Items where Year is 2013

Paper

Abera, M., Sordella, R., Kazanietz, M. (April 2013) PKC alpha is implicated in epithelial to mesenchymal transition and erlotinib resistance in non-small cell lung carcinoma cells. Cancer Research, 73 (8 (Sup). p. 5261. ISSN 0008-5472

Aboukhalil, R., Fendler, B., Atwal, G. S. (January 2013) Kerfuffle: a web tool for multi-species gene colocalization analysis. BMC Bioinformatics, 14. ISSN 1471-2105

Anne, S. L., Govek, E. E., Ayrault, O., Kim, J. H., Zhu, X., Murphy, D. A., Van Aelst, L., Roussel, M. F., Hatten, M. E. (2013) WNT3 inhibits cerebellar granule neuron progenitor proliferation and medulloblastoma formation via MAPK activation. PLoS ONE, 8 (11). ISSN 19326203 (ISSN)

Arbiza, L., Gronau, I., Aksoy, B. A., Hubisz, M. J., Gulko, B., Keinan, A., Siepel, A. (July 2013) Genome-wide inference of natural selection on human transcription factor binding sites. Nat Genet, 45 (7). pp. 723-9. ISSN 1061-4036

Au, Joyce T, Kingham, T Peter, Jun, Kyonghwa, Haddad, Dana, Gholami, Sepideh, Mojica, Kelly, Monette, Sebastien, Ezell, Paula, Fong, Yuman (June 2013) Irreversible electroporation ablation of the liver can be detected with ultrasound B-mode and elastography. Surgery, 153 (6). pp. 787-793. ISSN 0039-6060

Au, Joyce T, Mittra, Arjun, Song, Tae Jin, Cavnar, Michael, Jun, Kyonghwa, Carson, Joshua, Gholami, Sepideh, Haddad, Dana, Gaujoux, Sebastien, Monette, Sebastien, Ezell, Paula, Wolchok, Jedd, Fong, Yuman (September 2013) Irreversible electroporation facilitates gene transfer of a GM-CSF plasmid with a local and systemic response. Surgery, 154 (3). pp. 496-503. ISSN 0039-6060

Awaad, Amani S, Al-Jaber, Nabilah A, Moses, John E, El-Meligy, Reham M, Zain, Mohamed E (January 2013) Antiulcerogenic activities of the extracts and isolated flavonoids of Euphorbia cuneata Vahl. Phytotherapy Research, 27 (1). pp. 126-130. ISSN 0951-418X

Ballouz, S., Liu, J. Y., George, R. A., Bains, N., Liu, A., Oti, M., Gaeta, B., Fatkin, D., Wouters, M. A. (August 2013) Gentrepid V2.0: a web server for candidate disease gene prediction. BMC Bioinformatics, 14. ISSN 1471-2105

Bardot, E. S., Valdes, V. J., Zhang, J., Perdigoto, C. N., Nicolis, S., Hearn, S. A., Silva, J. M., Ezhkova, E. (May 2013) Polycomb subunits Ezh1 and Ezh2 regulate the Merkel cell differentiation program in skin stem cells. Embo Journal, 32 (14). pp. 1990-2000. ISSN 02614189

Basu, Jayeeta, Srinivas, Kalyan V, Cheung, Stephanie K, Taniguchi, Hiroki, Huang, Z.  Josh, Siegelbaum, Steven A (September 2013) A Cortico-Hippocampal Learning Rule Shapes Inhibitory Microcircuit Activity to Enhance Hippocampal Information Flow. Neuron, 79 (6). pp. 1208-1221. ISSN 0896-6273

Batut, P., Gingeras, T. R. (2013) RAMPAGE: Promoter activity profiling by paired-end sequencing of 5'-complete cDNAs. Current Protocols in Molecular Biology (SUPPL). Unit25B. ISSN 19343639 (ISSN)

Batut, P. J., Dobin, A., Plessy, C., Carninci, P., Gingeras, T. R. (2013) High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res, 23 (1). pp. 169-180. ISSN 1549-5469 (Electronic)1088-9051 (Linking)

Belin, Laurence J, Ady, Justin W, Lewis, Christina, Marano, Drew, Gholami, Sepideh, Mojica, Kelly, Eveno, Clarisse, Longo, Valerie, Zanzonico, Pat B, Chen, Nanhai G, Szalay, Aladar A, Fong, Yuman (September 2013) An oncolytic vaccinia virus expressing the human sodium iodine symporter prolongs survival and facilitates SPECT/CT imaging in an orthotopic model of malignant pleural mesothelioma. Surgery, 154 (3). pp. 486-495. ISSN 0039-6060

Belousov, V. V., Enikolopov, G. N., Mishina, N. M. (July 2013) Compartmentalization of ROS-mediated signal transduction. Russian Journal of Bioorganic Chemistry, 39 (4). pp. 341-355. ISSN 10681620

Ben-Hur, V., Denichenko, P., Siegfried, Z., Maimon, A., Krainer, A., Davidson, B., Karni, R. (January 2013) S6K1 Alternative Splicing Modulates Its Oncogenic Activity and Regulates mTORC1. Cell Reports, 3 (1). pp. 103-115. ISSN 22111247

Berger, A. H., Chen, M., Morotti, A., Janas, J. A., Niki, M., Bronson, R. T., Taylor, B. S., Ladanyi, M., Van Aelst, L., Politi, K., Varmus, H. E., Pandolfi, P. P. (2013) DOK2 inhibits EGFR-mutated lung adenocarcinoma. PLoS One, 8 (11). e79526. ISSN 1932-6203

Berman, E., Girotra, M., Cheng, C., Chanel, S., Maki, R., Shelat, M., Strauss, H. W., Fleisher, M., Heller, G., Farooki, A. (July 2013) Effect of long term imatinib on bone in adults with chronic myelogenous leukemia and gastrointestinal stromal tumors. Leuk Res, 37 (7). pp. 790-4. ISSN 1873-5835 (Electronic)0145-2126 (Linking)

Beshel, J., Zhong, Y. (October 2013) Graded Encoding of Food Odor Value in the Drosophila Brain. Journal of Neuroscience, 33 (40). pp. 15693-15704. ISSN 0270-6474

