Items where Year is 2026

Paper

Abuelanin, Mohamed, Kaya, Gulhan, Lake, Juniper A, Lambert, Christine, Wu, Melody V, Berendzen, Kristen M, Krasheninnikova, Ksenia, Wood, Jonathan MD, Solomon, Nancy G, Donaldson, Zoe R, Bales, Karen L, Howe, Kerstin, Korlach, Jonas, Manoli, Devanand, Tollkuhn, Jessica, Dennis, Megan Y (March 2026) Single-library chromosome-scale diploid assemblies of vole genomes resolve a species-specific duplication implicated in pair bonding. bioRxiv. ISSN 2692-8205 (Submitted)

Aggarwal, Disha, Russo, Suzanne, Anderson, Kendall, Floyd, Taylor, Utama, Raditya, Rouse, James A, Naik, Payal, Pawlak, Sara, Iyer, Shruti V, Kramer, Melissa, Satpathy, Shuchismita, Wilkinson, John E, Gao, Qing, Bhatia, Sonam, Arun, Gayatri, Akerman, Martin, McCombie, W Richard, Revenko, Alexey, Kostroff, Karen, Spector, David L (April 2026) Patient-derived organoid xenografts reveal the multifaceted role of the lncRNA MALAT1 in breast cancer progression. bioRxiv. ISSN 2692-8205 (Submitted)

Amundson, Kirk R, Hendelman, Anat, Ciren, Danielle, Yang, Hailong, de Neve, Amber E, Tal, Shai, Sulema, Adar, Jackson, David, Bartlett, Madelaine E, Lippman, Zachary B, Efroni, Idan (March 2026) A deep-time landscape of plant cis-regulatory sequence evolution. Science. eadt8983. ISSN 0036-8075

Balasooriya, Gayan I, Naik, Payal, Wee, Tse-Luen, Spector, David L (January 2026) A sub-set of guanine- and cytosine-rich genes are actively transcribed at the nuclear lamin B1 region. Cellular and Molecular Life Sciences, 83 (1). p. 51. ISSN 1420-682X (Public Dataset)

Bauer, Jack, Zali, Narges, Chouhan, Om Prakash, Demerdash, Osama El, Loell, Kaiser, Kinney, Justin Block, Joshua-Tor, Leemor W, Stillman, Bruce (March 2026) Evolution of Origin Sequence and Recognition for Licensing of Eukaryotic DNA Replication. bioRxiv. ISSN 2692-8205 (Submitted)

Bencze, Gyula, Venkataramani, Prabhadevi, Elkayam, Elad, Rivera, Keith D, Garg, Ankur, Szabadakai, Istvan, Orfi, Laszlo, Joshua-Tor, Leemor, Pappin, Darryl J, Tonks, Nicholas K (March 2026) Identification and Validation of an Inhibitor of the Protein Kinases PIM and DYRK. Journal of Medicinal Chemistry, 69 (7). pp. 7920-7932. ISSN 0022-2623 (Public Dataset)

Bisetegn, Habtye, Dias de Oliveira, Beatriz Cristina, Passos, Arthur de Oliveira, Alves, Cristiane de Santis, Ernst, Evan, Nogueira Cano, Maria Isabel (January 2026) An intimate view of Leishmania infantum chromosome ends reveals less conserved subtelomeric regions and variations in the telomeric repeat. International Journal for Parasitology. p. 104769. ISSN 0020-7519 (Public Dataset)

Callaway, Mackenzie K, Comfort, Lizelle, Anandan, Dhivyaa, Sharma, Ruby, Florez, Narjust, Lyons, Traci R, Germain, Doris, Cho, Kathleen R, Rochelson, Burton L, Bonanno, Clarissa, Oktay, Kutluk, Roychoudhury, Sudarshana, O’donnell, Eileen, Barakat, Richard, Marquardt, Joanne, Bianchi, Diana W, Cardonick, Elyce, Norton, Larry, Partridge, Ann H, Domchek, Susan M, Borges, Virginia F, Amant, Frédéric, Dos Santos, Camila O (May 2026) Cancer During Pregnancy: Navigating Clinical and Research Challenges. Current Oncology, 33 (5). p. 296. ISSN 1718-7729

Cen, Yuxin, R Alves, Steven, Song, Dongyan, Felice, Christy, Preall, Jonathan B, Van Aelst, Linda, Tonks, Nicholas K (February 2026) PTP1B inhibition promotes microglial phagocytosis in Alzheimer's disease models by enhancing SYK signaling. Proceedings of the National Academy of Sciences of the United States of America, 123 (6). e2521944123. ISSN 0027-8424

Cheadle, Lucas (April 2026) Two's company: Astrocytes and microglia team up to refine developing circuits. Neuron, 114 (8). pp. 1326-1328. ISSN 0896-6273

Chen, Y, Norman, RX, Toufektchan, E, Luan, X, Shim, A, Rosenberg, H, Kovacs, MT, Nichols, A, Hickling, J, Cifani, P, Kentsis, A, Zhou, W, Maciejowski, J (March 2026) ER-tethering directs TREX1 penetration of a BAF-dependent barrier at micronuclei. Molecular Cell, 86 (6). 1099-1115.e10. ISSN 1097-2765

Chung, Charlie, Yueh, Brian, Subhash, Santhilal, Eskiocak, Onur, Nizam, Aaron, Viola, Marissa, Belleau, Pascal, Kredentser, Ariel, Kapedani, Arisa, Krasnitz, Alexander, Simon, Ken, Meier, Werner, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (February 2026) Ancestrally diverse autologous patient-derived organoid - immune cell co-culture platform for addressing immunotherapeutic outcome disparities in high-grade endometrial cancer. Cancer Research Communications. ISSN 2767-9764

Cowley, Benjamin R, Stan, Patricia L, Pillow, Jonathan W, Smith, Matthew A (February 2026) Compact deep neural network models of the visual cortex. Nature. ISSN 0028-0836 (Public Dataset)

Cunniff, Patrick J, Fitzpatrick, Connor, Bauer, Jack, Skopelitis, Damianos, Klingbeil, Olaf, Yoshimoto, Toyoki, Joshua-Tor, Leemor, Vakoc, Christopher R (April 2026) Marker-based CRISPR screens identify POU2F1 as a regulator of DLL3 and neuroendocrine identity in small cell lung cancer. bioRxiv. ISSN 2692-8205 (Submitted)

