Items where Year is 2013

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Number of items: 389.

A

Abera, M., Sordella, R., Kazanietz, M. (2013) PKC alpha is implicated in epithelial to mesenchymal transition and erlotinib resistance in non-small cell lung carcinoma cells. Cancer Research, 73 (8 (Sup). p. 5261. ISSN 0008-5472

Aboukhalil, R., Fendler, B., Atwal, G. S. (2013) Kerfuffle: a web tool for multi-species gene colocalization analysis. BMC Bioinformatics, 14. ISSN 1471-2105

Anne, S. L., Govek, E. E., Ayrault, O., Kim, J. H., Zhu, X., Murphy, D. A., Van Aelst, L., Roussel, M. F., Hatten, M. E. (2013) WNT3 inhibits cerebellar granule neuron progenitor proliferation and medulloblastoma formation via MAPK activation. PLoS ONE, 8 (11). ISSN 19326203 (ISSN)

Arbiza, L., Gronau, I., Aksoy, B. A., Hubisz, M. J., Gulko, B., Keinan, A., Siepel, A. (2013) Genome-wide inference of natural selection on human transcription factor binding sites. Nat Genet, 45 (7). pp. 723-9. ISSN 1061-4036

B

Ballouz, S., Liu, J. Y., George, R. A., Bains, N., Liu, A., Oti, M., Gaeta, B., Fatkin, D., Wouters, M. A. (2013) Gentrepid V2.0: a web server for candidate disease gene prediction. BMC Bioinformatics, 14. ISSN 1471-2105

Bardot, E. S., Valdes, V. J., Zhang, J., Perdigoto, C. N., Nicolis, S., Hearn, S. A., Silva, J. M., Ezhkova, E. (2013) Polycomb subunits Ezh1 and Ezh2 regulate the Merkel cell differentiation program in skin stem cells. Embo Journal, 32 (14). pp. 1990-2000. ISSN 02614189

Basu, Jayeeta, Srinivas, Kalyan V, Cheung, Stephanie K, Taniguchi, Hiroki, Huang, Z.  Josh, Siegelbaum, Steven A (2013) A Cortico-Hippocampal Learning Rule Shapes Inhibitory Microcircuit Activity to Enhance Hippocampal Information Flow. Neuron, 79 (6). pp. 1208-1221. ISSN 0896-6273

Batut, P., Gingeras, T. R. (2013) RAMPAGE: Promoter activity profiling by paired-end sequencing of 5'-complete cDNAs. Current Protocols in Molecular Biology (SUPPL). Unit25B. ISSN 19343639 (ISSN)

Batut, P. J., Dobin, A., Plessy, C., Carninci, P., Gingeras, T. R. (2013) High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res, 23 (1). pp. 169-180. ISSN 1549-5469 (Electronic)1088-9051 (Linking)

Belousov, V. V., Enikolopov, G. N., Mishina, N. M. (2013) Compartmentalization of ROS-mediated signal transduction. Russian Journal of Bioorganic Chemistry, 39 (4). pp. 341-355. ISSN 10681620

Ben-Hur, V., Denichenko, P., Siegfried, Z., Maimon, A., Krainer, A., Davidson, B., Karni, R. (2013) S6K1 Alternative Splicing Modulates Its Oncogenic Activity and Regulates mTORC1. Cell Reports, 3 (1). pp. 103-115. ISSN 22111247

Berger, A. H., Chen, M., Morotti, A., Janas, J. A., Niki, M., Bronson, R. T., Taylor, B. S., Ladanyi, M., Van Aelst, L., Politi, K., Varmus, H. E., Pandolfi, P. P. (2013) DOK2 inhibits EGFR-mutated lung adenocarcinoma. PLoS One, 8 (11). e79526. ISSN 1932-6203

Berman, E., Girotra, M., Cheng, C., Chanel, S., Maki, R., Shelat, M., Strauss, H. W., Fleisher, M., Heller, G., Farooki, A. (2013) Effect of long term imatinib on bone in adults with chronic myelogenous leukemia and gastrointestinal stromal tumors. Leuk Res, 37 (7). pp. 790-4. ISSN 1873-5835 (Electronic)0145-2126 (Linking)

Beshel, J., Zhong, Y. (2013) Graded Encoding of Food Odor Value in the Drosophila Brain. Journal of Neuroscience, 33 (40). pp. 15693-15704. ISSN 0270-6474

Bhattacharjee, S., Osman, F., Feeney, L., Lorenz, A., Bryer, C., Whitby, M. C. (2013) MHF1-2/CENP-S-X performs distinct roles in centromere metabolism and genetic recombination. Open Biology, 3 (SEP). ISSN 20462441 (ISSN)