Bhattacharjee, S., Osman, F., Feeney, L., Lorenz, A., Bryer, C., Whitby, M. C. (September 2013) MHF1-2/CENP-S-X performs distinct roles in centromere metabolism and genetic recombination. Open Biology, 3 (SEP). ISSN 20462441 (ISSN)

Bilan, D. S., Matlashov, M. E., Gorokhovatsky, A. Y., Schultz, C., Enikolopov, G. N., Belousov, V. V. (July 2013) Genetically encoded fluorescent indicator for NAD(+)/NADH ratio imaging in different cellular compartments. Febs Journal, 280 (S1). p. 615. ISSN 1742-464X

Birbrair, A., Zhang, T., Wang, Z. M., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (August 2013) Role of pericytes in skeletal muscle regeneration and fat accumulation. Stem Cells and Development, 22 (16). pp. 2298-2314. ISSN 15473287

Birbrair, A., Zhang, T., Wang, Z. M., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (January 2013) Skeletal muscle pericyte subtypes differ in their differentiation potential. Stem Cell Research, 10 (1). pp. 67-84. ISSN 1873-5061

Bodnar, M. S., Spector, D. L. (June 2013) Chromatin Meets Its Organizers. Cell, 153 (6). pp. 1187-1189. ISSN 0092-8674

Boettner, B., Van Aelst, L. (September 2013) Introduction to the ECR special issue on the roles of small GTPases. Experimental Cell Research, 319 (15). p. 2309. ISSN 00144827

Boivin, B., Chaudhary, F., Dickinson, B. C., Haque, A., Pero, S. C., Chang, C. J., Tonks, N. K. (November 2013) Receptor protein-tyrosine phosphatase α regulates focal adhesion kinase phosphorylation and ErbB2 oncoprotein mediated mammary epithelial cell motility. Journal of Biological Chemistry, 288 (52). pp. 36926-36935. ISSN 00219258 (ISSN)

Bommert, P., Je, B. I., Goldshmidt, A., Jackson, D. (September 2013) The maize G alpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size. Nature, 502 (7472). pp. 555-558. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Bommert, P., Nagasawa, N. S., Jackson, D. (March 2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036

Borges, F., Calarco, J. P., Martienssen, R. A. (2013) Reprogramming the Epigenome in Arabidopsis Pollen. Cold Spring Harbor Symposia on Quantitative Biology, 77. pp. 1-5. ISSN 00917451 (ISSN)

Borges, F., Martienssen, R. A. (April 2013) Establishing epigenetic variation during genome reprogramming. RNA Biology, 10 (4). pp. 490-4. ISSN 1555-8584 (Electronic)1547-6286 (Linking)

Borniger, J. C., Chaudhry, A., Muehlenbein, M. P. (2013) Relationships among musical aptitude, digit ratio and testosterone in men and women. PLoS One, 8 (3). e57637. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Borniger, J. C., Weil, Z. M., Zhang, N., Nelson, R. J. (October 2013) Dim light at night does not disrupt timing or quality of sleep in mice. Chronobiol Int, 30 (8). pp. 1016-23. ISSN 1525-6073 (Electronic)0742-0528 (Linking)

Borreguero, Ana M, Sharma, Pallavi, Spiteri, Christian, Velencoso, Maria M, Carmona, Manuel S, Moses, John E, Rodriguez, Juan F (September 2013) A novel click-chemistry approach to flame retardant polyurethanes. Reactive and Functional Polymers, 73 (9). pp. 1207-1212. ISSN 1381-5148

Boyd, J., Luo, B., Peri, S., Wirchansky, B., Hughes, L., Forsythe, C., Wu, H. (2013) Whole exome sequence analysis of serous borderline tumors of the ovary. Gynecologic Oncology, 130 (3). pp. 560-564. ISSN 00908258

Boyle, B., Hopkins, N., Lu, Z. Y., Garay, J. A. R., Mozzherin, D., Rees, T., Matasci, N., Narro, M. L., Piel, W. H., McKay, S. J., Lowry, S., Freeland, C., Peet, R. K., Enquist, B. J. (January 2013) The taxonomic name resolution service: an online tool for automated standardization of plant names. BMC Bioinformatics, 14. ISSN 1471-2105

Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, İnanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Fabbro, Cristian Del, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Vieira, Bruno Miguel, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F (January 2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience. (Submitted)

Bradnam, K. R., Fass, J. N., Alexandrov, A., Baranay, P., Bechner, M., Birol, I., Boisvert, S., Chapman, J. A., Chapuis, G., Chikhi, R., Chitsaz, H., Chou, W. C., Corbeil, J., Del Fabbro, C., Docking, T. R., Durbin, R., Earl, D., Emrich, S., Fedotov, P., Fonseca, N. A., Ganapathy, G., Gibbs, R. A., Gnerre, S., Godzaridis, E., Goldstein, S., Haimel, M., Hall, G., Haussler, D., Hiatt, J. B., Ho, I. Y., Howard, J., Hunt, M., Jackman, S. D., Jaffe, D. B., Jarvis, E. D., Jiang, H., Kazakov, S., Kersey, P. J., Kitzman, J. O., Knight, J. R., Koren, S., Lam, T. W., Lavenier, D., Laviolette, F., Li, Y., Li, Z., Liu, B., Liu, Y., Luo, R., Maccallum, I., Macmanes, M. D., Maillet, N., Melnikov, S., Naquin, D., Ning, Z., Otto, T. D., Paten, B., Paulo, O. S., Phillippy, A. M., Pina-Martins, F., Place, M., Przybylski, D., Qin, X., Qu, C., Ribeiro, F. J., Richards, S., Rokhsar, D. S., Ruby, J. G., Scalabrin, S., Schatz, M. C., Schwartz, D. C., Sergushichev, A., Sharpe, T., Shaw, T. I., Shendure, J., Shi, Y., Simpson, J. T., Song, H., Tsarev, F., Vezzi, F., Vicedomini, R., Vieira, B. M., Wang, J., Worley, K. C., Yin, S., Yiu, S. M., Yuan, J., Zhang, G., Zhang, H., Zhou, S., Korf, I. F. (2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience, 2 (1). p. 10. ISSN 2047-217x

Bui, H. T., Shaw, J. M. (October 2013) Dynamin assembly strategies and adaptor proteins in mitochondrial fission. Current Biology, 23 (19). R891-R899. ISSN 09609822 (ISSN)

