Items where Year is 2015

Abeshouse, A., Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C. D., Annala, M., Aprikian, A., Armenia, J., Arora, A., Auman, J. T., Balasundaram, M., Balu, S., Barbieri, C. E., Bauer, T., Benz, C. C., Bergeron, A., Beroukhim, R., Berrios, M., Bivol, A., Bodenheimer, T., Boice, L., Bootwalla, M. S., Borges Dos Reis, R., Boutros, P. C., Bowen, J., Bowlby, R., Boyd, J., Bradley, R. K., Breggia, A., Brimo, F., Bristow, C. A., Brooks, D., Broom, B. M., Bryce, A. H., Bubley, G., Burks, E., Butterfield, Y. S. N., Button, M., Canes, D., Carlotti, C. G., Carlsen, R., Carmel, M., Carroll, P. R., Carter, S. L., Cartun, R., Carver, B. S., Chan, J. M., Chang, M. T., Chen, Y., Cherniack, A. D., Chevalier, S., Chin, L., Cho, J., Chu, A., Chuah, E., Chudamani, S., Cibulskis, K., Ciriello, G., Clarke, A., Cooperberg, M. R., Corcoran, N. M., Costello, A. J., Cowan, J., Crain, D., Curley, E., David, K., Demchok, J. A., Demichelis, F., Dhalla, N., Dhir, R., Doueik, A., Drake, B., Dvinge, H., Dyakova, N., Felau, I., Ferguson, M. L., Frazer, S., Freedland, S., Fu, Y., Gabriel, S. B., Gao, J., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gerstein, M. B., Getz, G., Godwin, A. K., Gopalan, A., Graefen, M., Graim, K., Gribbin, T., Guin, R., Gupta, M., Hadjipanayis, A., Haider, S., Hamel, L., Hayes, D. N., Heiman, D. I., Hess, J., Hoadley, K. A., Holbrook, A. H., Holt, R. A., Holway, A., Hovens, C. M., Hoyle, A. P., Huang, M., Hutter, C. M., Ittmann, M., Iype, L., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Juhl, H., Kahles, A., Kane, C. J., Kasaian, K., Kerger, M., Khurana, E., Kim, J., Klein, R. J., Kucherlapati, R., Lacombe, L., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E. S., Latour, M., Lawrence, M. S., Lau, K., Lebien, T., Lee, D., Lee, S., Lehmann, K. V., Leraas, K. M., Leshchiner, I., Leung, R., Libertino, J. A., Lichtenberg, T. M., Lin, P., Linehan, W. M., Ling, S., Lippman, S. M., Liu, J., Liu, W., Lochovsky, L., Loda, M., Logothetis, C., Lolla, L., Longacre, T., Lu, Y., Luo, J., Ma, Y., Mahadeshwar, H. S., Mallery, D., Mariamidze, A., Marra, M. A., Mayo, M., McCall, S., McKercher, G., Meng, S., Mes-Masson, A. M., Merino, M. J., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Shaw, K. R. M., Minner, S., Moinzadeh, A., Moore, R. A., Morris, S., Morrison, C., Mose, L. E., Mungall, A. J., Murray, B. A., Myers, J. B., Naresh, R., Nelson, J., Nelson, M. A., Nelson, P. S., Newton, Y., Noble, M. S., Noushmehr, H., Nykter, M., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paulauskis, J., Penny, R., Perou, C. M., Piché, A., Pihl, T., Pinto, P. A., Prandi, D., Protopopov, A., Ramirez, N. C., Rao, A., Rathmell, W. K., Rätsch, G., Ren, X., Reuter, V. E., Reynolds, S. M., Rhie, S. K., Rieger-Christ, K., Roach, J., Robertson, A. G., Robinson, B., Rubin, M. A., Saad, F., Sadeghi, S., Saksena, G., Saller, C., Salner, A., Sanchez-Vega, F., Sander, C., Sandusky, G., Sauter, G., Sboner, A., Scardino, P. T., Scarlata, E., Schein, J. E., Schlomm, T., Schmidt, L. S., Schultz, N., Schumacher, S. E., Seidman, J., Neder, L., Seth, S., Sharp, A., Shelton, C., Shelton, T., Shen, H., Shen, R., Sherman, M., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simko, J., Simon, R., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Soloway, M. G., Song, X., Sorcini, A., Sougnez, C., Stepa, S., Stewart, C., Stewart, J., Stuart, J. M., Sullivan, T. B., Sun, C., Sun, H., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Tarvin, K., Taylor, B. S., Teebagy, P., Tenggara, I., Têtu, B., Tewari, A., Thiessen, N., Thompson, T., Thorne, L. B., Tirapelli, D. P., Tomlins, S. A., Trevisan, F. A., Troncoso, P., True, L. D., Tsourlakis, M. C., Tyekucheva, S., Van Allen, E., Van Den Berg, D. J., Veluvolu, U., Verhaak, R., Vocke, C. D., Voet, D., Wan, Y., Wang, Q., Wang, W., Wang, Z., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wise, L., Witte, J., Wu, C. C., Wu, J., Wu, Y., Xu, A. W., Yadav, S. S., Yang, L., Yang, L., Yau, C., Ye, H., Yena, P., Zeng, T., Zenklusen, J. C., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zhong, Y., Zhu, K., Zmuda, E. (2015) The Molecular Taxonomy of Primary Prostate Cancer. Cell, 163 (4). pp. 1011-1025. ISSN 0092-8674

Ahrens, S., Jaramillo, S., Yu, K., Ghosh, S., Hwang, G., Paik, R., Lai, C., He, M., Huang, Z. J., Li, B. (January 2015) ErbB4 regulation of a thalamic reticular nucleus circuit for sensory selection. Nature Neuroscience, 18. pp. 104-111. ISSN 1097-6256

Akerman, M., Fregoso, O. I., Das, S., Ruse, C., Jensen, M. A., Pappin, D. J., Zhang, M. Q., Krainer, A. R. (June 2015) Differential connectivity of splicing activators and repressors to the human spliceosome. Genome Biol, 16 (1). p. 119. ISSN 1465-6914 (Electronic)1465-6906 (Linking)

Akman, H. B., Selcuklu, S. D., Donoghue, M. T., Akhavantabasi, S., Sapmaz, A., Spillane, C., Yakicier, M. C., Erson-Bensan, A. E. (May 2015) ALCAM is indirectly modulated by miR-125b in MCF7 cells. Tumour Biol, 36 (5). pp. 3511-20. ISSN 1423-0380 (Electronic)1010-4283 (Linking)

Al-Jouie, A., Esfandiari, M., Ramakrishnan, S., Roshan, U. (September 2015) Chi8: a GPU program for detecting significant interacting SNPs with the Chi-square 8-df test. BMC Res Notes, 8. p. 436. ISSN 1756-0500 (Electronic)1756-0500 (Linking)

Alexander, Katherine A, Wang, Xu, Shibata, Maho, Clark, Andrew G, García-García, María J (November 2015) TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming. Cell Reports, 13 (6). pp. 1194-1205. ISSN 2211-1247

Almeida, Ana S, Kees, Tim, Egeblad, Mikala (October 2015) Modulating innate-adaptive immune cell interactions to achieve tumor rejection. In: AACR Special Conference: Tumor Immunology and Immunotherapy: A New Chapter.

Anczukow, O., Akerman, M., Clery, A., Wu, J., Shen, C., Shirole, N. H., Raimer, A., Sun, S., Jensen, M. A., Hua, Y., Allain, F. H., Krainer, A. R. (October 2015) SRSF1-Regulated Alternative Splicing in Breast Cancer. Mol Cell, 60 (1). pp. 105-17. ISSN 1097-4164 (Electronic)1097-2765 (Linking)

Anczukow, O., Krainer, A. R. (October 2015) The spliceosome, a potential Achilles heel of MYC-driven tumors. Genome Med, 7 (1). p. 107. ISSN 1756-994X (Electronic)1756-994X (Linking)

Anselmi, Francesca, Banerjee, Arkarup, Albeanu, Dinu F. (2015) Patterned Photostimulation in the Brain. In: New Techniques in Systems Neuroscience. Springer International Publishing, Cham, pp. 235-270. ISBN 978-3-319-12913-6

Anselmi, Francesca, Bandyopadhyay, Arka, Albeanu, Dinu (2015) New Techniques in Systems Neuroscience. In: New Techniques in Systems Neuroscience. Biological and Medical Physics, Biomedical Engineering . Springer International Publishing, pp. 235-270. ISBN 9783319129129

Ballouz, S., Verleyen, W., Gillis, J. (February 2015) Guidance for RNA-seq co-expression network construction and analysis: safety in numbers. Bioinformatics. ISSN 1367-4803

Banerjee, A., Marbach, F., Anselmi, F., Koh, M. S., Davis, M. B., Garcia da Silva, P., Delevich, K., Oyibo, H. K., Gupta, P., Li, B., Albeanu, D. F. (July 2015) An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb. Neuron, 87 (1). pp. 193-207. ISSN 0896-6273

Bartlett, M. E., Williams, S. K., Taylor, Z., DeBlasio, S., Goldshmidt, A., Hall, D. H., Schmidt, R. J., Jackson, D. P., Whipple, C. J. (November 2015) The Maize PI/GLO Ortholog Zmm16/sterile tassel silky ear1 Interacts with the Zygomorphy and Sex Determination Pathways in Flower Development. Plant Cell, 27 (11). pp. 3081-3098. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Baslan, T., Kendall, J., Ward, B., Cox, H., Leotta, A., Rodgers, L., Riggs, M., D'Italia, S., Sun, G., Yong, M., Miskimen, K., Gilmore, H., Saborowski, M., Dimitrova, N., Krasnitz, A., Harris, L., Wigler, M., Hicks, J. (May 2015) Optimizing sparse sequencing of single cells for highly multiplex copy number profiling. Genome Research, 25 (5). pp. 714-724. ISSN 1088-9051

Bauza, K., Atcheson, E., Malinauskas, T., Blagborough, A. M., Reyes-Sandoval, A. (March 2015) Tailoring a Combination Preerythrocytic Malaria Vaccine. Infect Immun, 84 (3). pp. 622-34. ISSN 1098-5522 (Electronic)0019-9567 (Linking)

Bergmann, J. H., Li, J., Eckersley-Maslin, M. A., Rigo, F., Freier, S. M., Spector, D. L. (September 2015) Regulation of the ESC transcriptome by nuclear long non-coding RNAs. Genome Res, 25 (9). pp. 1336-1346. ISSN 1549-5469 (Electronic)1088-9051 (Linking)

Beshel, J., Zhong, Y. (September 2015) Alterations in Brain-derived Leptin-homolog Unpaired 1 Lead to Obesity Phenotypes in Drosophila through Regulation of Food Odor Value Signaling. Chemical Senses, 40 (7). pp. 549-550. ISSN 0379-864X

Bhagwat, A. S., Vakoc, C. R. (September 2015) Targeting Transcription Factors in Cancer. Trends Cancer, 1 (1). pp. 53-65. ISSN 2405-8033 (Print)

Blank, H. M., Sheltzer, J. M., Meehl, C. M., Amon, A. (April 2015) Mitotic entry in the presence of DNA damage is a widespread property of aneuploidy in yeast. Mol Biol Cell, 26 (8). pp. 1440-51. ISSN 1939-4586 (Electronic)1059-1524 (Linking)

Boivin, Benoit, Tonks, Nicholas K (2015) PTP1B: mediating ROS signaling to silence genes. Molecular and Cellular Oncology, 2 (2). e975633. ISSN 2372-3556

Boj, Sylvia F, Hwang, Chang-Il, Baker, Lindsey A, Chio, Iok In Christine, Engle, Dannielle D, Corbo, Vincenzo, Jager, Myrthe, Ponz-Sarvise, Mariano, Tiriac, Hervé, Spector, Mona S, Gracanin, Ana, Oni, Tobiloba, Yu, Kenneth H, van Boxtel, Ruben, Huch, Meritxell, Rivera, Keith D, Wilson, John P, Feigin, Michael E, Öhlund, Daniel, Handly-Santana, Abram, Ardito-Abraham, Christine M, Ludwig, Michael, Elyada, Ela, Alagesan, Brinda, Biffi, Giulia, Yordanov, Georgi N, Delcuze, Bethany, Creighton, Brianna, Wright, Kevin, Park, Youngkyu, Morsink, Folkert H M., Molenaar, I.  Quintus, Borel Rinkes, Inne H, Cuppen, Edwin, Hao, Yuan, Jin, Ying, Nijman, Isaac J, Iacobuzio-Donahue, Christine, Leach, Steven D, Pappin, Darryl J, Hammell, Molly, Klimstra, David S, Basturk, Olca, Hruban, Ralph H, Offerhaus, George Johan, Vries, Robert G J., Clevers, Hans, Tuveson, David A (January 2015) Organoid Models of Human and Mouse Ductal Pancreatic Cancer. Cell, 160 (1-2). pp. 324-338. ISSN 0092-8674

Borges, F., Martienssen, R. A. (November 2015) The expanding world of small RNAs in plants. Nat Rev Mol Cell Biol, 16. pp. 727-741. ISSN 1471-0080 (Electronic)1471-0072 (Linking)

Borniger, J. C. (November 2015) Leaping into the unknown. Science, 350 (6262). p. 882. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Borniger, J. C., Gaudier-Diaz, M. M., Zhang, N., Nelson, R. J., DeVries, A. C. (July 2015) Cytotoxic chemotherapy increases sleep and sleep fragmentation in non-tumor-bearing mice. Brain Behav Immun, 47. pp. 218-27. ISSN 1090-2139 (Electronic)0889-1591 (Linking)

Bott, A. J., Peng, I. C., Fan, Y., Faubert, B., Zhao, L., Li, J., Neidler, S., Sun, Y., Jaber, N., Krokowski, D., Lu, W., Pan, J. A., Powers, S., Rabinowitz, J., Hatzoglou, M., Murphy, D. J., Jones, R., Wu, S., Girnun, G., Zong, W. X. (December 2015) Oncogenic Myc Induces Expression of Glutamine Synthetase through Promoter Demethylation. Cell Metab, 22 (6). pp. 1068-77. ISSN 1550-4131

Brill, Martin F., Meyer, Anneke, Roessler, Wolfgang (July 2015) It Takes Two – Coincidence coding within the dual olfactory pathway of the honeybee. Frontiers in Physiology, 6. p. 208. ISSN 1664-042X

Brohl, A. S., Li, L., Andikyan, V., Obican, S. G., Cioffi, A., Hao, K., Dudley, J. T., Ascher-Walsh, C., Kasarskis, A., Maki, R. G. (April 2015) Age-stratified risk of unexpected uterine sarcoma following surgery for presumed benign leiomyoma. Oncologist, 20 (4). pp. 433-9. ISSN 1549-490X (Electronic)1083-7159 (Linking)

Brunner, D., Kabitzke, P., He, D., Cox, K., Thiede, L., Hanania, T., Sabath, E., Alexandrov, V., Saxe, M., Peles, E., Mills, A., Spooren, W., Ghosh, A., Feliciano, P., Benedetti, M., Luo Clayton, A., Biemans, B. (August 2015) Comprehensive Analysis of the 16p11.2 Deletion and Null Cntnap2 Mouse Models of Autism Spectrum Disorder. PLoS One, 10 (8). e0134572. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Burke, S. L., Hammell, M., Ambros, V. (August 2015) Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS in Caenorhabditis elegans. Genetics, 200 (4). pp. 1201-18. ISSN 1943-2631 (Electronic)0016-6731 (Linking)

Cai, Na, Li, Yihan, Chang, Simon, Liang, Jieqin, Lin, Chongyun, Zhang, Xiufei, Liang, Lu, Hu, Jingchu, Chan, Wharton, Kendler, Kenneth S, Malinauskas, Tomas, Huang, Guo-Jen, Li, Qibin, Mott, Richard, Flint, Jonathan (December 2015) Genetic Control over mtDNA and Its Relationship to Major Depressive Disorder. Current Biology, 25 (24). pp. 3170-3177. ISSN 0960-9822

Campagna, L., Gronau, I., Silveira, L. F., Siepel, A., Lovette, I. J. (August 2015) Distinguishing Noise from Signal in Patterns of Genomic Divergence in a Highly Polymorphic Avian Radiation. Mol Ecol, 24 (16). pp. 4238-4251. ISSN 1365-294X (Electronic)0962-1083 (Linking)

Canto-Pastor, A., Molla-Morales, A., Ernst, E., Dahl, W., Zhai, J., Yan, Y., Meyers, B. C., Shanklin, J., Martienssen, R. (January 2015) Efficient transformation and artificial miRNA gene silencing in Lemna minor. Plant Biol (Stuttg), 17 (s1). pp. 59-65. ISSN 1435-8603

Carapua, E. F., Gemenetzidis, E., Feig, C., Tuveson, D., Kocher, H. (July 2015) Developing drug combinations to co-target pancreatic cancer and its supporting stroma. Cancer Research, 75 (Supple). B72. ISSN 0008-5472

Carvalho, C. M. B., Brennand, K., Yuan, B., Sebat, J., Malhotra, D., McCarthy, S., Rudolph, U., Levy, D., Lupski, J. R. (March 2015) Mosaicism May underlie Pleiotropic Psychiatric Phenotypes. Schizophrenia Bulletin, 41. S198-S199. ISSN 0586-76141745-1701

Cazakoff, BN, Shea, SD (January 2015) Simultaneous collection of in vivo functional and anatomical data from individual neurons in awake mice. In: Neural Tracing Methods. UNSPECIFIED, pp. 85-99.

