Items where Year is 2007

Group by: Authors | Item Type | No Grouping
Number of items: 333.

Agaram, N. P., Besmer, P., Wong, G. C., Guo, T., Socci, N. D., Maki, R. G., DeSantis, D., Brennan, M. F., Singer, S., DeMatteo, R. P., Antonescu, C. R. (January 2007) Pathologic and molecular heterogeneity in imatinib-stable or imatinib-responsive gastrointestinal stromal tumors. Clin Cancer Res, 13 (1). pp. 170-81. ISSN 1078-0432 (Print)1078-0432 (Linking)

Aizenman, C. D., Cline, H. T. (April 2007) Enhanced visual activity in vivo forms nascent synapses in the developing retinotectal projection. J Neurophysiol, 97 (4). pp. 2949-57. ISSN 0022-3077 (Print)

Akerman, C. J., Cline, H. T. (August 2007) Refining the roles of GABAergic signaling during neural circuit formation. Trends in Neurosciences, 30 (8). pp. 382-389. ISSN 0166-2236

Allemand, E., Hastings, M. L., Murray, M. V., Myers, M. P., Krainer, A. R. (July 2007) Alternative splicing regulation by interaction of phosphatase PP2Cgamma with nucleic acid-binding protein YB-1. Nat Struct Mol Biol, 14 (7). pp. 630-638. ISSN 1545-9993 (Print)

Aravin, A. A., Hannon, G. J., Brennecke, J. (November 2007) The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race. Science, 318 (5851). pp. 761-764. ISSN 1095-9203 (Electronic)

Aravin, A. A., Sachidanandam, R., Girard, A., Fejes-Toth, K., Hannon, G. J. (May 2007) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science, 316 (5825). pp. 744-7. ISSN 1095-9203 (Electronic)

Arevalo, J. C., Takahashi, T., Wu, S. H., Chao, M. V. (June 2007) Retention of GluR1 receptors by ARMS/Kidins220 protein results in changes in synaptic activity. Journal of Neurochemistry, 101. pp. 48-49. ISSN 0022-3042

Arnaiz, Olivier, Cain, Scott, Cohen, Jean, Sperling, Linda (January 2007) ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. Nucleic Acids Res, 35. D439-D444. ISSN 0305-1048

Asari, H. (2007) Auditory System Characterization. PhD thesis, Cold Spring Harbor Laboratory.

Asztalos, Z., Arora, N., Tully, T. (January 2007) Olfactory jump reflex habituation in Drosophila and effects of classical conditioning mutations. J Neurogenet, 21 (1). pp. 1-18. ISSN 0167-7063 (Print)

Asztalos, Z., Baba, K., Yamamoto, D., Tully, T. (January 2007) The Fickle mutatation of a cytoplasmic tyrosine kinase effects sensitization but not dishabituation in Drosophila melanogaster. J Neurogenet, 21 (1). pp. 59-71. ISSN 0167-7063 (Print)

Atwal, G. S., Bond, G. L., Metsuyanim, S., Papa, M., Friedman, E., Distelman-Menachem, T., Ben Asher, E., Lancet, D., Ross, D. A., Sninsky, J., White, T. J., Levine, A. J., Yarden, R. (March 2007) Haplotype structure and selection of the MDM2 oncogene in humans. Proc Natl Acad Sci U S A, 104 (11). pp. 4524-9. ISSN 0027-8424 (Print) 0027-8424 (Linking)

Atwal, G. S. (2007) Correlations in Complex Disease Association Studies. Society for Industrial and Applied Mathematics.

Bagchi, A., Papazoglu, C., Wu, Y., Capurso, D., Brodt, M., Francis, D., Bredel, M., Vogel, H., Mills, A. A. (2007) CHD5 Is a Tumor Suppressor at Human 1p36. Cell, 128 (3). pp. 459-475.

Bannigan, A., Scheible, W. R., Lukowitz, W., Fagerstrom, C., Wadsworth, P., Somerville, C., Baskin, T. I. (August 2007) A conserved role for kinesin-5 in plant mitosis. Journal of Cell Science, 120 (16). pp. 2819-2827. ISSN 0021-9533

Barral, K., Moorhouse, A. D., Moses, J. E. (April 2007) Efficient conversion of aromatic amines into azides: a one-pot synthesis of triazole linkages. Org Lett, 9 (9). pp. 1809-11. ISSN 1523-7060 (Print)1523-7052

Bassuner, B. M., Lam, R., Lukowitz, W., Yeung, E. C. (January 2007) Auxin and root initiation in somatic embryos of Arabidopsis. Plant Cell Reports, 26 (1). pp. 1-11. ISSN 0721-7714

Bieri, T., Blasiar, D., Ozersky, P., Antoshechkin, I., Bastiani, C., Canaran, P., Chan, J., Chen, N., Chen, W. J., Davis, P., Fiedler, T. J., Girard, L. R., Han, M., Harris, T. W., Kishore, R., Lee, R., McKay, S. J., Müller, H- M., Nakamura, C., Petcherski, A., Rangarajan, A., Rogers, A., Schindelman, G., Schwarz, E. M., Spooner, W., Tuli, M. A., Van Auken, K., Wang, D., Wang, X., Williams, G., Durbin, R., Stein, L. D., Sternberg, P. W., Spieth, J. (January 2007) WormBase: new content and better access. Nucleic Acids Res, 35 (Databa). D506-D510. ISSN 0305-1048

Bihani, Teeru, Chicas, Agustin, Lo, Crystal Pui-Kwan, Lin, Athena W. (January 2007) Dissecting the senescence-like program in tumor cells activated by Ras signaling. Journal of Biological Chemistry, 282 (4). pp. 2666-2675. ISSN 0021-9258

Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P., Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Siepel, A. C. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447 (7146). pp. 799-816. ISSN 00280836 (ISSN)

Bish, Rebecca A. (2007) A Novel Role for the Ubiquitin-Binding Zinc Finger Domain in DNA Repair. PhD thesis, Cold Spring Harbor Laboratory.

Bish, Rebecca A., Myers, Michael P. (August 2007) Werner helicase interacting protein 1 (WRNIP1) binds polyubiquitin via its zinc finger domain. J Biol Chem, 282 (32). pp. 23184-23193. ISSN 0021-9258 (Print)

Black, S. M., Kumar, S., Wiseman, D., Ravi, K., Wedgwood, S., Ryzhov, V., Fineman, J. R. (2007) Pediatric pulmonary hypertension: Roles of endothelin-1 and nitric oxide. Clinical Hemorheology and Microcirculation, 37 (1-2). pp. 111-120. ISSN 1386-0291

Boccara, M., Sarazin, A., Billoud, B., Jolly, V., Martienssen, R., Baulcombe, D., Colot, V. (October 2007) New approaches for the analysis of Arabidopsis thaliana small RNAs. Biochimie, 89 (10). pp. 1252-6. ISSN 0300-9084 (Print)

Boettner, B., Van Aelst, L. (November 2007) The Rap GTPase Activator Drosophila PDZ-GEF Regulates Cell Shape in Epithelial Migration and Morphogenesis. Mol Cell Biol, 27 (22). pp. 7966-7980. ISSN 0270-7306 (Print)

Bokil, H. S., Mitra, P. P. (2007) Non-parametric methods for the analysis of neurobiological time-series data. 46th IEEE Conference on Decision and Control, 2007. pp. 5833-5838.

Bokil, H. S., Purpura, K., Schoffelen, J. M., Thomson, D., Mitra, P. P. (January 2007) Comparing spectra and coherences for groups of unequal size. J Neurosci Methods, 159 (2). pp. 337-45. ISSN 0165-0270 (Print)

Bolduc, F. V. (October 2007) Role of Drosophila Fragile X mental retardation protein and the RNA interference pathway in Drosophila learning and memory. PhD thesis, Cold Spring Harbor Laboratory.

Bosco, E. E., Wang, Y., Xu, H., Zilfou, J. T., Knudsen, K. E., Aronow, B. J., Lowe, S. W., Knudsen, E. S. (January 2007) The retinoblastoma tumor suppressor modifies the therapeutic response of breast cancer. J Clin Invest, 117 (1). pp. 218-228. ISSN 0021-9738 (Print)

Brennecke, J., Aravin, A. A., Stark, A., Dus, M., Kellis, M., Sachidanandam, R., Hannon, G. J. (March 2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell, 128 (6). pp. 1089-103. ISSN 0092-8674 (Print)

Brower-Toland, B., Findley, S. D., Jiang, L., Liu, L., Yin, H., Dus, M., Zhou, P., Elgin, S. C., Lin, H. (September 2007) Drosophila PIWI associates with chromatin and interacts directly with HP1a. Genes Dev, 21 (18). pp. 2300-11. ISSN 0890-9369 (Print)0890-9369

Buratti, E., Chivers, M., Královičová, J., Romano, M., Baralle, M., Krainer, Adrian R., Vořechovský, I. (June 2007) Aberrant 5' splice sites in human disease genes: mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization. Nucleic Acids Res, 35 (13). pp. 4250-4263. ISSN 1362-4962 (Electronic)

Burgess, D. J. (2007) RNAi Genetic Screens for Chemotherapy Response Modifier Genes. PhD thesis, Cold Spring Harbor Laboratory.

Caceres, J. F., Krainer, A. R., Kornblihtt, A. R. (August 2007) The pathology of pre-mRNA splicing: a meeting in the Italian Alps - Workshop on pre-mRNA processing and disease. Embo Reports, 8 (8). pp. 730-734. ISSN 1469-221X

Canter, R. J., Qin, L. X., Downey, R. J., Brennan, M. F., Singer, S., Maki, R. G. (November 2007) Perioperative chemotherapy in patients undergoing pulmonary resection for metastatic soft-tissue sarcoma of the extremity : a retrospective analysis. Cancer, 110 (9). pp. 2050-60. ISSN 0008-543X (Print)0008-543X (Linking)

Carlton, J. M., Hirt, R. P., Silva, J. C., Delcher, A. L., Schatz, M., Zhao, Q., Wortman, J. R., Bidwell, S. L., Alsmark, U. C. M., Besteiro, S., Sicheritz-Ponten, T., Noel, C. J., Dacks, J. B., Foster, P. G., Simillion, C., Van De Peer, Y., Miranda-Saavedra, D., Barton, G. J., Westrop, G. D., Müller, S., Dessi, D., Fiori, P. L., Ren, Q., Paulsen, I., Zhang, H., Bastida-Corcuera, F. D., Simoes-Barbosa, A., Brown, M. T., Hayes, R. D., Mukherjee, M., Okumura, C. Y., Schneider, R., Smith, A. J., Vanacova, S., Villalvazo, M., Haas, B. J., Pertea, M., Feldblyum, T. V., Utterback, T. R., Shu, C. L., Osoegawa, K., De Jong, P. J., Hrdy, I., Horvathova, L., Zubacova, Z., Dolezal, P., Malik, S. B., Logsdon Jr, J. M., Henze, K., Gupta, A., Wang, C. C., Dunne, R. L., Upcroft, J. A., Upcroft, P., White, O., Salzberg, S. L., Tang, P., Chiu, C. H., Lee, Y. S., Embley, T. M., Coombs, G. H., Mottram, J. C., Tachezy, J., Fraser-Liggett, C. M., Johnson, P. J. (2007) Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science, 315 (5809). pp. 207-212. ISSN 00368075 (ISSN)

Carmell, M. A., Girard, A., van de Kant, H. J. G., Bourc'his, D., Bestor, T. H., de Rooij, D. G., Hannon, G. J. (April 2007) MIWI2 Is Essential for Spermatogenesis and Repression of Transposons in the Mouse Male Germline. Developmental Cell, 12 (4). pp. 503-514.

Celikel, T., Marx, V., Freudenberg, F., Zivkovic, A., Resnik, E., Hasan, M. T., Licznerski, P., Osten, P., Rozov, A., Seeburg, P. H., Schwarz, M. K. (November 2007) Select overexpression of homer1a in dorsal hippocampus impairs spatial working memory. Frontiers in Neuroscience, 1 (1). pp. 97-110. ISSN 16624548

Chabes, A., Stillman, B. (January 2007) Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America, 104 (4). pp. 1183-1188. ISSN 0027-8424

Chattopadhyaya, B., Di Cristo, G., Wu, C. Z., Knott, G., Kuhlman, S. J., Fu, Y., Palmiter, R. D., Huang, Z. J. (June 2007) GAD67-mediated GABA synthesis and signaling regulate inhibitory synaptic innervation in the visual cortex. Neuron, 54 (6). pp. 889-903. ISSN 0896-6273 (Print)

Cheloufi, Sihem, Hannon, Gregory J. (June 2007) Investigating the role of the argonautes during mouse embryogenesis. In: Developmental Biology.

Chen, B. L. (2007) Neuronal Network of C. elegans: from Anatomy to Behavior. PhD thesis, Cold Spring Harbor Laboratory.