Bilan, D. S., Matlashov, M. E., Gorokhovatsky, A. Y., Schultz, C., Enikolopov, G. N., Belousov, V. V. (2013) Genetically encoded fluorescent indicator for NAD(+)/NADH ratio imaging in different cellular compartments. Febs Journal, 280 (S1). p. 615. ISSN 1742-464X

Birbrair, A., Zhang, T., Wang, Z. M., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (2013) Role of pericytes in skeletal muscle regeneration and fat accumulation. Stem Cells and Development, 22 (16). pp. 2298-2314. ISSN 15473287

Birbrair, A., Zhang, T., Wang, Z. M., Messi, M. L., Enikolopov, G. N., Mintz, A., Delbono, O. (2013) Skeletal muscle pericyte subtypes differ in their differentiation potential. Stem Cell Research, 10 (1). pp. 67-84. ISSN 1873-5061

Bodnar, M. S. (2013) The Dynamics of Pluripotency Genes Upon Differentiation of Mouse Embryonic Stem Cells. PhD thesis, Cold Spring Harbor Laboratory.

Bodnar, M. S., Spector, D. L. (2013) Chromatin Meets Its Organizers. Cell, 153 (6). pp. 1187-1189. ISSN 0092-8674

Boettner, B., Van Aelst, L. (2013) Introduction to the ECR special issue on the roles of small GTPases. Experimental Cell Research, 319 (15). p. 2309. ISSN 00144827

Boivin, B., Chaudhary, F., Dickinson, B. C., Haque, A., Pero, S. C., Chang, C. J., Tonks, N. K. (2013) Receptor protein-tyrosine phosphatase α regulates focal adhesion kinase phosphorylation and ErbB2 oncoprotein mediated mammary epithelial cell motility. Journal of Biological Chemistry, 288 (52). pp. 36926-36935. ISSN 00219258 (ISSN)

Bommert, P., Je, B. I., Goldshmidt, A., Jackson, D. (2013) The maize G alpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size. Nature, 502 (7472). pp. 555-558. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Bommert, P., Nagasawa, N. S., Jackson, D. (2013) Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45 (3). pp. 334-337. ISSN 1061-4036

Borges, F., Calarco, J. P., Martienssen, R. A. (2013) Reprogramming the Epigenome in Arabidopsis Pollen. Cold Spring Harbor Symposia on Quantitative Biology, 77. pp. 1-5. ISSN 00917451 (ISSN)

Borges, F., Martienssen, R. A. (2013) Establishing epigenetic variation during genome reprogramming. RNA Biology, 10 (4). pp. 490-4. ISSN 1555-8584 (Electronic)1547-6286 (Linking)

Boyle, B., Hopkins, N., Lu, Z. Y., Garay, J. A. R., Mozzherin, D., Rees, T., Matasci, N., Narro, M. L., Piel, W. H., McKay, S. J., Lowry, S., Freeland, C., Peet, R. K., Enquist, B. J. (2013) The taxonomic name resolution service: an online tool for automated standardization of plant names. BMC Bioinformatics, 14. ISSN 1471-2105

Bradnam, K. R., Fass, J. N., Alexandrov, A., Baranay, P., Bechner, M., Birol, I., Boisvert, S., Chapman, J. A., Chapuis, G., Chikhi, R., Chitsaz, H., Chou, W. C., Corbeil, J., Del Fabbro, C., Docking, T. R., Durbin, R., Earl, D., Emrich, S., Fedotov, P., Fonseca, N. A., Ganapathy, G., Gibbs, R. A., Gnerre, S., Godzaridis, E., Goldstein, S., Haimel, M., Hall, G., Haussler, D., Hiatt, J. B., Ho, I. Y., Howard, J., Hunt, M., Jackman, S. D., Jaffe, D. B., Jarvis, E. D., Jiang, H., Kazakov, S., Kersey, P. J., Kitzman, J. O., Knight, J. R., Koren, S., Lam, T. W., Lavenier, D., Laviolette, F., Li, Y., Li, Z., Liu, B., Liu, Y., Luo, R., Maccallum, I., Macmanes, M. D., Maillet, N., Melnikov, S., Naquin, D., Ning, Z., Otto, T. D., Paten, B., Paulo, O. S., Phillippy, A. M., Pina-Martins, F., Place, M., Przybylski, D., Qin, X., Qu, C., Ribeiro, F. J., Richards, S., Rokhsar, D. S., Ruby, J. G., Scalabrin, S., Schatz, M. C., Schwartz, D. C., Sergushichev, A., Sharpe, T., Shaw, T. I., Shendure, J., Shi, Y., Simpson, J. T., Song, H., Tsarev, F., Vezzi, F., Vicedomini, R., Vieira, B. M., Wang, J., Worley, K. C., Yin, S., Yiu, S. M., Yuan, J., Zhang, G., Zhang, H., Zhou, S., Korf, I. F. (2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience, 2 (1). p. 10. ISSN 2047-217x

Bui, H. T., Shaw, J. M. (2013) Dynamin assembly strategies and adaptor proteins in mitochondrial fission. Current Biology, 23 (19). R891-R899. ISSN 09609822 (ISSN)

C

Calarco, Joseph P. (2013) Chromatin Dynamics during Germline Development. PhD thesis, Cold Spring Harbor Laboratory.

