). pp. 1035-40. ISSN 0006-3223 (Print)0006-3223 (Linking)

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

W

Wang, Julia Huiming (June 2023) Interpretable Brain State Manifold for Characterizing Heterogeneity. PhD thesis, Cold Spring Harbor Laboratory.

Wang, Y. L., Chiang, A. S., Xia, S. Z., Kitamoto, T., Tully, T., Zhong, Y. (October 2003) Blockade of neurotransmission in Drosophila mushroom bodies impairs odor attraction, but not repulsion. Current Biology, 13 (21). pp. 1900-1904. ISSN 0960-9822

Wang, Bor-Shuen, Bernardez Sarria, Maria Sol, An, Xu, He, Miao, Alam, Nazia M, Prusky, Glen T, Crair, Michael C, Huang, Z Josh (February 2021) Retinal and Callosal Activity-Dependent Chandelier Cell Elimination Shapes Binocularity in Primary Visual Cortex. Neuron, 109 (3). 502-515.e7. ISSN 0896-6273

Wilbrecht, L., Kirn, J. R. (June 2004) Neuron addition and loss in the song system: regulation and function. Documentation. NY Academy of Sciences.

Wilbrecht, L., Williams, H., Gangadhar, N., Nottebohm, F. (September 2006) High levels of new neuron addition persist when the sensitive period for song learning is experimentally prolonged. Journal of Neuroscience, 26 (36). pp. 9135-9141. ISSN 02706474

Williams, R. W., Dubnau, J. T., Enoch, M. A., Flaherty, L., Sluyter, F., Gannon, K. S., Maxson, S. C., Riedl, C. A. L., Williams, K. D., Holmes, A., Bolivar, V. J., Crusio, W. E. (May 2002) Hot topics in behavioral and neural genetics. Genes Brain and Behavior, 1 (2). pp. 117-130. ISSN 1601-1848

Womelsdorf, T., Fries, P., Mitra, P. P., Desimone, R. (2006) Gamma-band synchronization in visual cortex predicts speed of change detection. Nature, 439 (7077). pp. 733-736. ISSN 00280836

Wu, M. V., Luna, V. M., Hen, R. (August 2015) Running rescues a fear-based contextual discrimination deficit in aged mice. Front Syst Neurosci, 9. p. 114. ISSN 1662-5137 (Electronic)1662-5137 (Linking)

Wu, M. V., Manoli, D. S., Fraser, E. J., Coats, J. K., Tollkuhn, J., Honda, S., Harada, N., Shah, N. M. (October 2009) Estrogen masculinizes neural pathways and sex-specific behaviors. Cell, 139 (1). pp. 61-72. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

X

Xia, Ruobing, Chen, Xiaomo, Engel, Tatiana A, Moore, Tirin (February 2024) Common and distinct neural mechanisms of attention. Trends in Cognitive Sciences. ISSN 1364-6613

Xiao, X., Deng, H., Furlan, A., Yang, T., Zhang, X., Hwang, G. R., Tucciarone, J., Wu, P., He, M., Palaniswamy, R., Ramakrishnan, C., Ritola, K., Hantman, A., Deisseroth, K., Osten, P., Huang, Z. J., Li, B. (October 2020) A Genetically Defined Compartmentalized Striatal Direct Pathway for Negative Reinforcement. Cell, 183 (1). 211-227.e20. ISSN 0092-8674

Xie, Yunyao, Huang, Longwen, Corona, Alberto, Pagliaro, Alexa H, Shea, Stephen D (December 2022) A dopaminergic reward prediction error signal shapes maternal behavior in mice. Neuron. S0896-6273(22)01073. ISSN 0896-6273

Y

Yan, H., Li, B., Wang, J. (April 2019) Non-equilibrium landscape and flux reveal how the central amygdala circuit gates passive and active defensive responses. J R Soc Interface, 16 (153). p. 20180756. ISSN 1742-5662

Yoles-Frenkel, Michal, Shea, Stephen D, Davison, Ian G, Ben-Shaul, Yoram (August 2022) The Bruce effect: Representational stability and memory formation in the accessory olfactory bulb of the female mouse. Cell Reports, 40 (8). p. 111262. ISSN 2211-1247

Yu, C., Horev, G., Rubin, N., Derdikman, D., Haidarliu, S., Ahissar, E. (March 2015) Coding of object location in the vibrissal thalamocortical system. Cereb Cortex, 25 (3). pp. 563-77. ISSN 1460-2199 (Electronic)1047-3211 (Linking)

Yu, K., Garcia da Silva, P., Albeanu, D. F., Li, B. (June 2016) Central Amygdala Somatostatin Neurons Gate Passive and Active Defensive Behaviors. J Neurosci, 36 (24). pp. 6488-96. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Z

Zador, A. M. (November 2012) Talk from Tony Zador at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Zador, A. M. (August 2019) A critique of pure learning and what artificial neural networks can learn from animal brains. Nat Commun, 10 (1). p. 3770. ISSN 2041-1723

Zariwala, H. A., Kepecs, A., Uchida, N., Hirokawa, J., Mainen, Z. F. (2013) The Limits of Deliberation in a Perceptual Decision Task. Neuron, 78 (2). pp. 339-51. ISSN 08966273 (ISSN)

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas A, Gieselmann, Marc A, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana A (April 2023) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. Nature Communications, 14 (1). p. 1858. ISSN 2041-1723

Zhang, Anqi, Zador, Anthony M (December 2023) Neurons in the primary visual cortex of freely moving rats encode both sensory and non-sensory task variables. PLoS Biology, 21 (12). e3002384. ISSN 1545-7885

Zhang, Chao, Burger, R Michael (June 2024) Cholinergic modulation in the vertebrate auditory pathway. Frontiers in Cellular Neuroscience, 18. p. 1414484. ISSN 1662-5102

Zhang, Anqi (July 2020) Representations in Rodent Primary Visual Cortex During Visual Discrimination. PhD thesis, Cold Spring Harbor.

Zhang, Xian, Guan, Wuqiang, Yang, Tao, Furlan, Alessandro, Xiao, Xiong, Yu, Kai, An, Xu, Galbavy, William, Ramakrishnan, Charu, Deisseroth, Karl, Ritola, Kimberly, Hantman, Adam, He, Miao, Josh Huang, Z, Li, Bo (October 2021) Genetically identified amygdala-striatal circuits for valence-specific behaviors. Nature Neuroscience, 24. pp. 1586-1600. ISSN 1097-6256

Zhong, Y. (1996) Behavior-specific genes? Trends in Genetics, 12 (3). pp. 116-117. ISSN 01689525 (ISSN)

Zhou, C., Franconville, R., Vaughan, A. G., Robinett, C. C., Jayaraman, V., Baker, B. S. (September 2015) Central neural circuitry mediating courtship song perception in male. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)