Daruwalla, Kyle, Nozal Martin, Irene, Zhang, Linghua, Naglič, Diana, Frankel, Andrew, Rasgaitis, Catherine, Zhao, Rubin, Zhang, Xinyan, Ahmad, Zainab, Borniger, Jeremy C, Hou, Xun Helen (April 2026) Cheese3D enables sensitive detection and analysis of whole-face movement in mice. Nature Neuroscience. ISSN 1097-6256 (Public Dataset)

Dong, Liang, Sun, Yonghao, Kang, Lu, Li, Zichao, Liang, Yameng, Sheng, Huangjun, Tian, Feng, Jackson, David, Yang, Fang (March 2026) Dynamic and cell-type specific transcriptional reprogramming underlies the floral transition in the maize shoot apical meristem. Genome Biology, 27 (1). p. 143. ISSN 1474-7596

Fam, Kyong T, Chodisetti, Pavan Kumar, Wang, Zifei, Homer, Joshua A, Smedley, Christopher J, Kitamura, Seiya, Silva, Benjamin, Xiong, Yijun, Hansel-Harris, Althea, Holcomb, Matthew, Babarinde, Simeon, Turner, Adrianna M, Van Tyne, Daria, Wilson, Ian A, Forli, Stefano, Cravatt, Benjamin F, Park, Donghyun, Wolan, Dennis W, Moses, John E, Hang, Howard C (March 2026) Genetic and pharmacological inactivation of peptidoglycan remodeling increases antibiotic susceptibility of vancomycin-resistant Enterococcus faecium. bioRxiv. ISSN 2692-8205 (Submitted)

Ferro, Austin, Vita, Dominic J, Fallon, Trevor, Arshad, Anosha, Boyd, Leah, Stanley, Tess, Lin, Qianyu, Berisha, Adrian, Vrudhula, Uma, Gomez, Adrian M, Sanchez-Martin, Irene, Borniger, Jeremy C, Cheadle, Lucas (January 2026) Fn14 is an activity-dependent, Bmal1-regulated cytokine receptor that induces rod-like microglia and restricts neuronal activity in vivo. Cell Reports, 45 (2). p. 116926. ISSN 2211-1247 (Public Dataset)

Frimer, Marina, Gee, Devin, Goldstein, Zoe R, Hooper, WillIam F, Founta, Kyriaki, Deschenes, Astrid, Geiger, Heather, Belleau, Pascal, Kramer, Melissa, Yueh, Brian, Chu, Tim, Oku, Ali, Vaksman, Zalman, Grether, Valentina, Steinsnyder, Zoe, Araneo, Andrew L, Chung, Charlie, Kapedani, Arisa, Nizam, Aaron, Eskiocak, Onur, Ozler, Kadir, Goldberg, Gary L, Krasnitz, Alexander, McCombie, WR, Barbi, Mali, Winterkorn, Lara, Robine, Nicolas, Beyaz, Semir, Chambwe, Nyasha (May 2026) Comprehensive Molecular Characterization of High-Grade Endometrial Cancer in an Ancestrally-Diverse Cohort. bioRxiv. ISSN 2692-8205 (Submitted)

Furukawa, Hiro (January 2026) Subtype-selective targeting of NMDA receptors-A potent new compound emerges. The Journal of General Physiology, 158 (1). ISSN 0022-1295

Gann, Alexander (February 2026) James D. Watson (1928-2025). Current Biology, 36 (4). R107-R115. ISSN 0960-9822

Garg, Ankur, Braviner, Leah, Axhemi, Armend, Bibel, Brianna, Joshua-Tor, Leemor (March 2026) Structural dynamics between Argonaute-2 and CK1α promote target RNA release in microRNA-mediated silencing. bioRxiv. ISSN 2692-8205 (Submitted)

Gaur, Mohita, Brooks, Matthew J, Liang, Xulong, Jiang, Ke, Kumari, Anjani, English, Milton A, Cifani, Paolo, Panepinto, Maria C, Nellissery, Jacob, Fariss, Robert N, Campello, Laura, Marchal, Claire, Swaroop, Anand (April 2026) Lactate and histone H3K18 lactylation are associated with metabolic control of gene expression in the retina. PLoS Genetics, 22 (4). e1012100. ISSN 1553-7404

Gladman, Nicholas, Olson, Andrew, Kumari, Sunita, Wei, Sharon, Chougule, Kapeel, Lu, Zhenyuan, Tello-Ruiz, Marcela K, Van Buren, Peter, Kumar, Vivek, Zhang, Lifang, Olson, Audra, Kim, Catherine, Braynen, Janeen, Hayes, Chad, Xin, Zhanguo, Klein, Robert, Rooney, William, Provart, Nicholas, Pasha, Asher, O'Meara, Abigail, Shakoor, Nadia, Michael, Todd P, Harrison, Melanie, Ware, Doreen (January 2026) SorghumBase: a knowledgebase for sorghum genomics, phenomics, and stakeholder engagement. Genetics. iyaf266. ISSN 0016-6731

Han, Lijie, Gan, Lina, Schäfer, Balázs, Voss, Dillon M, Danielsen, Mathias, Kostov, Ondrej, Liu, Jia, Wang, Ting, Caruthers, Marvin H, Chen, Hao, Krainer, Adrian R (April 2026) ASO-based PKM splice-switching therapy increases anti-CTLA-4 antibody efficacy in pancreatic ductal adenocarcinoma. Cell Discovery, 12 (1). ISSN 2056-5968 (Public Dataset)