Chen, Y. H., Li, H. J., Shi, D. Q., Yuan, L., Liu, J., Sreenivasan, R., Baskar, R., Grossniklaus, U., Yang, W. C. (November 2007) The central cell plays a critical role in pollen tube guidance in Arabidopsis. Plant Cell, 19 (11). pp. 3563-3577. ISSN 1040-4651

Cheung, W., Bluth, M. J., Khan, S., Johns, C., Lin, Y. Y., Zenilman, M. E., Bluth, M. H. (June 2007) Peripheral blood mononuclear cell gene array profiles in female patients with involuntary bladder contractions. International Urogynecology Journal, 18. S88-S88. ISSN 0937-3462

Chitwood, D. H., Guo, M., Nogueira, F. T. S., Timmermans, M. C. P. (March 2007) Establishing leaf polarity: the role of small RNAs and positional signals in the shoot apex. Development, 134 (5). pp. 813-23. ISSN 0950-1991 (Print)

Chitwood, D. H., Timmermans, M. C. P. (August 2007) Target mimics modulate miRNAs. Nat Genet, 39 (8). pp. 935-6. ISSN 1061-4036 (Print)

Choe, L., D'Ascenzo, M., Relkin, N. R., Pappin, D., Ross, P., Williamson, B., Guertin, S., Pribil, P., Lee, K. H. (October 2007) 8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease. Proteomics, 7 (20). pp. 3651-60. ISSN 1615-9853 (Print)1615-9853 (Linking)

Chou, S. T., Bailey, C. L., Hardison, R. C., Blobel, G. A., Vakoc, C. R., Weiss, M. J. (November 2007) GATA-1 represses PU.1/Sfpi-1 gene transcription in erythroMegakaryocytic progenitors. Blood, 110 (11). 371A-371A. ISSN 0006-4971

Churchland, A. K., Huang, X., Lisberger, S. G. (January 2007) Responses of neurons in the medial superior temporal visual area to apparent motion stimuli in macaque monkeys. Journal of Neurophysiology, 97 (1). pp. 272-282. ISSN 00223077 (ISSN)

Churchland, A. K., Shadlen, M. N. (2007) Decision-Making and Vision. In: The New Encyclopedia of Neuroscience. Elsevier.

Ciarrocchi, A., Jankovic, V., Shaked, Y., Nolan, D. J., Mittal, V., Kerbel, R. S., Nimer, S. D., Benezra, R. (2007) Id1 Restrains p21 Expression to Control Endothelial Progenitor Cell Formation. PLoS ONE, 2 (12). e1338. ISSN 1932-6203 (Electronic)

Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W., Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. C. L., Gardiner, A., Garfield, D. A., Garvin, B. E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A. J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E. A., Haerty, W., Hahn, M. W., Halligan, D. L., Halpern, A. L., Halter, G. M., Han, M. V., Heger, A., Hillier, L., Hinrichs, A. S., Holmes, I., Hoskins, R. A., Hubisz, M. J., Hultmark, D., Huntley, M. A., Jaffe, D. B., Jagadeeshan, S. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450 (7167). pp. 203-218. ISSN 00280836 (ISSN)

Cokol, M., Iossifov, I., Rodriguez-Esteban, R., Rzhetsky, A. (May 2007) How many scientific papers should be retracted? EMBO Rep, 8 (5). pp. 422-3. ISSN 1469-221X (Print)1469-221X (Linking)

Das, D., Zhang, M. Q. (2007) Predictive models in gene regulation. Methods Mol Biol, 377. pp. 95-110. ISSN 978-1-59745-390-5

Das, R., Yu, J., Zhang, Z., Gygi, M. P., Krainer, A. R., Gygi, S. P., Reed, R. (June 2007) SR proteins function in coupling RNAP II transcription to pre-mRNA splicing. Molecular Cell, 26 (6). pp. 867-881. ISSN 1097-2765

Day, K., Shefer, G., Richardson, J. B., Enikolopov, G. N., Yablonka-Reuveni, Z. (April 2007) Nestin-GFP reporter expression defines the quiescent state of skeletal muscle satellite cells. Developmental Biology, 304 (1). pp. 246-259. ISSN 0012-1606

DeCoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (May 2007) Oscillations of local field potentials in the rat dorsal striatum during spontaneous and instructed behaviors. Journal of Neurophysiology, 97 (5). pp. 3800-3805. ISSN 0022-3077

DeMatteo, R. P., Maki, R. G., Singer, S., Gonen, M., Brennan, M. F., Antonescu, C. R. (March 2007) Results of tyrosine kinase inhibitor therapy followed by surgical resection for metastatic gastrointestinal stromal tumor. Ann Surg, 245 (3). pp. 347-52. ISSN 0003-4932 (Print)0003-4932 (Linking)

DeWeese, M. R. (January 2007) Whole-cell recording in vivo. Curr Protoc Neurosci (chap 6). Unit 6.22. ISSN 1934-8576 (Electronic)

Decoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (March 2007) Learning-related coordination of striatal and hippocampal theta rhythms during acquisition of a procedural maze task. Proc Natl Acad Sci U S A, 104 (13). pp. 5644-9. ISSN 0027-8424 (Print)

Demas, J., Cline, H. T. (January 2007) The blu Blur: mutation of a vesicular glutamate transporter reduces the resolution of zebrafish vision. Neuron, 53 (1). pp. 4-6. ISSN 0896-6273 (Print)

Denissov, S., Van Driel, M., Voit, R., Hekkelman, M., Hulsen, T., Hernandez, N., Grummt, I., Wehrens, R., Stunnenberg, H. (February 2007) Identification of novel functional TBP-binding sites and general factor repertoires. Embo Journal, 26 (4). pp. 944-954. ISSN 0261-4189

Denoeud, F., Kapranov, P., Ucla, C., Frankish, A., Castelo, R., Drenkow, J., Lagarde, J., Alioto, T., Manzano, C., Chrast, J., Dike, S., Wyss, C., Henrichsen, C. N., Holroyd, N., Dickson, M. C., Taylor, R., Hance, Z., Foissac, S., Myers, R. M., Rogers, J., Hubbard, T., Harrow, J., Guigó, R., Gingeras, T. R., Antonarakis, S. E., Reymond, A. (2007) Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Research, 17 (6). pp. 746-759. ISSN 10889051 (ISSN) (Public Dataset)

Desjardins, C. A., Gundersen-Rindal, D. E., Hostetler, J. B., Tallon, L. J., Fuester, R. W., Schatz, M. C., Pedroni, M. J., Fadrosh, D. W., Haas, B. J., Toms, B. S., Chen, D., Nene, V. (2007) Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus. BMC Microbiology, 7. ISSN 14712180 (ISSN)

Di Cristo, C., Fiore, G., Scheinker, V., Enikolopov, G. N., d'Ischia, M., Palumbo, A., Di Cosmo, A. (September 2007) Nitric oxide synthase expression in the central nervous system of Sepia officinalis: an in situ hybridization study. European Journal of Neuroscience, 26 (6). pp. 1599-1610. ISSN 0953-816X

Di Cristo, G., Chattopadhyaya, B., Kuhlman, S. J., Fu, Y., Belanger, M-C., Wu, C. Z., Rutishauser, U., Maffei, L., Huang, Z. J. (December 2007) Activity-dependent PSA expression regulates inhibitory maturation and onset of critical period plasticity. Nat Neurosci, 10 (12). pp. 1569-1577.

Dickins, R. A., McJunkin, K., Hernando, E., Premsrirut, P. K., Krizhanovsky, V., Burgess, D. J., Kim, S. Y., Cordon-Cardo, C., Zender, L., Hannon, G. J., Lowe, S. W. (July 2007) Tissue-specific and reversible RNA interference in transgenic mice. Nat Genet, 39 (7). 914 - 921. ISSN 1061-4036 (Print)

Dilmanian, F. A., Qu, Y., Feinendegen, L. E., Pena, L. A., Bacarian, T., Henn, F. A., Kalef-Ezra, J., Liu, S., Zhong, Z., McDonald, J. W. (April 2007) Tissue-sparing effect of x-ray microplanar beams particularly in the CNS: is a bystander effect involved? Experimental Hematology, 35 (4 Supp). pp. 69-77. ISSN 0301472X

Draviam, V. M., Stegmeier, F., Nalepa, G., Sowa, M. E., Chen, J., Liang, A., Hannon, G. J., Sorger, P. K., Harper, J. W., Elledge, S. J. (May 2007) A functional genomic screen identifies a role for TAO1 kinase in spindle-checkpoint signalling. Nature Cell Biology, 9 (5). pp. 556-564. ISSN 1465-7392

Duelli, D., Lazebnik, Y. (December 2007) Cell-to-cell fusion as a link between viruses and cancer. Nat Rev Cancer, 7 (12). pp. 968-76. ISSN 1474-1768 (Electronic)

Duelli, D. M., Padilla-Nash, H. M., Berman, D., Murphy, K. M., Ried, T., Lazebnik, Y. (March 2007) A virus causes cancer by inducing massive chromosomal instability through cell fusion. Current Biology, 17 (5). pp. 431-7. ISSN 0960-9822 (Print)

Dumitriu, D., Cossart, R., Huang, Z. J., Yuste, R. (January 2007) Correlation between axonal morphologies and synaptic input kinetics of interneurons from mouse visual cortex. Cerebral Cortex, 17 (1). pp. 81-91. ISSN 1047-3211

Dura, J. M., Preat, T., Tully, T. (October 2007) Identification of linotte, a new gene affecting learning and memory in Drosophila melanogaster. Journal of Neurogenetics, 21 (4). pp. 307-320. ISSN 0167-7063

Egan, C. M., Sridhar, S., Wigler, M. H., Hall, I. M. (November 2007) Recurrent DNA copy number variation in the laboratory mouse. Nat Genet, 39 (11). pp. 1384-9. ISSN 1061-4036 (Print)

Egeblad, M., Shen, H. C. J., Behonick, D. J., Wilmes, L., Eichten, A., Korets, L. V., Kheradmand, F., Werb, Z., Coussens, L. M. (2007) Type I collagen is a genetic modifier of matrix metalloproteinase 2 in murine skeletal development. Developmental Dynamics, 236 (6). pp. 1683-1693. ISSN 10588388 (ISSN)

Ehrlich, I., Klein, M. E., Rumpel, S., Malinow, R. (March 2007) PSD-95 is required for activity-driven synapse stabilization. Proc Natl Acad Sci U S A, 104 (10). pp. 4176-81. ISSN 0027-8424 (Print)

Eichler, E. E., Nickerson, D. A., Altshuler, D., Bowcock, A. M., Brooks, L. D., Carter, N. P., Church, D. M., Felsenfeld, A., Guyer, M., Lee, C., Lupski, J. R., Mullikin, J. C., Pritchard, J. K., Sebat, J., Sherry, S. T., Smith, D., Valle, D., Waterston, R. H. (May 2007) Completing the map of human genetic variation. Nature, 447 (7141). pp. 161-165. ISSN 0028-0836

Eilber, F. C., Brennan, M. F., Eilber, F. R., Eckardt, J. J., Grobmyer, S. R., Riedel, E., Forscher, C., Maki, R. G., Singer, S. (July 2007) Chemotherapy is associated with improved survival in adult patients with primary extremity synovial sarcoma. Ann Surg, 246 (1). pp. 105-13. ISSN 0003-4932 (Print)0003-4932 (Linking)

Ellis, L., Lindemann, R., Newbold, A., Whitecross, K., Cluse, L., Pelligrini, M., Wei, A., Scott, C., Atadja, P., Lowe, S. W., Johnstone, R. W. (December 2007) Characterization of the apoptotic and therapeutic activities of the histone deacetylase inhibitors LAQ824 and LBH589 using a mouse model of B cell lymphoma. Molecular Cancer Therapeutics, 6 (11). 3475S-3476S. ISSN 1535-7163

Ende, G., Demirakca, T., Walter, S., Wokrina, T., Sartorius, A., Wildgruber, D., Henn, F. A. (February 2007) Subcortical and medial temporal MR-detectable metabolite abnormalities in unipolar major depression. Eur Arch Psychiatry Clin Neurosci, 257 (1). pp. 36-9. ISSN 0940-1334 (Print)0940-1334 (Linking)

Engel, Tatiana (2007) Firing statistics in neurons as non-Markovian first passage time problem. PhD thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I.

Faehnle, Christopher R., Joshua-Tor, Leemor (October 2007) Argonautes confront new small RNAs. Current Opinion in Chemical Biology, 11 (5). pp. 569-577. ISSN 1367-5931 (Print)

Faga, B. P. (March 2007) Installing and configuring CMap. Curr Protoc Bioinformatics, Chap 9 (Unit 9). ISSN 1934-340X (Electronic)

Faith, J. J., Olson, A. J., Gardner, T. S., Sachidanandam, R. (September 2007) Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context. BMC Bioinformatics, 8. p. 344. ISSN 1471-2105

Fang, Y., Spector, D. L. (May 2007) Identification of Nuclear Dicing Bodies Containing Proteins for MicroRNA Biogenesis in Living Arabidopsis Plants. Current Biology, 17 (9). pp. 818-823. ISSN 0960-9822 (Print)

Farrar, J., Nater, M., Caywood, E., McDevitt, M., Kowalski, J., Takemoto, C., Talbot, C., Meltzer, P., Esposito, D., Beggs, A., Schneider, H., Grabowska, A., Ball, S., Niewiadomska, E., Sieff, C., Vlachos, A., Atsidaftos, E., Ellis, S., Lipton, J., Gazda, H., Arceci, R. J. (November 2007) A large ribosomal subunit protein abnormality in diamond-blackfan anemia (DBA). Blood, 110 (11). 131A-131A. ISSN 0006-4971

Feierstein, C. E. (February 2007) Representation of goals, actions and outcomes in rat orbitofrontal cortex. PhD thesis, Cold Spring Harbor Laboratory.