Burnley, James, Carbone, Giorgio, Moses, John E (March 2013) Catalytic Reduction of ortho- and para-Azidonitrobenzenes via tert-Butoxide Ion Mediated Electron Transfer. Synlett: accounts and rapid communications in synthetic organic chemistry, 24 (5). pp. 652-656. ISSN 0936-5214

Campbell, R. A., Honegger, K. S., Qin, H., Li, W., Demir, E., Turner, G. C. (June 2013) Imaging a population code for odor identity in the Drosophila mushroom body. Journal of Neuroscience, 33 (25). pp. 10568-81. ISSN 0270-6474

Capra, J. A., Hubisz, M. J., Kostka, D., Pollard, K. S., Siepel, A. (2013) A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes. PLoS Genetics, 9 (8). e1003684. ISSN 15537390 (ISSN)

Carandini, M., Churchland, A. K. (July 2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16 (7). pp. 824-831. ISSN 1097-6256

Carbone, G., Burnley, J., Moses, J. E. (April 2013) A catalytic and tert-butoxide ion-mediated amidation of aldehydes with para-nitro azides. Chem Commun (Camb), 49 (27). pp. 2759-61. ISSN 1359-7345

Carillo, P., Feil, R., Gibon, Y., Satoh-Nagasawa, N., Jackson, D., Blasing, O. E., Stitt, M., Lunn, J. E. (June 2013) A fluorometric assay for trehalose in the picomole range. Plant methods, 9 (1). p. 21. ISSN 1746-4811

Castel, S. E., Martienssen, R. A. (February 2013) RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet, 14 (2). pp. 100-12. ISSN 1471-0064 (Electronic)1471-0056 (Linking)

Cesne, A. L., Judson, I., Maki, R., Grosso, F., Schuetze, S., Mehren, M. V., Chawla, S. P., Demetri, G. D., Nieto, A., Tanovic, A., Blay, J. Y. (October 2013) Trabectedin is a feasible treatment for soft tissue sarcoma patients regardless of patient age: a retrospective pooled analysis of five phase II trials. Br J Cancer, 109 (7). pp. 1717-24. ISSN 1532-1827 (Electronic)0007-0920 (Linking)

Chang, K., Marran, K., Valentine, A., Hannon, G. J. (2013) Creating an miR30-based shRNA vector. Cold Spring Harbor Protocols, 8 (7). pp. 631-635. ISSN 19403402

Chang, K., Marran, K., Valentine, A., Hannon, G. J. (2013) Infection of mammalian cells with retroviral shRNAs. Cold Spring Harbor Protocols, 2013 (8). pp. 732-733. ISSN 19403402

Chang, K., Marran, K., Valentine, A., Hannon, G. J. (2013) Packaging shRNA retroviruses. Cold Spring Harbor Protocols, 2013 (8). pp. 734-737. ISSN 19403402

Chattopadhyaya, B., Baho, E., Huang, Z. J., Schachner, M., Di Cristo, G. (2013) Neural cell adhesion molecule-mediated fyn activation promotes GABAergic synapse maturation in postnatal mouse cortex. Journal of Neuroscience, 33 (14). pp. 5957-68. ISSN 0270-6474

Chaudhri, V. K., Salzler, G. G., Dick, S. A., Buckman, M. S., Sordella, R., Karoly, E. D., Mohney, R., Stiles, B. M., Elemento, O., Altorki, N. K., McGraw, T. E. (June 2013) Metabolic Alterations in Lung Cancer-Associated Fibroblasts Correlated with Increased Glycolytic Metabolism of the Tumor. Molecular Cancer Research, 11 (6). pp. 579-592. ISSN 1541-7786

Chen, M. H., Herzka, T. M., Zeeman, M. E., Plafker, K. S., Minderer, M., Castillo-Martin, M., Cordon-Cardo, C., Plafker, S. M., Trotman, L. C. (April 2013) PTEN levels are controlled by a nuclear transport receptor in lung cancer. Cancer Research, 73 (8 (Sup). p. 5258. ISSN 0008-5472

Chen, Y. C., Carter, H., Parla, J., Kramer, M., Goes, F. S., Pirooznia, M., Zandi, P. P., McCombie, W. R., Potash, J. B., Karchin, R. (January 2013) A Hybrid Likelihood Model for Sequence-Based Disease Association Studies. PLoS Genetics, 9 (1). ISSN 15537390 (ISSN)

Chen, Z., Jaafar, L., Agyekum, D. G., Xiao, H., Wade, M. F., Kumaran, R. I., Spector, D. L., Bao, G., Porteus, M. H., Dynan, W. S., Meiler, S. E. (August 2013) Receptor-mediated delivery of engineered nucleases for genome modification. Nucleic Acids Research, 41 (19). ISSN 03051048 (ISSN)

Chin, L., De Sauvage, F., Egeblad, M., Olive, K. P., Tuveson, D., Weiss, W. (May 2013) Recapitulating human cancer in a mouse. Nature Biotechnology, 31 (5). pp. 392-395. ISSN 10870156

Cho, H. J., Herzka, T., Zheng, W., Castillo-Martin, M., Cordon-Cardo, C., Trotman, L. C. (April 2013) Rapid Cap: A new generation of mouse models for prostate cancer. Cancer Research, 73 (8 (Sup). p. 4091. ISSN 0008-5472

Christensen, S. A., Nemchenko, A., Borrego, E., Murray, I., Sobhy, I. S., Bosak, L., Deblasio, S., Erb, M., Robert, C. A., Vaughn, K. A., Herrfurth, C., Tumlinson, J., Feussner, I., Jackson, D., Turlings, T. C., Engelberth, J., Nansen, C., Meeley, R., Kolomiets, M. V. (April 2013) The maize lipoxygenase, ZmLOX10, mediates green leaf volatile, jasmonate and herbivore-induced plant volatile production for defense against insect attack. Plant Journal, 74 (1). pp. 59-73. ISSN 09607412 (ISSN)

Ciceri, G., Dehorter, N., Sols, I., Huang, Z. J., Maravall, M., Marín, O. (August 2013) Lineage-specific laminar organization of cortical GABAergic interneurons. Nature Neuroscience, 16 (9). pp. 1199-1210. ISSN 10976256