Hebron, Katie E, Odeniyide, Patience, Wei, Yun, Gryder, Berkley E, Barr, Frederic G, Casey, Dana L, Chen, Eleanor Y, Crompton, Brian D, Dela Cruz, Filemon S, Durbin, Adam D, Ford, Heide L, Gatz, Susanne A, Hatley, Mark E, Henssen, Anton G, Hettmer, Simone, Houghton, Peter J, Kendall, Genevieve C, Khan, Javed, Lupo, Philip J, Patel, Anand G, Pomella, Silvia, Rota, Rossella, Schito, Marco, Schoot, Reineke A, Shern, Jack F, Stanton, Benjamin Z, Stewart, Elizabeth A, Swindlehurst, Cathy A, Thomas, Craig J, Vakoc, Christopher R, Vaseva, Angelina V, Venkatramani, Rajkumar, Wexler, Leonard H, Yustein, Jason T, Hammond, Sharon, Heske, Christine M, Langenau, David M, Linardic, Corinne M, Ignatius, Myron S, Yohe, Marielle E (March 2026) Biological Advances and Current Challenges for Pediatric Rhabdomyosarcoma. Cancers, 18 (6). p. 888. ISSN 2072-6694

Henry, Gilbert L, Zador, Anthony M (April 2026) Synaptic connectomics by sequencing. Nature Methods. ISSN 1548-7091

Hu, Mengying, Liu, Di-Ao, Wortzel, Inbal, Collier, Paul, Nelson, Theodore M, Foox, Jonathan, Zhong, Guojie, Tobias, Gabriel, Asao, Tetsuhiko, Bojmar, Linda, Kenific, Candia M, Wang, Gang, Caielli, Simone, Wan, Zurong, Qureshy, Sarah, Reed, Max, Piszczatowski, Richard, Ravisankar, Purnima, Brown, Julia A, Xiong, Sihan, Wang, Huajuan, Lauritzen, Pernille, Aylon, Yael, Molina, Henrik, Jarnagin, William R, Oren, Moshe, Stanger, Ben Z, Bui, Jack, Bergers, Gabriele, Noël, Agnès, Grandgenett, Paul M, Hollingsworth, Michael A, Tuveson, David, Boudreau, Nancy, Bromberg, Jacqueline, Kelsen, David, Jones, David R, Santambrogio, Laura, Zeng, Melody Y, Pascual, Virginia, Kim, Han Sang, Mason, Christopher E, Zhang, Haiying, Matei, Irina R, Lyden, David (April 2026) Activated T cell extracellular vesicle DNA transfer enhances antigen presentation and anti-tumor immunity. Cancer Cell. S1535-6108(26)00177. ISSN 1535-6108

Huang, Jing, Zhu, Xin-Hua, Trotman, Lloyd C, Tsao, Che-Kai (March 2026) The Role of Gut Microbiome in Prostate Cancer: Current Evidence and Emerging Opportunities. Cancers, 18 (6). p. 998. ISSN 2072-6694

Iohannes, Sessen Daniel, Shanmugaraj, Nandhakumar, Jackson, David (May 2026) Quantitative Imaging of RNA in Plants Using Hybridization Chain Reaction-RNA Fluorescence in Situ Hybridization (HCR RNA-FISH). Current Protocols, 6 (5). e70382. ISSN 2691-1299

Isko, Emily C, Harpole, Clifford E, Zheng, Xiaoyue Mike, Zhan, Huiqing, Davis, Martin B, Zador, Anthony M, Banerjee, Arkarup (May 2026) Specific expansion of motor cortical projections in a singing mouse. Nature. ISSN 0028-0836 (Public Dataset)

Kaczmarzyk, Jakub R, Van Alsten, Sarah C, Cozzo, Alyssa J, Gupta, Rajarsi, Koo, Peter K, Troester, Melissa A, Hoadley, Katherine A, Saltz, Joel H (January 2026) Towards interpretable prediction of recurrence risk in breast cancer using pathology foundation models. npj Digital Medicine. ISSN 2398-6352

Karakaya, Eda, Berber, Burak, Eskiocak, Onur, Edwards, Jazlyn, Barker, Randy Bent, Jamil, Sarah, Li, Weiguo, Abdul, Yasir, Ericsson, Maria, Stein, Thor, McKee, Ann, Ergul, Adviye, Beyaz, Semir, Albayram, Onder (March 2026) Eicosapentaenoic acid reprograms cerebrovascular metabolism and impairs repair after brain injury, with relevance to chronic traumatic encephalopathy. Cell Reports, 45 (4). p. 117135. ISSN 2211-1247

Kempen, Cody G, Singh, Ankita, Breau, Keith A, Tariq, Hafiz I, Yu, Yangle, Gaudino, Stephen J, Bahadur, Tej, Orzechowska-Licari, Emilia, Eskiocak, Onur, Shiomitsu, Kiyoshi, Blumberg, Richard, Denoya, Paula, Martin, Rebecca, Bialkowska, Agnieszka B, Beyaz, Semir, Magness, Scott T, Hearing, Patrick, Kim, Hwan Keun, Sheridan, Brian S, Dempsey, Peter, Kumar, Pawan (March 2026) IL-17RA signaling promotes the dedifferentiation of Paneth progenitors through ADAM17 to regenerate gut epithelium post-irradiation. Nature Communications. ISSN 2041-1723

Kerstjens, Stan, Engert, Florian, Douglas, Rodney J, Zador, Anthony M (March 2026) A lineage-based model of scalable positional information in vertebrate brain development. Neuron. S0896-6273(25)01000. ISSN 0896-6273

Kim, Jaekyoon, Vanrobaeys, Yann, Rajan, Remya, Davatolhagh, M Felicia, Kelvington, Benjamin, Chatterjee, Snehajyoti, Ferri, Sarah L, Angelakos, Christopher, Mills, Alea A, Fuccillo, Marc V, Blackwell, Kim T, Nickl-Jockschat, Thomas, Abel, Ted (January 2026) A chromosome region linked to neurodevelopmental disorders influences locomotor behavior through sex-specific neural circuits. Nature Communications, 17 (1). p. 107. ISSN 2041-1723

King, Daniel A, John, Kristen M, Tenner, Joseph, Nadella, Sandeep, Zavadsky, Tiffany, Carvino, Anthony, Khan, Shama, Croocks, Rolando, McEvoy, Tara, Beyer, Kristen, Mercieca, Rita, Valente, Cristina, Bingham, Bernadette, Cohn, Elizabeth G, Habowski, Amber N, Tuveson, David A, Barish, Matthew A, Carvajal, Richard (February 2026) Computationally Assisted Patient Finding for Navigation to Optimize Pancreatic Cancer Care Access. Oncologist. oyag037. ISSN 1083-7159