Chae, H. G., Kepple, D., Koulakov, A. A., Murthy, V. N., Albeanu, D. F. (September 2015) Mosaic representation of odors in the output layer of the mouse olfactory bulb. Chemical Senses, 40 (7). p. 564. ISSN 0379-864X

Chakrabortty, S. K., Prakash, A., Nechooshtan, G., Hearn, S., Gingeras, T. R. (November 2015) Extracellular vesicle-mediated transfer of processed and functional RNY5 RNA. RNA, 21 (11). pp. 1966-1979. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Chakraborty, A. A., Scuoppo, C., Dey, S., Thomas, L. R., Lorey, S. L., Lowe, S. W., Tansey, W. P. (July 2015) A common functional consequence of tumor-derived mutations within c-MYC. Oncogene, 34. pp. 2406-2409. ISSN 0950-9232

Chandran, D., Scanlon, M. J., Ohtsu, K., Timmermans, M. C., Schnable, P. S., Wildermuth, M. C. (October 2015) Laser Microdissection-Mediated Isolation and In Vitro Transcriptional Amplification of Plant RNA. Curr Protoc Mol Biol, 112. 25A 3.1-25A 3.23. ISSN 1934-3647 (Electronic)1934-3647 (Linking)

Chandrasekaran, S., Navlakha, S., Audette, N. J., McCreary, D. D., Suhan, J., Bar-Joseph, Z., Barth, A. L. (December 2015) Unbiased, High-Throughput Electron Microscopy Analysis of Experience-Dependent Synaptic Changes in the Neocortex. J Neurosci, 35 (50). pp. 16450-62. ISSN 0270-6474

Cheng, J., Sedlazek, F., Altmuller, J., Nolte, A. W. (September 2015) Ectodysplasin signalling genes and phenotypic evolution in sculpins (Cottus). Proc Biol Sci, 282 (1815). ISSN 1471-2954 (Electronic)0962-8452 (Linking)

Cho, Hyejin, Herzka, Tali, Stahlhut, Carlos, Watrud, Kaitlin, Robinson, Brian D., Trotman, Lloyd C. (May 2015) Rapid in vivo validation of candidate drivers derived from the PTEN-mutant prostate metastasis genome. Methods, 77-78. pp. 197-204. ISSN 1046-2023

Church, D. M., Schneider, V. A., Steinberg, K. M., Schatz, M. C., Quinlan, A. R., Chin, C. S., Kitts, P. A., Aken, B., Marth, G. T., Hoffman, M. M., Herrero, J., Mendoza, M. L. Z., Durbin, R., Flicek, P. (January 2015) Extending reference assembly models. Genome Biology, 16. Article no. 13. ISSN 1465-6906

Churchland, Anne, Lisberger, Stephen (June 2015) Contributions from different model organisms to brain research. Neuroscience, 296. pp. 1-2. ISSN 0306-4522

Cifani, Paolo, Kirik, Ufuk, Waldemarson, Sofia, James, Peter (July 2015) Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors. Journal of Proteome Research, 14 (7). pp. 2819-2827. ISSN 1535-3893

Cifra, A., Lowe, S.W (November 2015) Exploring cell apoptosis and senescence to understand and treat cancer: an interview with Scott Lowe. Dis Model Mech, 8 (11). pp. 1345-8. ISSN 1754-8411 (Electronic)1754-8403 (Linking)

Ciubotaru, M., Surleac, M. D., Metskas, L. A., Koo, P., Rhoades, E., Petrescu, A. J., Schatz, D. G. (January 2015) The architecture of the 12RSS in V(D)J recombination signal and synaptic complexes. Nucleic Acids Res, 43 (2). pp. 917-31. ISSN 0305-1048

Consortium, 1000 Genomes Project (September 2015) A global reference for human genetic variation. Nature, 526 (7571). pp. 68-74. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Crompton, J. G., Sukumar, M., Roychoudhuri, R., Clever, D., Gros, A., Eil, R. L., Tran, E., Hanada, K., Yu, Z., Palmer, D. C., Kerkar, S. P., Michalek, R. D., Upham, T., Leonardi, A., Acquavella, N., Wang, E., Marincola, F. M., Gattinoni, L., Muranski, P., Sundrud, M. S., Klebanoff, C. A., Rosenberg, S. A., Fearon, D. T., Restifo, N. P. (January 2015) Akt inhibition enhances expansion of potent tumor-specific lymphocytes with memory cell characteristics. Cancer Res, 75 (2). pp. 296-305. ISSN 0008-5472

Danko, C. G., Hyland, S. L., Core, L. J., Martins, A. L., Waters, C. T., Lee, H. W., Cheung, V. G., Kraus, W. L., Lis, J. T., Siepel, A. (May 2015) Identification of active transcriptional regulatory elements from GRO-seq data. Nat Methods, 12 (5). pp. 433-8. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

Das, P. P., Hendrix, D. A., Apostolou, E., Buchner, A. H., Canver, M. C., Beyaz, S., Ljuboja, D., Kuintzle, R., Kim, W., Karnik, R., Shao, Z., Xie, H., Xu, J., De Los Angeles, A., Zhang, Y., Choe, J., Jun, D. L., Shen, X., Gregory, R. I., Daley, G. Q., Meissner, A., Kellis, M., Hochedlinger, K., Kim, J., Orkin, S. H. (September 2015) PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells. Cell Rep, 12 (9). pp. 1456-70. ISSN 2211-1247 (Electronic)

Delevich, K., Tucciarone, J., Huang, Z. J., Li, B. (April 2015) The Mediodorsal Thalamus Drives Feedforward Inhibition in the Anterior Cingulate Cortex via Parvalbumin Interneurons. Journal of Neuroscience , 35 (14). pp. 5743-53. ISSN 0270-6474

Dequeant, M. L., Fagegaltier, D., Hu, Y., Spirohn, K., Simcox, A., Hannon, G. J., Perrimon, N. (October 2015) Discovery of progenitor cell signatures by time-series synexpression analysis during Drosophila embryonic cell immortalization. Proc Natl Acad Sci U S A, 112 (42). pp. 12974-12979. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Dhabaria, Avantika, Cifani, Paolo, Reed, Casie, Steen, Hanno, Kentsis, Alex (August 2015) A High-Efficiency Cellular Extraction System for Biological Proteomics. Journal of Proteome Research, 14 (8). pp. 3403-3408. ISSN 1535-3893

Dickson, M. A., D'Adamo, D. R., Keohan, M. L., D'Angelo, S. P., Carvajal, R. D., Gounder, M. M., Maki, R. G., Qin, L. X., Lefkowitz, R. A., McKennon, O. R., Hirst, C. M., Schwartz, G. K., Tap, W. D. (2015) Phase II Trial of Gemcitabine and Docetaxel with Bevacizumab in Soft Tissue Sarcoma. Sarcoma, 2015. p. 532478. ISSN 1357-714X (Print)1357-714X (Linking)

Dobin, A., Gingeras, T. R. (September 2015) Mapping RNA-seq Reads with STAR. Curr Protoc Bioinformatics, 51. 11.14.1-11.14.19. ISSN 1934-340X (Electronic)1934-3396 (Linking)

Doerfel, Max, Lyon, Gholson J. (August 2015) The biological functions of Naa10 – from amino-terminal acetylation to human disease. Gene, 567 (2). pp. 103-131. ISSN 0378-1119

Dong, J., Panchakshari, R. A., Zhang, T., Zhang, Y., Hu, J., Volpi, S. A., Meyers, R. M., Ho, Y. J., Du, Z., Robbiani, D. F., Meng, F., Gostissa, M., Nussenzweig, M. C., Manis, J. P., Alt, F. W. (September 2015) Orientation-specific joining of AID-initiated DNA breaks promotes antibody class switching. Nature, 525 (7567). pp. 134-9. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Dos Santos, C. O., Dolzhenko, E., Hodges, E., Smith, A. D., Hannon, G. J. (May 2015) An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland. Cell Reports. ISSN 2211-1247

Dos Santos, L. I., Galvao-Filho, B., de Faria, P. C., Junqueira, C., Dutra, M. S., Teixeira, S. M., Rodrigues, M. M., Ritter, G., Bannard, O., Fearon, D. T., Antonelli, L. R., Gazzinelli, R. T. (March 2015) Blockade of CTLA-4 promotes the development of effector CD8+ T lymphocytes and the therapeutic effect of vaccination with an attenuated protozoan expressing NY-ESO-1. Cancer Immunol Immunother, 64 (3). pp. 311-23. ISSN 0340-7004

Drozdoff, V., Fairbairn, D. (January 2015) Licensing Biotech Intellectual Property in University-Industry Partnerships. Cold Spring Harb Perspect Med, 5 (3). a021014. ISSN 2157-1422

Dubois, M., Van den Broeck, L., Claeys, H., Van Vlierberghe, K., Matsui, M., Inze, D. (September 2015) The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis. Plant Physiol, 169 (1). pp. 166-79. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Ellegood, J., Anagnostou, E., Babineau, B. A., Crawley, J. N., Lin, L., Genestine, M., DiCicco-Bloom, E., Lai, J. K., Foster, J. A., Penagarikano, O., Geschwind, D. H., Pacey, L. K., Hampson, D. R., Laliberte, C. L., Mills, A. A., Tam, E., Osborne, L. R., Kouser, M., Espinosa-Becerra, F., Xuan, Z., Powell, C. M., Raznahan, A., Robins, D. M., Nakai, N., Nakatani, J., Takumi, T., van Eede, M. C., Kerr, T. M., Muller, C., Blakely, R. D., Veenstra-VanderWeele, J., Henkelman, R. M., Lerch, J. P. (February 2015) 3D visualization of the regional differences. Mol Psychiatry, 20 (1). p. 1. ISSN 1359-4184

Ellegood, J., Anagnostou, E., Babineau, B. A., Crawley, J. N., Lin, L., Genestine, M., DiCicco-Bloom, E., Lai, J. K., Foster, J. A., Penagarikano, O., Geschwind, D. H., Pacey, L. K., Hampson, D. R., Laliberte, C. L., Mills, A. A., Tam, E., Osborne, L. R., Kouser, M., Espinosa-Becerra, F., Xuan, Z., Powell, C. M., Raznahan, A., Robins, D. M., Nakai, N., Nakatani, J., Takumi, T., van Eede, M. C., Kerr, T. M., Muller, C., Blakely, R. D., Veenstra-VanderWeele, J., Henkelman, R. M., Lerch, J. P. (February 2015) Clustering autism: using neuroanatomical differences in 26 mouse models to gain insight into the heterogeneity. Mol Psychiatry, 20 (1). pp. 118-125. ISSN 1359-4184

Engel, T. A., Chaisangmongkon, W., Freedman, D. J., Wang, X. J. (March 2015) Choice-correlated activity fluctuations underlie learning of neuronal category representation. Nat Commun, 6. p. 6454. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Enikolopov, G., Overstreet-Wadiche, L., Ge, S. (August 2015) Viral and Transgenic Reporters and Genetic Analysis of Adult Neurogenesis. Cold Spring Harb Perspect Biol, 7 (8). ISSN 1943-0264 (Electronic)

Erben, U., Pawlowski, N. N., Heimesaat, M. M., Loddenkemper, C., Doerfel, K., Spieckermann, S., Siegmund, B., Kuhl, A. A. (November 2015) Preventive Anti-CD2 Treatment does not Impair Parasite Control in a Murine Toxoplasmosis Model. Eur J Microbiol Immunol (Bp), 5 (4). pp. 306-15. ISSN 2062-509X (Print)2062-509X (Linking)

Espana-Agusti, J., Tuveson, D. A., Adams, D. J., Matakidou, A. (June 2015) A minimally invasive, lentiviral based method for the rapid and sustained genetic manipulation of renal tubules. Sci Rep, 5. p. 11061. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Eveno, Clarisse, Mojica, Kelly, Ady, Justin W, Thorek, Daniel LJ, Longo, Valerie, Belin, Laurence J, Gholami, Sepideh, Johnsen, Clark, Zanzonico, Pat, Chen, Nanhai, Yu, Tony, Szalay, Aladar A, Fong, Yuman (February 2015) Gene therapy using therapeutic and diagnostic recombinant oncolytic vaccinia virus GLV-1h153 for management of colorectal peritoneal carcinomatosis. Surgery, 157 (2). pp. 331-337. ISSN 0039-6060

Fan, G., Aleem, S., Yang, M., Miller, W. T., Tonks, N. K. (June 2015) Protein Tyrosine Phosphatase and Kinase Specificity in Regulation of SRC and BRK. Journal of Biological Chemistry, 290 (26). pp. 15934-15947. ISSN 0021-9258

Fan, G., Wrzeszczynski, K. O., Fu, C., Su, G., Pappin, D. J., Lucito, R., Tonks, N. K. (February 2015) A quantitative proteomics-based signature of platinum sensitivity in ovarian cancer cell lines. Biochem J, 465 (3). pp. 433-42. ISSN 0264-6021

Fang, Han, Lyon, Gholson J. (February 2015) Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation. Journal Club . (Unpublished)

Franchin, Cinzia, Cesaro, Luca, Salvi, Mauro, Millioni, Renato, Iori, Elisabetta, Cifani, Paolo, James, Peter, Arrigoni, Giorgio, Pinna, Lorenzo (June 2015) Quantitative analysis of a phosphoproteome readily altered by the protein kinase CK2 inhibitor quinalizarin in HEK-293T cells. BBA: Proteins and Proteomics, 1854 (6). pp. 609-623. ISSN 1570-9639

Fuda, N. J., Guertin, M. J., Sharma, S., Danko, C. G., Martins, A. L., Siepel, A., Lis, J. T. (March 2015) GAGA Factor Maintains Nucleosome-Free Regions and Has a Role in RNA Polymerase II Recruitment to Promoters. Plos Genetics, 11 (3). e1005108. ISSN 1553-7390