Feng, Z. H., Hu, W. W., De Stanchina, E., Teresky, A. K., Jin, S. K., Lowe, S. W., Levine, A. J. (April 2007) The regulation of AMPK beta 1, TSC2, and PTEN expression by p53: Stress, cell and tissue specificity, and the role of these gene products in modulating the IGF-1-AKT-mTOR pathways. Cancer Research, 67 (7). pp. 3043-3053. ISSN 0008-5472

Fernald, G. H., Knott, S., Pachner, A., Caillier, S. J., Narayan, K., Oksenberg, J. R., Mousavi, P., Baranzini, S. E. (April 2007) Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans. J Immunol, 178 (8). pp. 5076-85. ISSN 0022-1767 (Print)0022-1767

Fesen, R. A., Hoflich, P. A., Hamilton, A. J. S., Hammell, M. C., Gerardy, C. L., Khokhlov, A. M., Wheeler, J. C. (March 2007) The chemical distribution in a subluminous type Ia supernova: Hubble Space Telescope images of the SN 1885 remnant. Astrophysical Journal, 658 (1). pp. 396-409. ISSN 0004-637X

Flinterman, M. B., Mymryk, J. S., Klanrit, P., Yousef, A. F., Lowe, S. W., Caldas, C., Gaken, J., Farzaneh, F., Tavassoli, M. (November 2007) p400 function is required for the adenovirus E1A-mediated suppression of EGFR and tumour cell killing. Oncogene, 26 (48). pp. 6863-6874. ISSN 0950-9232

Frazer, K. A., Ballinger, D. G., Cox, D. R., Hinds, D. A., Stuve, L. L., Gibbs, R. A., Belmont, J. W., Boudreau, A., Hardenbol, P., Leal, S. M., Pasternak, S., Wheeler, D. A., Willis, T. D., Yu, F. L., Yang, H. M., Zeng, C. Q., Gao, Y., Hu, H. R., Hu, W. T., Li, C. H., Lin, W., Liu, S. Q., Pan, H., Tang, X. L., Wang, J., Wang, W., Yu, J., Zhang, B., Zhang, Q. R., Zhao, H. B., Zhao, H., Zhou, J., Gabriel, S. B., Barry, R., Blumenstiel, B., Camargo, A., Defelice, M., Faggart, M., Goyette, M., Gupta, S., Moore, J., Nguyen, H., Onofrio, R. C., Parkin, M., Roy, J., Stahl, E., Winchester, E., Ziaugra, L., Altshuler, D., Shen, Y., Yao, Z. J., Huang, W., Chu, X., He, Y. G., Jin, L., Liu, Y. F., Shen, Y. Y., Sun, W. W., Wang, H. F., Wang, Y., Wang, Y., Xiong, X. Y., Xu, L., Waye, M. M. Y., Tsui, S. K. W., Wong, J. T. F., Galver, L. M., Fan, J. B., Gunderson, K., Murray, S. S., Oliphant, A. R., Chee, M. S., Montpetit, A., Chagnon, F., Ferretti, V., Leboeuf, M., Olivier, J. F., Phillips, M. S., Roumy, S., Sallee, C., Verner, A., Hudson, T. J., Kwok, P. Y., Cai, D. M., Koboldt, D. C., Miller, R. D., Pawlikowska, L., Taillon-Miller, P., Xiao, M., Tsui, L. C., Mak, W., Song, Y. Q., Tam, P. K. H., Nakamura, Y., Kawaguchi, T., Kitamoto, T., Morizono, T., Nagashima, A., Ohnishi, Y., Sekine, A. (October 2007) A second generation human haplotype map of over 3.1 million SNPs. Nature, 449 (7164). 851-U3. ISSN 0028-0836

Ghedin, E., Wang, S., Spiro, D., Caler, E., Zhao, Q., Crabtree, J., Allen, J. E., Delcher, A. L., Guiliano, D. B., Miranda-Saavedra, D., Angiuoli, S. V., Creasy, T., Amedeo, P., Haas, B., El-Sayed, N. M., Wortman, J. R., Feldblyum, T., Tallon, L., Schatz, M., Shumway, M., Koo, H., Salzberg, S. L., Schobel, S., Pertea, M., Pop, M., White, O., Barton, G. J., Carlow, C. K. S., Crawford, M. J., Daub, J., Dimmic, M. W., Estes, C. F., Foster, J. M., Ganatra, M., Gregory, W. F., Johnson, N. M., Jin, M., Komuniecki, R., Korf, I., Kumar, S., Laney, S., Li, B. W., Li, W., Lindblom, T. H., Lustigman, S., Ma, D., Maina, C. V., Martin, D. M. A., McCarter, J. P., McReynolds, L., Mitreva, M., Nutman, T. B., Parkinson, J., Peregrín-Alvarez, J. M., Poole, C., Ren, Q., Saunders, L., Sluder, A. E., Smith, K., Stanke, M., Unnasch, T. R., Ware, J., Wei, A. D., Weil, G., Williams, D. J., Zhang, Y., Williams, S. A., Fraser-Liggett, C., Slatko, B., Blaxter, M. L., Scott, A. L. (2007) Draft genome of the filarial nematode parasite Brugia malayi. Science, 317 (5845). pp. 1756-1760. ISSN 00368075 (ISSN)

Ghosh, S., Hirsch, H. A., Sekinger, E. A., Kapranov, P., Struhl, K., Gingeras, T. R. (2007) Differential analysis for high density tiling microarray data. BMC Bioinformatics, 8. ISSN 14712105 (ISSN)

Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., Batzer, M. A., Bustamante, C. D., Eichler, E. E., Hahn, M. W., Hardison, R. C., Makova, K. D., Miller, W., Milosavljevic, A., Palermo, R. E., Siepel, A., Sikela, J. M., Attaway, T., Bell, S., Bernard, K. E., Buhay, C. J., Chandrabose, M. N., Dao, M., Davis, C., Delehaunty, K. D., Ding, Y., Dinh, H. H., Dugan-Rocha, S., Fulton, L. A., Gabisi, R. A., Garner, T. T., Godfrey, J., Hawes, A. C., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Kirkness, E. F., Cree, A., Fowler, R. G., Lee, S., Lewis, L. R., Li, Z., Liu, Y. S., Moore, S. M., Muzny, D., Nazareth, L. V., Ngo, D. N., Okwuonu, G. O., Pai, G., Parker, D., Paul, H. A., Pfannkoch, C., Pohl, C. S., Rogers, Y. H., Ruiz, S. J., Sabo, A., Santibanez, J., Schneider, B. W., Smith, S. M., Sodergren, E., Svatek, A. F., Utterback, T. R., Vattathil, S., Warren, W., White, C. S., Chinwalla, A. T., Feng, Y., Halpern, A. L., Hillier, L. W., Huang, X., Minx, P., Nelson, J. O., Pepin, K. H., Qin, X., Sutton, G. G., Venter, E., Walenz, B. P., Wallis, J. W., Worley, K. C., Yang, S. P., Jones, S. M., Marra, M. A., Rocchi, M., Schein, J. E., Baertsch, R., Clarke, L., Csuros, M., Glasscock, J., Harris, R. A., Havlak, P., Jackson, A. R., Jiang, H. (April 2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science, 316 (5822). pp. 222-34. ISSN 0036-8075

Gingeras, T. R. (2007) Origin of phenotypes: Genes and transcripts. Genome Research, 17 (6). pp. 682-690. ISSN 10889051 (ISSN)

Girard, A., Hannon, G. J. (March 2007) [The role of piRNAs in mouse spermatogenesis.]. J Soc Biol, 201 (4). pp. 411-8.

Girard, L. R., Fiedler, T. J., Harris, T. W., Carvalho, F., Antoshechkin, I., Han, M., Sternberg, P.l W., Stein, L. D., Chalfie, M. (January 2007) WormBook: the online review of Caenorhabditis elegans biology. Nucleic Acids Res, 35 (Databa). D472-D475. ISSN 0305-1048

Girirajan, S., Mendoza-Londono, R., Vlangos, C. N., Dupuis, L., Nowak, N. J., Bunyan, D. J., Hatchwell, E., Elsea, S. H. (May 2007) Smith-Magenis syndrome and Moyamoya disease in a patient with del(17)(p11.2p13.1). American Journal of Medical Genetics Part A, 143A (9). pp. 999-1008. ISSN 1552-4825

Gold, J. S., van der Zwan, S. M., Gonen, M., Maki, R. G., Singer, S., Brennan, M. F., Antonescu, C. R., De Matteo, R. P. (January 2007) Outcome of metastatic GIST in the era before tyrosine kinase inhibitors. Ann Surg Oncol, 14 (1). pp. 134-42. ISSN 1068-9265 (Print)1068-9265 (Linking)

Gregory, G. D., Vakoc, C. R., Rozovskaia, T., Zheng, X., Patel, S., Nakamura, T., Canaani, E., Blobel, G. A. (2007) Mammalian ASH1L is a histone methyltransferase that occupies the transcribed region of active genes. Molecular and Cellular Biology, 27 (24). pp. 8466-8479. ISSN 02707306 (ISSN)

Gross-Hardt, R., Kagi, C., Baumann, N., Moore, J. M., Baskar, R., Gagliano, W. B., Jurgens, G., Grossniklaus, U. (March 2007) LACHESIS restricts gametic cell fate in the female gametophyte of Arabidopsis. PLoS Biology, 5 (3). pp. 494-500. ISSN 1544-9173

Guo, T., Agaram, N. P., Wong, G. C., Hom, G., D'Adamo, D., Maki, R. G., Schwartz, G. K., Veach, D., Clarkson, B. D., Singer, S., DeMatteo, R. P., Besmer, P., Antonescu, C. R. (August 2007) Sorafenib inhibits the imatinib-resistant KITT670I gatekeeper mutation in gastrointestinal stromal tumor. Clin Cancer Res, 13 (16). pp. 4874-81. ISSN 1078-0432 (Print)1078-0432 (Linking)

Guo, X. C., Mills, A. A. (February 2007) p63, cellular senescence and tumor development. Cell Cycle, 6 (3). pp. 305-11. ISSN 1538-4101

Gupta, G. P., Perk, J., Acharyya, S., de Candia, P., Mittal, V., Todorova-Manova, K., Gerald, W. L., Brogi, E., Benezra, R., Massague, J. (December 2007) ID genes mediate tumor reinitiation during breast cancer lung metastasis. Proc Natl Acad Sci U S A, 104 (49). pp. 19506-11. ISSN 1091-6490 (Electronic)

Ha, L., Ichikawa, T., Anver, M., Dickins, R. A., Lowe, S. W., Sharpless, N E., Krimpenfort, P , DePinho, R. A., Bennett, D. C., Sviderskaya, E. V., Merlino, G. (June 2007) ARF functions as a melanoma tumor suppressor by inducing p53-independent senescence. Proc Natl Acad Sci U S A, 104 (26). 10968-10973 . ISSN 0027-8424 (Print)

Haakensen, V. D., Helland, A., Holmen, M. M., Hicks, J. B., Børresen-Dale, A. L. (September 2007) No genomic changes in mammographically dense breast. European Journal of Cancer Supplements, 5 (4). p. 99. ISSN 1359-6349

Haesler, S., Rochefort, C., Georgi, B., Licznerski, P., Osten, P., Scharff, C. (December 2007) Incomplete and inaccurate vocal imitation after knockdown of FoxP2 in songbird basal ganglia nucleus Area X. PLoS Biology, 5 (12). e321. ISSN 1544-9173

Harvey, C. D., Svoboda, K. (December 2007) Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature, 450 (7173). pp. 1195-1200. ISSN 0028-0836

Hastings, M. L., Allemand, E., Duelli, D. M., Myers, M. P., Krainer, A. R. (June 2007) Control of Pre-mRNA Splicing by the General Splicing Factors PUF60 and U2AF65. PLoS ONE, 2 (6). e538. ISSN 1932-6203 (Electronic)

Hatchwell, E., Tegay, D. H., Wang, C., O'Brien, J. E., Allen, W., Tan, T., Prucka, S., Pettenati, M. J., Montagna, C., Nowak, N. J., Toriello, H. V. (2007) Genetic dissection using a novel whole genome tiling path BAC array reveals dramatic heterogeneity in Toriello-Carey syndrome, including a novel microdeletion syndrome at 22q12. Cellular Oncology, 29 (2). p. 143. ISSN 1570-5870

He, L., He, X., Lim, L. P., De Stanchina, E., Xuan, Z., Liang, Y., Xue, W., Zender, L., Magnus, J., Ridzon, D., Jackson, A. L., Linsley, P. S., Chen, C., Lowe, S. W., Cleary, M. A., Hannon, G. J. (June 2007) A microRNA component of the p53 tumour suppressor network. Nature, 447 (7148). pp. 1130-4. ISSN 1476-4687 (Electronic)

He, L., He, X., Lowe, S. W., Hannon, G. J. (November 2007) microRNAs join the p53 network - another piece in the tumour-suppression puzzle. Nat Rev Cancer, 7 (11). pp. 819-822. ISSN 1474-1768 (Electronic)

He, X., He, L., Hannon, G. J. (2007) The guardian's little helper: MicroRNAs in the p53 tumor suppressor network. Cancer Research, 67 (23). pp. 11099-11101. ISSN 00085472 (ISSN)

Hernando, E., Charytonowicz, E., Dudas, M. E., Menendez, S., Matushansky, I., Mills, J., Socci, N. D., Behrendt, N., Ma, L., Maki, R. G., Pandolfi, P. P., Cordon-Cardo, C. (June 2007) The AKT-mTOR pathway plays a critical role in the development of leiomyosarcomas. Nat Med, 13 (6). pp. 748-53. ISSN 1078-8956 (Print)1078-8956 (Linking)

Hladish, T., Gopalan, V., Liang, C., Qiu, W., Yang, P., Stoltzfus, A. (June 2007) Bio :: NEXUS: a Perl API for the NEXUS format for comparative biological data. Bmc Bioinformatics, 8. p. 191. ISSN 1471-2105

Ho, I. S., Hannan, F., Guo, H.-F., Hakker, I., Zhong, Y. (June 2007) Distinct functional domains of neurofibromatosis type 1 regulate immediate versus long-term memory formation. J Neurosci, 27 (25). pp. 6852-7. ISSN 1529-2401 (Electronic)

Hodges, E., Xuan, Z. Y., Balija, V., Kramer, M. R., Molla, M. N., Smith, S. W., Middle, C. M., Rodesch, M. J., Albert, T. J., Hannon, G. J., McCombie, W. R. (November 2007) Genome-wide in situ exon capture for selective resequencing. Nature Genetics, 39 (12). pp. 1522-7. ISSN 1061-4036

Houwing, S., Kamminga, L. M., Berezikov, E., Cronembold, D., Girard, A., van den Elst, H., Filippov, D. V., Blaser, H., Raz, E., Moens, C. B., Plasterk, R. H. A., Hannon, G. J., Draper, B. W., Ketting, R. F. (April 2007) A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in zebrafish. Cell, 129 (1). pp. 69-82. ISSN 0092-8674