Kleeman, Sam O, Michalski, Kevin, Zhao, Xiang, Steigerwald, Ruben, Ferrer, Miriam, Levett, Llewelyn, Ertel, Ethan, Schultz, Austin, Simorowski, Noriko, Moody, Pamela, Wee, Tse-Luen, Valente, Cristina, Fox, Sharon, Makuch, Mateusz, Thomsen, Selina, Harrison, Ruby, Regan, Claire, Preall, Jonathan, Gao, Qing, Thomas, Dennis, Habel, Jill, Rubino, Rachel, Irani, Sarosh, Furukawa, Hiro, Janowitz, Tobias (March 2026) Ectopic NMDAR expression in cancer unmasks germline-encoded autoimmunity. Nature. ISSN 0028-0836 (Public Dataset)

Kouassi, Fatim M, Patel, Hardik, Karnoub, Elias-Ramzey, Tsang, Caitlin F, Hohenleitner, Julien, Basturk, Olca, Budagavi, Deepthi, Moza, Madonna, Balogun, Fiyinfolu, Habowski, Amber N, Tuveson, David A, Yu, Kenneth H (April 2026) Brain metastasis from KRAS wild-type pancreatic cancer and organoid correlates: a case report. Journal of Gastrointestinal Oncology, 17 (2). p. 101. ISSN 2078-6891

Kramer, Melissa, Belleau, Pascal, Tortora, Sofia C, Deschenes, Astrid, Founta, Kyriaki, Gurjao, Carino, Yueh, Brian, Goodwin, Sara, Gee, Devin, Subhash, Santhilal, Barbi, Mali, Chung, Charlie, Ozler, Kadir, Eskiocak, Onur, Izar, Benjamin, Geiger, Heather, Chu, Timothy R, Goldstein, Zoe, Winterkorn, Lara, Araneo, Andrew, Whelan, Richard L, Rivadeneira, David, Fox, Sharon, Kandel, Arjun, Ozay, Fatih, Talabong, Desiree Joy Anne, Lanipekun, Olalekan, Talus, Henry, Zeng, Jianying, Rishi, Arvind, Chambwe, Nyasha, Robine, Nicolas, Boyd, Jeff, Krasnitz, Alexander, Beyaz, Semir, McCombie, W Richard, Martello, Laura A (March 2026) Integrative Genomic, Transcriptomic, and Microbiome Profiles of Colon Cancer by Ancestry Provide Insights into Molecular Distinctions. medRxiv. (Submitted)

Labourel, Florian JF, Bansept, Florence, McCandlish, David M (January 2026) Weakest link epistasis and the geometry of genetic load. bioRxiv. ISSN 2692-8205 (Submitted)

Lei, Xinyuan, Yu, Yangle, Chung, Charlie, Qiu, Zhijuan, Zhang, Yue, Chu, Timothy H, Li, Xinran, Yang, Rin, Ozler, Khadir A, Burgac, Mami, Westcott, Peter MK, Beyaz, Semir, Sheridan, Brian S (February 2026) Oral immunization with Listeria monocytogenes vaccine enhances immunotherapy for protective immunity in murine models of colorectal cancer. Journal for ImmunoTherapy of Cancer, 14 (2). e011570-e011570. ISSN 2051-1426

Li, Li, Tonks, Nicholas K (March 2026) The dual-specificity phosphatase JSP1 regulates neutrophil adhesion via integrin-SRC signaling in vascular inflammation. Journal of Biological Chemistry, 302 (5). p. 111369. ISSN 0021-9258

Li, Nan, Ning, Qiang, Li, Zhen, Zhang, Qian, Zhu, Peilu, Zhan, Jimin, Li, Yunfu, Li, Zhen, Dong, Liang, Xiong, Qing, Liao, Jiahao, Liu, Jie, Jackson, David, Kitagawa, Munenori, Zhang, Zuxin, Liu, Lei (January 2026) A Trypsin-Like Serine Protease ZmNAL1a Fine-Tunes Maize Floral Transition and Flowering Time. Advanced Science. e14635. ISSN 2198-3844

Li, Ying, Patrick, Ryan M, Peacock, Charles, Koenigsfeld, Leo, Rock, Tara M, Bouguyon, Eleonore, Kuhn, Emily, Albert, MarySara, Varala, Kranthi, McCombie, W Richard, Cheng, Chia-Yi, Ruffel, Sandrine, Coruzzi, Gloria (March 2026) Uncovering the early and conserved molecular mechanisms of root nitrogen foraging in model and crops. BMC Genomics, 27 (1). p. 384. ISSN 1471-2164

Lin, Qianyu, Kang, Chris, Xavier, Andre M, Sanchez-Martin, Irene, Mehta, Ashesh D, Cheadle, Lucas (February 2026) Deciphering epileptogenic and activity-dependent gene programs in the human brain. bioRxiv. ISSN 2692-8205 (Submitted)

Lindsay, Penelope L, Xu, Fang, Liu, Lei, Boumpas, Panagiotis, Reyes, Andres, Je, Byoung-Il, Ogawa-Ohnishi, Mari, Man, Jarrett, Skopelitis, Tara, Matsubayashi, Yoshikatsu, Bartlett, Madelaine, Xu, Shou-Ling, Jackson, David (January 2026) Antagonistic interactions between CLAVATA receptors shape maize ear development. New Phytologist. ISSN 0028-646X (Public Dataset)

Liu, Xiao, Wang, Jinbiao, Li, Jipeng, Kang, Lu, Wang, Mengyan, Huang, Zhaoyu, Man, Jarrett, Huang, Xuxu, Zhang, Zhiming, Yang, Fang, Bartlett, Madelaine, Wu, Liuji, Dong, Zhaobin, Jackson, David, Xu, Fang (January 2026) ERECTA genes and their ligands regulate shoot and inflorescence architecture in maize. Nature Communications, 17 (1). p. 110. ISSN 2041-1723 (Public Dataset)