Gampe, K., Stefani, J., Hammer, K., Brendel, P., Potzsch, A., Enikolopov, G., Enjyoji, K., Acker-Palmer, A., Robson, S. C., Zimmermann, H. (January 2015) NTPDase2 and Purinergic Signaling Control Progenitor Cell Proliferation in Neurogenic Niches of the Adult Mouse Brain. Stem Cells, 33 (1). pp. 253-64. ISSN 1066-5099

Garvin, T., Aboukhalil, R., Kendall, J., Baslan, T., Atwal, G. S., Hicks, J., Wigler, M., Schatz, M. C. (November 2015) Interactive analysis and assessment of single-cell copy-number variations. Nat Methods, 12. pp. 1058-1060. ISSN 1548-7105 (Electronic)1548-7091 (Linking) (Public Dataset)

Garvin, Tyler, Aboukhalil, Robert, Kendall, Jude, Baslan, Timour, Atwal, Gurinder S, Hicks, James, Wigler, Michael, Schatz, Michael (2015) Interactive analysis and quality assessment of single-cell copy-number variations. Nature Methods, 12. pp. 1058-1060. ISSN 15487091 (ISSN)

Gholami, Sepideh, Janson, Lucas, Worhunsky, David J, Tran, Thuy B, Squires, Malcolm Hart, Jin, Linda X, Spolverato, Gaya, Votanopoulos, Konstantinos I, Schmidt, Carl, Weber, Sharon M, Bloomston, Mark, Cho, Clifford S, Levine, Edward A, Fields, Ryan C, Pawlik, Timothy M, Maithel, Shishir K, Efron, Bradley, Norton, Jeffrey A, Poultsides, George A (August 2015) Number of Lymph Nodes Removed and Survival after Gastric Cancer Resection: An Analysis from the US Gastric Cancer Collaborative. Journal of the American College of Surgeons, 221 (2). pp. 291-299. ISSN 1072-7515

Giber, K., Diana, M. A., V, M. Plattner, Dugue, G. P., Bokor, H., Rousseau, C. V., Magloczky, Z., Havas, L., Hangya, B., Wildner, H., Zeilhofer, H. U., Dieudonne, S., Acsady, L. (February 2015) A subcortical inhibitory signal for behavioral arrest in the thalamus. Nature Neuroscience, 18. pp. 562-568. ISSN 1097-6256

Gill, A. B., Anandappa, G., Patterson, A. J., Priest, A. N., Graves, M. J., Janowitz, T., Jodrell, D. I., Eisen, T., Lomas, D. J. (February 2015) The use of error-category mapping in pharmacokinetic model analysis of dynamic contrast-enhanced MRI data. Magn Reson Imaging, 33 (2). pp. 246-51. ISSN 0730-725x

Gimenez, T. L., Lorenc, M., Jaramillo, S. (August 2015) Adaptive categorization of sound frequency does not require the auditory cortex in rats. J Neurophysiol, 114 (2). pp. 1137-1145. ISSN 1522-1598 (Electronic)0022-3077 (Linking)

Goh, W. S., Falciatori, I., Tam, O. H., Burgess, R., Meikar, O., Kotaja, N., Hammell, M., Hannon, G. J. (May 2015) piRNA-directed cleavage of meiotic transcripts regulates spermatogenesis. Genes Dev, 29 (10). pp. 1032-44. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Goodwin, S., Gade, A. M., Byrom, M., Herrera, B., Spears, C., Anslyn, E. V., Ellington, A. D. (March 2015) Next-Generation Sequencing as Input for Chemometrics in Differential Sensing Routines. Angew Chem Int Ed Engl, 54 (21). pp. 6339-6342. ISSN 1433-7851

Goodwin, S., Gurtowski, J., Ethe-Sayers, S., Deshpande, P., Schatz, M. C., McCombie, W. R. (November 2015) Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome. Genome Res, 25 (11). pp. 1750-1756. ISSN 1088-9051

Green, E. D., Watson, J. D., Collins, F. S. (September 2015) Human Genome Project: Twenty-five years of big biology. Nature, 526 (7571). pp. 29-31. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Grover, M. P., Ballouz, S., Mohanasundaram, K. A., George, R. A., Goscinski, A., Crowley, T. M., Sherman, C. D., Wouters, M. A. (May 2015) Novel therapeutics for coronary artery disease from genome-wide association study data. BMC Med Genomics, 8 (Suppl ). S1. ISSN 1755-8794 (Electronic)1755-8794 (Linking)

Gruene, T. M., Flick, K., Stefano, A., Shea, S. D., Shansky, R. M. (November 2015) Sexually divergent expression of active and passive conditioned fear responses in rats. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)

Gulko, B., Hubisz, M. J., Gronau, I., Siepel, A. (March 2015) A method for calculating probabilities of fitness consequences for point mutations across the human genome. Nature Genetics, 47 (3). pp. 276-283. ISSN 1061-4036

Guo, Y., Ding, X., Shen, Y., Lyon, G. J., Wang, K. (September 2015) SeqMule: automated pipeline for analysis of human exome/genome sequencing data. Sci Rep, 5. p. 14283. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Guo, Ya, Xu, Quan, Canzio, Daniele, Shou, Jia, Li, Jinhuan, Gorkin, David U, Jung, Inkyung, Wu, Haiyang, Zhai, Yanan, Tang, Yuanxiao, Lu, Yichao, Wu, Yonghu, Jia, Zhilian, Li, Wei, Zhang, Michael Q, Ren, Bing, Krainer, Adrian R, Maniatis, Tom, Wu, Qiang (2015) CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function. Cell, 162 (4). pp. 900-910. ISSN 0092-8674

Gupta, P., Albeanu, D. F., Bhalla, U. S. (January 2015) Olfactory bulb coding of odors, mixtures and sniffs is a linear sum of odor time profiles. Nature Neuroscience, 18. pp. 272-281. ISSN 1097-6256

Hangya, Balázs, Kepecs, Adam (June 2015) Vision: How to Train Visual Cortex to Predict Reward Time. Current Biology, 25 (12). R490-R492. ISSN 0960-9822

Hangya, Balázs, Ranade, Sachin P, Lorenc, Maja, Kepecs, Adam (August 2015) Central Cholinergic Neurons Are Rapidly Recruited by Reinforcement Feedback. Cell, 162 (5). pp. 1155-1168. ISSN 0092-8674

He, M., Person, T. N., Hebbring, S. J., Heinzen, E., Ye, Z., Schrodi, S. J., McPherson, E. W., Lin, S. M., Peissig, P. L., Brilliant, M. H., O'Rawe, J., Robison, R. J., Lyon, G. J., Wang, K. (January 2015) SeqHBase: a big data toolset for family based sequencing data analysis. Journal of Medical Genetics, 52 (4). pp. 282-288. ISSN 0022-2593

Hige, T., Aso, Y., Rubin, G. M., Turner, G. C. (September 2015) Plasticity-driven individualization of olfactory coding in mushroom body output neurons. Nature, 526 (7572). pp. 258-262. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Hige, Toshihide, Aso, Yoshinori, Modi, Mehrab N, Rubin, Gerald M, Turner, Glenn C (December 2015) Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila. Neuron, 88 (5). pp. 985-998. ISSN 0896-6273

Hige, Toshihide, Turner, Glenn (April 2015) Learning: The Good, the Bad, and the Fly. Neuron, 86 (2). pp. 343-345. ISSN 0896-6273

Hirschtritt, M. E., Lee, P. C., Pauls, D. L., Dion, Y., Grados, M. A., Illmann, C., King, R. A., Sandor, P., McMahon, W. M., Lyon, G. J., Cath, D. C., Kurlan, R., Robertson, M. M., Osiecki, L., Scharf, J. M., Mathews, C. A. (April 2015) Lifetime Prevalence, Age of Risk, and Genetic Relationships of Comorbid Psychiatric Disorders in Tourette Syndrome. JAMA Psychiatry, 72 (4). p. 325. ISSN 2168-622x

Hirschtritt, ME, Lee, PC, Pauls, DL, Dion, Yves, Grados, MA, Illmann, C, King, RA, Sandor, P., McMahon, W. M., Lyon, Gholson J., Cath, Danielle C., Kurlan, Roger, Robertson, M. M., Osiecki, L., Scharf, Jeremiah M., Matthews, Carol A. (February 2015) Lifetime Prevalence, Age of Risk, and Etiology of Comorbid Psychiatric Disorders in Tourette Syndrome. Tourette Syndrome Association International Consortium for Genetics.

Hogan, Megan S, Parfitt, David-Emlyn, Zepeda-Mendoza, Cinthya J, Shen, Michael M, Spector, David L (March 2015) Transient Pairing of Homologous Oct4 Alleles Accompanies the Onset of Embryonic Stem Cell Differentiation. Cell Stem Cell, 16 (3). pp. 275-288. ISSN 1934-5909

Homsy, J., Zaidi, S., Shen, Y., Ware, J. S., Samocha, K. E., Karczewski, K. J., DePalma, S. R., McKean, D., Wakimoto, H., Gorham, J., Jin, S. C., Deanfield, J., Giardini, A., Porter G.A, Jr., Kim, R., Bilguvar, K., López-Giráldez, F., Tikhonova, I., Mane, S., Romano-Adesman, A., Qi, H., Vardarajan, B., Ma, L., Daly, M., Roberts, A. E., Russell, M. W., Mital, S., Newburger, J. W., Gaynor, J. W., Breitbart, R. E., Iossifov, I., Ronemus, M., Sanders, S. J., Kaltman, J. R., Seidman, J. G., Brueckner, M., Gelb, B. D., Goldmuntz, E., Lifton, R. P., Seidman, C. E., Chung, W. K. (December 2015) De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies. Science, 350 (6265). pp. 1262-1266. ISSN 00368075

Hopkins, K. C., Tartell, M. A., Herrmann, C., Hackett, B. A., Taschuk, F., Panda, D., Menghani, S. V., Sabin, L. R., Cherry, S. (June 2015) Virus-induced translational arrest through 4EBP1/2-dependent decay of 5'-TOP mRNAs restricts viral infection. Proc Natl Acad Sci U S A, 112 (22). E2920-9. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Hu, Y, Wu, Q, Sprague, SA, Park, J, Oh, M, Rajashekar, CB, Koiwa, H, Nakata, PA, Cheng, N, Hirschi, KD, White, FF, Park, S (November 2015) Tomato expressing Arabidopsis glutaredoxin gene AtGRXS17 confers tolerance to chilling stress via modulating cold responsive components. Horticulture Research, 2 (1). ISSN 2052-7276

Hua, Y., Liu, Y. H., Sahashi, K., Rigo, F., Bennett, C. F., Krainer, A. R. (January 2015) Motor neuron cell-nonautonomous rescue of spinal muscular atrophy phenotypes in mild and severe transgenic mouse models. Genes Dev, 29 (3). pp. 288-297. ISSN 0890-9369

Huang, Z. J., Luo, L. (October 2015) NEUROSCIENCE. It takes the world to understand the brain. Science, 350 (6256). pp. 42-4. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Hurst, Laurence D, Ghanbarian, Avazeh T, Forrest, Alistair RR, FANTOM consortium, Huminiecki, Lukasz (December 2015) The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome. PLoS Biology, 13 (12). e1002315. ISSN 1544-9173

Husbands, A. Y., Benkovics, A. H., Nogueira, F. T., Lodha, M., Timmermans, M. C. (December 2015) The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 27 (12). pp. 3321-3335. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Iossifov, I., Levy, D., Allen, J., Ye, K., Ronemus, M., Lee, Y. H., Yamrom, B., Wigler, M. (September 2015) Low load for disruptive mutations in autism genes and their biased transmission. Proc Natl Acad Sci U S A. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Ip, C. L., Loose, M., Tyson, J. R., de Cesare, M., Brown, B. L., Jain, M., Leggett, R. M., Eccles, D. A., Zalunin, V., Urban, J. M., Piazza, P., Bowden, R. J., Paten, B., Mwaigwisya, S., Batty, E. M., Simpson, J. T., Snutch, T. P., Birney, E., Buck, D., Goodwin, S., Jansen, H. J., O'Grady, J., Olsen, H. E. (October 2015) MinION Analysis and Reference Consortium: Phase 1 data release and analysis. F1000Res, 4. p. 1075. ISSN 2046-1402 (Electronic)2046-1402 (Linking)

Ipsaro, J. J., Joshua-Tor, L. (January 2015) From guide to target: molecular insights into eukaryotic RNA-interference machinery. Nat Struct Mol Biol, 22 (1). pp. 20-28. ISSN 1545-9985 (Public Dataset)

Jackson, D. (March 2015) Plasmodesmata spread their influence. F1000Prime Reports, 7. Article number 25. ISSN 20517599

Janowitz, T., Welsh, S., Warren, A. Y., Robson, J., Thomas, B., Shaw, A., Ainsworth, N. L., Neal, D. E., Mazhar, D. (October 2015) Prostatic relapse of an undifferentiated teratoma 24 years after orchidectomy. BMC Res Notes, 8. p. 524. ISSN 1756-0500

Jayaprakash, A. D., Benson, E. K., Gone, S., Liang, R., Shim, J., Lambertini, L., Toloue, M. M., Wigler, M., Aaronson, S. A., Sachidanandam, R. (February 2015) Stable heteroplasmy at the single-cell level is facilitated by intercellular exchange of mtDNA. Nucleic Acids Research, 43 (4). pp. 2177-2187. ISSN 0305-1048

Jenkinson, C., Elliott, V. L., Evans, A., Oldfield, L., Timms, J. F., Gentry-Maharaj, A., Menon, U., Cox, T., Campbell, F., Sutton, R., Pereira, S. P., Tuveson, D. A., Greenhalf, W., Neoptolemos, J. P., Costello, E. (November 2015) Decreased Serum Thrombospondin-1 Levels in Pancreatic Ductal Adenocarcinoma Patients: An Early Indicator of Cancer or Diabetes Development? Pancreas, 44 (8). p. 1383. ISSN 0885-3177

Jenkinson, Claire, Elliott, Victoria, Evans, Anthony, Oldfield, Lucy, O'Brien, Darragh, Apostolidou, Sophia, Gentry-Maharaj, Aleksandra, Fourkala, Evangelia- O., Jacobs, Ian, Menon, Usha, Cox, Trevor, Campbell, Fiona, Tuveson, David, Greenhalf, William, Sutton, Robert, Pereira, Stephen, Timms, John, Neoptolemos, John, Costello, Eithne (June 2015) Decreased serum thrombospondin-1 levels in pancreatic ductal adenocarcinoma patients: an early indicator of disease or diabetes mellitus development? Pancreatology, 15 (3, Sup). S28. ISSN 1424-3903

Jiménez-Barrón, Laura T., O'Rawe, Jason A., Wu, Yiyang, Yoon, Margaret, Fang, Han, Iossifov, Ivan, Lyon, Gholson J. (October 2015) Genome-wide variant analysis of simplex autism families with an integrative clinical-bioinformatics pipeline. Molecular Case Studies, 1 (1).