Hrecka, K., Gierszewska, M., Srivastava, S., Kozaczkiewicz, L., Swanson, S. K., Florens, L., Washburn, M. P., Skowronski, J. (July 2007) Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle. Proc Natl Acad Sci U S A, 104 (28). pp. 11778-83. ISSN 0027-8424 (Print)

Hromádka, T., Zador, A. M. (July 2007) Toward the mechanisms of auditory attention. Hear Res, 229 (1-2). pp. 180-5. ISSN 0378-5955 (Print)

Hu, H., Real, E., Takamiya, K., Kang, M. G., Ledoux, J., Huganir, R. L., Malinow, R. (October 2007) Emotion Enhances Learning via Norepinephrine Regulation of AMPA-Receptor Trafficking. Cell, 131 (1). pp. 160-73. ISSN 0092-8674 (Print)

Hua, Y. M., Vickers, T. A., Baker, B. F., Bennett, C. F., Krainer, A. R. (April 2007) Enhancement of SMN2 Exon 7 inclusion by antisense oligonucleotides targeting the exon. PLoS Biology, 5 (4). e73. ISSN 1544-9173

Huang, Z. J., Di Cristo, G., Ango, F. (September 2007) Development of GABA innervation in the cerebral and cerebellar cortices. Nat Rev Neurosci, 8 (9). pp. 673-686. ISSN 1471-0048

Huarte, M., Lan, F., Kim, T. H., Vaughn, M. W., Zaratiegui, B. M., Martienssen, R. A., Buratowski, S., Shi, Y. (July 2007) The fission yeast Jmj2 reverses histone H3 lysine 4 trimethylation. Journal of Biological Chemistry, 282 (30). pp. 21662-21670. ISSN 0021-9258

Hufford, K. M., Canaran, P., Ware, D. H., McMullen, M. D., Gaut, B. S. (July 2007) Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiology, 144 (3). pp. 1642-1653. ISSN 0032-0889

Ibarra, I., Erlich, Y., Muthuswamy, S. K., Sachidanandam, R., Hannon, Gregory J. (December 2007) A role for microRNAs in maintenance of mouse mammary epithelial progenitor cells. Genes Dev, 21 (24). pp. 3238-43. ISSN 0890-9369 (Print)

Ilic, K., Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., Rhee, S. Y. (February 2007) The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology, 143 (2). pp. 587-599. ISSN 0032-0889

Inglis, J. R. (March 2007) Twenty years on. Genes Dev, 21 (5). xi. ISSN 0890-9369 (Print)

Itoh, T., Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., De Oliveira, A. C., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y. I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J. P., Kikuchi, S., Komatsu, S., Koyanagi, K. O., Kubooka, H., Lieberherr, D., Lin, Y. C., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W. R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., Oota, S., Osato, N., Palmer, L. E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N. K., Smith-White, B., Takeda, J. I., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A. K., Vanavichit, A., Wang, A., Wing, R. A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T., Sasaki, T. (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project. Genome Research, 17 (2). pp. 175-183. ISSN 10889051 (ISSN)

Ivanov, S. V., Ivanova, A. V., Lucito, R., Pass, H. I. (August 2007) High-resolution ROMA analysis of chromosomal rearrangements in mesothelioma patients with poor and good survival. Journal of Thoracic Oncology, 2 (8). S431-S431. ISSN 1556-0864

Jackson, D. P. (January 2007) Imaging of Fresh Arabidopsis Tissues in the Scanning Electron Microscope. Cold Spring Harbor Protocols, 2007 (1).

Jackson, David (2007) Transcription Factor Movement Through Plasmadesmata. In: Plasmodesmata. Blackwell Publishing Ltd, pp. 113-134. ISBN 9780470988572

Jaggi, J. S., Henke, E., Seshan, S. V., Kappel, B. J., Chattopadhyay, D., May, C., McDevitt, M. R., Nolan, D. J., Mittal, V., Benezra, R., Scheinberg, D. A. (March 2007) Selective alpha-particle mediated depletion of tumor vasculature with vascular normalization. PLoS ONE, 2 (3). e267. ISSN 19326203 (ISSN)

Jasti, J., Furukawa, H., Gonzales, E. B., Gouaux, E. (September 2007) Structure of acid-sensing ion channel 1 at 1.9 A resolution and low pH. Nature, 449 (7160). pp. 316-23. ISSN 1476-4687 (Electronic) 1476-4687 (Linking) (Public Dataset)

Jenik, P. D., Gillmor, C. S., Lukowitz, W. (November 2007) Embryonic patterning in Arabidopsis thaliana. Annu Rev Cell Dev Biol, 23. pp. 207-236. ISSN 1081-0706 (Print)

Jiang, B., Zhang, M. Q., Zhang, X. (November 2007) OSCAR: one-class SVM for accurate recognition of cis-elements. Bioinformatics, 23 (21). pp. 2823-8. ISSN 1460-2059 (Electronic)

Jiang, C., Xuan, Z. Y., Zhao, F., Zhang, M. Q. (January 2007) TRED: a transcriptional regulatory element database, new entries and other development. Nucleic Acids Res, 35 (Databa). D137-D140. ISSN 0305-1048

Jing, H., Vakoc, C. R., Wang, H., Mandat, S., Miller, J., Gregory, P. D., Reik, A., Blobel, G. A. (March 2007) Regulation of higher order chromatin organization by GATA-1. Blood Cells Molecules and Diseases, 38 (2). p. 126. ISSN 1079-9796

Joiner, M. A., Asztalos, Z., Jones, C. J., Tully, T., Wu, C. F. (January 2007) Effects of mutant Drosophila k(+) channel subunits on habituation of the olfactory jump response. J Neurogenet, 21 (1). pp. 45-58. ISSN 0167-7063 (Print)

Kang, H., Tian, L., Son, Y. J., Zuo, Y., Procaccino, D., Love, F., Hayworth, C., Trachtenberg, J., Mikesh, M., Sutton, L., Ponomareva, O., Mignone, J., Enikolopov, G., Rimer, M., Thompson, W. (May 2007) Regulation of the intermediate filament protein nestin at rodent neuromuscular junctions by innervation and activity. Journal of Neuroscience, 27 (22). pp. 5948-5957. ISSN 0270-6474

Kannan, N., Haste, N., Taylor, S. S., Neuwald, A. F. (January 2007) The hallmark of AGC kinase functional divergence is its C-terminal tail, a cis-acting regulatory module. Proc Natl Acad Sci U S A, 104 (4). pp. 1272-7.

Kapranov, P., Cheng, J., Dike, S., Nix, D. A., Duttagupta, R., Willingham, A. T., Stadler, P. F., Hertel, J., Hackermüller, J., Hofacker, I. L., Bell, I., Cheung, E., Drenkow, J., Dumais, E., Patel, S., Helt, G., Ganesh, M., Ghosh, S., Piccolboni, A., Sementchenko, V., Tammana, H., Gingeras, T. R. (2007) RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science, 316 (5830). pp. 1484-1488. ISSN 00368075 (ISSN)

Kapranov, P., Willingham, A. T., Gingeras, T. R. (2007) Genome-wide transcription and the implications for genomic organization. Nature Reviews Genetics, 8 (6). pp. 413-423. ISSN 14710056 (ISSN)

Karginov, F. V., Conaco, C., Xuan, Z. Y., Schmidt, B. H., Parker, J. S., Mandel, G., Hannon, G. J. (December 2007) A biochemical approach to identifying microRNA targets. Proceedings of the National Academy of Sciences of the United States of America, 104 (49). pp. 19291-6. ISSN 0027-8424

Karni, R., de Stanchina, E., Lowe, S. W., Sinha, R., Mu, D., Krainer, A. R. (March 2007) The gene encoding the splicing factor SF2/ASF is a proto-oncogene. Nat Struct Mol Biol, 14 (3). pp. 185-93. ISSN 1545-9993 (Print)

Kendall, J. T., Liu, Q. A., Bakleh, A., Krasnitz, A., Nguyen, K. C. Q., Lakshmi, B., Gerald, W., Powers, S., Mu, D. (October 2007) Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer. Proc Natl Acad Sci U S A, 104 (42). pp. 16663-16668. ISSN 0027-8424 (Print)

Kepecs, A., Raghavachari, S. (April 2007) Gating information by two-state membrane potential fluctuations. J Neurophysiol, 97 (4). pp. 3015-23. ISSN 0022-3077 (Print)

Kepecs, A., Uchida, N., Mainen, Z. F. (July 2007) Rapid and Precise Control of Sniffing during Olfactory Discrimination in Rats. J Neurophysiol, 98 (1). pp. 205-213. ISSN 0022-3077 (Print)

Keuling, A., Yang, F., Hanna, S., Wang, H., Tully, T., Burnham, A., Locke, J., McDermid, H. E. (August 2007) Mutation analysis of Drosophila dikar/CG32394, homologue of the chromatin-remodelling gene CECR2. Genome, 50 (8). pp. 767-777. ISSN 0831-2796

Khalil, D. N., Tansey, W. P. (March 2007) A novel role for Myc in prostate cancer. Journal of Investigative Medicine, 55 (2). S356-S356. ISSN 1081-5589

Khoo, B., Roca, X., Chew, S. L., Krainer, A. R. (January 2007) Antisense oligonucleotide-induced alternative splicing of the APOB mRNA generates a novel isoform of APOB. BMC Molecular Biology, 8. ISSN 1471-2199

Kidner, C. A., Timmermans, M. C. (February 2007) Mixing and matching pathways in leaf polarity. Current Opinion in Plant Biology, 10 (1). pp. 13-20. ISSN 1369-5266 (Print)1369-5266

Kim, J., Inoue, K., Ishii, J., Vanti, W. B., Voronov, S. V., Murchison, E., Hannon, G. J., Abeliovich, A. (August 2007) A MicroRNA feedback circuit in midbrain dopamine neurons. Science, 317 (5842). pp. 1220-4. ISSN 1095-9203 (Electronic) 1095-9203 (Linking)

Kim, T. H., Abdullaev, Z. K., Smith, A. D., Ching, K. A., Loukinov, D. I., Green, R. D., Zhang, M. Q., Lobanenkov, V. V., Ren, B. (March 2007) Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell, 128 (6). pp. 1231-1245. ISSN 0092-8674

Kininis, M., Chen, B. S., Diehl, A. G., Isaacs, G. D., Zhang, T., Siepel, A. C., Clark, A. G., Kraus, W. L. (July 2007) Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters. Mol Cell Biol, 27 (14). pp. 5090-104. ISSN 0270-7306 (Print)0270-7306

Kinney, J. B., Tkacik, G., Callan, C. G. (January 2007) Precise physical models of protein-DNA interaction from high-throughput data. Proc Natl Acad Sci U S A, 104 (2). pp. 501-6. ISSN 0027-8424 (Print)0027-8424 (Linking)

Kinney, Justin, Maldacena, Juan, Minwalla, Shiraz, Raju, Suvrat (October 2007) An index for 4 dimensional super conformal theories. Communications in Mathematical Physics, 275 (1). pp. 209-254. ISSN 0010-3616

Komarova, A. V., Rea, E., Borman, A. M., Brocard, M., England, P., Tordo, N., Hershey, J. W. B., Kean, K. M., Jacob, Y. (March 2007) Rabies virus matrix protein interplay with elF3, new insights into rabies virus pathogenesis. Nucleic Acids Research, 35 (5). pp. 1522-1532. ISSN 03051048 (ISSN)

Kopec, C. D., Kessels, H. W., Bush, D. E., Cain, C. K., LeDoux, J. E., Malinow, R. (January 2007) A robust automated method to analyze rodent motion during fear conditioning. Neuropharmacology, 52 (1). pp. 228-33. ISSN 0028-3908 (Print)

Kopec, C. D., Real, E., Kessels, H. W., Malinow, R. (December 2007) GluR1 links structural and functional plasticity at excitatory synapses. J Neurosci, 27 (50). pp. 13706-18. ISSN 1529-2401 (Electronic)

Koulakov, A. A., Gelperin, A., Rinberg, D. (December 2007) Olfactory coding with all-or-nothing glomeruli. J Neurophysiol, 98 (6). pp. 3134-42. ISSN 0022-3077 (Print)

Kuhlman, S. J. (2007) Biological Rhythms Workshop IB: Neurophysiology of SCN Pacemaker Function. Cold Spring Harbor Symposia on Quantitative Biology, 72. pp. 21-33. ISSN 00917451 (ISSN)

Kuhlman, S. J., Mackey, S. R., Duffy, J. F. (2007) Biological Rhythms Workshop I: Introduction to Chronobiology. Cold Spring Harbor Symposia on Quantitative Biology, 72. pp. 1-6. ISSN 00917451 (ISSN)

Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., Sugnet, C. W., Stanke, M., Smith, K. E., Siepel, A., Rosenbloom, K. R., Rhead, B., Raney, B. J., Pohl, A., Pedersen, J. S., Hsu, F., Hinrichs, A. S., Harte, R. A., Diekhans, M., Clawson, H., Bejerano, G., Barber, G. P., Baertsch, R., Haussler, D., Kent, W. J. (January 2007) The UCSC genome browser database: update 2007. Nucleic Acids Res, 35 (Databa). D668-73. ISSN 0305-1048

Lan, Fei, Zaratiegui, Mikel, Villen, Judit, Vaughn, Matthew W., Verdel, Andre, Huarte, Maite, Shi, Yujiang, Gygi, Steven P., Moazed, Danesh, Martienssen, Robert A., Shi, Yang (2007) S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription. Mol Cell, 26 (1). pp. 89-8101. ISSN 1097-2765