Martí-Gómez, Carlos, Zhou, Juannan, Chen, Wei-Chia, Stoltzfus, Arlin, Kinney, Justin B, McCandlish, David M (February 2026) Inference and visualization of complex genotype-phenotype maps. Molecular Biology and Evolution (MBE). ISSN 0737-4038

Murphy, Alan E, Nagai, Masayuki, Koo, Peter K (April 2026) Predicting non-coding variant effects with AlphaGenome. Cell Research. ISSN 1748-7838

Natali, Lautaro, de la Cruz-Thea, Benjamín, Godino, Andrea, Conde, Cecilia, Peinado, Victor I, Musri, Melina M (January 2026) A Comprehensive Review of Epigenetic Regulation of Vascular Smooth Muscle Cells During Development and Disease. Biomolecules, 16 (1). p. 173. ISSN 2218-273X

Nigri, Jérémy, Lan, Wenjun, Fung, Melanie L, Kayser, Charlotte, Deschênes, Astrid, Hinds, Juliene, Kaushalya, Sanjeev, Pawlak, Sara A, Thalappillil, Jennifer S, Nadella, Sandeep, Hilmi, Marc, Park, Wungki, Kappagantula, Rajya, Park, Youngkyu, Zhao, Zhen, Preall, Jonathan, Iacobuzio-Donahue, Christine A, Tracey, Kevin J, Borniger, Jeremy C, Tuveson, David A (February 2026) Myofibroblasts induce neuroplasticity to promote pancreatic inflammation and cancer progression. Cancer Discovery. ISSN 2159-8274 (Public Dataset)

Ntita, Mbaya, Kong, Celine Shuet Lin, Hassan, Dalia, Nayak, Richa, García, Jezreel Pantaleón, Wang, Yongxing, Chen, Jichao, Evans, Scott E (April 2026) Prophylactic Inhaled Pattern Recognition Receptor Agonists Reprogram Lung Epithelial Response and Prevent Type 2 Allergic Inflammation. European Journal of Immunology, 56 (4). e70172. ISSN 0014-2980

Panneer Selvam, Chermakani, Thacker, Gatha, Kim, Ukjin, Tjendra, Youley, Boone, Melinda M, Henry, Samantha, Dos Santos, Camila O, Chakrabarti, Rumela (March 2026) KRT17 promotes triple negative breast cancer through activation of Wnt signaling and γδ T-cells recruitment. Communications Biology. ISSN 2399-3642

Petti, Samantha, Martí-Gómez, Carlos, Kinney, Justin B, Zhou, Juannan, McCandlish, David M (April 2026) On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing. Journal of Mathematical Biology, 92 (5). ISSN 1432-1416

Rahman, Sadia N, Neophytou, Demetrios, Oviedo-Gray, Siboney, Vuong, Bao Q, Oviedo, Hysell V (February 2026) Non-canonical role of DNA mismatch repair on sensory processing in mice. Neuroscience, 595. pp. 59-72. ISSN 0306-4522

Rai, Nilesh, Abdel-Wahab, Omar, Zhang, Lingbo (May 2026) Molecular and therapeutic frontiers in anemia therapy. Journal of Clinical Investigation, 136 (10). ISSN 1558-8238

Ren, Diqiu, Wang, Shangshang, Yamada, Keisuke, Liu, Yuqiao, Hapke, Robert, Alpsoy, Aktan, Ho, Yugong, Zhang, Canjing, Lan, Yemin, Zhang, Shuo, Milazzo, Joseph P, Lohia, Ruchi, Berríos, Kiara N, Li, Yongjun, Weber, Evan W, Li, Qin, Vakoc, Christopher R, Minn, Andy J, Kohli, Rahul M, Shi, Junwei (April 2026) Inducible, split base editors for in vivo cancer functional genomics. Nature Biotechnology. ISSN 1087-0156 (Public Dataset)

Reyes, José, Del Priore, Isabella, Chaikovsky, Andrea C, Pasnuri, Nikhita, Elhossiny, Ahmed M, Park, Jin, Weiler, Philipp, Krause, Tobias, Moorman, Andrew, Snopkowski, Catherine, Takizawa, Meril, Burdziak, Cassandra, Ratnayeke, Nalin, Masilionis, Ignas, Ho, Yu-Jui, Chaligné, Ronan, Romesser, Paul B, Filliol, Aveline, Nawy, Tal, Morris, John P, Zhao, Zhen, Pasca Di Magliano, Marina, Alonso-Curbelo, Direna, Pe'er, Dana, Lowe, Scott W (May 2026) Oncogenic and tumor-suppressive forces converge on a progenitor niche at the benign-to-malignant transition. Cell, 189 (10). 2875-2897.e53. ISSN 0092-8674

Salehi, Saeed, Lei, Jordan, Benjamin, Ari S, Muller, Klaus-Robert, Kording, Konrad P (May 2026) Modeling attention and binding in the brain through bidirectional recurrent gating. Nature Communications, 17 (1). ISSN 2041-1723 (Public Dataset)

Sanchez-Martin, Irene, Kukreja, Bharti, Henderson, Paige, Lin, Qianyu, DiMartino, Daniel, Bagan, Valerie, Park, Justin, Kalish, Brian T, Cheadle, Lucas (February 2026) Maternal-fetal immune conflict contributes to male-specific impairments in a mouse model of neurodevelopmental disorders. bioRxiv. ISSN 2692-8205 (Public Dataset) (Submitted)

Santarossa, Cristina C, Li, Yupeng, Yousef, Sara, Hasdemir, Hale S, Rodriguez, Carlos C, Haase, Max AB, Baek, Minkyung, Coudray, Nicolas, Pavek, John G, Focke, Kimber N, Silverberg, Annika L, Bautista, Carmelita, Yeh, Johannes T-H, Marty, Michael T, Baker, David, Tajkhorshid, Emad, Ekiert, Damian C, Bhabha, Gira (January 2026) LetA defines a structurally distinct transporter family. Nature. ISSN 0028-0836 (Public Dataset)

Schilder, Brian M, Liu, Zhihan, Desmarais, John J, Laub, David, Rahimi, Fahimeh, Sethi, Palash, Pereira, Lucas A, Sun, Mengyi, Kinney, Justin B, McCandlish, David M, Zhou, Juannan, Koo, Peter K (April 2026) Genetic background shapes AI-predicted variant effects. bioRxiv. ISSN 2692-8205 (Submitted)