Jin, Y., Tam, O. H., Paniagua, E., Hammell, M. (November 2015) TEtranscripts: A package for including transposable elements in differential expression analysis of RNA-seq datasets. Bioinformatics, 31 (22). pp. 3593-3599. ISSN 1367-4811 (Electronic)1367-4803 (Linking)

Joyce, J. A., Fearon, D. T. (April 2015) T cell exclusion, immune privilege, and the tumor microenvironment. Science, 348 (6230). pp. 74-80. ISSN 0036-8075

Kaiserli, E., Paldi, K., O'Donnell, L., Batalov, O., Pedmale, U. V., Nusinow, D. A., Kay, S. A., Chory, J. (November 2015) Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. Dev Cell, 35 (3). pp. 311-21. ISSN 1534-5807

Kanitscheider, I., Brown, A., Pouget, A., Churchland, A. K. (June 2015) Multisensory decisions provide support for probabilistic number representations. Journal of Neurophysiology, 113 (10). pp. 3490-3498. ISSN 00223077

Kara, N., Hossain, M., Prasanth, S. G., Stillman, B. (May 2015) Orc1 Binding to Mitotic Chromosomes Precedes Spatial Patterning During G1 Phase and Assembly of the Origin Recognition Complex in Human Cells. J Biol Chem, 290 (19). pp. 12355-12369. ISSN 0021-9258

Karakas, Erkan, Regan, Michael C., Furukawa, Hiro (June 2015) Emerging structural insights into the function of ionotropic glutamate receptors. Trends in Biochemical Sciences, 40 (6). pp. 328-337. ISSN 0968-0004

Kaufman, M. T., Churchland, M. M., Ryu, S. I., Shenoy, K. V. (May 2015) Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex. Elife, 4. e04677. ISSN 2050-084X (Electronic)2050-084X (Linking)

Ke, J., Zhao, Z., Hong, S. H., Bai, S., He, Z., Malik, F., Xu, J., Zhou, L., Chen, W., Martin-Trevino, R., Wu, X., Lan, P., Yi, Y., Ginestier, C., Ibarra, I., Shang, L., McDermott, S., Luther, T., Clouthier, S. G., Wicha, M. S., Liu, S. (January 2015) Role of microRNA221 in regulating normal mammary epithelial hierarchy and breast cancer stem-like cells. Oncotarget, 6 (6). p. 3709. ISSN 1949-2553

Kebschull, J. M., Zador, A. M. (December 2015) Sources of PCR-induced distortions in high-throughput sequencing data sets. Nucleic Acids Res, 43 (21). e143. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Kepecs, A., Mensh, B. D. (December 2015) Emotor control: computations underlying bodily resource allocation, emotions, and confidence. Dialogues Clin Neurosci, 17 (4). pp. 391-401. ISSN 1958-5969 (Electronic)1294-8322 (Linking)

Kim, Yongsoo, Venkataraju, Kannan Umadevi, Pradhan, Kith, Mende, Carolin, Taranda, Julian, Turaga, Srinivas C, Arganda-Carreras, Ignacio, Ng, Lydia, Hawrylycz, Michael J, Rockland, Kathleen S, Seung, H.  Sebastian, Osten, Pavel (January 2015) Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse. Cell Reports, 10 (2). pp. 292-305. ISSN 2211-1247

Kinney, J. B. (September 2015) Unification of field theory and maximum entropy methods for learning probability densities. Physical Review E, 92 (3). ISSN 1539-3755

Kirschner, K., Samarajiwa, S. A., Cairns, J. M., Menon, S., Perez-Mancera, P. A., Tomimatsu, K., Bermejo-Rodriguez, C., Ito, Y., Chandra, T., Narita, M., Lyons, S. K., Lynch, A. G., Kimura, H., Ohbayashi, T., Tavare, S., Narita, M. (March 2015) Phenotype specific analyses reveal distinct regulatory mechanism for chronically activated p53. PLoS Genet, 11 (3). e1005053. ISSN 1553-7390

Klingler, S., Guo, B., Yao, J., Yan, H., Zhang, L., Vaseva, A. V., Chen, S., Canoll, P., Horner, J. W., Wang, Y. A., Paik, J. H., Ying, H., Zheng, H. (May 2015) Development of resistance to EGFR targeted therapy in malignant glioma can occur through EGFR dependent and independent mechanisms. Cancer Research, 75 (10). pp. 2109-2119. ISSN 0008-5472

Koo, P. K., Weitzman, M., Sabanaygam, C. R., van Golen, K. L., Mochrie, S. G. (October 2015) Extracting Diffusive States of Rho GTPase in Live Cells: Towards In Vivo Biochemistry. PLoS Comput Biol, 11 (10). e1004297. ISSN 1553-734x

Krainer, A. R. (April 2015) Splicing: still so much to learn. RNA, 21 (4). pp. 500-1. ISSN 1355-8382

Krishnakumar, V., Choi, Y., Beck, E., Wu, Q., Luo, A., Sylvester, A., Jackson, D., Chan, A. P. (November 2015) A Maize Database Resource that Captures Tissue-Specific and Subcellular-Localized Gene Expression, via Fluorescent Tags and Confocal Imaging. (Maize Cell Genomics Database). Plant & cell physiology, 56 (1). e12. ISSN 0032-0781

Krishnan, K., Wang, B. S., Lu, J., Wang, L., Maffei, A., Cang, J., Huang, Z. J. (August 2015) MeCP2 regulates the timing of critical period plasticity that shapes functional connectivity in primary visual cortex. Proc Natl Acad Sci U S A, 112 (34). E4782-E4791. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Krishnan, N., Krishnan, K., Connors, C. R., Choy, M. S., Page, R., Peti, W., Van Aelst, L., Shea, S. D., Tonks, N. K. (July 2015) PTP1B inhibition suggests a therapeutic strategy for Rett syndrome. J Clin Invest, 125 (8). pp. 3163-3177. ISSN 1558-8238 (Electronic)0021-9738 (Linking)

Krishnan, Navasona, Tonks, Nicholas K. (August 2015) Anxious moments for the protein tyrosine phosphatase PTP1B. Trends in Neurosciences, 38 (8). pp. 462-465. ISSN 0166-2236

Kuhn, C. D., Wilusz, J. E., Zheng, Y., Beal, P. A., Joshua-Tor, L. (January 2015) On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme. Cell, 160 (4). pp. 644-658. ISSN 0092-8674 (Public Dataset)

Kuhn, C. D., Wilusz, J. E., Zheng, Y., Beal, P. A., Joshua-Tor, L. (July 2015) On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme. Febs Journal, 282 (Supple). p. 37. ISSN 1742-464X

Kumaran, RI, Li, J, Dynan, WS, Porteus, MH, Spector, DL (2015) Analysis of DNA repair pathway choice upon zinc finger nuclease induced double-strand breaks. In: UNSPECIFIED.

Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., Ziller, M. J., Amin, V., Whitaker, J. W., Schultz, M. D., Ward, L. D., Sarkar, A., Quon, G., Sandstrom, R. S., Eaton, M. L., Wu, Y. C., Pfenning, A. R., Wang, X., Claussnitzer, M., Liu, Y., Coarfa, C., Harris, R. A., Shoresh, N., Epstein, C. B., Gjoneska, E., Leung, D., Xie, W., Hawkins, R. D., Lister, R., Hong, C., Gascard, P., Mungall, A. J., Moore, R., Chuah, E., Tam, A., Canfield, T. K., Hansen, R. S., Kaul, R., Sabo, P. J., Bansal, M. S., Carles, A., Dixon, J. R., Farh, K. H., Feizi, S., Karlic, R., Kim, A. R., Kulkarni, A., Li, D., Lowdon, R., Elliott, G., Mercer, T. R., Neph, S. J., Onuchic, V., Polak, P., Rajagopal, N., Ray, P., Sallari, R. C., Siebenthall, K. T., Sinnott-Armstrong, N. A., Stevens, M., Thurman, R. E., Wu, J., Zhang, B., Zhou, X., Beaudet, A. E., Boyer, L. A., De Jager, P. L., Farnham, P. J., Fisher, S. J., Haussler, D., Jones, S. J., Li, W., Marra, M. A., McManus, M. T., Sunyaev, S., Thomson, J. A., Tlsty, T. D., Tsai, L. H., Wang, W., Waterland, R. A., Zhang, M. Q., Chadwick, L. H., Bernstein, B. E., Costello, J. F., Ecker, J. R., Hirst, M., Meissner, A., Milosavljevic, A., Ren, B., Stamatoyannopoulos, J. A., Wang, T., Kellis, M. (February 2015) Integrative analysis of 111 reference human epigenomes. Nature, 518 (7539). pp. 317-30. ISSN 0028-0836

Kusenda, M., Vacic, V., Malhotra, D., Rodgers, L., Pavon, K., Meth, J., Kumar, R. A., Christian, S. L., Peeters, H., Cho, S. S., Addington, A., Rapoport, J. L., Sebat, J. (December 2015) The Influence of Microdeletions and Microduplications of 16p11.2 on Global Transcription Profiles. J Child Neurol, 30 (14). pp. 1947-1953. ISSN 1708-8283 (Electronic)0883-0738 (Linking)

Law, M., Childs, K. L., Campbell, M. S., Stein, J. C., Olson, A. J., Holt, C., Panchy, N., Lei, J., Jiao, D., Andorf, C. M., Lawrence, C. J., Ware, D., Shiu, S. H., Sun, Y., Jiang, N., Yandell, M. (January 2015) Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes. Plant Physiol, 167 (1). pp. 25-39. ISSN 0032-0889

Lazarus, M. S., Krishnan, K., Huang, Z. J. (May 2015) GAD67 Deficiency in Parvalbumin Interneurons Produces Deficits in Inhibitory Transmission and Network Disinhibition in Mouse Prefrontal Cortex. Cerebral Cortex, 25 (5). pp. 1290-1296. ISSN 1047-3211

Lee, A. M., Tai, L. H., Zador, A., Wilbrecht, L. (June 2015) Between the primate and 'reptilian' brain: Rodent models demonstrate the role of corticostriatal circuits in decision making. Neuroscience, 296. pp. 66-74. ISSN 0306-4522

Lee, C. K., Goldstein, D., Gibbs, E., Joensuu, H., Zalcberg, J., Verweij, J., Casali, P. G., Maki, R. G., Cioffi, A., McArthur, G., Lord, S. J., Yip, D., Kanjanapan, Y., Rutkowski, P. (May 2015) Development and validation of prognostic nomograms for metastatic gastrointestinal stromal tumour treated with imatinib. Eur J Cancer, 51 (7). pp. 852-60. ISSN 1879-0852 (Electronic)0959-8049 (Linking)

Lee, I. S., Carvalho, C. M., Douvaras, P., Ho, S. M., Hartley, B. J., Zuccherato, L. W., Ladran, I. G., Siegel, A. J., McCarthy, S., Malhotra, D., Sebat, J., Rapoport, J., Fossati, V., Lupski, J. R., Levy, D. L., Brennand, K. J. (June 2015) Characterization of molecular and cellular phenotypes associated with a heterozygous deletion using patient-derived hiPSC neural cells. NPJ Schizophr, 1. ISSN 2334-265X (Print)2334-265X (Linking)

Lee, J. H., Daugharthy, E. R., Scheiman, J., Kalhor, R., Ferrante, T. C., Terry, R., Turczyk, B. M., Yang, J. L., Lee, H. S., Aach, J., Zhang, K., Church, G. M. (March 2015) Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues. Nat Protoc, 10 (3). pp. 442-58. ISSN 1750-2799

Leiboff, S., Li, X., Hu, H. C., Todt, N., Yang, J., Li, X., Yu, X., Muehlbauer, G. J., Timmermans, M. C., Yu, J., Schnable, P. S., Scanlon, M. J. (November 2015) Genetic control of morphometric diversity in the maize shoot apical meristem. Nat Commun, 6. p. 8974. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Levy, D., Coleman, M., Godfrey, L., Sebat, J., Ongur, D., Kaufman, M. J., McCarthy, S., Malhotra, D., Lewandowski, K., Javitt, D., Waldstreicher, E., Vuckovic, A., Visscher, T., Kirchhoff, C., Coyle, J. T., Suckow, R., Rudolph, U., Bodkin, J. (March 2015) Successful Targeted Treatment of a Medically Actionable Mutation in Psychotic Disorders. Schizophrenia Bulletin, 41. S207-S207. ISSN 0586-7614

Li, J., Chanrion, M., Sawey, E., Wang, T., Chow, E., Tward, A., Su, Y., Xue, W., Lucito, R., Zender, L., Lowe, S. W., Bishop, J. M., Powers, S. (March 2015) Reciprocal Interaction of Wnt and RXR-alpha Pathways in Hepatocyte Development and Hepatocellular Carcinoma. PLoS One, 10 (3). e0118480. ISSN 1932-6203

Li, Y., Mukherjee, I., Thum, K. E., Tanurdzic, M., Katari, M. S., Obertello, M., Edwards, M. B., McCombie, W. R., Martienssen, R. A., Coruzzi, G. M. (April 2015) The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology, 16 (1). p. 79. ISSN 1474-7596

Li, Siran, Stone, Howard A, Murphy, Coleen T (January 2015) A microfluidic device and automatic counting system for the study of C. elegans reproductive aging. Lab on a Chip: miniaturisation for chemistry, physics, biology, materials science and bioengineering, 15 (2). pp. 524-531. ISSN 1473-0197

Lin, S. C., Brown, R. E., Hussain Shuler, M. G., Petersen, C. C., Kepecs, A. (October 2015) Optogenetic Dissection of the Basal Forebrain Neuromodulatory Control of Cortical Activation, Plasticity, and Cognition. J Neurosci, 35 (41). pp. 13896-903. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Liseron-Monfils, Christophe, Ware, Doreen (December 2015) Revealing gene regulation and associations through biological networks. Current Plant Biology, 3-4. pp. 30-39. ISSN 2214-6628

Liu, H., Niu, Y., Gonzalez-Portilla, P. J., Zhou, H., Wang, L., Zuo, T., Qin, C., Tai, S., Jansen, C., Shen, Y., Lin, H., Lee, M., Ware, D., Zhang, Z., Lubberstedt, T., Pan, G. (December 2015) An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize. BMC Genomics, 16 (1). p. 1078. ISSN 1471-2164 (Electronic)1471-2164 (Linking)

Liu, J., Lee, H. J., Weitz, A. J., Fang, Z., Lin, P., Choy, M., Fisher, R., Pinskiy, V., Tolpygo, A., Mitra, P., Schiff, N., Lee, J. H. (December 2015) Frequency-selective control of cortical and subcortical networks by central thalamus. Elife, 4. e09215. ISSN 2050-084X (Electronic)2050-084X (Linking)

Loman, N., Goodwin, S., Jansen, H., Loose, M. (October 2015) A disruptive sequencer meets disruptive publishing. F1000Res, 4. p. 1074. ISSN 2046-1402 (Electronic)2046-1402 (Linking)

Lukey, M. J., Cerione, R. A. (August 2015) Rho GTPases. In: Encyclopedia of Cell Biology. Elsevier, pp. 731-740. ISBN 978-0-12-394796-3

Lyon, G. J. (May 2015) Discovery and genetic characterization of new neuropsychiatric syndromes from family-based studies. In: Cold Spring Harbor Laboratory: The Biology of Genomes Meeting, Cold Spring Harbor, NY. (Unpublished)

Lyon, G. J. (May 2015) New human genetic syndromes leading to the discovery of new biology. In: Cold Spring Harbor Laboratory: 80th CSHL Symposium on Quantitative Biology – 21st Century Genetics: Genes at Work, Cold Spring Harbor, NY. (Unpublished)

Lyon, G. J. (March 2015) Speaker, Rare Human Diseases as a Window into New Biology. In: Rare Human Diseases as a Window into New Biology, Lawrence, KS. (Unpublished)

Lyon, G. J. (February 2015) Speaker, Utah’s Inaugural Rare Disease Day Symposium. In: Utah’s Inaugural Rare Disease Day Symposium, Salt Lake City, UT. (Unpublished)

Lyon, G. J. (May 2015) Using next generation sequencing to discover new human genetic syndromes and reveal new biology. In: GTCbio: 5th Next Generation Sequencing Conference, Boston, MA. (Unpublished)

Lyon, G. J. (March 2015) Variants in TAF1 are associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. In: Cold Spring Harbor Laboratory: Wiring the Brain, Cold Spring Harbor, NY. (Unpublished)

Lyon, G. J. (April 2015) Variants in TAF1 are associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. In: 10th International Meeting on Copy Variants and Genes in Intellectual Disability and Autism, Troina, Italy. (Unpublished)

Lyon, Gholson J. (April 2015) Association of Protein Biogenesis Factors at the Yeast Ribosomal Tunnel Exit Is Affected by the Translational Status and Nascent Polypeptide Sequence. Journal Club. (Unpublished)

Lyon, Gholson J. (February 2015) Autoacetylation regulates differentially the roles of ARD1 variants in tumorigenesis. Journal Club. (Unpublished)

Lyon, Gholson J. (March 2015) Cut the Hype. Accuracy and Standards Come First. Frontline Genomics, 2. pp. 19-23.