Cioni, J. M., Telley, L., Saywell, V., Cadilhac, C., Jourdan, C., Huber, A.B., Huang, J. Z., Jahannault-Talignani, C., Ango, F. (2013) SEMA3A Signaling Controls Layer-Specific Interneuron Branching in the Cerebellum. Current Biology, 23 (10). pp. 850-861. ISSN 09609822

Cipollini, M. L., Strahl, M., Gorden, N. S., Tomlinson, P., Ware, R. (June 2013) Vegetative survey of Martha's Meadow, an open limestone habitat in northwestern Georgia. Southeastern Naturalist, 12 (2). pp. 317-338. ISSN 15287092

Clark, P., Cohen, M., Danziger, S., Eisner, L., Herz-Roiphe, R., Iwahara, Y., Kafka, O., Kiprovski, A., Koones, G., Milich, A., Mittal, S., Richardson, A., Rubenstein, J., Shapiro, J., Stern, A., Zhao, Y. G., Hackett, J., Joshua-Tor, L. (April 2013) Modeling the Structure and Function of Argonaute in RNAi. Faseb Journal, 27. ISSN 0892-6638

Cleary, S. P., Jeck, W. R., Zhao, X. B., Chen, K., Selitsky, S. R., Savich, G. L., Tan, T. X., Wu, M. C., Getz, G., Lawrence, M. S., Parker, J. S., Li, J. Y., Powers, S., Kim, H., Fischer, S., Guindi, M., Ghanekar, A., Chiang, D. Y. (November 2013) Identification of Driver Genes in Hepatocellular Carcinoma by Exome Sequencing. Hepatology, 58 (5). pp. 1693-1702. ISSN 0270-9139

Cleary, S. P., Jeck, W. R., Zhao, X. B., Selitsky, S. R., Savich, G. L., Tan, T. X., Wu, M. C., Getz, G., Lawrence, M. S., Parker, J. S., Li, J. Y., Powers, S., Kim, H., Fischer, S. E., Guindi, M., Ghanekar, A., Chiang, D. Y. (April 2013) Identification of driver genes in hepatocellular carcinoma by exome sequencing. Cancer Research, 73 (8 (Sup). p. 4598. ISSN 0008-5472

Cléry, A., Sinha, R., Anczuków, O., Corrionero, A., Moursy, A., Daubner, G. M., Valcárcel, J., Krainer, A. R., Allain, F. H. T. (July 2013) Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition. Proceedings of the National Academy of Sciences of the United States of America, 110 (30). E2802-E2811. ISSN 00278424

Cornejo, O. E., Lefebure, T., Bitar, P. D., Lang, P., Richards, V. P., Eilertson, K., Do, T., Beighton, D., Zeng, L., Ahn, S. J., Burne, R. A., Siepel, A., Bustamante, C. D., Stanhope, M. J. (April 2013) Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Mol Biol Evol, 30 (4). pp. 881-93. ISSN 0737-4038

Cowell, Catherine F., Weigelt, Britta, Sakr, Rita A., Ng, Charlotte K. Y., Hicks, James, King, Tari A., Reis-Filho, Jorge S. (July 2013) Progression from ductal carcinoma in situ to invasive breast cancer: Revisited. Molecular Oncology. ISSN 1574-7891

Cowley, B. R., Kaufman, M. T., Butler, Z. S., Churchland, M. M., Ryu, S. I., Shenoy, K. V., Yu, B. M. (December 2013) DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural activity. Journal of Neural Engineering, 10 (6). ISSN 17412560 (ISSN)

Curley, A. A., Eggan, S. M., Lazarus, M. S., Huang, Z. J., Volk, D. W., Lewis, D. A. (February 2013) Role of glutamic acid decarboxylase 67 in regulating cortical parvalbumin and GABA membrane transporter 1 expression: Implications for schizophrenia. Neurobiology of Disease, 50 (1). pp. 179-186. ISSN 0969-9961

Czech, Benjamin, Preall, Jonathan B, McGinn, Jon, Hannon, Gregory J (2013) A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway. Molecular Cell, 50 (5). pp. 749-761. ISSN 1097-2765

Dagnell, M., Frijhoff, J., Pader, I., Augsten, M., Boivin, B., Xu, J., Mandal, P. K., Tonks, N. K., Hellberg, C., Conrad, M., Arnér, E. S. J., Östman, A. (August 2013) Selective activation of oxidized PTP1B by the thioredoxin system modulates PDGF-ß receptor tyrosine kinase signaling. Proceedings of the National Academy of Sciences of the United States of America, 110 (33). pp. 13398-13403. ISSN 00278424

Dalton, J. E., Fear, J. M., Knott, S., Baker, B. S., McIntyre, L. M., Arbeitman, M. N. (September 2013) Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains. BMC Genomics, 14. ISSN 1471-2164 (Public Dataset)

Danko, C. G., Hah, N., Luo, X., Martins, A. L., Core, L., Lis, J. T., Siepel, A., Kraus, W. L. (April 2013) Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells. Mol Cell, 50 (2). pp. 212-22. ISSN 1097-2765

Das, S., Fregoso, O. I., Krainer, A. R. (2013) A new path to oncogene-induced senescence: At the cross-roads of splicing and translation. Cell Cycle, 12 (10). ISSN 1551-4005 (Electronic)1551-4005 (Linking)

DeFelipe, J., López-Cruz, P. L., Benavides-Piccione, R., Bielza, C., Larrañaga, P., Anderson, S., Burkhalter, A., Cauli, B., Fairén, A., Feldmeyer, D., Fishell, G., Fitzpatrick, D., Freund, T. F., González-Burgos, G., Hestrin, S., Hill, S., Hof, P. R., Huang, J., Jones, E. G., Kawaguchi, Y., Kisvárday, Z., Kubota, Y., Lewis, D. A., Marín, O., Markram, H., McBain, C. J., Meyer, H. S., Monyer, H., Nelson, S. B., Rockland, K., Rossier, J., Rubenstein, J. L. R., Rudy, B., Scanziani, M., Shepherd, G. M., Sherwood, C. C., Staiger, J. F., Tamás, G., Thomson, A., Wang, Y., Yuste, R., Ascoli, G. A. (March 2013) New insights into the classification and nomenclature of cortical GABAergic interneurons. Nature Reviews Neuroscience, 14 (3). pp. 202-216. ISSN 1471003X (ISSN)