Schukken, Klaske M, Akalu, Saron M, Zou, Charles, Kandikuppa, Pranav K, Hagenson, Ryan A, Keane, Jessica L, Lynch, Mason P, Yoshimoto, Toyoki, Klingbeil, Olaf, Sausville, Erin L, Mishra, Sanat, Vakoc, Christopher R, Storchova, Zuzana, Aitken, Sarah J, Sheltzer, Jason M (April 2026) Paired CRISPR screens identify mitochondrial metabolism and UBE2H as aneuploid-specific dependencies in human cancer cell lines. bioRxiv. ISSN 2692-8205 (Submitted)

Sever, Richard (January 2026) The Story behind the Science: Preprints of pandemic potential-how bioRxiv and medRxiv brought preprints to the life sciences. mBio. e0298925. ISSN 2150-7511

Shohat, Hagai, Ciren, Danielle, Arrones, Andrea, Gentile, Iacopo, Ramakrishnan, Srividya, Hendelman, Anat, Jenike, Katharine M, Brown, Nicole L, Luna-Ramos, Jose, Passalacqua, Michael J, Satterlee, James W, Fitzgerald, Blaine, Baraja-Fonseca, Virginia, Robitaille, Gina M, Seman, Brooke M, Gillis, Jesse, Van Eck, Joyce, Prohens, Jaime, Schatz, Michael C, Lippman, Zachary B (February 2026) A neofunctionalized flowering antagonist created an evolutionary contingency that channeled Solanaceae adaptation. bioRxiv. ISSN 2692-8205 (Submitted)

Siepel, Adam, Hassett, Rebecca, Staklinski, Stephen J (March 2026) VINE: Variational inference for scalable Bayesian reconstruction of species and cell-lineage phylogenies. bioRxiv. ISSN 2692-8205 (Submitted)

Steigerwald, Ruben, Epstein, Max, Chou, Tsung-Han, Simorowski, Noriko, Furukawa, Hiro (May 2026) Molecular mechanism of calcium permeability and magnesium block in NMDA receptors. Nature Neuroscience. ISSN 1097-6256 (Public Dataset)

Subhash, Santhilal, Bammert, Marie-Thérèse, Yueh, Brian, Chu, Timothy, Barbi, Mali, Alici, Aybuke, Eskiocak, Onur, Ozler, Kadir A, Nizam, Aaron, Katcher, Arielle, Chung, Charlie, Shah, Vyom, Ozcelik, Elif, Robine, Nicolas, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (April 2026) A Single-Cell Atlas of Uterine Carcinosarcoma from Diverse Ancestries. bioRxiv. ISSN 2692-8205 (Submitted)

Sun, Simón ED, Tollkuhn, Jessica (March 2026) Sex Hormone Control of Neurophysiology and Behavior. Annual Review of Neuroscience. ISSN 0147-006X

Tollkuhn, Jessica, Breedlove, S Marc (April 2026) Express yourself. Science, 392 (6795). pp. 251-252. ISSN 0036-8075

Tsang, Caitlin F, Patel, Hardik, Kouassi, Fatim M, Khandakar, Binny, St Surin, Luce G, Rouse, James A, Utama, Raditya, Budagavi, Deepthi, Hohenleitner, Julien T, Chunton, Adeline, Zhao, Zhen, Fox, Sharon S, Valente, Cristina C, Weiss, Matthew J, Rishi, Arvind, King, Daniel A, Crawford, James M, Habowski, Amber N, Tuveson, David A (January 2026) Utility of pancreatic tumor scrapings for organoid development and precision medicine strategies. Journal of Pathology. ISSN 0022-3417 (Public Dataset)

Van Camp, Andrew G, Park, Jiwoon, Ozcelik, Elif, Eskiocak, Onur, Ozler, Kadir A, Papciak, Katie, Subhash, Santhilal, Alwaseem, Hanan, Ergin, Ilgin, Chung, Charlie, Shah, Vyom, Yueh, Brian, Fein, Miriam R, Durmaz, Ceyda, Mozsary, Chris, Kilic, Ece, Garipcan, Aybuke, Damle, Namita, Najjar, Deena, Nelson, Theodore M, Ryon, Krista A, Butler, Daniel J, Patel, Chirag J, Thaiss, Christoph A, Birsoy, Kivanc, Mason, Christopher E, Meydan, Cem, Tierney, Braden T, Beyaz, Semir (March 2026) Diverse high-fat diets drive multi-omic reprogramming that persists after dietary reversal. bioRxiv. ISSN 2692-8205 (Submitted)

Wen, Emma, Vera, Catalina, Kesavan, Sahaana, Kouassi, Fatim, LaComb, Joseph F, Zand, Neecki, Tuveson, David A, Habowski, Amber N, Baines, Antonio T, Bialkowska, Agnieszka B (February 2026) AUM-302, a novel triple PIM/PI3K/mTOR inhibitor, synergizes with RAS inhibition and impedes the growth of pancreatic ductal adenocarcinoma spheroids and organoids. Frontiers in Pharmacology, 17. p. 1685433. ISSN 1663-9812

Witkowski, Jan, Stillman, Bruce (February 2026) James D. Watson (1928-2025): Influencer of science and society. Proceedings of the National Academy of Sciences of the United States of America, 123 (7). e2600779123. ISSN 0027-8424

Wu, Peipei, Wang, Jing, Pryor, Brett, Valentino, Isabella, Ritter, David F, Loel, Kaiser, Kinney, Justin, Ercan, Sevinc, Joshua-Tor, Leemor, Hammell, Christopher M (January 2026) A developmental timer coordinates organism-wide microRNA transcription. bioRxiv. ISSN 2692-8205 (Submitted)

Wu, Peipei, Wang, Jing, Pryor, Brett, Valentino, Isabella, Ritter, David F, Loel, Kaiser, Yarychkivska, Olya, Shaham, Shai, Kinney, Justin, Ercan, Sevinc, Joshua-Tor, Leemor, Hammell, Christopher M (May 2026) A molecular timer couples organism-wide temporal identity to developmental checkpoints. Proceedings of the National Academy of Sciences of the United States of America, 123 (19). e2606846123. ISSN 0027-8424 (Public Dataset)