Landgraf, P., Rusu, M., Sheridan, R., Sewer, A., Iovino, N., Aravin, A. A., Pfeffer, S., Rice, A., Kamphorst, A. O., Landthaler, M., Lin, C., Socci, N. D., Hermida, L., Fulci, V., Chiaretti, S., Foa, R., Schliwka, J., Fuchs, U., Novosel, A., Muller, R. U., Schermer, B., Bissels, U., Inman, J., Phan, Q., Chien, M. C., Weir, D. B., Choksi, R., De Vita, G., Frezzetti, D., Trompeter, H. I., Hornung, V., Teng, G., Hartmann, G., Palkovits, M., Di Lauro, R., Wernet, P., Macino, G., Rogler, C. E., Nagle, J. W., Ju, J. Y., Papavasiliou, F. N., Benzing, T., Lichter, P., Tam, W., Brownstein, M. J., Bosio, A., Borkhardt, A., Russo, J. J., Sander, C., Zavolan, M., Tuschl, T. (June 2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell, 129 (7). pp. 1401-1414. ISSN 0092-8674

Leduc, P. R., Wong, M. S., Ferreira, P. M., Groff, R. E., Haslinger, K., Koonce, M. P., Lee, W. Y., Love, J. C., McCammon, J. A., Monteiro-Riviere, N. A., Rotello, V. M., Rubloff, G. W., Westervelt, R., Yoda, M. (January 2007) Towards an in vivo biologically inspired nanofactory. Nature Nanotechnology, 2 (1). pp. 3-7. ISSN 1748-3387

Lee, S., Horn, V., Julien, E., Liu, Y., Wysocka, J., Bowerman, B., Hengartner, M. O., Herr, W. (November 2007) Epigenetic Regulation of Histone H3 Serine 10 Phosphorylation Status by HCF-1 Proteins in C. elegans and Mammalian Cells. PLoS ONE, 2 (11). e1213. ISSN 1932-6203 (Electronic)

Li, B., Woo, R. S., Mei, L., Malinow, R. (May 2007) The Neuregulin-1 Receptor ErbB4 Controls Glutamatergic Synapse Maturation and Plasticity. Neuron, 54 (4). pp. 583-97. ISSN 0896-6273

Lin, H. H., Lai, J. S. Y., Chin, A. L., Chen, Y. C., Chiang, A. S. (March 2007) A map of olfactory representation in the Drosophila mushroom body. Cell, 128 (6). pp. 1205-1217. ISSN 0092-8674

Lin, H. H., Lin, C. Y., Chiang, A. S. (July 2007) Internal representations of smell in the Drosophila brain. Journal of Biomedical Science, 14 (4). pp. 453-459. ISSN 1021-7770

Lindemann, R. K., Newbold, A., Whitecross, K. F., Cluse, L. A., Frew, A. J., Ellis, L., Williams, S., Wiegmans, A. P., Dear, A. E., Scott, C. L., Pellegrini, M., Wei, A., Richon, V. M., Marks, P. A., Lowe, S. W., Smyth, M. J., Johnstone, R. W. (May 2007) Analysis of the apoptotic and therapeutic activities of histone deacetylase inhibitors by using a mouse model of B cell lymphoma. Proc Natl Acad Sci U S A, 104 (19). pp. 8071-6. ISSN 0027-8424

Liu, X., Schuck, S., Stenlund, A. (March 2007) Adjacent residues in the E1 initiator beta-hairpin define different roles of the beta-hairpin in Ori melting, helicase loading, and helicase activity. Mol Cell, 25 (6). pp. 825-37. ISSN 1097-2765 (Print)

Lu, P., Liu, F., Yan, L., Peng, T., Liu, T., Yao, Z., Wang, C. Y. (October 2007) Stem cells therapy for type 1 diabetes. Diabetes Research and Clinical Practice, 78 (1). pp. 1-7. ISSN 0168-8227

Lu, Y., Lv, Y., Ye, Y., Wang, Y., Hong, Y., Fortini, M. E., Zhong, Y., Xie, Z. (August 2007) A role for presenilin in post-stress regulation: effects of presenilin mutations on Ca2+ currents in Drosophila. Faseb Journal, 21 (10). pp. 2368-2378. ISSN 1530-6860 (Electronic)

Lu, Y. B., Lu, Y. S., Shuai, Y. C., Feng, C. H., Tully, T., Xie, Z. P., Zhong, Y., Zhou, H. M. (August 2007) The AKAP Yu is required for olfactory long-term memory formation in Drosophila. Proc Natl Acad Sci U S A, 104 (34). pp. 13792-13797. ISSN 0027-8424

Lucito, R., Suresh, S., Walter, K., Pandey, A., Lakshmi, B., Krasnitz, A., Sebat, J., Wigler, M. H., Klein, A. P., Brune, K., Palmisano, E., Maitra, A., Goggins, M., Hruban, R. H. (October 2007) Copy-Number Variants in Patients with a Strong Family History of Pancreatic Cancer. Cancer Biol Ther, 6 (10). pp. 1592-9. ISSN 1538-4047 (Print)

Lyon, G. J., Koplewicz, H. S. (December 2007) Schizophrenia in childhood. The Scientist, 21 (12 SUP). pp. 22-25. ISSN 08903670 (ISSN)

MacDiarmid, J. A., Mugridge, N. B., Weiss, J. C., Phillips, L., Burn, A. L., Paulin, R. P., Haasdyk, J. E., Dickson, K. A., Brahmbhatt, V. N., Pattison, S. T., James, A. C., Al Bakri, G., Straw, R. C., Stillman, B., Graham, R. M., Brahmbhatt, H. (May 2007) Bacterially derived 400 nm particles for encapsulation and cancer cell targeting of chemotherapeutics. Cancer Cell, 11 (5). pp. 431-445. ISSN 1535-6108

MacPherson, D., Conkrite, K., Tam, M., Mukai, S., Mu, D., Jacks, T. (February 2007) Murine bilateral retinoblastoma exhibiting rapid-onset, metastatic progression and N-myc gene amplification. Embo Journal, 26 (3). pp. 784-794. ISSN 0261-4189

Mainen, Z. F. (December 2007) The main olfactory bulb and innate behavior: different perspectives on an olfactory scene. Nat Neurosci, 10 (12). pp. 1511-2.

Majka, J., Speck, C. (2007) Analysis of protein-DNA interactions using surface plasmon resonance. In: Analytics of Protein-DNA Interactions. Advances in Biochemical Engineering / Biotechnology, 104 . Springer-Verlag Berlin, Berlin, pp. 13-36. ISBN 0724-6145

Maki, R. G., Livingston, P. O., Lewis, J. J., Janetzki, S., Klimstra, D., Desantis, D., Srivastava, P. K., Brennan, M. F. (August 2007) A phase I pilot study of autologous heat shock protein vaccine HSPPC-96 in patients with resected pancreatic adenocarcinoma. Dig Dis Sci, 52 (8). pp. 1964-72. ISSN 0163-2116 (Print)0163-2116 (Linking)

Maki, R. G., Wathen, J. K., Patel, S. R., Priebat, D. A., Okuno, S. H., Samuels, B., Fanucchi, M., Harmon, D. C., Schuetze, S. M., Reinke, D., Thall, P. F., Benjamin, R. S., Baker, L. H., Hensley, M. L. (July 2007) Randomized phase II study of gemcitabine and docetaxel compared with gemcitabine alone in patients with metastatic soft tissue sarcomas: results of sarcoma alliance for research through collaboration study 002 [corrected]. J Clin Oncol, 25 (19). pp. 2755-63. ISSN 1527-7755 (Electronic)0732-183X (Linking)

Manganas, L. N., Zhang, X. Y., Li, Y., Hazel, R. D., Smith, S. D., Wagshul, M. E., Henn, F. A., Benveniste, H., Djuric, P. M., Enikolopov, G. N., Maletic-Savatic, M. (November 2007) Magnetic resonance spectroscopy identifies neural progenitor cells in the live human brain. Science, 318 (5852). pp. 980-985. ISSN 0036-8075

Margulies, E. H., Cooper, G. M., Asimenos, G., Thomas, D. J., Dewey, C. N., Siepel, A., Birney, E., Keefe, D., Schwartz, A. S., Hou, M., Taylor, J., Nikolaev, S., Montoya-Burgos, J. I., Loytynoja, A., Whelan, S., Pardi, F., Massingham, T., Brown, J. B., Bickel, P., Holmes, I., Mullikin, J. C., Ureta-Vidal, A., Paten, B., Stone, E. A., Rosenbloom, K. R., Kent, W. J., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Hinrichs, A., Trumbower, H., Clawson, H., Zweig, A., Kuhn, R. M., Barber, G., Harte, R., Karolchik, D., Field, M. A., Moore, R. A., Matthewson, C. A., Schein, J. E., Marra, M. A., Antonarakis, S. E., Batzoglou, S., Goldman, N., Hardison, R., Haussler, D., Miller, W., Pachter, L., Green, E. D., Sidow, A. (June 2007) Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research, 17 (6). pp. 760-74. ISSN 1088-9051

Martienssen, R., Zaratiegui, M., Irvine, D., Goto, D., Slotkin, K., Tanurdzic, M., Lippman, Z., Vaughn, M., May, B., Cande, Z., Colot, V., Doerge, R. W. (2007) Silent running: RNA interference and heterochromatic modification. Chromosome Research, 15 (2 (Sup). pp. 20-21. ISSN 0967-3849

Martinez, M. J., Smith, A. D., Li, B. L., Zhang, M. Q., Harrod, K. S. (January 2007) Computational prediction of novel components of lung transcriptional networks. Bioinformatics, 23 (1). pp. 21-29. ISSN 1367-4803

Matsuno, M., Tully, T., Saitoe, M. (2007) The Drosophila cell-adhesion molecule Klingon is required for long-term memory and is regulated by Notch signaling. Neuroscience Research, 58. S110-S110. ISSN 0168-0102

Matushansky, I., Hernando, E., Socci, N. D., Mills, J. E., Matos, T. A., Edgar, M. A., Singer, S., Maki, R. G., Cordon-Cardo, C. (November 2007) Derivation of sarcomas from mesenchymal stem cells via inactivation of the Wnt pathway. J Clin Invest, 117 (11). pp. 3248-57. ISSN 0021-9738 (Print)0021-9738 (Linking)

Maximov, A., Pang, Z. P. P., Tervo, D. G. R., Sudhof, T. C. (March 2007) Monitoring synaptic transmission in primary neuronal cultures using local extracellular stimulation. Journal of Neuroscience Methods, 161 (1). pp. 75-87. ISSN 0165-0270

McDermott, U., Sharma, S. V., Dowell, L., Greninger, P., Montagut, C., Lamb, J., Archibald, H., Raudales, R., Tam, A., Lee, D., Rothenberg, S. M., Supko, J. G., Sordella, R., Ulkus, L. E., Iafrate, A. J., Maheswaran, S., Njauw, C. N., Tsao, H., Drew, L., Hanke, J. H., Ma, X. J., Erlander, M. G., Gray, N. S., Haber, D. A., Settleman, J. (December 2007) Identification of genotype-correlated sensitivity to selective kinase inhibitors by using high-throughput tumor cell line profiling. Proceedings of the National Academy of Sciences of the United States of America, 104 (50). pp. 19936-41. ISSN 0027-8424

Micklos, D. (August 2007) Coming into the gene age: The challenge to biology educators. Chromosome Research, 15 (S2). p. 70. ISSN 0967-3849

Mignone, J. L., Roig-Lopez, J. L., Fedtsova, N., Schones, D. E., Manganas, L. N., Maletic-Savatic, M., Keyes, W. M., Mills, A. A., Gleiberman, A., Zhang, M. Q., Enikolopov, G. N. (September 2007) Neural Potential of a Stem Cell Population in the Hair Follicle. Cell Cycle, 6 (17). 2161 - 2170 . ISSN 1551-4005 (Electronic)

Miller, W., Rosenbloom, K., Hardison, R. C., Hou, M., Taylor, J., Raney, B., Burhans, R., King, D. C., Baertsch, R., Blankenberg, D., Kosakovsky Pond, S. L., Nekrutenko, A., Giardine, B., Harris, R. S., Tyekucheva, S., Diekhans, M., Pringle, T. H., Murphy, W. J., Lesk, A., Weinstock, G. M., Lindblad-Toh, K., Gibbs, R. A., Lander, E. S., Siepel, A., Haussler, D., Kent, W. J. (December 2007) 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Research, 17 (12). pp. 1797-808. ISSN 1088-9051

Mitra, P. P. (April 2007) NIH Conference on Knowledge Environments for Biomedical Research (December 11-12, 2006). Neuroinformatics, 5 (2). pp. 139-140. ISSN 1539-2791

Mitra, P. P., Bokil, H. S. (2007) Observed Brain Dynamics. Oxford University Press, p. 408.