Lyon, Gholson J. (February 2015) Different subcellular localizations and functions of human ARD1 variants. Journal Club . (Unpublished)

Lyon, Gholson J. (July 2015) Human genetic variation and the genotype-phenotype problem - part 1 of 2. In: Topical Talks: Talks of interest in the biomedical and life sciences. Henry Stewart Talks.

Lyon, Gholson J. (2015) Human genetic variation and the genotype-phenotype problem - part 2 of 2. [Video]

Lyon, Gholson J. (June 2015) (Hyper)tension release by N-terminal acetylation / Control of mammalian G protein signaling by N-terminal acetylation and the N-end rule pathway. Journal Club . (Unpublished)

Lyon, Gholson J. (February 2015) Massively parallel single-amino-acid mutagenesis. Journal Club. (Unpublished)

Lyon, Gholson J. (February 2015) The Molecular Basis for Histone H4- and H2A Specific Amino-Terminal Acetylation by NatD. Journal Club . (Unpublished)

Lyon, Gholson J. (February 2015) NAA10 controls osteoblast differentiation and bone formation as a feedback regulator of Runx2. Journal Club . (Unpublished)

Lyon, Gholson J. (September 2015) Ogden Syndrome and the role of Nα-acetylation in human health and disease. In: 2015 Symposium of National Creative Initiatives Center for Immune and Vascular Cell Network (NCIC-IVCN), Ewha Womans University, Seoul, Korea. (Unpublished)

Lyon, Gholson J. (September 2015) Optimized sequencing leading to new human genetic syndromes involving transcription, translation, and protein degradation. In: The 24th KOGO Annual Conference 2015 & The 10th Asian Epigenomics Meeting, The Korea Science and Technology Center, Seoul, Korea. (Unpublished)

Lyon, Gholson J. (September 2015) Optimized sequencing leading to new human genetic syndromes involving transcription, translation, and protein degradation. In: Seminar, Pohang University of Science and Technology (POSTECH), Pohang, South Korea. (Unpublished)

Lyon, Gholson J. (March 2015) An Organellar Na-Acetyltransferase, Naa60, Acetylates Cytosolic N Termini of Transmembrane Proteins and Maintains Goli Integrity. Journal Club. (Unpublished)

Lyon, Gholson J. (January 2015) A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress. Journal Club. (Unpublished)

Lyon, Gholson J. (January 2015) Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains. Journal Club. (Unpublished)

Lyon, Gholson J. (June 2015) Sporulation in the Budding Yeast Saccharomyces cerevisiae. Journal Club . (Unpublished)

Lyon, Gholson J. (February 2015) Translation inhibitors cause abnormalities in ribosome profiling experiments. Journal Club. (Unpublished)

Lyon, Gholson J. (September 2015) Variants in TAF1 are associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. In: 17th International Fragile X and Other Early-Onset Cognitive Disorders Workshop, Strasbourg, France. (Unpublished)

Lyon, Gholson J. (October 2015) Variants in TAF1 are associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. In: he American Society of Human Genetics (ASHG) 2015, Baltimore, MD. (Unpublished)

Lyon, Gholson J. (October 2015) A new intellectual disability syndrome. In: Seminar, Cold Spring Harbor Laboratory In-House Seminar Series, Cold Spring Harbor, NY. (Unpublished)

Lyon, Gholson J. (April 2015) The principle of antagonism ensures protein targeting specificity at the endoplasmic reticulum. Journal Club. (Unpublished)

Lyon, Gholson J., O'Rawe, Jason (July 2015) Human genetics and clinical aspects of neurodevelopmental disorders. In: The Genetics of Neurodevelopmental Disorders. Wiley, pp. 289-317.

Lyon, Gholson J. (June 2015) Genetic Complexity and Neuropsychiatric Disorders. In: Institute of Medical Genetics and Functional Genomics, Hosted by Svetlana Gorokhova, Marseille, France. (Unpublished)

Lyons, S. K. (May 2015) Imaging Mouse Models of Cancer. Cancer J, 21 (3). pp. 152-164. ISSN 1540-336X (Electronic)1528-9117 (Linking)

Lyons, S. K. (February 2015) The development and imaging of advanced cancer models. Journal of Nuclear Medicine, 56 (2). p. 25. ISSN 0161-5505

MacColl, Elisabeth, Therkelsen, Matthew D., Sherpa, Tshering, Ellerbrock, Hannah, Johnston, Lily A., Jariwala, Ravi, Chang, WeiShu, Gurtowski, James, Schatz, Michael C., Mozammal Hossain, M., Cassidy-Hanley, Donna M., Clark, Theodore G., Chang, Wei-Jen (May 2015) Molecular Genetic Diversity and Characterization of Conjugation Genes in the Fish Parasite Ichthyophthirius multifiliis. Molecular Phylogenetics and Evolution, 86. pp. 1-7. ISSN 1055-7903

Makaryus, R., Lee, H., Feng, T., Park, J. H., Nedergaard, M., Jacob, Z., Enikolopov, G., Benveniste, H. (September 2015) Brain Maturation in Neonatal Rodents Is Impeded by Sevoflurane Anesthesia. Anesthesiology, 123 (3). pp. 557-568. ISSN 1528-1175 (Electronic)0003-3022 (Linking)

Marinov, Georgi K, Wang, Jie, Handler, Dominik, Wold, Barbara J, Weng, Zhiping, Hannon, Gregory J, Aravin, Alexei A, Zamore, Phillip D, Brennecke, Julius, Toth, Katalin Fejes (March 2015) Pitfalls of Mapping High-Throughput Sequencing Data to Repetitive Sequences: Piwi’s Genomic Targets Still Not Identified. Developmental Cell, 32 (6). pp. 765-771. ISSN 1534-5807

Martienssen, R., Moazed, D. (August 2015) RNAi and Heterochromatin Assembly. Cold Spring Harb Perspect Biol, 7 (8). ISSN 1943-0264 (Electronic)

Martin, L., Cook, C., Matasci, N., Williams, J., Bastow, R. (2015) Data mining with iPlant: A meeting report from the 2013 GARNet workshop, Data mining with iPlant. Journal of Experimental Botany, 66 (1). pp. 1-6. ISSN 0022-0957

Matlashov, Mikhail E., Bogdanova, Yulia A., Ermakova, Galina V., Mishina, Natalia M., Ermakova, Yulia G., Nikitin, Evgeny S., Balaban, Pavel M., Okabe, Shigeo, Lukyanov, Sergey, Enikolopov, Grigori, Zaraisky, Andrey G., Belousov, Vsevolod V. (August 2015) Fluorescent ratiometric pH indicator SypHer2: applications in neuroscience and regenerative biology. Biochimica et Biophysica Acta (BBA) - General Subjects, 1850 (11). pp. 2318-2328. ISSN 0304-4165

Matthews, G. M., Mehdipour, P., Cluse, L. A., Falkenberg, K. J., Wang, E., Roth, M., Santoro, F., Vidacs, E., Stanley, K., House, C. M., Rusche, J. R., Vakoc, C. R., Zuber, J., Minucci, S., Johnstone, R. W. (November 2015) Functional-genetic dissection of HDAC dependencies in mouse lymphoid and myeloid malignancies. Blood, 126 (21). pp. 2392-2403. ISSN 1528-0020 (Electronic)0006-4971 (Linking)

McCandlish, D. M., Epstein, C. L., Plotkin, J. B. (February 2015) Formal properties of the probability of fixation: identities, inequalities and approximations. Theor Popul Biol, 99. pp. 98-113. ISSN 1096-0325 (Electronic)0040-5809 (Linking)

McCandlish, D. M., Otwinowski, J., Plotkin, J. B. (September 2015) Detecting epistasis from an ensemble of adapting populations. Evolution, 69 (9). pp. 2359-70. ISSN 1558-5646 (Electronic)0014-3820 (Linking)

Meacham, C. E., Lawton, L. N., Soto-Feliciano, Y. M., Pritchard, J. R., Joughin, B. A., Ehrenberger, T., Fenouille, N., Zuber, J., Williams, R. T., Young, R. A., Hemann, M. T. (March 2015) A genome-scale in vivo loss-of-function screen identifies Phf6 as a lineage-specific regulator of leukemia cell growth. Genes & Development, 29 (5). pp. 483-8. ISSN 0890-9369

Megjhani, M., Rey-Villamizar, N., Merouane, A., Lu, Y., Mukherjee, A., Trett, K., Chong, P., Harris, C., Shain, W., Roysam, B. (July 2015) Population-scale Three-dimensional Reconstruction and Quantitative Profiling of Microglia Arbors. Bioinformatics, 31 (13). pp. 2190-2198. ISSN 1367-4803

Menegas, W., Bergan, J. F., Ogawa, S. K., Isogai, Y., Umadevi Venkataraju, K., Osten, P., Uchida, N., Watabe-Uchida, M. (August 2015) Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)

Mesik, L., Ma, W. P., Li, L. Y., Ibrahim, L. A., Huang, Z. J., Zhang, L. I., Tao, H. W. (May 2015) Functional response properties of VIP-expressing inhibitory neurons in mouse visual and auditory cortex. Front Neural Circuits, 9. p. 22. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Ming, R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., Lyons, E., Wang, M. L., Chen, J., Biggers, E., Zhang, J., Huang, L., Zhang, L., Miao, W., Zhang, J., Ye, Z., Miao, C., Lin, Z., Wang, H., Zhou, H., Yim, W. C., Priest, H. D., Zheng, C., Woodhouse, M., Edger, P. P., Guyot, R., Guo, H. B., Guo, H., Zheng, G., Singh, R., Sharma, A., Min, X., Zheng, Y., Lee, H., Gurtowski, J., Sedlazeck, F. J., Harkess, A., McKain, M. R., Liao, Z., Fang, J., Liu, J., Zhang, X., Zhang, Q., Hu, W., Qin, Y., Wang, K., Chen, L. Y., Shirley, N., Lin, Y. R., Liu, L. Y., Hernandez, A. G., Wright, C. L., Bulone, V., Tuskan, G. A., Heath, K., Zee, F., Moore, P. H., Sunkar, R., Leebens-Mack, J. H., Mockler, T., Bennetzen, J. L., Freeling, M., Sankoff, D., Paterson, A. H., Zhu, X., Yang, X., Smith, J. A., Cushman, J. C., Paull, R. E., Yu, Q. (November 2015) The pineapple genome and the evolution of CAM photosynthesis. Nat Genet, 47. pp. 1435-1442. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Miyoshi, G., Young, A., Petros, T., Karayannis, T., McKenzie Chang, M., Lavado, A., Iwano, T., Nakajima, M., Taniguchi, H., Huang, Z. J., Heintz, N., Oliver, G., Matsuzaki, F., Machold, R. P., Fishell, G. (September 2015) Prox1 Regulates the Subtype-Specific Development of Caudal Ganglionic Eminence-Derived GABAergic Cortical Interneurons. J Neurosci, 35 (37). pp. 12869-89. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Montal, E. D., Dewi, R., Bhalla, K., Ou, L., Hwang, B. J., Ropell, A. E., Gordon, C., Liu, W. J., DeBerardinis, R. J., Sudderth, J., Twaddel, W., Boros, L. G., Shroyer, K. R., Duraisamy, S., Drapkin, R., Powers, R. S., Rohde, J. M., Boxer, M. B., Wong, K. K., Girnun, G. D. (November 2015) PEPCK Coordinates the Regulation of Central Carbon Metabolism to Promote Cancer Cell Growth. Mol Cell, 60 (4). pp. 571-83. ISSN 1097-2765

Moskal, D., Tonks, N. K., Lucito, R. (August 2015) Alteration of the protein tyrosine phosphatome in cancer. Cancer Research, 75 (Supple). Abstract 1933. ISSN 0008-5472

Mukhopadhyay, Swagatam, Wigler, Michael, Levy, Dan (March 2015) Simple genetic models for autism spectrum disorder. bioRxiv. 017301.

Naguib, Adam, Bencze, Gyula, Cho, Hyejin, Zheng, Wu, Tocilj, Ante, Elkayam, Elad, Faehnle, Christopher R, Jaber, Nadia, Pratt, Christopher P, Chen, Muhan, Zong, Wei-Xing, Marks, Michael S, Joshua-Tor, Leemor, Pappin, Darryl J, Trotman, Lloyd C (April 2015) PTEN Functions by Recruitment to Cytoplasmic Vesicles. Molecular Cell, 58 (2). pp. 255-268. ISSN 1097-2765

Naguib, Adam, Bencze, Gylua, Cho, Hyejin, Zheng, Wu, Tocilj, Ante, Elkayam, Elad, Faehnle, Christopher R, Jaber, Nadia, Pratt, Christopher, Chen, Muhan, Zong, Wei-Xing, Marks, Michael S, Joshua-Tor, Leemor, Pappin, Darryl J, Trotman, Lloyd C (August 2015) PTEN function is controlled by recruitment to cytoplasmic vesicles. In: AACR 106th Annual Meeting 2015.

Narzisi, G., Schatz, M. C. (2015) The challenge of small-scale repeats for indel discovery. Front Bioeng Biotechnol, 3. p. 8. ISSN 2296-4185

Navlakha, S., Bar-Joseph, Z. (January 2015) Distributed information processing in biological and computational systems. Communications of the ACM, 58 (1). pp. 94-102. ISSN 00010782 (ISSN)

Navlakha, S., Barth, A. L., Bar-Joseph, Z. (July 2015) Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks. PLoS Comput Biol, 11 (7). e1004347. ISSN 1553-734x

Navlakha, S., Faloutsos, C., Bar-Joseph, Z. (September 2015) MassExodus: modeling evolving networks in harsh environments. Data Mining and Knowledge Discovery, 29 (5). pp. 1211-1232. ISSN 13845810 (ISSN)

Neesse, A., Algul, H., Tuveson, D. A., Gress, T. M. (September 2015) Stromal biology and therapy in pancreatic cancer: a changing paradigm. Gut, 64 (9). pp. 1476-1484. ISSN 1468-3288 (Electronic)0017-5749 (Linking)

Norris, Ryan W., Strope, Cory L., McCandlish, David M., Stoltzfus, Arlin (2015) Bayesian priors for tree calibration: Evaluating two new approaches based on fossil intervals. bioRxiv.