DeMatteo, R. P., Ballman, K. V., Antonescu, C. R., Corless, C., Kolesnikova, V., von Mehren, M., McCarter, M. D., Norton, J., Maki, R. G., Pisters, P. W., Demetri, G. D., Brennan, M. F., Owzar, K., American College of Surgeons Oncology Group Intergroup Adjuvant, Gist Study Team for the Alliance for Clinical Trials in Oncolog (September 2013) Long-term results of adjuvant imatinib mesylate in localized, high-risk, primary gastrointestinal stromal tumor: ACOSOG Z9000 (Alliance) intergroup phase 2 trial. Ann Surg, 258 (3). pp. 422-9. ISSN 1528-1140 (Electronic)0003-4932 (Linking)

Deck, Courtney A., McKay, Sheldon J., Fiedler, Tristan J., LeMoine, Christophe M. R., Kajimura, Makiko, Nawata, C. Michele, Wood, Chris M., Walsh, Patrick J. (October 2013) Transcriptome responses in the rectal gland of fed and fasted spiny dogfish shark (Squalus acanthias) determined by suppression subtractive hybridization. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics. ISSN 1744-117X

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Huang, Z. J., Zeng, H. (July 2013) Genetic Approaches to Neural Circuits in the Mouse. Annual Review of Neuroscience, 36. ISSN 0147-006X

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Wang, K., Kim, C., Bradfield, J., Guo, Y. F., Toskala, E., Otieno, F. G., Hou, C. P., Thomas, K., Cardinale, C., Lyon, G. J., Golhar, R., Hakonarson, H. (July 2013) Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement. Genome Medicine, 5. ISSN 1756-994X

Wang, L., Liang, B., Zhong, Y. (September 2013) Reduced EGFR level potentially mediates the A beta 42-induced neuronal loss in transgenic fruit fly and mouse. Protein & Cell, 4 (9). pp. 647-649. ISSN 1674-800X

Wang, L., Stein, L. D. (2013) Modeling the evolution dynamics of exon-intron structure with a general random fragmentation process. BMC Evolutionary Biology, 13. p. 57. ISSN 1471-2148 (Electronic)1471-2148 (Linking)

Wargas, Robert, Pollock, Ludmila (June 2013) Second Century: Cold Spring Harbor Laboratory and the Biotechnology Revolution. (Unpublished)

Watson, J. (January 2013) Oxidants, antioxidants and the current incurability of metastatic cancers. Open Biology, 3 (1). pp. 2046-2441.

Wei, Y., Tsigankov, D., Koulakov, A. (December 2013) The molecular basis for the development of neural maps. Annals of the New York Academy of Sciences, 1305. pp. 44-60. ISSN 0077-8923

Weirauch, M. T., Cote, A., Norel, R., Annala, M., Zhao, Y., Riley, T. R., Saez-Rodriguez, J., Cokelaer, T., Vedenko, A., Talukder, S., Bussemaker, H. J., Quaid, M. D., Bulyk, M. L., Stolovitzky, G., Hughes, T. R., Agius, P., Arvey, A., Bucher, P., Callan Jr, C. G., Chang, C. W., Chen, C. Y., Chen, Y. S., Chu, Y. W., Grau, J., Grosse, I., Jagannathan, V., Keilwagen, J., Kiebasa, S. M., Kinney, J. B., Klein, H., Kursa, M. B., Lähdesmäki, H., Laurila, K., Lei, C., Leslie, C., Linhart, C., Murugan, A., Myšičková, A., Noble, W. S., Nykter, M., Orenstein, Y., Posch, S., Ruan, J., Rudnicki, W. R., Schmid, C. D., Shamir, R., Sung, W. K., Vingron, M., Zhang, Z. (February 2013) Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology, 31 (2). pp. 126-134. ISSN 10870156 (ISSN)

Westfall, M., Spector, M. S., Gulrajani, M., Marimpietri, C., Kritharis, A., Fields, S. Z., Allen, S. L., Hawtin, R. (April 2013) Functional characterization of KIT and Fc epsilon R1 receptor mutations in Mast Cell Leukemia using Single Cell Network Profiling (SCNP). Cancer Research, 73 (8 (Sup). p. 3524. ISSN 0008-5472

Wiggs, J. L., Howell, G. R., Linkroum, K., Abdrabou, W., Hodges, E., Braine, C. E., Pasquale, L. R., Hannon, G. J., Haines, J. L., John, S. W. M. (April 2013) Variations in COL15A1 and COL18A1 influence age of onset of primary open angle glaucoma. Clinical Genetics, 84 (2). p. 167. ISSN 00099163

Wolthuizen, M., Nisselle, A., Halliday, J., Metcalfe, S. A., Aitken, M., Allen, K. J., Delatycki, M. B. (January 2013) Why do people choose not to have screening for hemochromatosis? Genetic Testing and Molecular Biomarkers, 17 (1). pp. 21-24. ISSN 19450265

Wrzeszczynski, K. O., Fan, G. F., Fu, C. X., Pappin, D. J., Lucito, R., Tonks, N. K. (April 2013) Proteomic identification of carboplatin resistance in ovarian cancer cells. Cancer Research, 73 (8 Supp). p. 2502. ISSN 0008-5472

Wrzeszczynski, K. O., Varadan, V., Kamalakaran, S., Levine, D. A., Dimitrova, N., Lucito, R. (August 2013) Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer. Methods Mol Biol, 1049. pp. 35-51. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Wu, J., Anczukow, O., Krainer, A. R., Zhang, M. Q., Zhang, C. (2013) OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. Nucleic Acids Research, 41 (10). pp. 5149-5163. ISSN 03051048 (ISSN)

Wu, Q., Luo, A., Zadrozny, T., Sylvester, A., Jackson, D. (2013) Fluorescent protein marker lines in maize: generation and applications. The International Journal of Developmental Biology, 57 (6-8). pp. 535-43. ISSN 0214-6282

Xu, X., Zhang, Y., Williams, J., Antoniou, E., McCombie, W. R., Wu, S., Zhu, W., Davidson, N. O., Denoya, P., Li, E. (June 2013) Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets. BMC Bioinformatics, 14 Sup. S1. ISSN 1471-2105 (Electronic)1471-2105 (Linking)