Mittal, V., Nolan, D. J. (March 2007) Genomics and proteomics approaches in understanding tumor angiogenesis. Expert Rev Mol Diagn, 7 (2). pp. 133-147. ISSN 1744-8352 (Electronic)

Moses, J. E., Moorhouse, A. D. (August 2007) The growing applications of click chemistry. Chemical Society Reviews, 36 (8). pp. 1249-1262. ISSN 0306-0012

Mukarami, H., Goto, D. B., Toda, T., Chen, E. S., Grewal, S. I., Martienssen, R. A., Yanagida, M. (March 2007) Ribonuclease activity of Dis3 is required for mitotic progression and provides a possible link between heterochromatin and kinetochore function. PLoS ONE, 2 (3). e317. ISSN 19326203 (ISSN)

Mulloy, R., Ferrand, A., Kim, Y., Sordella, R., Bell, D. W., Haber, D. A., Anderson, K. S., Settleman, J. (March 2007) Epidermal growth factor receptor mutants from human lung cancers exhibit enhanced catalytic activity and increased sensitivity to gefitinib. Cancer Research, 67 (5). pp. 2325-30. ISSN 0008-5472

Murchison, E. P., Stein, P., Xuan, Z. Y., Pan, H., Zhang, M. Q., Schultz, R. M., Hannon, G. J. (March 2007) Critical roles for Dicer in the female germline. Genes Dev, 21 (6). pp. 682-93. ISSN 0890-9369 (Print)

Murray, N. E., Gann, A. (May 2007) What has phage lambda ever done for us? Current Biology, 17 (9). R305-R312. ISSN 0960-9822

Nakaya, N., Hemish, J., Krasnov, P., Kim, S. Y., Stasiv, Y., Michurina, T. V., Herman, D., Davidoff, M. S., Middendorff, R., Enikolopov, G. N. (August 2007) noxin, a novel stress-induced gene involved in cell cycle and apoptosis. Mol Cell Biol, 27 (15). pp. 5430-44. ISSN 0270-7306 (Print)

Nene, V., Wortman, J. R., Lawson, D., Haas, B., Kodira, C., Tu, Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., Ren, Q., Zdobnov, E. M., Lobo, N. F., Campbell, K. S., Brown, S. E., Bonaldo, M. F., Zhu, J., Sinkins, S. P., Hogenkamp, D. G., Amedeo, P., Arensburger, P., Atkinson, P. W., Bidwell, S., Biedler, J., Birney, E., Bruggner, R. V., Costas, J., Coy, M. R., Crabtree, J., Crawford, M., DeBruyn, B., DeCaprio, D., Eiglmeier, K., Eisenstadt, E., El-Dorry, H., Gelbart, W. M., Gomes, S. L., Hammond, M., Hannick, L. I., Hogan, J. R., Holmes, M. H., Jaffe, D., Johnston, J. S., Kennedy, R. C., Koo, H., Kravitz, S., Kriventseva, E. V., Kulp, D., LaButti, K., Lee, E., Li, S., Lovin, D. D., Mao, C., Mauceli, E., Menck, C. F. M., Miller, J. R., Montgomery, P., Mori, A., Nascimento, A. L., Naveira, H. F., Nusbaum, C., O'Leary, S., Orvis, J., Pertea, M., Quesneville, H., Reidenbach, K. R., Rogers, Y. H., Roth, C. W., Schneider, J. R., Schatz, M., Shumway, M., Stanke, M., Stinson, E. O., Tubio, J. M. C., VanZee, J. P., Verjovski-Almeida, S., Werner, D., White, O., Wyder, S., Zeng, Q., Zhao, Q., Zhao, Y., Hill, C. A., Raikhel, A. S., Soares, M. B., Knudson, D. L., Lee, N. H., Galagan, J., Salzberg, S. L., Paulsen, I. T., Dimopoulos, G., Collins, F. H., Birren, B., Fraser-Liggett, C. M., Severson, D. W. (2007) Genome sequence of Aedes aegypti, a major arbovirus vector. Science, 316 (5832). pp. 1718-1723. ISSN 00368075 (ISSN)

Ngo, Q. A., Moore, J. M., Baskar, R., Grossniklaus, U., Sundaresan, V. (November 2007) Arabidopsis GLAUCE promotes fertilization-independent endosperm development and expression of paternally inherited alleles. Development, 134 (22). pp. 4107-4117. ISSN 0950-1991

Nielsen, K. B., Sorensen, S., Cartegni, L., Corydon, T. J., Doktor, T. K., Schroeder, L. D., Reinert, L. S., Elpeleg, O., Krainer, A. R., Gregersen, N., Kjems, J., Andresen, B. S. (March 2007) Seemingly neutral polymorphic variants may confer immunity to splicing-inactivating mutations: A synonymous SNP in exon 5 of MCAD protects from deleterious mutations in a flanking exonic splicing enhancer. American Journal of Human Genetics, 80 (3). pp. 416-432. ISSN 0002-9297

Nogueira, F. T., Madi, S., Chitwood, D. H., Juarez, M. T., Timmermans, M. C. P. (April 2007) Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev, 21 (7). pp. 750-5. ISSN 0890-9369 (Print)

Nogueira, F. T. S., Timmermans, M. C. (November 2007) An Interplay Between Small Regulatory RNAs Patterns Leaves. Plant Signaling & Behavior, 2 (6). pp. 519-21. ISSN 1559-2316 (Print)

Nolan, D. J., Ciarrocchi, A., Mellick, A. S., Jaggi, J. S., Bambino, K., Gupta, S., Heikamp, E., McDevitt, M. R., Scheinberg, D. A., Benezra, R., Mittal, V. (June 2007) Bone marrow-derived endothelial progenitor cells are a major determinant of nascent tumor neovascularization. Genes Dev, 21 (12). pp. 1546-58. ISSN 0890-9369 (Print)

Norden-Zfoni, A., Desai, J., Manola, J., Beaudry, P., Force, J., Maki, R., Folkman, J., Bello, C., Baum, C., DePrimo, S. E., Shalinsky, D. R., Demetri, G. D., Heymach, J. V. (May 2007) Blood-based biomarkers of SU11248 activity and clinical outcome in patients with metastatic imatinib-resistant gastrointestinal stromal tumor. Clin Cancer Res, 13 (9). pp. 2643-50. ISSN 1078-0432 (Print)1078-0432 (Linking)

O'Farrell, P. A., Joshua-Tor, L. (January 2007) Mutagenesis and crystallographic studies of the catalytic residues of the papain family protease bleomycin hydrolase: new insights into active-site structure. Biochem J, 401 (2). pp. 421-8. ISSN 0264-6021 (Public Dataset)

Ohtsu, K., Smith, M. B., Emrich, S. J., Borsuk, L. A., Zhou, R. L., Chen, T. L., Zhang, X. L., Timmermans, M. C. P., Beck, J., Buckner, B., Janick-Buckner, D., Nettleton, D., Scanlon, M. J., Schnable, P. S. (November 2007) Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant Journal, 52 (3). pp. 391-404. ISSN 0960-7412

Onn, I., Aono, N., Hirano, M., Hirano, T. (2007) Reconstitution and subunit geometry of human condensin complexes. Embo Journal, 26 (4). pp. 1024-1034. ISSN 0261-4189

Ordway, J. M., Budiman, M. A., Korshunova, Y., Maloney, R. K., Bedell, J. A., Citek, R. W., Bacher, B., Peterson, S., Rohlfing, T., Hall, J., Brown, R., Lakey, N., Doerge, R. W., Martienssen, R. A., Leon, J., McPherson, J. D., Jeddeloh, J. A. (December 2007) Identification of novel high-frequency DNA methylation changes in breast cancer. PLoS ONE, 2 (12). e1314.

Osten, P., Grinevich, V., Cetin, A. (2007) Viral vectors: a wide range of choices and high levels of service. Handbook of Experimental Pharmacology (178). pp. 177-202. ISSN 0171-2004 (Print)

Ozaki, S., Kawakami, H., Nakamura, K., Fujikawa, N., Kagawa, W., Yokoyama, S., Kurumizaka, H., Katayama, T. (December 2007) Analysis on a novel functional structure in DnaA for regulating the duplex unwinding of chromosomal replication origin. Genes & Genetic Systems, 82 (6). p. 545. ISSN 1341-7568

Pal, B., Chan, N. C., Helfenbaum, L., Tan, K. L., Tansey, W. P., Gething, M. J. (February 2007) SCFCdc4-mediated degradation of the Hac1p transcription factor regulates the unfolded protein response in Saccharomyces cerevisiae. Molecular Biology of the Cell, 18 (2). pp. 426-440. ISSN 1059-1524

Papazoglu, C., Mills, A. A. (January 2007) p53: At the crossroad between cancer and ageing. Journal of Pathology, 211 (2). pp. 124-133. ISSN 0022-3417

Patschan, D., Michurina, T. V., Shi, H. K., Dolff, S., Brodsky, S. V., Vasilieva, T., Cohen-Gould, L., Winaver, J., Chander, P. N., Enikolopov, G. N., Goligorsky, M. S. (April 2007) Normal distribution and medullary-to-cortical shift of Nestin-expressing cells in acute renal ischemia. Kidney International, 71 (8). pp. 744-754. ISSN 0085-2538

Pedmale, U. V., Liscum, E. (July 2007) Regulation of phototropic signaling in Arabidopsis via phosphorylation state changes in the phototropin 1-interacting protein NPH3. J Biol Chem, 282 (27). pp. 19992-20001. ISSN 0021-9258 (Print)0021-9258

Petreanu, L. T., Huber, D., Sobczyk, A., Svoboda, K. (May 2007) Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections. Nat Neurosci, 10 (5). pp. 663-668. ISSN 1097-6256

Peunova, N., Scheinker, V., Ravi, K., Enikolopov, G. N. (December 2007) Nitric Oxide Coordinates Cell Proliferation and Cell Movements During Early Development of Xenopus. Cell Cycle, 6 (24). pp. 3132-44.

Pisters, P. W., O'Sullivan, B., Maki, R. G. (March 2007) Evidence-based recommendations for local therapy for soft tissue sarcomas. J Clin Oncol, 25 (8). pp. 1003-8. ISSN 1527-7755 (Electronic)0732-183X (Linking)

Prasanth, K. V. , Spector, D. L. (2007) Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes & Development, 21 (1). pp. 11-42. ISSN 0890-9369

Price, A. L., Patterson, N., Yu, F., Cox, D. R., Waliszewska, A., McDonald, G. J., Tandon, A., Schirmer, C., Neubauer, J., Bedoya, G., Duque, C., Villegas, A., Bortolini, M. C., Salzano, F. M., Gallo, C., Mazzotti, G., Tello-Ruiz, M., Riba, L., Aguilar-Salinas, C. A., Canizales-Quinteros, S., Menjivar, M., Klitz, W., Henderson, B., Haiman, C. A., Winkler, C., Tusie-Luna, T., Ruiz-Linares, A., Reich, D. (June 2007) A genomewide admixture map for Latino populations. American Journal of Human Genetics, 80 (6). pp. 1024-1036. ISSN 0002-9297

Qian, M., Pan, G., Sun, L., Feng, C., Xie, Z., Tully, T., Zhong, Y. (2007) Receptor-like tyrosine phosphatase PTP10D is required for long-term memory in Drosophila. Journal of Neuroscience, 27 (16). pp. 4396-4402. ISSN 02706474 (ISSN)

Rada-Iglesias, A., Ameur, A., Kapranov, P., Enroth, S., Komorowski, J., Gingeras, T. R., Wadelius, C. (May 2007) Genome-wide gene regulatory networks for USF1 and USF2 in liver cells - implications for familial combined hyperlipidemia. European Journal of Clinical Investigation, 37 (S1). p. 76. ISSN 0014-2972

Rankin, C., Dubnau, J. T. (2007) Memories of worms and flies: from gene to behavior. In: Invertebrate neurobiology. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.. ISBN 9780879698195

Ray, S. S., Sengupta, R., Tiso, M., Haque, M. M., Sahoo, R., Konas, D. W., Aulak, K., Regulski, M. R., Tully, T., Stuehr, D. J., Ghosh, S. (October 2007) Reductase Domain of Drosophila melanogaster Nitric-Oxide Synthase: Redox Transformations, Regulation, and Similarity to Mammalian Homologues. Biochemistry, 46 (42). pp. 11865-11873. ISSN 0006-2960 (Print)

Ray, S. S., Tejero, J., Wang, Z. Q., Dutta, T., Bhattacharjee, A., Regulski, M. R., Tully, T., Ghosh, S., Stuehr, D. J. (October 2007) Oxygenase Domain of Drosophila melanogaster Nitric Oxide Synthase: Unique Kinetic Parameters Enable a More Efficient NO Release. Biochemistry, 46 (42). pp. 11857-11864. ISSN 0006-2960 (Print)

Riske, F., Schroeder, J. B., Belliveau, J., Kang, X., Kutzko, J., Menon, M. K. (2007) The use of chitosan as a flocculant in mammalian cell culture dramatically improves clarification throughput without adversely impacting monoclonal antibody recovery. Journal of Biotechnology, 128 (4). pp. 813-823. ISSN 01681656 (ISSN)

Riske, F., Smith, M., Menon, M., Goetschalck, S., Goidsenhoven, I. V., Krul, A., Pimpaneau, V., Renaers, I., Van Tichelt, N., Van Houdt, K., Hayes, M., Lawrence, C., Bigelow, R., Schroeder, J. B. (2007) A potential generic downstream process using Cibracon Blue resin at very high loading capacity produces a highly purified monoclonal antibody preparation from cell culture harvest. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 848 (1). pp. 108-115. ISSN 15700232

Rodriguez, R., Adlington, R. M., Eade, S. J., Walter, M. W., Baldwin, J. E., Moses, J. E. (May 2007) Total synthesis of cyercene A and the biomimetic synthesis of (+/-)-9,10-deoxytridachione and (+/-)-ocellapyrone A. Tetrahedron, 63 (21). pp. 4500-4509. ISSN 0040-4020

Rozowsky, J. S., Newburger, D., Sayward, F., Wu, J., Jordan, G., Korbel, J. O., Nagalakshmi, U., Yang, J., Zheng, D., Guigó, R., Gingeras, T. R., Weissman, S., Miller, P., Snyder, M., Gerstein, M. B. (2007) The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci. Genome Research, 17 (6). pp. 732-745. ISSN 10889051 (ISSN)

Rubin, C. T., Capilla, E., Luu, Y. K., Busa, B., Crawford, H., Nolan, D. J., Mittal, V., Rosen, C. J., Pessin, J. E., Judex, S. (November 2007) Adipogenesis is inhibited by brief, daily exposure to high-frequency, extremely low-magnitude mechanical signals. Proc Natl Acad Sci U S A, 104 (45). pp. 17879-84.

Sarkar, A, Parikh, N, Hearn, S. A., Fuller, M. T., Tazuke, S. I., Schulz, C. (July 2007) Antagonistic Roles of Rac and Rho in Organizing the Germ Cell Microenvironment. Current Biology, 17 (14). pp. 1253-1258.