Noutsos, C., Perera, A. M., Nikolau, B. J., Seaver, S. M., Ware, D. H. (May 2015) Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis. PLoS One, 10 (5). e0124501. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Nowak, D. G., Cho, H., Herzka, T., Wang, V. M. Y., Senturk, S., DeMarco, D. V., Ding, D., Fellmann, C., Beinortas, T., Kleinman, D., Watrud, K., Chen, M., Wilkinson, J. E., Castillo-Martin, M., Cordon-Cardo, C., Robinson, B. D., Trotman, L. C. (August 2015) Myc drives Pten/ p53-deficient proliferation and metastasis due to Il6-secretion and Akt-suppression via Phlpp2. Cancer Research, 75 (Supple). Abstract 2258. ISSN 0008-5472

O'Rawe, J. A., Ferson, S., Lyon, G. J. (January 2015) Accounting for uncertainty in DNA sequencing data. Trends Genet, 31 (2). pp. 61-68. ISSN 0168-9525

O'Rawe, Jason, Wu, Yiyang, Rope, Alan, Jimenez Barron, Laura, Swensen, Jeffrey J., Fang, Han, Mittelman, David, Highnam, Gareth, Robison, Reid J., Yang, Edward, Wang, Kai, Lyon, Gholson (2015) A variant in TAF1 is associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features. bioRxiv. (Unpublished)

Okano, Hideyuki, Mitra, Partha (April 2015) Brain-mapping projects using the common marmoset. Neuroscience Research, 93. pp. 3-7. ISSN 0168-0102

Ong-Abdullah, M., Ordway, J. M., Jiang, N., Ooi, S. E., Kok, S. Y., Sarpan, N., Azimi, N., Hashim, A. T., Ishak, Z., Rosli, S. K., Malike, F. A., Bakar, N. A., Marjuni, M., Abdullah, N., Yaakub, Z., Amiruddin, M. D., Nookiah, R., Singh, R., Low, E. L., Chan, K. L., Azizi, N., Smith, S. W., Bacher, B., Budiman, M. A., Van Brunt, A., Wischmeyer, C., Beil, M., Hogan, M., Lakey, N., Lim, C. C., Arulandoo, X., Wong, C. K., Choo, C. N., Wong, W. C., Kwan, Y. Y., Alwee, S. S., Sambanthamurthi, R., Martienssen, R. A. (September 2015) Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature, 525. pp. 533-537. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Otazu, G. H., Chae, H. G., Albeanu, D. F. (September 2015) Cortical feedback decorrelates olfactory bulb output in awake mice. Chemical Senses, 40 (7). p. 613. ISSN 0379-864X

Otazu, Gonzalo H, Chae, Honggoo, Davis, Martin B, Albeanu, Dinu F (June 2015) Cortical Feedback Decorrelates Olfactory Bulb Output in Awake Mice. Neuron, 86 (6). pp. 1461-1477. ISSN 0896-6273

O’Rawe, Jason A, Wu, Yiyang, Dörfel, Max J, Rope, Alan F, Au, P. Y.  Billie, Parboosingh, Jillian S, Moon, Sungjin, Kousi, Maria, Kosma, Konstantina, Smith, Christopher S, Tzetis, Maria, Schuette, Jane L, Hufnagel, Robert B, Prada, Carlos E, Martinez, Francisco, Orellana, Carmen, Crain, Jonathan, Caro-Llopis, Alfonso, Oltra, Silvestre, Monfort, Sandra, Jiménez-Barrón, Laura T, Swensen, Jeffrey, Ellingwood, Sara, Smith, Rosemarie, Fang, Han, Ospina, Sandra, Stegmann, Sander, Den Hollander, Nicolette, Mittelman, David, Highnam, Gareth, Robison, Reid, Yang, Edward, Faivre, Laurence, Roubertie, Agathe, Rivière, Jean-Baptiste, Monaghan, Kristin G, Wang, Kai, Davis, Erica E, Katsanis, Nicholas, Kalscheuer, Vera M, Wang, Edith H, Metcalfe, Kay, Kleefstra, Tjitske, Innes, A.  Micheil, Kitsiou-Tzeli, Sophia, Rosello, Monica, Keegan, Catherine E, Lyon, Gholson J (December 2015) TAF1 Variants Are Associated with Dysmorphic Features, Intellectual Disability, and Neurological Manifestations. The American Journal of Human Genetics, 97 (6). pp. 922-932. ISSN 0002-9297

Palm, W., Park, Y., Wright, K., Pavlova, N. N., Tuveson, D. A., Thompson, C. B. (July 2015) The Utilization of Extracellular Proteins as Nutrients Is Suppressed by mTORC1. Cell, 162 (2). pp. 259-270. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Palmerini, E., Staals, E. L., Maki, R. G., Pengo, S., Cioffi, A., Gambarotti, M., Picci, P., Daolio, P. A., Parafioriti, A., Morris, C., Antonescu, C. R., Gronchi, A., Casali, P. G., Donati, D. M., Ferrari, S., Stacchiotti, S. (January 2015) Tenosynovial giant cell tumour/pigmented villonodular synovitis: outcome of 294 patients before the era of kinase inhibitors. Eur J Cancer, 51 (2). pp. 210-7. ISSN 1879-0852 (Electronic)0959-8049 (Linking)

Parent, J. S., Jauvion, V., Bouche, N., Beclin, C., Hachet, M., Zytnicki, M., Vaucheret, H. (September 2015) Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes. Nucleic Acids Res, 43 (17). pp. 8464-75. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Parent, J. S., Bouteiller, N., Elmayan, T., Vaucheret, H. (January 2015) Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. Plant Journal, 81 (2). pp. 223-232. ISSN 09607412

Park, Jae-Hyun, Rasch, Morten Grønbech, Qiu, Jing, Lund, Ida Katrine, Egeblad, Mikala (May 2015) Presence of Insulin-Like Growth Factor Binding Proteins Correlates With Tumor-Promoting Effects of Matrix Metalloproteinase 9 in Breast Cancer. Neoplasia, 17 (5). pp. 421-433. ISSN 1476-5586

Park, M. H., Jin, H. K., Min, W. K., Lee, W. W., Lee, J. E., Akiyama, H., Herzog, H., Enikolopov, G. N., Schuchman, E. H., Bae, J. S. (April 2015) Neuropeptide Y regulates the hematopoietic stem cell microenvironment and prevents nerve injury in the bone marrow. EMBO J, 34 (12). pp. 1648-1660. ISSN 1460-2075 (Electronic)0261-4189 (Linking)

Patrick, P. S., Rodrigues, T. B., Kettunen, M. I., Lyons, S. K., Neves, A. A., Brindle, K. M. (2015) Development of Timd2 as a reporter gene for MRI. Magn Reson Med. ISSN 0740-3194

Pautler, M., Eveland, A. L., LaRue, T., Yang, F., Weeks, R., Lunde, C., Je, B. I., Meeley, R., Komatsu, M., Vollbrecht, E., Sakai, H., Jackson, D. (January 2015) FASCIATED EAR4 Encodes a bZIP Transcription Factor That Regulates Shoot Meristem Size in Maize. Plant Cell, 27 (1). pp. 104-120. ISSN 1040-4651

Pendleton, M., Sebra, R., Pang, A. W., Ummat, A., Franzen, O., Rausch, T., Stutz, A. M., Stedman, W., Anantharaman, T., Hastie, A., Dai, H., Fritz, M. H., Cao, H., Cohain, A., Deikus, G., Durrett, R. E., Blanchard, S. C., Altman, R., Chin, C. S., Guo, Y., Paxinos, E. E., Korbel, J. O., Darnell, R. B., McCombie, W. R., Kwok, P. Y., Mason, C. E., Schadt, E. E., Bashir, A. (August 2015) Assembly and diploid architecture of an individual human genome via single-molecule technologies. Nat Methods, 12 (8). pp. 780-786. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

Penzo, M. A., Robert, V., Tucciarone, J., De Bundel, D., Wang, M., Van Aelst, L., Darvas, M., Parada, L. F., Palmiter, R. D., He, M., Huang, Z. J., Li, B. (March 2015) The paraventricular thalamus controls a central amygdala fear circuit. Nature, 519 (7544). pp. 455-459. ISSN 0028-0836

Perna, D., Karreth, F. A., Rust, A. G., Perez-Mancera, P. A., Rashid, M., Iorio, F., Alifrangis, C., Arends, M. J., Bosenberg, M. W., Bollag, G., Tuveson, D. A., Adams, D. J. (January 2015) BRAF inhibitor resistance mediated by the AKT pathway in an oncogenic BRAF mouse melanoma model. Proceedings of the National Academy of Sciences of the United States of America, 112 (6). E536-E545. ISSN 0027-8424

Perova, Z., Delevich, K., Li, B. (February 2015) Depression of excitatory synapses onto parvalbumin interneurons in the medial prefrontal cortex in susceptibility to stress. Journal of Neuroscience, 35 (7). pp. 3201-3206. ISSN 02706474

Pervouchine, D. D., Djebali, S., Breschi, A., Davis, C. A., Barja, P. P., Dobin, A., Tanzer, A., Lagarde, J., Zaleski, C., See, L. H., Fastuca, M., Drenkow, J., Wang, H., Bussotti, G., Pei, B., Balasubramanian, S., Monlong, J., Harmanci, A., Gerstein, M., Beer, M. A., Notredame, C., Guigo, R., Gingeras, T. R. (January 2015) Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression. Nat Commun, 6. p. 5903. ISSN 2041-1723

Petsch, K., Manzotti, P. S., Tam, O. H., Meeley, R., Hammell, M., Consonni, G., Timmermans, M. C. (August 2015) Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development. Plant Cell, 27 (8). pp. 2163-2177. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Peverley, L. V., Halbrook, C. J., Hall, J. C., Ardito, C. M., Crawford, H. C. (July 2015) Investigating the role of ADAM10 in pancreatic tumor differentiation. Cancer Research, 75 (Supple). A77. ISSN 0008-5472

Pinskiy, V., Jones, J., Tolpygo, A. S., Franciotti, N., Weber, K., Mitra, P. P. (July 2015) High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique. PLoS One, 10 (7). e0102363. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Piscuoglio, S., Murray, M., Ng, C. K. Y., Rocco, E. G., Martelotto, L. G., Bidard, F. C., Eberle, C. A., Fusco, N., Sakr, R. A., De Mattos-Arruda, L., Lim, R., Baslan, T., Hicks, J., King, T. A., Brogi, E., Norton, L., Weigelt, B., Hudis, C. A., Reis, J. S. (May 2015) The genomic landscape of male breast cancers. Cancer Research, 75 (9 Supp). ISSN 0008-5472

Ponz-Sarvise, Mariano, Tuveson, David A., Yu, Kenneth H. (August 2015) Mouse Models of Pancreatic Ductal Adenocarcinoma. Hematology/Oncology Clinics of North America, 29 (4). pp. 609-617. ISSN 0889-8588

Powers, S. (March 2015) Cooperation between MYC and companion 8q genes in hepatocarcinogenesis. Hepatology, 61 (3). pp. 757-8. ISSN 0270-9139

Ramesh, M., Krishnan, N., Muthuswamy, S. K., Tonks, N. K. (April 2015) A Novel Phosphatidic Acid-Protein Tyrosine Phosphatase D2 Axis is Essential for ERBB2 Signaling in Mammary Epithelial Cells. Journal of Biological Chemistry, 290 (15). pp. 9646-9659. ISSN 0021-9258

Rao, S. G., Janiszewski, M. M., Duca, E., Nelson, B., Abhinav, K., Panagakou, I., Vass, S., Heck, M. M. S. (February 2015) Invadolysin acts genetically via the SAGA complex to modulate chromosome structure. Nucleic Acids Research, 43 (7). pp. 3546-3562.

Rathert, P., Roth, M., Neumann, T., Muerdter, F., Roe, J. S., Muhar, M., Deswal, S., Cerny-Reiterer, S., Peter, B., Jude, J., Hoffmann, T., Boryn, L. M., Axelsson, E., Schweifer, N., Tontsch-Grunt, U., Dow, L. E., Gianni, D., Pearson, M., Valent, P., Stark, A., Kraut, N., Vakoc, C. R., Zuber, J. (September 2015) Transcriptional plasticity promotes primary and acquired resistance to BET inhibition. Nature, 525. pp. 543-547. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Regan, Michael C., Romero-Hernandez, Annabel, Furukawa, Hiro (August 2015) A structural biology perspective on NMDA receptor pharmacology and function. Current Opinion in Structural Biology, 33. pp. 68-75. ISSN 0959-440X

Ren, J., Castel, S. E., Martienssen, R. A. (July 2015) Dicer in action at replication-transcription collisions. Mol Cell Oncol, 2 (3). e991224. ISSN 2372-3556 (Electronic)2372-3556 (Linking)

Robellet, Xavier, Thattikota, Yogitha, Wang, Fang, Wee, Tse-Luen, Pascariu, Mirela, Shankar, Sahana, Bonneil, Éric, Brown, Claire M, D'Amours, Damien (February 2015) A high-sensitivity phospho-switch triggered by Cdk1 governs chromosome morphogenesis during cell division. Genes & Development, 29 (4). pp. 426-439. ISSN 0890-9369

Rockland, K. S. (May 2015) About connections. Front Neuroanat, 9. p. 61. ISSN 1662-5129 (Electronic)1662-5129 (Linking)

Roe, Jae-Seok, Mercan, Fatih, Rivera, Keith, Pappin, Darryl J, Vakoc, Christopher R (June 2015) BET Bromodomain Inhibition Suppresses the Function of Hematopoietic Transcription Factors in Acute Myeloid Leukemia. Molecular Cell, 58 (6). pp. 1028-1036. ISSN 1097-2765

Roe, S., Gunaratnam, M., Spiteri, C., Sharma, P., Alharthy, R. D., Neidle, S., Moses, J. E. (August 2015) Synthesis and biological evaluation of hybrid acridine-HSP90 ligand conjugates as telomerase inhibitors. Org Biomol Chem, 13 (31). pp. 8500-4. ISSN 1477-0520

Rosa, M, Majka, P, Chaplin, T, Yu, H-H, Wojcik, D, Mitra, P (August 2015) Mapping neural connections in primates - an expanding role for cortical connectivity atlases. In: 25th Biennial Meeting of the International-Society-for-Neurochemistry Jointly with the 13th Meeting of the Asian-Pacific-Society-for-Neurochemistry in Conjunction with the 35th Meeting of the Australasian-Neuroscience-Society.

Rosati, A., Basile, A., D'Auria, R., d'Avenia, M., De Marco, M., Falco, A., Festa, M., Guerriero, L., Iorio, V., Parente, R., Pascale, M., Marzullo, L., Franco, R., Arra, C., Barbieri, A., Rea, D., Menichini, G., Hahne, M., Bijlsma, M., Barcaroli, D., Sala, G., di Mola, F. F., di Sebastiano, P., Todoric, J., Antonucci, L., Corvest, V., Jawhari, A., Firpo, M. A., Tuveson, D. A., Capunzo, M., Karin, M., De Laurenzi, V., Turco, M. C. (November 2015) BAG3 promotes pancreatic ductal adenocarcinoma growth by activating stromal macrophages. Nat Commun, 6. p. 8695. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Rosati, A., Basile, A., D'Auria, R., d'Avenia, M., De Marco, M., Falco, A., Festa, M., Guerriero, L., Iorio, V., Pascale, M., Franco, R., Arra, C., Barbieri, A., Rea, D., Menichini, G., Hahne, M., Bijlsma, M., Barcaroli, D., Tuveson, D. A., Todoric, J., Karin, M., De Laurenzi, V., Turco, M. C. (August 2015) PDAC cells release BAG3 that activates a paracrine loop with stromal macrophages. Cancer Research, 75 (Supple). Abstract 2393. ISSN 0008-5472

Roy, I., McAllister, D., Gorse, E., Dixon, K., Cheng, G., Getschman, A., Engle, D., Tsai, S., Tuveson, D., Evans, D., Volkman, B., Kalyanaraman, B., Dwinell, M. (July 2015) Chemokine biased agonists regulate pancreatic cancer migration and metastasis through bioenergetic signaling. Cancer Research, 75 (Supple). B55. ISSN 0008-5472

Roy, I., McAllister, D. M., Gorse, E., Dixon, K., Piper, C. T., Zimmerman, N. P., Getschman, A. E., Tsai, S., Engle, D. D., Evans, D. B., Volkman, B. F., Kalyanaraman, B., Dwinell, M. B. (September 2015) Pancreatic Cancer Cell Migration and Metastasis Is Regulated by Chemokine-Biased Agonism and Bioenergetic Signaling. Cancer Res, 75 (17). pp. 3529-42. ISSN 1538-7445 (Electronic)0008-5472 (Linking)

Rozhkov, N. V. (September 2015) Global Run-On Sequencing (GRO-seq) Library Preparation from Drosophila Ovaries. Methods Mol Biol, 1328. pp. 217-30. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Rubin De Celis, M. F., Garcia-Martin, R., Wittig, D., Valencia, G. D., Enikolopov, G., Funk, R. H., Chavakis, T., Bornstein, S. R., Androutsellis-Theotokis, A., Ehrhart-Bornstein, M. (June 2015) Multipotent glia-like stem cells mediate stress adaptation. Stem Cells, 33 (6). pp. 2037-2051. ISSN 0665099

Ruiz, C., Li, J., Luttgen, M. S., Kolatkar, A., Kendall, J. T., Flores, E., Topp, Z., Samlowski, W. E., McClay, E., Bethel, K., Ferrone, S., Hicks, J., Kuhn, P. (February 2015) Limited genomic heterogeneity of circulating melanoma cells in advanced stage patients. Physical biology, 12 (1). 016008. ISSN 1478-3967

Rye, I. H., Lundin, P., Maner, S., Fjelldal, R., Naume, B., Wigler, M., Hicks, J., Borresen-Dale, A. L., Zetterberg, A., Russnes, H. G. (April 2015) Quantitative multigene FISH on breast carcinomas identifies der(1;16)(q10;p10) as an early event in luminal A tumors. Genes, Chromosomes & Cancer, 54 (4). pp. 235-48. ISSN 1045-2257

Saiyin, H., Ardito-Abraham, C. M., Wu, Y., Wei, Y., Fang, Y., Han, X., Li, J., Zhou, P., Yi, Q., Maitra, A., Liu, J. O., Tuveson, D. A., Lou, W., Yu, L. (June 2015) Identification of novel vascular projections with cellular trafficking abilities on the microvasculature of pancreatic ductal adenocarcinoma. J Pathol, 236 (2). pp. 142-154. ISSN 0022-3417

Sanchez, Carlos G, Teixeira, Felipe Karam, Czech, Benjamin, Preall, Jonathan B, Zamparini, Andrea L, Seifert, Jessica R K., Malone, Colin D, Hannon, Gregory J, Lehmann, Ruth (December 2015) Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation. Cell Stem Cell, 18 (2). pp. 276-290. ISSN 1934-5909

Scaife, M. A., Nguyen, G. T., Rico, J., Lambert, D., Helliwell, K. E., Smith, A. G. (2015) Establishing Chlamydomonas reinhardtii as an industrial biotechnology host. Plant Journal.