Xue, B., Krishnamurthy, K., Allred, D. C., Muthuswamy, S. K. (2013) Loss of Par3 promotes breast cancer metastasis by compromising cell-cell cohesion. Nature Cell Biology, 15 (2). pp. 189-200. ISSN 1465-7392

Yamada, Y., Laufer, I., Cox, B. W., Lovelock, D. M., Maki, R. G., Zatcky, J. M., Boland, P. J., Bilsky, M. H. (October 2013) Preliminary results of high-dose single-fraction radiotherapy for the management of chordomas of the spine and sacrum. Neurosurgery, 73 (4). 673-80; discussion 680. ISSN 1524-4040 (Electronic)0148-396X (Linking)

Yan, Yiheng, Candreva, Jason, Shi, Hai, Ernst, Evan, Martienssen, Robert, Schwender, Jorg, Shanklin, John (December 2013) Survey of the total fatty acid and triacylglycerol composition and content of 30 duckweed species and cloning of a Delta 6-desaturase responsible for the production of gamma-linolenic and stearidonic acids in Lemna gibba. BMC Plant Biology, 13. ISSN 1471-2229

Youmans, S. J., Fein, M. R., Wirkowski, E., Maesaka, J. K. (May 2013) Demonstration of natriuretic activity in urine of neurosurgical patients with renal salt wasting. F1000 Research, 2. p. 126. ISSN 20461402 (ISSN)

Zariwala, H. A., Kepecs, A., Uchida, N., Hirokawa, J., Mainen, Z. F. (2013) The Limits of Deliberation in a Perceptual Decision Task. Neuron, 78 (2). pp. 339-51. ISSN 08966273 (ISSN)

Zeng, L., Choi, S. C., Danko, C. G., Siepel, A., Stanhope, M. J., Burne, R. A. (2013) Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans. PLoS One, 8 (3). e60465. ISSN 1932-6203

Zhai, J. X., Zhao, Y. Y., Simon, S. A., Huang, S., Petsch, K., Arikit, S., Pillay, M., Ji, L. J., Xie, M., Cao, X. F., Yu, B., Timmermans, M., Yang, B., Chen, X. M., Meyers, B. C. (July 2013) Plant MicroRNAs Display Differential 3 ' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species. Plant Cell, 25 (7). pp. 2417-2428. ISSN 1040-4651

Zhang, L., Prak, L., Rayon-Estrada, V., Thiru, P., Flygare, J., Lim, B., Lodish, H. F. (July 2013) ZFP36L2 is required for self-renewal of early burst-forming unit erythroid progenitors. Nature, 499 (7456). pp. 92-6. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Zhang, Y., Shin, S. J., Liu, D., Ivanova, E., Foerster, F., Ying, H., Zheng, H., Xiao, Y., Chen, Z., Protopopov, A., Depinho, R. A., Paik, J. H. (June 2013) ZNF365 Promotes Stability of Fragile Sites and Telomeres. Cancer Discovery, 3 (7). pp. 798-811. ISSN 21598274

Zhao, J., Lu, Y., Zhao, X., Yao, X., Shuai, Y., Huang, C., Wang, L., Jeong, S. H., Zhong, Y. (June 2013) Dissociation of rugose-dependent short-term memory component from memory consolidation in Drosophila. Genes, Brain and Behavior, 12 (6). pp. 626-632. ISSN 16011848

Zhong, Y., Nellimoottil, T., Peace, J. M., Knott, S. R., Villwock, S. K., Yee, J. M., Jancuska, J. M., Rege, S., Tecklenburg, M., Sclafani, R. A., Tavare, S., Aparicio, O. M. (April 2013) The level of origin firing inversely affects the rate of replication fork progression. J Cell Biol, 201 (3). pp. 373-83. ISSN 0021-9525

Znamenskiy, P., Zador, A. M. (May 2013) Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination. Nature, 497. pp. 482-485. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Book Section

Grochola, Lukasz F., Zeron-Medina, Jorge, Repapi, Emmanouela, Finlayson, Alexander E., Cai, Ying, Atwal, Gurinder Singh, Bond, Gareth L. (2013) The Inheritance of p53. In: p53 in the Clinics. Springer New York, pp. 25-46. ISBN 978-1-4614-3675-1

Hua, Yimin, Sahashi, Kentaro, Rigo, Frank, Hung, Gene, Bennett, C. Frank, Krainer, AdrianR (2013) Correction of RNA Splicing with Antisense Oligonucleotides as a Therapeutic Strategy for a Neurodegenerative Disease. In: Chembiomolecular Science. Springer Japan, pp. 301-313. ISBN 978-4-431-54037-3

Lyon, Gholson J., Bird, Lynne M., Rope, Alan (2013) X-linked Malformation and Infantile Lethality Syndrome (provisionally named Ogden Syndrome). In: Inborn errors of development. Oxford University Press, Oxford; New York. ISBN 9780195306910 (Submitted)

Roca, X., Krainer, A. R. (2013) RNA Splicing. In: Brenner's Encyclopedia of Genetics. Elsevier Science. ISBN 9780080961569

Monograph

Stillman, Bruce (2013) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Wigler, M. H. (June 2013) Cold Spring Harbor Laboratory Annual Reports Excerpts: Wigler Laboratory 1979-2011. Project Report. Cold Spring Harbor Laboratory.

Conference or Workshop Item

Churchland, A. K. (May 2013) Noise in decision making. In: European Science Foundation Exploratory Workshop , May 29th 2013, Sant Fruitós del Bages, Spain. (Unpublished)

Fang, Han, Wu, Yiyang, O'Rawe, Jason, Mittelman, David, Lyon, Gholson J. (November 2013) Whole genome sequencing analysis of a family with familial dysautonomia and neuropsychiatric symptoms. In: Cold Spring Harbor Laboratory Precision Medicine Meeting, November 2013, Cold Spring Harbor, New York. (Unpublished)

Kim, Y., Pradhan, K., Fitzgerald, G., Umadevi Venkataraju, K, Osten, P. (November 2013) Serial two-photon tomography-based whole-brain activity mapping in cntnap2 ko mouse model of autism. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Lyon, Gholson J. (November 2013) Advancing Precision Medicine through clinical grade whole genome sequencing, return of results and deep brain stimulation. In: Precision Medicine: Personal Genomes & Pharmacogenomics, Nov 13th - Nov 16th 2103, Cold Spring Harbor, NY . (Unpublished)