Sarkar, A. K., Luijten, M., Miyashima, S., Lenhard, M., Hashimoto, T., Nakajima, K., Scheres, B., Heidstra, R., Laux, T. (April 2007) Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature, 446 (7137). pp. 811-4. ISSN 1476-4687 (Electronic)

Sartorius, A., Henn, F. A. (2007) Deep brain stimulation of the lateral habenula in treatment resistant major depression. Med Hypotheses, 69 (6). pp. 1305-8. ISSN 0306-9877 (Print)0306-9877 (Linking)

Sartorius, A., Mahlstedt, M. M., Vollmayr, B., Henn, F. A., Ende, G. (September 2007) Elevated spectroscopic glutamate/gamma-amino butyric acid in rats bred for learned helplessness. Neuroreport, 18 (14). pp. 1469-73. ISSN 0959-4965 (Print)0959-4965 (Linking)

Sasaki, D., Kondo, S., Maeda, N., Gingeras, T. R., Hasegawa, Y., Hayashizaki, Y. (2007) Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: Causes of signal variation and false positive signals. Genomics, 89 (4). pp. 541-551. ISSN 08887543 (ISSN)

Sato, T. R., Gray, N. W., Mainen, Z. F., Svoboda, K. (July 2007) The Functional Microarchitecture of the Mouse Barrel Cortex. PLoS Biology, 5 (7). e189.

Schatz, M. C., Phillippy, A. M., Shneiderman, B., Salzberg, S. L. (2007) Hawkeye: An interactive visual analytics tool for genome assemblies. Genome Biology, 8 (3). ISSN 14747596 (ISSN)

Schatz, M. C., Trapnell, C., Delcher, A. L., Varshney, A. (2007) High-throughput sequence alignment using Graphics Processing Units. Bmc Bioinformatics, 8. ISSN 14712105 (ISSN)

Schmitt, A., Fendt, M., Zink, M., Ebert, U., Starke, M., Berthold, M., Herb, A., Petroianu, G., Falkai, P., Henn, F. A. (February 2007) Altered NMDA receptor expression and behavior following postnatal hypoxia: potential relevance to schizophrenia. J Neural Transm, 114 (2). pp. 239-48. ISSN 0300-9564 (Print)0300-9564 (Linking)

Schneider, F., Habel, U., Reske, M., Kellermann, T., Stocker, T., Shah, N. J., Zilles, K., Braus, D. F., Schmitt, A., Schlosser, R., Wagner, M., Frommann, I., Kircher, T., Rapp, A., Meisenzahl, E., Ufer, S., Ruhrmann, S., Thienel, R., Sauer, H., Henn, F. A., Gaebel, W. (January 2007) Neural correlates of working memory dysfunction in first-episode schizophrenia patients: an fMRI multi-center study. Schizophr Res, 89 (1-3). pp. 198-210. ISSN 0920-9964 (Print)

Schones, D. E., Smith, A. D., Zhang, M. Q. (January 2007) Statistical significance of cis-regulatory modules. Bmc Bioinformatics, 8. p. 16. ISSN 1471-2105

Schuck, S., Stenlund, A. (April 2007) ATP-dependent minor groove recognition of TA base pairs is required for template melting by the E1 initiator protein. J Virol, 81 (7). pp. 3293-3302. ISSN 0022-538X (Print)

Scott, C. L., Gil, J., Hernando, E., Teruya-Feldstein, J., Narita, M., Martinez, D., Visakorpi, T., Mu, D., Cordon-Cardo, C., Peters, G., Beach, D., Lowe, S. W. (March 2007) Role of the chromobox protein CBX7 in lymphomagenesis. Proc Natl Acad Sci U S A, 104 (13). pp. 5389-94. ISSN 0027-8424 (Print)

Sebat, J. (July 2007) Major changes in our DNA lead to major changes in our thinking. Nat Genet, 39 (7 Supp). S3-5. ISSN 1061-4036 (Print)

Sebat, J., Lakshmi, B., Malhotra, D., Troge, J. E., Lese-Martin, C., Walsh, T., Yamrom, B., Yoon, S., Krasnitz, A., Kendall, J. T., Leotta, A., Pai, D., Zhang, R., Lee, Y. H., Hicks, J. B., Spence, S. J., Lee, A. T., Puura, K., Lehtimaki, T., Ledbetter, D., Gregersen, P. K., Bregman, J., Sutcliffe, J. S., Jobanputra, V., Chung, W., Warburton, D., King, M. C., Skuse, D., Geschwind, D. H., Gilliam, T. C., Ye, K., Wigler, M. H. (April 2007) Strong Association of De Novo Copy Number Mutations with Autism. Science, 316 (5823). pp. 445-449.

Shadlen, M. N., Hanks, T. D., Churchland, A. K., Kiani, R., Yang, T. J. (2007) The Speed and Accuracy of a Simple Perceptual Decision: A Mathematical Primer. In: Bayesian Brain: Probabilistic Approaches to Neural Coding (Computational Neuroscience). M. I. T. Press, Cambridge, MA, pp. 209-238. ISBN ISBN-10: 0-262-51601-2

Shahri, H. H., Namata, G., Navlakha, S., Deshpande, A., Roussopoulos, N. (September 2007) A graph-based approach to vehicle tracking in traffic camera video streams. Proceedings of the 4th workshop on Data management for sensor networks: in conjunction with 33rd International Conference on Very Large Data Bases , 273 . ACM International Conference Proceeding Series, pp. 19-24. ISBN 9781595939111 (ISBN)

Shaw, S. D., Chakrabarti, S., Ghosh, G., Krainer, A. R. (2007) Deletion of the N-terminus of SF2/ASF permits RS-domain-independent pre-mRNA splicing. PLoS ONE, 2 (9). e854. ISSN 1932-6203 (Electronic)

Shintomi, K., Hirano, T. (April 2007) How are cohesin rings opened and closed? Trends Biochem Sci, 32 (4). pp. 154-157. ISSN 0968-0004 (Print)

Siddiqui, K., Stillman, B. (November 2007) ATP dependent assembly of the human origin recognition complex. Journal of Biological Chemistry, 282 (44). pp. 32370-32383. ISSN 0021-9258

Siepel, A., Diekhans, M., Brejova, B., Langton, L., Stevens, M., Comstock, C. L., Davis, C., Ewing, B., Oommen, S., Lau, C., Yu, H. C., Li, J., Roe, B. A., Green, P., Gerhard, D. S., Temple, G., Haussler, D., Brent, M. R. (December 2007) Targeted discovery of novel human exons by comparative genomics. Genome Res, 17 (12). pp. 1763-73. ISSN 1088-9051 (Print)1088-9051

Singer, S., Socci, N. D., Ambrosini, G., Sambol, E., Decarolis, P., Wu, Y., O'Connor, R., Maki, R., Viale, A., Sander, C., Schwartz, G. K., Antonescu, C. R. (July 2007) Gene expression profiling of liposarcoma identifies distinct biological types/subtypes and potential therapeutic targets in well-differentiated and dedifferentiated liposarcoma. Cancer Res, 67 (14). pp. 6626-36. ISSN 0008-5472 (Print)0008-5472 (Linking)

Slotkin, R. Keith, Martienssen, Robert (April 2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet, 8 (4). pp. 272-85. ISSN 1471-0056 (Print)

Smith, A. D., Sumazin, P., Zhang, M. Q. (January 2007) Tissue-specific regulatory elements in mammalian promoters. Molecular Systems Biology, 3. ISSN 1744-4292

Sobczyk, A., Svoboda, K. (January 2007) Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ current. Neuron, 53 (1). pp. 17-24. ISSN 0896-6273 (Print)

Sobral, Bruno W. S., Mangalam, Harry, Siepel, Adam, Mendes, Pedro, Pecherer, Rob, McLaren, Graham (2007) Bioinformatics for Rice Resources. In: Novartis Foundation Symposium 236 - Rice Biotechnology: Improving Yield, Stress Tolerance and Grain Quality. John Wiley & Sons, Ltd., pp. 59-84. ISBN 9780470515778

Sotillo, R., Hernando, E., Díaz-Rodríguez, E., Teruya-Feldstein, J., Cordón-Cardo, C., Lowe, S. W., Benezra, R. (January 2007) Mad2 overexpression promotes aneuploidy and tumorigenesis in mice. Cancer Cell, 11 (1). pp. 9-23. ISSN 1535-6108

Speck, C., Stillman, B. (April 2007) Cdc6 ATPase activity regulates ORC center dot Cdc6 stability and the selection of specific DNA sequences as origins of DNA replication. Journal of Biological Chemistry, 282 (16). pp. 11705-11714. ISSN 0021-9258

Speck, C., Stillman, B. (July 2007) Initiation of DNA replication - Assembly of a molecular machine depends on origin DNA. Febs Journal, 274 (S1). p. 72. ISSN 1742-464X

Spector, D. L. (2007) Nuclear Organization and Gene Expression. In: From DNA to Proteins: The Multiple Levels of Regulation, The Biomedical & Life Sciences Collection. Henry Stewart Talks Ltd, London.

Spector, D. L. (April 2007) Nuclear retained rnas regulating gene expression. Faseb Journal, 21 (5). A97. ISSN 0892-6638

Stark, A., Kheradpour, P., Parts, L., Brennecke, J., Hodges, E., Hannon, G. J., Kellis, M. (November 2007) Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res, 17 (12). pp. 1865-1879.

Stark, A., Lin, M. F., Kheradpour, P., Pedersen, J. S., Parts, L., Carlson, J. W., Crosby, M. A., Rasmussen, M. D., Roy, S., Deoras, A. N., Ruby, J. G., Brennecke, J., Hodges, E., Hinrichs, A. S., Caspi, A., Park, S. W., Han, M. V., Maeder, M. L., Polansky, B. J., Robson, B. E., Aerts, S., van Helden, J., Hassan, B., Gilbert, D. G., Eastman, D. A., Rice, M., Weir, M., Hahn, M. W., Park, Y., Dewey, C. N., Pachter, L., Kent, W. J., Haussler, D., Lai, E. C., Bartel, D. P., Hannon, G. J., Kaufman, T. C., Eisen, M. B., Clark, A. G., Smith, D., Celniker, S. E., Gelbart, W. M., Kellis, M. (November 2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature, 450 (7167). pp. 219-232. ISSN 0028-0836

Stegh, A. H., Kim, H., Bachoo, R. M., Forloney, K. L., Zhang, J., Schulze, H., Park, K., Hannon, G. J., Yuan, J. Y., Louis, D. N., DePinho, R. A., Chin, L. (January 2007) Bcl2L12 inhibits post-mitochondrial apoptosis signaling in glioblastoma. Genes Dev, 21 (1). pp. 98-111. ISSN 0890-9369

Stegmeier, F., Rape, M., Draviam, V. M., Nalepa, G., Sowa, M. E., Ang, X. L. L., McDonald, E. R., Li, M. Z., Hannon, G. J., Sorger, P. K., Kirschner, M. W., Harper, J. W., Elledge, S. J. (April 2007) Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities. Nature, 446 (7138). pp. 876-881. ISSN 0028-0836

Stein, L. D. (January 2007) Unix survival guide. Curr Protoc Bioinformatics, Append. Appendix 1C.

Stein, L. D. (March 2007) X Window System survival guide. Curr Protoc Bioinformatics, Append. Appendix 1D.

Stillman, B., Stewart, D. (2007) Clocks and Rhythms. In: Cold Spring Harbor Symposia on Quantitative Biology LXXII: Clocks and Rhythms, Cold Spring Harbor.

Stillman, Bruce (2007) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Szabo, K., Hirsch, J. G., Krause, M., Ende, G., Henn, F. A., Sartorius, A., Gass, A. (April 2007) Diffusion weighted MRI in the early phase after electroconvulsive therapy. Neurol Res, 29 (3). pp. 256-9. ISSN 0161-6412 (Print)0161-6412 (Linking)

Takahashi, H., Shin, Y., Cho, S. J., Zago, W. M., Nakamura, T., Gu, Z., Ma, Y., Furukawa, H., Liddington, R., Zhang, D., Tong, G., Chen, H. S., Lipton, S. A. (January 2007) Hypoxia enhances S-nitrosylation-mediated NMDA receptor inhibition via a thiol oxygen sensor motif. Neuron, 53 (1). pp. 53-64. ISSN 0896-6273 (Print)0896-6273 (Linking)

Tegay, D. H., Lane, A. H., Roohi, J., Hatchwell, E. (March 2007) Contiguous gene deletion involving L1CAM and AVPR2 causes X-linked hydrocephalus with nephrogenic diabetes insipidus. American Journal of Medical Genetics Part A, 143A (6). pp. 594-598. ISSN 1552-4825

Tervo, D. G. (March 2007) Development of Molecular Systems for the Inactivation of Synaptic Transmission. PhD thesis, Cold Spring Harbor Laboratory.

Tervo, D. G. R., Karpova, A. Y. (October 2007) Rapidly inducible, genetically targeted inactivation of neural and synaptic activity in vivo. Current Opinion in Neurobiology, 17 (5). 581-586 .

Tolia, N. H., Joshua-Tor, L. (January 2007) Slicer and the Argonautes. Nature Chemical Biology, 3 (1). pp. 36-43. ISSN 1552-4450

Tolstorukov, M. Y., Colasanti, A. V., McCandlish, D. M., Olson, W. K., Zhurkin, V. B. (August 2007) A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning. J Mol Biol, 371 (3). pp. 725-38. ISSN 0022-2836 (Print)0022-2836 (Linking)

Tonks, N. K. (October 2007) The protein tyrosine phosphatase superfamily of enzymes. Toxicology Letters, 172 (Supple). S10-S11. ISSN 0378-4274

Tonks, N. K., Muthuswamy, S. K. (March 2007) A Brake Becomes an Accelerator: PTP1B-A New Therapeutic Target for Breast Cancer. Cancer Cell, 11 (3). pp. 214-6. ISSN 1535-6108 (Print)

Trotman, L. C., Wang, X., Alimonti, A., Chen, Z., Teruya-Feldstein, J., Yang, H., Pavletich, N. P., Carver, B. S., Cordon-Cardo, C., Erdjument-Bromage, H., Tempst, P., Chi, S. G., Kim, H. J., Misteli, T., Jiang, X., Pandolfi, P. P. (January 2007) Ubiquitination regulates PTEN nuclear import and tumor suppression. Cell, 128 (1). pp. 141-56.