Schatz, M. C. (October 2015) Biological data sciences in genome research. Genome Res, 25 (10). pp. 1417-22. ISSN 1549-5469 (Electronic)1088-9051 (Linking)

Schlomann, U., Koller, G., Conrad, C., Ferdous, T., Golfi, P., Garcia, A. M., Hofling, S., Parsons, M., Costa, P., Soper, R., Bossard, M., Hagemann, T., Roshani, R., Sewald, N., Ketchem, R. R., Moss, M. L., Rasmussen, F. H., Miller, M. A., Lauffenburger, D. A., Tuveson, D. A., Nimsky, C., Bartsch, J. W. (2015) ADAM8 as a drug target in pancreatic cancer. Nature Communications, 6. p. 6175. ISSN 2041-1723

Schreiner, Sarah M., Koo, Peter K., Zhao, Yao, Mochrie, Simon G. J., King, Megan C. (2015) The tethering of chromatin to the nuclear envelope supports nuclear mechanics. Nature Communications, 6. p. 7159.

Schuck, S., Stenlund, A. (January 2015) A conserved regulatory module at the C-terminus of the papillomavirus E1 helicase domain controls E1 helicase assembly. Journal of Virology, 89 (2). pp. 1129-1142. ISSN 0022-538x

Seshadri, S., Faust, T., Ishizuka, K., Delevich, K., Chung, Y., Kim, S. H., Cowles, M., Niwa, M., Jaaro-Peled, H., Tomoda, T., Lai, C., Anton, E. S., Li, B., Sawa, A. (December 2015) Interneuronal DISC1 regulates NRG1-ErbB4 signalling and excitatory-inhibitory synapse formation in the mature cortex. Nat Commun, 6. p. 10118. ISSN 2041-1723

Sever, R., Brugge, J. S. (April 2015) Signal Transduction in Cancer. Cold Spring Harbor Perspectives in Medicine, 5 (4). ISSN 19430264

Shah, P., McCandlish, D. M., Plotkin, J. B. (June 2015) Contingency and entrenchment in protein evolution under purifying selection. Proc Natl Acad Sci U S A, 112 (25). E3226-35. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Shen, C., Vakoc, C. R. (January 2015) Gain-of-function mutations in chromatin regulators as a tumorigenic mechanism and opportunity for therapeutic intervention. Current Opinion in Oncology, 27 (1). pp. 57-63. ISSN 1040-8746

Shen, Chen, Ipsaro, Jonathan J, Shi, Junwei, Milazzo, Joseph P, Wang, Eric, Roe, Jae-Seok, Suzuki, Yutaka, Pappin, Darryl J, Joshua-Tor, Leemor, Vakoc, Christopher R (December 2015) NSD3-Short Is an Adaptor Protein that Couples BRD4 to the CHD8 Chromatin Remodeler. Molecular Cell, 60 (6). pp. 847-859. ISSN 1097-2765

Shi, J., Wang, E., Milazzo, J. P., Wang, Z., Kinney, J. B., Vakoc, C. R. (June 2015) Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains. Nat Biotechnol, 33 (6). pp. 661-67. ISSN 1546-1696 (Electronic)1087-0156 (Linking)

Shields, M. A., Maguin, P., Kumar, P., Dallas, S. L., Egeblad, M. (July 2015) Lysyl oxidases are poor therapeutic targets in pancreatic cancer. Cancer Research, 75 (Supple). A43. ISSN 0008-5472

Shin, Jaehoon, Berg, Daniel A, Zhu, Yunhua, Shin, Joseph Y, Song, Juan, Bonaguidi, Michael A, Enikolopov, Grigori, Nauen, David W, Christian, Kimberly M, Ming, Guo-li, Song, Hongjun (August 2015) Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis. Cell Stem Cell, 17 (3). pp. 360-372. ISSN 1934-5909

Shuai, Y., Hirokawa, A., Ai, Y., Zhang, M., Li, W., Zhong, Y. (December 2015) Dissecting neural pathways for forgetting in Drosophila olfactory aversive memory. Proc Natl Acad Sci U S A, 112 (48). E6663-72. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Smagin, D. A., Park, J. H., Michurina, T. V., Peunova, N., Glass, Z., Sayed, K., Bondar, N. P., Kovalenko, I. N., Kudryavtseva, N. N., Enikolopov, G. (December 2015) Altered Hippocampal Neurogenesis and Amygdalar Neuronal Activity in Adult Mice with Repeated Experience of Aggression. Front Neurosci, 9. p. 443. ISSN 1662-4548 (Print)1662-453X (Linking)

Smedley, D., Haider, S., Durinck, S., Pandini, L., Provero, P., Allen, J., Arnaiz, O., Awedh, M. H., Baldock, R., Barbiera, G., Bardou, P., Beck, T., Blake, A., Bonierbale, M., Brookes, A. J., Bucci, G., Buetti, I., Burge, S., Cabau, C., Carlson, J. W., Chelala, C., Chrysostomou, C., Cittaro, D., Collin, O., Cordova, R., Cutts, R. J., Dassi, E., Genova, A. D., Djari, A., Esposito, A., Estrella, H., Eyras, E., Fernandez-Banet, J., Forbes, S., Free, R. C., Fujisawa, T., Gadaleta, E., Garcia-Manteiga, J. M., Goodstein, D., Gray, K., Guerra-Assuncao, J. A., Haggarty, B., Han, D. J., Han, B. W., Harris, T., Harshbarger, J., Hastings, R. K., Hayes, R. D., Hoede, C., Hu, S., Hu, Z. L., Hutchins, L., Kan, Z., Kawaji, H., Keliet, A., Kerhornou, A., Kim, S., Kinsella, R., Klopp, C., Kong, L., Lawson, D., Lazarevic, D., Lee, J. H., Letellier, T., Li, C. Y., Lio, P., Liu, C. J., Luo, J., Maass, A., Mariette, J., Maurel, T., Merella, S., Mohamed, A. M., Moreews, F., Nabihoudine, I., Ndegwa, N., Noirot, C., Perez-Llamas, C., Primig, M., Quattrone, A., Quesneville, H., Rambaldi, D., Reecy, J., Riba, M., Rosanoff, S., Saddiq, A. A., Salas, E., Sallou, O., Shepherd, R., Simon, R., Sperling, L., Spooner, W., Staines, D. M., Steinbach, D., Stone, K., Stupka, E., Teague, J. W., Dayem Ullah, A. Z., Wang, J., Ware, D. (April 2015) The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res, 43 (W1). W589-W598. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Smolka, M., Rescheneder, P., Schatz, M. C., von Haeseler, A., Sedlazeck, F. J. (October 2015) Teaser: Individualized benchmarking and optimization of read mapping results for NGS data. Genome Biol, 16 (1). p. 235. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Somlo, George, Barlow, William, Moore, Halle, Gralow, Julie, Schott, Anne, Hayes, Daniel, Kuhn, Peter, Hicks, James, Lew, Danika, Tripathy, Debu, Hortobagyl, Gabriel (May 2015) Fulvestrant alone versus fulvestrant and everolimus versus fulvestrant, everolimus and anastrozole: A Phase III randomized, placebo-controlled trial in postmenopausal patients with hormone-receptor-positive stage IV breast cancer: SWOG-Clinical Trials Ini. Cancer Research, 75 (9 Supp). OT2-1. ISSN 1538-7445

Stahlhut, C., Slack, F. J. (July 2015) Combinatorial Action of MicroRNAs let-7 and miR-34 Effectively Synergizes with Erlotinib to Suppress Non-small Cell Lung Cancer Cell Proliferation. Cell Cycle, 14 (13). pp. 2171-80. ISSN 1551-4005 (Electronic)1551-4005 (Linking)

Stahlhut, C. E., Watrud, K. E., Ambrico, A. J., Cho, H., Wang, L. L., Qi, J., Cantley, L. C., Bradner, J., Trotman, L. C. (August 2015) Myc vs. Akt therapy in RapidCap, a GEM model for metastatic prostate cancer. Cancer Research, 75 (Supple). Abstract 2636. ISSN 0008-5472

Staropoli, John F., Li, Huo, Chun, Seung J., Allaire, Norm, Cullen, Patrick, Thai, Alice, Fleet, Christina M., Hua, Yimin, Bennett, C. Frank, Krainer, Adrian R., Kerr, Doug, McCampbell, Alexander, Rigo, Frank, Carulli, John P. (January 2015) Rescue of gene-expression changes in an induced mouse model of spinal muscular atrophy by an antisense oligonucleotide that promotes inclusion of SMN2 exon 7. Genomics, 105 (4). pp. 220-228. ISSN 0888-7543

Stein, P., Rozhkov, N. V., Li, F., Cardenas, F. L., Davydenk, O., Vandivier, L. E., Gregory, B. D., Hannon, G. J., Schultz, R. M. (February 2015) Essential Role for Endogenous siRNAs during Meiosis in Mouse Oocytes. PLoS Genetics, 11 (2). e1005013. ISSN 1553-7390

Stephens, Z. D., Lee, S. Y., Faghri, F., Campbell, R. H., Zhai, C., Efron, M. J., Iyer, R., Schatz, M. C., Sinha, S., Robinson, G. E. (July 2015) Big Data: Astronomical or Genomical? PLoS Biol, 13 (7). e1002195. ISSN 1545-7885 (Electronic)1544-9173 (Linking)

Stillman, B. (July 2015) Reconsidering DNA Polymerases at the Replication Fork in Eukaryotes. Molecular Cell, 59 (2). pp. 139-141. ISSN 1097-2765

Stillman, Bruce (2015) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Stoltzfus, A., McCandlish, D. M. (November 2015) Mutation-biased adaptation in Andean house wrens. Proc Natl Acad Sci U S A, 112 (45). pp. 13753-4. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Sussillo, David, Churchland, Mark M., Kaufman, Matthew T., Shenoy, Krishna V. (June 2015) A neural network that finds a naturalistic solution for the production of muscle activity. Nat Neurosci, 18 (7). pp. 1025-1033. ISSN 1097-6256

Tajima, K., Yae, T., Javaid, S., Tam, O., Comaills, V., Morris, R., Wittner, B. S., Liu, M., Engstrom, A., Takahashi, F., Black, J. C., Ramaswamy, S., Shioda, T., Hammell, M., Haber, D. A., Whetstine, J. R., Maheswaran, S. (September 2015) SETD1A modulates cell cycle progression through a miRNA network that regulates p53 target genes. Nat Commun, 6. p. 8257. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Taylor-Teeples, M., Lin, L., de Lucas, M., Turco, G., Toal, T. W., Gaudinier, A., Young, N. F., Trabucco, G. M., Veling, M. T., Lamothe, R., Handakumbura, P. P., Xiong, G., Wang, C., Corwin, J., Tsoukalas, A., Zhang, L., Ware, D., Pauly, M., Kliebenstein, D. J., Dehesh, K., Tagkopoulos, I., Breton, G., Pruneda-Paz, J. L., Ahnert, S. E., Kay, S. A., Hazen, S. P., Brady, S. M. (January 2015) An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature, 517 (7536). pp. 571-575. ISSN 0028-0836

Teixeira, F. K., Sanchez, C. G., Hurd, T. R., Seifert, J. R., Czech, B., Preall, J. B., Hannon, G. J., Lehmann, R. (April 2015) ATP synthase promotes germ cell differentiation independent of oxidative phosphorylation. Nature Cell Biology, 17 (5). pp. 689-696. ISSN 1465-7392

Tektonidis, Marco, Kim, Il-Han, Chen, Yi-Chun M., Eils, Roland, Spector, David L., Rohr, Karl (January 2015) Non-Rigid Multi-Frame registration of cell nuclei in live cell fluorescence microscopy image data. Medical Image Analysis, 19 (1). pp. 1-14. ISSN 1361-8415

Thomas, C. G., Wang, W., Jovelin, R., Ghosh, R., Lomasko, T., Trinh, Q., Kruglyak, L., Stein, L. D., Cutter, A. D. (May 2015) Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis. Genome Research, 25 (5). pp. 667-678. ISSN 1088-9051

Thompson, A. M., Yu, J., Timmermans, M. C., Schnable, P., Crants, J. C., Scanlon, M. J., Muehlbauer, G. J. (May 2015) Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3 (Bethesda), 5 (5). pp. 819-27. ISSN 2160-1836 (Electronic)2160-1836 (Linking)

Tian, C. X., Ohlund, D., Clauser, K., Carr, S. A., Tuveson, D. A., Hynes, R. O. (August 2015) Profiling of extracellular matrix proteins in pancreatic ductal adenocarcinoma progression and metastasis. Cancer Research, 75 (Supple). ISSN 0008-5472

Tian, C. X., Olund, D., Tuveson, D., Hynes, R. O. (July 2015) Understanding the roles of extracellular matrix proteins in pancreatic ductal adenocarcinoma progression and metastasis. Cancer Research, 75 (Supple). A45. ISSN 0008-5472

Tian, D., Stoppel, L. J., Heynen, A. J., Lindemann, L., Jaeschke, G., Mills, A. A., Bear, M. F. (January 2015) Contribution of mGluR5 to pathophysiology in a mouse model of human chromosome 16p11.2 microdeletion. Nature Neuroscience, 18. pp. 182-184. ISSN 1097-6256

Tournier, Cathy, Davies, Clare C., Harvey, Emma, McMahon, Raymond F. T., Finegan, Katherine G., Connor, Frances, Davis, Roger J., Tuveson, David A. (June 2015) Impaired JNK signaling cooperates with KrasG12D expression to accelerate pancreatic ductal adenocarcinoma. Pancreatology, 15 (3, Sup). S36. ISSN 1424-3903