Lyon, Gholson J. (October 2013) Amino-terminal acetylation of proteins by N-terminal acetyltransferases: mechanisms and relevance to human genetic diseases. In: Stony Brook University Department of Chemistry Seminar Series, Oct 3rd 2013, Stony Brook, NY. (Unpublished)

Lyon, Gholson J. (October 2013) Amino-terminal acetylation of proteins: role in human disease and biology. In: Stony Brook University Department of Pharmacology Seminar Series, Oct 29th 2013, Stony Brook, NY. (Unpublished)

Lyon, Gholson J. (September 2013) Childhood-­onset Neuropsychiatric Disorders. In: FarGen Summit (Faroe Genome Project), Sept 19th-20th 2013, Tórshavn, The Faroe Islands. (Unpublished)

Lyon, Gholson J. (May 2013) Clinical genetics and other aspects of neuropsychiatric disorders. In: The International Behavioural and Neural Genetics Society (IBANGS), Genes, Brain & Behavior 15th Annual Meeting, May 20th-24th 2013, Leuven, Belgium. (Unpublished)

Lyon, Gholson J. (May 2013) Clinical genetics and other aspects of neuropsychiatric disorders. In: NGS Translate World Forum, May 28th-31st 2013, Boston, MA. (Unpublished)

Lyon, Gholson J. (March 2013) Controversies in Giving Data Back. In: The Future of Genomic Medicine VI, March 7th-8th 2013, La Jolla, CA. (Unpublished)

Lyon, Gholson J. (2013) Genetic and Biochemical Analysis of Childhood-­Onset Idiopathic Neuropsychiatric Disorders. In: Institute for Computational Biomedicine and Department of Physiology and Biophysics Seminar Series, Feb 13th 2013, Weill Cornell Medical College, New York, NY. (Unpublished)

Lyon, Gholson J. (December 2013) Increasing Accuracy for Exome and Whole Genome Sequencing. In: Bio-IT World and Cambridge Healthtech Institute's Inaugural- Clinical Exome Sequencing, December 4-5th 2013, Lisbon, Portugal. (Unpublished)

Lyon, Gholson J. (April 2013) Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. In: COMPUTATIONAL BIOLOGY & BIOINFORMATICS SEMINAR SERIES, April 10th 2013, Cold Spring Harbor Laboratory. (Unpublished)

Lyon, Gholson J. (September 2013) N=1 Human Study in Clinical Neurosciences: Genomics Guided Medicine and Deep Brain Stimulation. In: 5th Annual Consumer Genetics Conference, Sept 25th-27th 2013, Boston, MA. (Unpublished)

Lyon, Gholson J. (November 2013) Stopping 23andMe will only delay the revolution medicine needs. In: The Conversation.

Lyon, Gholson J. (June 2013) Toward more accurate variant calling for personal genomes. In: The Clinical Genome Conference, June 25th-26th 2013, San Francisco, CA. (Unpublished)

Lyon, Gholson J. (February 2013) Whole Genome Sequencing Analysis of a severe Idiopathic Intellectual Disability Syndrome or "limitations of theory may not be revealed when the facts are too few" - Knox 1958. In: 20th Annual Molecular Psychiatry Meeting, Feb 3rd-5th 2013, Park City, UT. (Unpublished)

Lyon, Gholson J. (July 2013) Whole genome sequencing, clinical interpretation, and deep brain stimulation in a severely mentally ill person. In: Gordon Research Conference, Human Genetics and Genomics, July 7th-12th 2013, Bryant University, Smithfield, RI . (Unpublished)

Lyon, Gholson J. (July 2013) Whole genome sequencing, clinical interpretation, and deep brain stimulation in a severely mentally ill person. In: Wiring the Brain - Cold Spring Harbor Laboratory, July 18th-22nd 2013, Cold Spring Harbor, New York. (Unpublished)

Lyon, Gholson J., O'Rawe, Jason, Wu, Yiyang, Rope, Alan, Robison, Reid J., Wang, Kai, Swensen, Jeffrey J. (March 2013) Whole Genome Sequencing Analysis of an Idiopathic Intellectual Disability Syndrome. In: ACMG Annual Clinical Genetics Meeting, March 19th-23rd 2013, Phoenix, AZ. (Unpublished)

Lyon, Gholson J., Robison, Reid J., Wang, Kai (March 2013) The Implementation of Clinical Genomics: Ethical, Societal and Regulatory Considerations. In: ACMG Annual Clinical Genetics Meeting, March 19th-23rd 2013, Phoenix, AZ. (Unpublished)

Nussenzweig, M., O'Garra, A., Smale, S., Stewart, D., Stillman, B. (2013) Immunity and Tolerance. In: Cold Spring Harbor Symposia on Quantitative Biology LXXVIII: Immunity and Tolerance, Cold Spring Harbor.

O'Rawe, Jason, Jiang, Tao, Sun, Guangqing, Wu, Yiyang, Wang, Wei, Hu, Jingchu, Bodily, Paul, Tian, Lifeng, Hakonarson, Hakon, Johnson, W. Evan, Robison, Reid J., Wei, Zhi, Wang, Kai, Lyon, Gholson J. (May 2013) Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. In: The Biology of Genomes , May 2013, Cold Spring Harbor Laboratory. (Unpublished)

O'Rawe, Jason, Jiang, Tao, Sun, Guangqing, Wu, Yiyang, Wang, Wei, Hu, Jingchu, Bodily, Paul, Tian, Lifeng, Harkonarson, Hakon, Johnson, W. Evan, Robison, Reid J., Wei, Zhi, Wang, Kai, Lyon, Gholson J. (March 2013) Toward more accurate variant calling for “personal genomes”. In: ACMG Annual Clinical Genetics Meeting, March 19th-23rd 2013, Phoenix, AZ. (Unpublished)

O'Rawe, Jason, Wu, Yiyang, Mittelman, David, Fang, Han, Lyon, Gholson J. (November 2013) Uncovering genetic components of a previously un-described syndrome. In: Cold Spring Harbor Laboratory: Precision Medicine Meeting, November 2013, Cold Spring Harbor, New York. (Unpublished)

Park, Juwon, Qiu, Jing, Nakasone, Elizabeth S, Egeblad, Mikala (February 2013) Cancer cell-secreted CXCL1 chemokine acts on neutrophils to support metastasis. In: AACR Special Conference on Tumor Invasion and Metastasis.