Yang, Lucia, Zhang, Qian, Wilkinson, John E, Krainer, Adrian R (April 2026) Exon-Skipping Antisense Oligonucleotides for H3.3K27M-Altered Diffuse Midline Glioma Therapy. bioRxiv. ISSN 2692-8205 (Submitted)

Yoshida, Masahiro, Furuyama, Kenichiro, Sumide, Keisuke, Horiguchi, Masashi, Abo-Ahmed, Ahmed I, Shibata, Hirofumi, Tanaka, Akito, Rashwan, Ahmed M, Masui, Toshihiko, Alev, Cantas, Yamamoto, Takuya, Yamada, Yasuhiro, Kaneko, Shin, Narumiya, Shuh, Tuveson, David, Uemoto, Shinji, Hatano, Etsuro, Kawaguchi, Yoshiya (May 2026) Stress-induced CXCL13 regulates pancreatic exocrine homeostasis, age-related chronic inflammation, and cancer progression. Science Advances, 12 (18). eadu7865. ISSN 2375-2548 (Public Dataset)

Yu, Xiaofei, Lukey, Michael (February 2026) Career pathways, part 19. Nature Metabolism. ISSN 2522-5812

Zador, Anthony, Fellous, Jean-Marc, Sejnowski, Terrence, Adam, Gina, Aimone, James B, Akwaboah, Akwasi, Aloimonos, Yiannis, Alonso, Carmen Amo, Bartolozzi, Chiara, Bennington, Michael J, Berry, Michael, Brunton, Bing W, Cauwenberghs, Gert, Chiel, Hillel J, Delbruck, Tobi, Doyle, John, Eshraghian, Jason, Etienne-Cummings, Ralph, Fermuller, Cornelia, Jacobsen, Matthew, Minai, Ali A, Oakley, Barbara, Ororbia, Alexander G, Paton, Joe, Richards, Blake, Sandamirskaya, Yulia, Sengupta, Abhronil, Shamma, Shihab, Stryker, Michael P, Yoo, Seong Jong, Zucker, Steven W (April 2026) NeuroAI and Beyond: Bridging Between Advances in Neuroscience and Artificial Intelligence. arXiv. ISSN 2331-8422 (Submitted)

Zador, Anthony, Morrill, Todd, Pehle, Christian (February 2026) Bullet Trains: Parallelizing Training of Temporally Precise Spiking Neural Networks. arXiv. ISSN 2331-8422 (Submitted)

Zhang, Yuqing, Nipp, Ryan D, Janowitz, Tobias, Li, Yi-Ping, Guttridge, Denis C, Li, Min (April 2026) Cancer cachexia: A tumor-driven disorder of whole-body homeostasis. Cancer Cell. S1535-6108(26)00166. ISSN 1535-6108

Zhang, Zeda, Ho, Yu-Jui, Fang, Xin, Kim, Minseo, Li, Marguerite, Luan, Wei, Hinterleitner, Clemens, Haubner, Sascha, Kogel, Friederike, Pratt, Edwin C, Ozcelik, Elif, Reyes, José, Jiang, Qingwen, Yang, Vincent W, Chen, Yu-Jung, Wang, Tao, Liu, Haijiao, Hu, Haonan, Zhuang, Xueqian, Park, Jin, Paffenholz, Stella V, Chen, Kevin, Chang, Qing, Kulick, Amanda, Zhang, Jing, Chan, Eric, Rosiek, Eric, Fan, Ning, Williams, Riley A, Wang, Adam C, Freeman, Samuel, Tian, Sha, Gunset, Gertrude, Garcia Angus, Andreina, Lecomte, Nicolas, Yildirim, Selma Yeni, Ali, Emily, Wu, Michelle, Miranda, Ileana C, Antonescu, Cristina R, Basturk, Olca, Tarcan, Zeynep, Rekhtman, Natasha, Wilson, Christina, Basar, Merve, Sauter, Jennifer L, Al-Ahmadie, Hikmat A, Singer, Samuel, Iacobuzio-Donahue, Christine, Rudin, Charles, de Stanchina, Elisa, Ganesh, Karuna, Romesser, Paul B, Weigelt, Britta, Huh, Dan Dongeun, Leibold, Josef, Feucht, Judith, Vázquez-García, Ignacio, Bott, Matthew J, Zamarin, Dmitriy, Shah, Sohrab P, Lewis, Jason S, Amor, Corina, Pe'er, Dana, Mansilla-Soto, Jorge, Filliol, Aveline, Sadelain, Michel, Lowe, Scott W (March 2026) A convergent uPAR-positive tumor ecosystem creates broad vulnerability to CAR T cell therapy. Cell, 189 (10). 2898-2917.e42. ISSN 0092-8674

Zheng, CiCi Xingyu, Palit, Shirsa, Venezia, Matthew, Blum, Elijah, Pedmale, Ullas V, Jackson, Dave, Scarpella, Enrico, Prusinkiewicz, Przemyslaw, Navlakha, Saket (May 2026) Reticulate leaf venation in Pilea peperomioides is a Voronoi diagram. Nature Communications, 17 (1). p. 4111. ISSN 2041-1723

Zheng, CiCi Xingyu, Yu, Bin, Navlakha, Saket, Koulakov, Alexei (January 2026) How the olfactory bulb maintains stable odor manifolds amid adaptation and representational drift. bioRxiv. ISSN 2692-8205 (Submitted)

Zhou, Jessica, Rizzo, Kaeli, Christensen, Trevor, Tang, Ziqi, Koo, Peter K (2026) Uncertainty-aware genomic deep learning with knowledge distillation. npj Artificial Intelligence, 2 (1). p. 3. ISSN 3005-1460 (Public Dataset)

Zhou, Jiaqi, Yang, Chiu-Ling, Beckles, Diane M (March 2026) Fine-tuning RIPENING INHIBITOR (RIN) expression by introducing allelic mutations in its promoter using CRISPR/Cas9 multiplex editing. Mol Hortic, 6 (1). p. 17. ISSN 2730-9401