Trotman, L. C., Nowak, D. G., Cho, H., Herzka, T., Watrud, K., DeMarco, D. V., Wang, V. M., Senturk, S., Fellmann, C., Ding, D., Beinortas, T., Kleinman, D., Chen, M., Sordella, R., Wilkinson, J. E., Castillo-Martin, M., Cordon-Cardo, C., Robinson, B. D. (June 2015) Myc drives Pten/trp53-deficient proliferation and metastasis due to Il6-secretion and Akt-suppression via Phlpp2. Cancer Discovery, 5 (6). pp. 636-651. ISSN 21598274

Tscherner, M., Zwolanek, F., Jenull, S., Sedlazeck, F. J., Petryshyn, A., Frohner, I. E., Mavrianos, J., Chauhan, N., von Haeseler, A., Kuchler, K. (October 2015) The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways. PLoS Pathog, 11 (10). e1005218. ISSN 1553-7374 (Electronic)1553-7366 (Linking)

Tuveson, D., Rai, K. R. (June 2015) Augmenting NF-kappaB in poor-risk CLL: A general paradigm for other cancers? J Exp Med, 212 (6). pp. 830-1. ISSN 1540-9538 (Electronic)0022-1007 (Linking)

Underwood, C. J., Martienssen, R. A. (January 2015) Argonautes team up to silence transposable elements in Arabidopsis. Embo Journal, 34 (5). pp. 579-580. ISSN 0261-4189

Urano, D., Jackson, D., Jones, A. M. (May 2015) A G protein alpha null mutation confers prolificacy potential in maize. Journal of Experimental Botany, 66 (15). pp. 4511-4515. ISSN 0022-0957

Urick, A. K., Hawk, L. M., Cassel, M. K., Mishra, N. K., Liu, S., Adhikari, N., Zhang, W., Dos Santos, C. O., Hall, J. L., Pomerantz, W. C. (October 2015) Dual Screening of BPTF and Brd4 Using Protein-Observed Fluorine NMR Uncovers New Bromodomain Probe Molecules. ACS Chem Biol, 10 (10). pp. 2246-56. ISSN 1554-8937 (Electronic)1554-8929 (Linking)

Van Eck, J, Brooks, C, Nekrasov, V, Lippman, Z (May 2015) Application of CRISPR/Cas9 Technology for Characterization of Developmental Genes in Tomato. In: In Vitro Biology Meeting.

Vareslija, D., McBryan, J., Fagan, A., Redmond, A., Hao, Y., Hill, A. D. K., Young, L. S. (May 2015) Adaptation to AI therapy in breast cancer can induce dynamic alterations in ER activity resulting in estrogen independent metastatic tumours. Cancer Research, 75 (9 supp). Abstract nr P3-05. ISSN 0008-5472

Velasco, C. R., Stepansky, A., Dago, A., Carlson, A., Kolatkar, A., Kendall, J., Hicks, J., Kuhn, P. (August 2015) Single-cell molecular profiling of fluid biopsies of epithelial ovarian cancer. Clinical Cancer Research, 21. ISSN 1078-0432

Verleyen, W., Ballouz, S., Gillis, J. (March 2015) Measuring the wisdom of the crowds in network-based gene function inference. Bioinformatics, 31 (5). pp. 745-752. ISSN 1367-4803

Vigilant, L., Roy, J., Bradley, B. J., Stoneking, C. J., Robbins, M. M., Stoinski, T. S. (May 2015) Reproductive competition and inbreeding avoidance in a primate species with habitual female dispersal. Behavioral Ecology and Sociobiology, 69 (7). pp. 1163-1172. ISSN 03405443

Wagenblast, E., Soto, M., Gutierrez-Angel, S., Hartl, C. A., Gable, A. L., Maceli, A. R., Erard, N., Williams, A. M., Kim, S. Y., Dickopf, S., Harrell, J. C., Smith, A. D., Perou, C. M., Wilkinson, J. E., Hannon, G. J., Knott, S. R. (April 2015) A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis. Nature, 520 (7547). pp. 358-362. ISSN 0028-0836

Wang, E., Kawaoka, S., Roe, J. S., Shi, J., Hohmann, A. F., Xu, Y., Bhagwat, A. S., Suzuki, Y., Kinney, J. B., Vakoc, C. R. (April 2015) The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)

Wang, H., Warner-Schmidt, J., Varela, S., Enikolopov, G., Greengard, P., Flajolet, M. (August 2015) Norbin ablation results in defective adult hippocampal neurogenesis and depressive-like behavior in mice. Proc Natl Acad Sci U S A, 112 (31). pp. 9745-9750. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Wang, L., Ware, D., Lushbough, C., Merchant, N., Stein, L. (February 2015) A genome-wide association study platform built on iPlant cyber-infrastructure. Concurrency Computation, 27 (2). pp. 420-432. ISSN 15320626

Wang, X., Yu, X., Zhu, W., McCombie, W. R., Antoniou, E., Powers, R. S., Davidson, N. O., Li, E., Williams, J. (June 2015) A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing. Bioinformatics, 31 (12). pp. 2040-2042. ISSN 1367-4803

Wasik, K., Gurtowski, J., Zhou, X., Ramos, O. M., Delas, M. J., Battistoni, G., El Demerdash, O., Falciatori, I., Vizoso, D. B., Smith, A. D., Ladurner, P., Scharer, L., McCombie, W. R., Hannon, G. J., Schatz, M. (September 2015) Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano. Proc Natl Acad Sci U S A, 112 (40). pp. 12462-12467. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Wasik, K. A., Tam, O. H., Knott, S. R., Falciatori, I., Hammell, M., Vagin, V. V., Hannon, G. J. (June 2015) RNF17 blocks promiscuous activity of PIWI proteins in mouse testes. Genes Dev, 29 (13). pp. 1403-1415. ISSN 1549-5477 (Electronic)0890-9369 (Linking)

Watson, J. D. (2015) The pursuit of happiness: Liberty Medal Address, City of Philadelphia, 4 July 2000. In: Culture of Chemistry: The Best Articles on the Human Side of 20th-Century Chemistry from the Archives of the Chemical Intelligencer. Springer US, pp. 43-44. ISBN 9781489975652 (ISBN); 9781489975645 (ISBN)

Weil, Z. M., Borniger, J. C., Cisse, Y. M., Abi Salloum, B. A., Nelson, R. J. (April 2015) Neuroendocrine control of photoperiodic changes in immune function. Front Neuroendocrinol, 37. pp. 108-18. ISSN 1095-6808 (Electronic)0091-3022 (Linking)

Wences, A. H., Schatz, M. C. (September 2015) Metassembler: merging and optimizing de novo genome assemblies. Genome Biol, 16 (1). p. 207. ISSN 1474-760X (Electronic)1474-7596 (Linking)

Witkowski, Jan (October 2015) The race to decode life. Current Biology.

Witkowski, J. A. (2015) The Road to Discovery: A Short History of Cold Spring Harbor Laboratory. Cold Spring Harbor Laboratory Press. ISBN 978-1-621821-08-3

Worhunsky, David J, Gupta, Mihir, Gholami, Sepideh, Tran, Thuy B, Ganjoo, Kristen N, van de Rijn, Matt, Visser, Brendan C, Norton, Jeffrey A, Poultsides, George A (June 2015) Leiomyosarcoma: One disease or distinct biologic entities based on site of origin? Journal of Surgical Oncology, 111 (7). pp. 808-812. ISSN 0022-4790

Wu, M. V., Luna, V. M., Hen, R. (August 2015) Running rescues a fear-based contextual discrimination deficit in aged mice. Front Syst Neurosci, 9. p. 114. ISSN 1662-5137 (Electronic)1662-5137 (Linking)

Xiong, Q., Znamenskiy, P., Zador, A. M. (May 2015) Selective corticostriatal plasticity during acquisition of an auditory discrimination task. Nature, 521 (7552). pp. 348-351. ISSN 0028-0836

Xu, C., Liberatore, K. L., MacAlister, C. A., Huang, Z., Chu, Y. H., Jiang, K., Brooks, C., Ogawa-Ohnishi, M., Xiong, G., Pauly, M., Van Eck, J., Matsubayashi, Y., van der Knaap, E., Lippman, Z. B. (July 2015) A cascade of arabinosyltransferases controls shoot meristem size in tomato. Nat Genet, 47 (7). pp. 784-792. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Xu, F., Huang, Y., Li, L., Gannon, P., Linster, E., Huber, M., Kapos, P., Bienvenut, W., Polevoda, B., Meinnel, T., Hell, R., Giglione, C., Zhang, Y., Wirtz, M., Chen, S., Li, X. (May 2015) Two N-terminal acetyltransferases antagonistically regulate the stability of a nod-like receptor in Arabidopsis. Plant Cell, 27 (5). pp. 1547-62. ISSN 1532-298X (Electronic)1040-4651 (Linking)

Xu, J., Cheng, Y., Lai, A., Lv, Z., Campbell, R. A., Yu, H., Luo, C., Shan, B., Xu, L., Xu, X. (May 2015) Autoantibodies Affect Brain Density Reduction in Nonneuropsychiatric Systemic Lupus Erythematosus Patients. J Immunol Res, 2015. p. 920718. ISSN 2314-7156 (Electronic)2314-7156 (Linking)

Yan, X., Hu, Z., Feng, Y., Hu, X., Yuan, J., Zhao, S. D., Zhang, Y., Yang, L., Shan, W., He, Q., Fan, L., Kandalaft, L. E., Tanyi, J. L., Li, C., Yuan, C. X., Zhang, D., Yuan, H., Hua, K., Lu, Y., Katsaros, D., Huang, Q., Montone, K., Fan, Y., Coukos, G., Boyd, J., Sood, A. K., Rebbeck, T., Mills, G. B., Dang, C. V., Zhang, L. (2015) Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers. Cancer Cell, 28 (4). pp. 529-540. ISSN 1535-6108

Yang, F., Bui, H. T., Pautler, M., Llaca, V., Johnston, R., Lee, B. H., Kolbe, A., Sakai, H., Jackson, D. (January 2015) A Maize Glutaredoxin Gene, Abphyl2, Regulates Shoot Meristem Size and Phyllotaxy. Plant Cell, 27 (1). pp. 121-131. ISSN 1040-4651

Ye, S., Ponz-Sarvise, M., Chang, S. S., Chang, W. C., Chen, C. H., Hsu, J. L., Hung, M. C. (April 2015) Proteasome inhibition enhances the killing effect of BikDD gene therapy. American Journal of Translational Research, 7 (2). pp. 319-327. ISSN 19438141

Yu, A., Saudemont, B., Bouteiller, N., Elvira-Matelot, E., Lepere, G., Parent, J. S., Morel, J. B., Cao, J., Elmayan, T., Vaucheret, H. (August 2015) Second site mutagenesis of a hypomorphic ago1 allele identifies SKI3 as an endogenous suppressor of PTGS. Plant Physiol. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Yu, A., Saudemont, B., Bouteiller, N., Elvira-Matelot, E., Lepere, G., Parent, J. S., Morel, J. B., Cao, J., Elmayan, T., Vaucheret, H. (August 2015) Second site mutagenesis of a hypomorphic ago1 allele identifies SKI3 as an endogenous suppressor of PTGS. Plant Physiol, 169 (2). pp. 1266-1274. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Yu, C., Horev, G., Rubin, N., Derdikman, D., Haidarliu, S., Ahissar, E. (March 2015) Coding of object location in the vibrissal thalamocortical system. Cereb Cortex, 25 (3). pp. 563-77. ISSN 1460-2199 (Electronic)1047-3211 (Linking)

Yu, J. R., Tai, Y., Jin, Y., Hammell, M. C., Wilkinson, J. E., Roe, J. S., Vakoc, C. R., Van Aelst, L. (February 2015) TGF-beta/Smad signaling through DOCK4 facilitates lung adenocarcinoma metastasis. Genes Dev, 29 (3). pp. 250-61. ISSN 0890-9369

Yu, Y., Gu, J., Jin, Y., Luo, Y., Preall, J. B., Ma, J., Czech, B., Hannon, G. J. (October 2015) Panoramix enforces piRNA-dependent cotranscriptional silencing. Science, 350 (6258). pp. 339-42. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Yun, J., Mullarky, E., Lu, C., Bosch, K. N., Kavalier, A., Rivera, K., Roper, J., Chio, II, Giannopoulou, E. G., Rago, C., Muley, A., Asara, J. M., Paik, J., Elemento, O., Chen, Z., Pappin, D. J., Dow, L. E., Papadopoulos, N., Gross, S. S., Cantley, L. C. (December 2015) Vitamin C selectively kills KRAS and BRAF mutant colorectal cancer cells by targeting GAPDH. Science, 350 (6266). pp. 1391-1396. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Zambirinis, C. P., Levie, E., Nguy, S., Avanzi, A., Barilla, R., Xu, Y., Seifert, L., Daley, D., Greco, S. H., Deutsch, M., Jonnadula, S., Torres-Hernandez, A., Tippens, D., Pushalkar, S., Eisenthal, A., Saxena, D., Ahn, J., Hajdu, C., Engle, D. D., Tuveson, D., Miller, G. (October 2015) TLR9 ligation in pancreatic stellate cells promotes tumorigenesis. J Exp Med. ISSN 1540-9538 (Electronic)0022-1007 (Linking)

Zepeda-Mendoza, C. J., Mukhopadhyay, S., Wong, E. S., Harder, N., Splinter, E., de Wit, E., Eckersley-Maslin, M. A., Ried, T., Eils, R., Rohr, K., Mills, A., de Laat, W., Flicek, P., Sengupta, A. M., Spector, D. L. (November 2015) Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2. BMC Genomics, 16 (1). p. 982. ISSN 1471-2164 (Electronic)1471-2164 (Linking)

Zhao, Z., Chen, C. C., Rillahan, C. D., Shen, R., Kitzing, T., McNerney, M. E., Diaz-Flores, E., Zuber, J., Shannon, K., Le Beau, M. M., Spector, M. S., Kogan, S. C., Lowe, S. W. (March 2015) Cooperative loss of RAS feedback regulation drives myeloid leukemogenesis. Nature Genetics, 47. pp. 539-543. ISSN 1061-4036

Zhou, C., Franconville, R., Vaughan, A. G., Robinett, C. C., Jayaraman, V., Baker, B. S. (September 2015) Central neural circuitry mediating courtship song perception in male. Elife, 4. ISSN 2050-084X (Electronic)2050-084X (Linking)

Zhou, X., Battistoni, G., El Demerdash, O., Gurtowski, J., Wunderer, J., Falciatori, I., Ladurner, P., Schatz, M. C., Hannon, G. J., Wasik, K. A. (November 2015) Dual functions of Macpiwi1 in transposon silencing and stem cell maintenance in the flatworm Macrostomum lignano. RNA, 21 (11). pp. 1885-1897. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Zhu, Xiaoyan, Tollkuhn, Jessica, Taylor, Havilah, Rosenfeld, Michael G (December 2015) Notch-Dependent Pituitary SOX2(+) Stem Cells Exhibit a Timed Functional Extinction in Regulation of the Postnatal Gland. Stem Cell Reports, 5 (6). pp. 1196-1209. ISSN 2213-6711

van Schouwenburg, Pauline A., Davenport, Emma E., Kienzler, Anne-Kathrin, Marwah, Ishita, Wright, Benjamin, Lucas, Mary, Malinauskas, Tomas, Martin, Hilary C., Lockstone, Helen E., Cazier, Jean-Baptiste, Chapel, Helen M., Knight, Julian C., Patel, Smita Y. (June 2015) Application of whole genome and RNA sequencing to investigate the genomic landscape of common variable immunodeficiency. Clinical Immunology, 160 (2). pp. 301-314. ISSN 1521-6616