Sheppard, J. P., Ryan, M.B., Churchland, A. K. (November 2013) Optogenetic stimulation of visual inputs to posterior parietal cortex biases choice behavior of rats on a multisensory decision task. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Book

Wang, D., Pan, E., Fang, G., Kumari, S., He, F., Ware, D., Maslov, S., Gerstein, M. (September 2013) Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between arabidopsis and poplar. 2013 4th ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013 . ACM, pp. 689-690. ISBN 9781450324342 (ISBN)

Thesis

Bodnar, M. S. (March 2013) The Dynamics of Pluripotency Genes Upon Differentiation of Mouse Embryonic Stem Cells. PhD thesis, Cold Spring Harbor Laboratory.

Calarco, Joseph P. (2013) Chromatin Dynamics during Germline Development. PhD thesis, Cold Spring Harbor Laboratory.

Ebbesen, Saya H. (April 2013) RNAi Mouse Models of Breast Cancer Tumor Suppressor Genes. PhD thesis, Cold Spring Harbor Laboratory.

Guzzardo, Paloma M. (April 2013) Identification and characterization of novel components of the Drosophila piRNA pathway. PhD thesis, Cold Spring Harbor Laboratory.

Kudla, Marek (August 2013) Quantitative description of microRNA target site occupancy in mouse embryonic stem cells and derived cells of neuronal lineage. PhD thesis, Cold Spring Harbor Laboratory.

Pautler, Michael (August 2013) Meristem size and determinacy in Maize. PhD thesis, Cold Spring Harbor Laboratory.

Plavskin, Yevgeniy (August 2013) Regulation of the auxin response by an ancient small RNA pathway. PhD thesis, Cold Spring Harbor Laboratory.

Patent

Michael Wigler (2013) Determining a probabilistic diagnosis of autism by analysis of genomic copy number variations. United States Patent 8554488. .

Image

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental figure 1 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental figure 2 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (May 2013) Supplemental figure 3 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental figure 4 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental figure 5 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

Video

Lyon, Gholson J. (November 2013) Advancing Precision Medicine through clinical grade whole genome sequencing, return of results and deep brain stimulation. [Video] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplementary video of subject M.A for Integrating precision medicine in the study and clinical treatment of a severely mentally ill person. PeerJ 1:e177. [Video]

Audio

Lyon, Gholson J. (November 2013) Cambridge HealthTech Institute Clinical Genomics Podcast: Highlights from the Upcoming Clinical Exome Sequencing Conference. [Audio]

Lyon, Gholson J. (December 2013) FDA Crackdown on 23andMe Delays a Revolution in Medicine. [Audio] (Unpublished)

Lyon, Gholson J. (December 2013) "FDA Crackdown on 23ndMe Delays a Revolution in Medicine, says Medical Geneticist, Gholson Lyon". [Audio]

Dataset

Gillis, J., Pavlidis, P. (2013) Cross-validation calculation from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]

Gillis, J., Pavlidis, P. (2013) Data from "Assessing identity, redundancy and confounds in Gene Ontology annotations over time". [Dataset]

Gillis, J., Pavlidis, P. (2013) Use case: The postsynaptic proteome, from "Assessing identity, redundancy and confounds in Gene Ontology annotations over time". [Dataset]

Lyon, Gholson J., O'Rawe, Jason, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Reese, Martin G. (August 2013) Supplemental file 1 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

Mistry, M., Gillis, J., Pavlidis, P. (2013) Data and design files for 6 public datasets used in "Genome-wide expression profiling of schizophrenia using a large combined cohort" Mistry, M. and Gillis, J. and Pavlidis, P. (2013) Molecular Psychiatry, 18 (2). pp. 215-225. [Dataset]

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 10 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 12 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 2 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 3 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 4 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 5 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 6 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 7 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 8 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 9 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

Sheppard, J. P., Raposo, D., Churchland, A. K. (August 2013) Tutorial and data for "Sheppard, J. P. and Raposo, D. and Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6).". [Dataset]

Teaching Resource

Lyon, Gholson J. (April 2013) Exome and Genome Sequencing. [Teaching Resource] (Unpublished)

Lyon, Gholson J. (May 2013) Exome and Genome Sequencing. [Teaching Resource] (Unpublished)

Other

Fang, Han (August 2013) Finding the sources of missing heritability in a yeast cross. Journal Club. (Unpublished)

Fang, Han (July 2013) Whole Genome Sequencing in support of Wellness and Health Maintenance. Journal Club. (Unpublished)

Levine, Jesse (September 2013) Pluripotent Stem Cells Induced from Mouse Somatic Cells by Small- Molecule Compounds. Journal Club. (Unpublished)

Lyon, Gholson J. (June 2013) The Chaperone-Like Protein HYPK Acts Together with NatA in Cotranslational N-Terminal Acetylation and Prevention of Huntingtin Aggregation. Journal Club. (Unpublished)

Lyon, Gholson J. (October 2013) "Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway". Journal Club. (Unpublished)

Lyon, Gholson J. (December 2013) "Epidemiology, epigenetics and the ‘Gloomy Prospect’: embracing randomness in population health research and practice". Journal Club. (Unpublished)

Lyon, Gholson J. (April 2013) Genome Engineering Using CRISPR. Journal Club. (Unpublished)

Lyon, Gholson J. (2013) Human Subject Research Protocol. Gholson Lyon. (Unpublished)

Lyon, Gholson J. (2013) Informed Consent for Human Subject Research Project. Gholson Lyon. (Unpublished)

Lyon, Gholson J. (August 2013) Molecular basis for N-terminal acetylation by the heterodimeric NatA complex. Journal Club. (Unpublished)

Lyon, Gholson J. (November 2013) "The ubiquitin reference technique and tandem fluorescence timers". Journal Club. (Unpublished)

Lyon, Gholson J., Doerfel, Max, O'Rawe, Jason, Wu, Yiyang, Fang, Han, Kota, Prashant, Jimenez Barron, Laura (2013) Human Genetics and Genomic Medicine. Cold Spring Harbor Laboratory.

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (August 2013) Supplemental file 11 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". UNSPECIFIED. (Unpublished)

Wu, Yiyang (March 2013) The evolution of MIP technology. Journal Club. (Unpublished)