Conference or Workshop Item

Barbi, Mali, Gupta, Shalini, Subhash, Santhilal, Gowthaman, Divya, Katcher, Arielle, Gorman, Megan, Yueh, Brian, Akyildiz, Erdogan, Mahesh, Uma, Gee, Devin, Chambwe, Nyasha, Chung, Charlie, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (April 2026) A comprehensive endometrial cancer organoid biobank reveals subtype-specific transcriptional programs and therapeutic targets. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Decker-Farrell, Amanda R, Sastra, Stephen A, Harimoto, Tetsuhiro, Hasselluhn, Marie C, Palermo, Carmine F, Dalton, Tanner C, Levett, Llewelyn, Ballister, Edward R, Badgley, Michael A, Janowitz, Tobias, Danino, Tal, Olive, Kenneth P (April 2026) Tumor-selective treatment of metastatic pancreatic cancer with an engineered, probiotic living drug. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Gazzara, Emma, Jose, Adrover, Dziadowicz, Sebastian, Han, Song, Liu, Alex, Aminzada, Zakeria, Bhandari, Nischal, Shirue, Venktesh, Shergill, Bhupinder, Curtis, Matthew, George, Steven C, Cicala, Alexander, Rishi, Arvind, Devoe, Craig, Huang, Hai, Weiss, Matthew, Lou, Emil, Tuveson, David A, Beyaz, Semir, Westcott, Peter Maxwell Kienitz, Egeblad, Mikala, Gholami, Sepideh (April 2026) Neutrophil extracellular trap inhibition mitigates tumor necrosis and metastasis in colorectal cancer. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Habowski, Amber N, Kouassi, Fatim, Patel, Hardik, Rouse, James, Tsang, Caitlin, Kelly, Luce, Plenker, Dennis, Jang, Gun Ho, Budagavi, Deepthi, O'Kane, Grainne, Utama, Raditya, Wilson, Julie, Dodd, Anna, Ramotar, Stephanie, Hohenleitner, Julien, Perez, Kimberly, Grant, Robert C, O'Reilly, Eileen M, Gallinger, Steven, Laheru, Dan A, Wolpin, Brian M, Aguirre, Andrew J, Yu, Kenneth H, Jaffee, Elizabeth M, Knox, Jennifer, King, Daniel A, Notta, Faiyaz, Tuveson, David A (April 2026) Human cancer models: From patient-derived systems to clinical translation. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Hohenleitner, Julien T, Standring, Oliver J, Habowski, Amber N, Hassan, Murtuza, Huang, Hai, Weiss, Matthew J, Devoe, Craig E, Gholami, Sepideh, Rishi, Arvind, King, Daniel A, Tuveson, David A, Whelan, Richard, Deperalta, Danielle K (April 2026) Pressurized intraperitoneal aerosolized chemotherapy (PIPAC) in patients with peritoneal-only metastasis from pancreatic ductal adenocarcinoma. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Mir, Sana, Namba, Hiroe, Stepic, Milena, Alexander, Kate (March 2026) Nuclear speckles in ccRCC. In: AACR Special Conference in Cancer Research: Innovations in Kidney Cancer Research: From Molecular Insights to Therapeutic Breakthroughs, 2026 Mar 13-16, Philadelphia, PA.

Nowak, Dawid G, Serio, Ryan N, Brault, Lise M, Gargiulo, Domenic V, Hassett, Rebecca, Chaffee, Ryan J, Staklinski, Stephen J, Lu, Billy, Siepel, Adam C (April 2026) Rb1 loss defines distinct migration histories in metastatic prostate cancer subtypes. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Standring, Oliver, Grossman, Joseph Elan, Chand, Dhan Sidhartha, Hornstein, Nicholas James, Devoe, Craig E, Levy, Anna Taran, Vitiello, Gerardo Antonio, Deperalta, Danielle, Weiss, Matthew John, Rahman, Husneara, Rishi, Arvind, Lobko, Igor Michael, Tuveson, David A, Westcott, Peter, Jonas, Oliver, Gholami, Sepideh (January 2026) First-in-human study of an implantable microdevice for personalized drug testing in colorectal liver metastases. In: 2026 ASCO Gastrointestinal Cancers Symposium.

Standring, Oliver, Hohenleithner, Julien, King, Daniel, Jonas, Oliver, Gholami, Sepideh, DePeralta, Danielle, Rishi, Arvind, Tuveson, David, Weiss, Matthew (2026) Pilot study of an implantable microdevice for in situ evaluation of drug response in patients with pancreatic cancer. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Thakir, Tuba Mansoor, Kleeman, Sam Oscar, González, Miriam Ferrer, Janowitz, Tobias (April 2026) A tumor-derived PTHrP-calcium axis drives cardiac dysfunction to connect cancer cachexia with mortality. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Ting, Hsiu-Chi, Kim, Sun Y, Gaeth, Victoria, Hinds, Juliene, Deschenes, Astrid, Habowski, Amber N, Smith, Peyton, Yoo, Heesang, Kouassi, Fatim, Jensen, Amanda, Forte, Julia, Portillo, Steven, Kastan, Jonathan, Sodir, Nicole M, Park, Youngkyu, King, Daniel A, Vakoc, Christopher R, Singh, Mallika, Tuveson, David A (2026) FYN antagonizes response to RAS inhibition in pancreatic ductal adenocarcinoma. In: AACR Special Conference in Cancer Research: RAS Oncogenesis and Therapeutics, 2026 Mar 5-8, Los Angeles, CA.

Tollkuhn, Jessica (2026) GENE REGULATION BY STEROID HORMONE RECEPTORS DEFINES SEX DIFFERENCES IN THE MOUSE BRAIN. In: 64th Annual Meeting of the American-College-of-Neuropsychopharmacology (ACNP), JAN 12-15, 2026, Nassau, BAHAMAS.

Wang, Alice, Janowitz, Tobias (April 2026) Apelin is a candidate driver for neuromuscular junction recovery from cancer cachexia. In: American Association for Cancer Research Annual Meeting 2026, 2026 Apr 17-22, San Diego, CA.

Other

Zador, Anthony (April 2026) Can AI do neuroscience without understanding? The Transmitter.