Turck, F., Roudier, F., Farrona, S., Martin-Magniette, M. L., Guillaume, E., Buisine, N., Gagnot, S., Martienssen, R. A., Coupland, G., Colot, V. (June 2007) Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. Plos Genetics, 3 (6). pp. 855-866. ISSN 1553-7390

Tyagi, S., Chabes, A. L., Wysocka, J., Herr, W. (July 2007) E2F Activation of S Phase Promoters via Association with HCF-1 and the MLL Family of Histone H3K4 Methyltransferases. Molecular Cell, 27 (1). pp. 107-119. ISSN 1097-2765

Uchida, N., Mainen, Z. F. (2007) Odor concentration invariance by chemical ratio coding. Front Syst Neurosci, 1. p. 3.

Valente, D., Golani, I., Mitra, P. P. (October 2007) Analysis of the Trajectory of Drosophila melanogaster in a Circular Open Field Arena. PLoS ONE, 2 (10). e1083. ISSN 1932-6203 (Electronic)

Valente, D., Wang, H., Andrews, P., Mitra, P. P. (October 2007) Characterizing animal behavior through audio and video signal processing. IEEE Multimedia, 14 (4). pp. 32-41. ISSN 1070-986X

Vasquez, V., Cortes, D. M., Furukawa, H., Perozo, E. (June 2007) An optimized purification and reconstitution method for the MscS channel: strategies for spectroscopical analysis. Biochemistry, 46 (23). pp. 6766-73. ISSN 0006-2960 (Print)0006-2960 (Linking)

Vastrik, I., D'Eustachio, P., Schmidt, E., Joshi-Tope, G., Gopinath, G., Croft, D., de Bono, B., Gillespie, M., Jassal, B., Lewis, S., Matthews, L., Wu, G., Birney, E., Stein, L. D. (2007) Reactome: a knowledge base of biologic pathways and processes. Genome Biol, 8 (3). R39. ISSN 1474-760X

Vaughn, M. W., Tanurdzic, M., Lippman, Z. B., Jiang, H., Carrasquillo, R., Rabinowicz, P. D., Dedhia, N., McCombie, W. R., Agier, N., Bulski, A., Colot, V., Doerge, R. W., Martienssen, R. A. (July 2007) Epigenetic natural variation in Arabidopsis thaliana. PLoS Biology, 5 (7). pp. 1617-1629. ISSN 1544-9173

Vela, E., Hilari, J. M., Roca, X., Muñoz-Mármol, A. M., Ariza, A., Isamat, M. (December 2007) Multisite and bidirectional exonic splicing enhancer in CD44 alternative exon v3. RNA, 13 (12). pp. 2312-2323.

Venkitaramani, D. V., Chin, J., Netzer, W. J., Gouras, G. K., Lesne, S., Malinow, R., Lombroso, P. J. (October 2007) beta-amyloid modulation of synaptic transmission and plasticity. Journal of Neuroscience, 27 (44). pp. 11832-11837. ISSN 0270-6474

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (May 2007) Interspike interval densities of resonate and fire neurons. Biosystems, 89 (1-3). pp. 63-8. ISSN 0303-2647 (Print)0303-2647 (Linking)

Vollmayr, B., Mahlstedt, M. M., Henn, F. A. (August 2007) Neurogenesis and depression: what animal models tell us about the link. Eur Arch Psychiatry Clin Neurosci, 257 (5). pp. 300-3. ISSN 0940-1334 (Print)0940-1334 (Linking)

Wang, X., Trotman, L. C., Koppie, T., Alimonti, A., Chen, Z., Gao, Z., Wang, J., Erdjument-Bromage, H., Tempst, P., Cordon-Cardo, C., Pandolfi, P. P., Jiang, X. (January 2007) NEDD4-1 Is a Proto-Oncogenic Ubiquitin Ligase for PTEN. Cell, 128 (1). pp. 129-139. ISSN 00928674 (ISSN)

Wang, Yalin, Dubnau, Josh, Tully, Tim, Zhong, Yi (2007) Chapter 3 - Genetics in learning and memory. In: Neurobiology of Learning and Memory (Second Edition). Academic Press, Burlington, pp. 103-127. ISBN 978-0-12-372540-0

Wang, Zihua, Wang, Jingbo, Tantoso, Erwin, Wang, Baoshuang, Tai, Amy YP, Ooi, London LPJ, Chong, Samuel S, Lee, Caroline GL (June 2007) Signatures of recent positive selection at the ATP-binding cassette drug transporter superfamily gene loci. Human Molecular Genetics, 16 (11). pp. 1367-1380. ISSN 0964-6906

Ware, D. H. (2007) Gramene. Methods Mol Biol, 406. pp. 315-329. ISSN 1064-3745 (Print)

Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M., Gerstein, M. B., Reymond, A., Hofacker, I. L., Stadler, P. F. (2007) Structured RNAs in the ENCODE selected regions of the human genome. Genome Research, 17 (6). pp. 852-864. ISSN 10889051 (ISSN) (Public Dataset)

Wee, Tse-Luen, Tzeng, Yan-Kai, Han, Chau-Chung, Chang, Huan-Cheng, Fann, Wunshain, Hsu, Jui-Hung, Chen, Kuan-Ming, Yu, Yueh-Chung (September 2007) Two-photon excited fluorescence of nitrogen-vacancy centers in proton-irradiated type Ib diamond. Journal of Physical Chemistry A, 111 (38). pp. 9379-9386. ISSN 1089-5639

Wendel, H. G., Silva, R. L., Malina, A., Mills, J. R., Zhu, H., Ueda, T., Watanabe-Fukunaga, R., Fukunaga, R., Teruya-Feldstein, J., Pelletier, J., Lowe, S. W. (December 2007) Dissecting eIF4E action in tumorigenesis. Genes Dev, 21 (24). pp. 3232-7.

Wimmer, K., Roca, X., Beiglbock, H., Callens, T., Etzler, J., Rao, A. R., Krainer, A. R., Fonatsch, C., Messiaen, L. (June 2007) Extensive in silico analysis of NF1 splicing defects uncovers determinants for splicing outcome upon 5 ' splice-site disruption. Human Mutation, 28 (6). pp. 599-612. ISSN 1059-7794

Witkowski, J. (2007) A life worth writing about. Nature, 449 (7164). pp. 785-786. ISSN 1476-4687 (Electronic)

Wu, C. H., Xia, S, Fu, T. F., Wang, H., Chen, Y. H., Leong, D., Chiang, A. S., Tully, T. (December 2007) Specific requirement of NMDA receptors for long-term memory consolidation in Drosophila ellipsoid body. Nat Neurosci, 10 (12). pp. 1578-1586.

Xia, S., Tully, T. (October 2007) Segregation of odor identity and intensity during odor discrimination in Drosophila mushroom body. PLoS Biology, 5 (10). e264.

Xiao, Yun, Donghwi, Kim, Stanacevic, M., Mainen, Z. F. (2007) Low-Power High-Resolution 32-channel Neural Recording System. Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1. pp. 2373-2376.

Xue, W., Zender, L., Miething, C., Dickins, R. A., Hernando, E., Krizhanovsky, V., Cordon-Cardo, C., Lowe, S. W. (February 2007) Senescence and tumour clearance is triggered by p53 restoration in murine liver carcinomas. Nature, 445 (7128). pp. 656-660. ISSN 0028-0836

Yang, Y., Tashman, A. P., Lee, J. Y., Yoon, S., Mao, W., Ahn, K., Kim, W., Mendell, N. R., Gordon, D., Finch, S. J. (2007) Mixture modeling of microarray gene expression data. BMC Proc, 1 (Suppl ). S50.

Yang, Z., Jiang, H., Zhao, F., Shankar, D. B., Sakamoto, K. M., Zhang, M. Q., Lin, S. (August 2007) A highly conserved regulatory element controls hematopoietic expression of GATA-2 in zebrafish. Bmc Developmental Biology, 7. p. 97. ISSN 1471-213X

Yuan, C. C., Zhao, X., Florens, L., Swanson, S. K., Washburn, M. P., Hernandez, N. (December 2007) CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription. Mol Cell Biol, 27 (24). pp. 8729-8738. ISSN 0270-7306 (Print)

Yuneva, M., Zamboni, N., Oefner, P., Sachidanandam, R., Lazebnik, Y. (July 2007) Deficiency in glutamine but not glucose induces MYC-dependent apoptosis in human cells. J Cell Biol, 178 (1). pp. 93-105. ISSN 0021-9525 (Print)

Zador, A. M., Mombaerts, P. (August 2007) Neuronal circuitry and population activity. Current Opinion in Neurobiology, 17 (4). pp. 395-6. ISSN 0959-4388 (Print)

Zaratiegui, B. M., Irvine, D. V., Martienssen, R. A. (February 2007) Noncoding RNAs and gene silencing. Cell, 128 (4). pp. 763-76. ISSN 0092-8674 (Print)

Zender, L., Kubicka, S. (2007) Suppression of apoptosis in the liver by systemic and local delivery of small-interfering RNAs. Methods Mol Biol, 361. pp. 217-26. ISSN 1-59745-208-4

Zender, L., Zuber, J., Lowe, S. W. (May 2007) SnapShot: Genetic mouse models of cancer. Cell, 129 (4). p. 838. ISSN 0092-8674

Zhang, C., Krainer, A. R., Zhang, M. Q. (October 2007) Evolutionary impact of limited splicing fidelity in mammalian genes. Trends Genet, 23 (10). pp. 484-488. ISSN 0168-9525 (Print)

Zhang, C., Zhang, X., Zhang, M. Q., Li, Y. (January 2007) Neighbor number, valley seeking and clustering. Pattern Recognition Letters, 28 (2). pp. 173-180. ISSN 0167-8655

Zhang, C. L., Hastings, M. L., Krainer, A. R., Zhang, M. Q. (September 2007) Dual-specificity splice sites function alternatively as 5 ' and 3 ' splice sites. Proceedings of the National Academy of Sciences of the United States of America, 104 (38). pp. 15028-15033. ISSN 0027-8424

Zhang, J., Jiang, B., Li, M., Tromp, J., Zhang, X. G., Zhang, M. Q. (March 2007) Computing exact P-values for DNA motifs. Bioinformatics, 23 (5). pp. 531-537. ISSN 1367-4803

Zhang, M. Q. (September 2007) Computational analyses of eukaryotic promoters. Bmc Bioinformatics, 8 Supp (6). S3. ISSN 1471-2105 (Electronic)

Zhang, X., Madi, S., Borsuk, L., Nettleton, D., Elshire, R. J., Buckner, B., Janick-Buckner, D., Beck, J., Timmermans, M. C. P., Schnable, P. S., Scanlon, M. J. (June 2007) Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. Plos Genetics, 3 (6). pp. 1040-1052. ISSN 1553-7390

Zhang, Z., Krainer, A. R. (July 2007) Splicing remodels messenger ribonucleoprotein architecture via eIF4A3-dependent and -independent recruitment of exon junction complex components. Proc Natl Acad Sci U S A, 104 (28). pp. 11574-9. ISSN 0027-8424 (Print)

Zhao, T., Li, G. L., Mi, S. J., Li, S., Hannon, G. J., Wang, X. J., Qi, Y. J. (May 2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev, 21 (10). pp. 1190-1203. ISSN 0890-9369

Zhao, X., Leotta, A., Kustanovich, V., Lajonchere, C., Geschwind, D. H., Law, K., Law, P., Qiu, S., Lord, C., Sebat, J., Ye, K., Wigler, M. H. (July 2007) A unified genetic theory for sporadic and inherited autism. Proc Natl Acad Sci U S A, 104 (31). pp. 12831-12836. ISSN 0027-8424 (Print)

Zhao, Xi., Xuan, Z. Y., Zhang, M. Q. (February 2007) Boosting with stumps for predicting transcription start sites. Genome Biol, 8 (2). R17. ISSN 1465-6914 (Electronic)

Zheng, D., Frankish, A., Baertsch, R., Kapranov, P., Reymond, A., Siew, W. C., Lu, Y., Denoeud, F., Antonarakis, S. E., Snyder, M., Ruan, Y., Wei, C. L., Gingeras, T. R., Guigó, R., Harrow, J., Gerstein, M. B. (2007) Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution. Genome Research, 17 (6). pp. 839-851. ISSN 10889051 (ISSN)

Zhu, P., Aller, M. I., Baron, U., Cambridge, S., Bausen, M., Herb, J., Sawinski, J., Cetin, A., Osten, P., Nelson, M. L., Kugler, S., Seeburg, P. H., Sprengel, R., Hasan, M. T. (June 2007) Silencing and un-silencing of tetracycline-controlled genes in neurons. PLoS ONE, 2 (6). e533. ISSN 1932-6203 (Electronic)

Zink, M., Vollmayr, B., Gebicke-Haerter, P. J., Henn, F. A., Thome, J. (May 2007) Reduced expression of complexins I and II in rats bred for learned helplessness. Brain Res, 1144. pp. 202-8. ISSN 0006-8993 (Print)0006-8993 (Linking)

de la Bastide, M., McCombie, W. R. (March 2007) Assembling genomic DNA sequences with PHRAP. Current Protocols in Bioinformatics (Unit 1). ISSN 1934-340X (Electronic)1934-3396 (Linking)

This list was generated on Tue Apr 23 17:31:20 2024 EDT.
CSHL HomeAbout CSHLResearchEducationNews & FeaturesCampus & Public EventsCareersGiving