Campbell, R. A., Honegger, K. S., Qin, H., Li, W., Demir, E., Turner, G. C. (2013) Imaging a population code for odor identity in the Drosophila mushroom body. Journal of Neuroscience, 33 (25). pp. 10568-81. ISSN 0270-6474

Capra, J. A., Hubisz, M. J., Kostka, D., Pollard, K. S., Siepel, A. (2013) A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes. PLoS Genetics, 9 (8). e1003684. ISSN 15537390 (ISSN)

Carandini, M., Churchland, A. K. (2013) Probing perceptual decisions in rodents. Nature Neuroscience, 16 (7). pp. 824-831. ISSN 1097-6256

Carillo, P., Feil, R., Gibon, Y., Satoh-Nagasawa, N., Jackson, D., Blasing, O. E., Stitt, M., Lunn, J. E. (2013) A fluorometric assay for trehalose in the picomole range. Plant methods, 9. ISSN 1746-4811

Castel, S. E., Martienssen, R. A. (2013) RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet, 14 (2). pp. 100-12. ISSN 1471-0064 (Electronic)1471-0056 (Linking)

Cesne, A. L., Judson, I., Maki, R., Grosso, F., Schuetze, S., Mehren, M. V., Chawla, S. P., Demetri, G. D., Nieto, A., Tanovic, A., Blay, J. Y. (2013) Trabectedin is a feasible treatment for soft tissue sarcoma patients regardless of patient age: a retrospective pooled analysis of five phase II trials. Br J Cancer, 109 (7). pp. 1717-24. ISSN 1532-1827 (Electronic)0007-0920 (Linking)

Chattopadhyaya, B., Baho, E., Huang, Z. J., Schachner, M., Di Cristo, G. (2013) Neural cell adhesion molecule-mediated fyn activation promotes GABAergic synapse maturation in postnatal mouse cortex. Journal of Neuroscience, 33 (14). pp. 5957-68. ISSN 0270-6474

Chaudhri, V. K., Salzler, G. G., Dick, S. A., Buckman, M. S., Sordella, R., Karoly, E. D., Mohney, R., Stiles, B. M., Elemento, O., Altorki, N. K., McGraw, T. E. (2013) Metabolic Alterations in Lung Cancer-Associated Fibroblasts Correlated with Increased Glycolytic Metabolism of the Tumor. Molecular Cancer Research, 11 (6). pp. 579-592. ISSN 1541-7786

Chen, M. H., Herzka, T. M., Zeeman, M. E., Plafker, K. S., Minderer, M., Castillo-Martin, M., Cordon-Cardo, C., Plafker, S. M., Trotman, L. C. (2013) PTEN levels are controlled by a nuclear transport receptor in lung cancer. Cancer Research, 73 (8 (Sup). p. 5258. ISSN 0008-5472

Chen, Y. C., Carter, H., Parla, J., Kramer, M., Goes, F. S., Pirooznia, M., Zandi, P. P., McCombie, W. R., Potash, J. B., Karchin, R. (2013) A Hybrid Likelihood Model for Sequence-Based Disease Association Studies. PLoS Genetics, 9 (1). ISSN 15537390 (ISSN)

Chen, Z., Jaafar, L., Agyekum, D. G., Xiao, H., Wade, M. F., Kumaran, R. I., Spector, D. L., Bao, G., Porteus, M. H., Dynan, W. S., Meiler, S. E. (2013) Receptor-mediated delivery of engineered nucleases for genome modification. Nucleic Acids Research, 41 (19). ISSN 03051048 (ISSN)

Chin, L., De Sauvage, F., Egeblad, M., Olive, K. P., Tuveson, D., Weiss, W. (2013) Recapitulating human cancer in a mouse. Nature Biotechnology, 31 (5). pp. 392-395. ISSN 10870156

Cho, H. J., Herzka, T., Zheng, W., Castillo-Martin, M., Cordon-Cardo, C., Trotman, L. C. (2013) Rapid Cap: A new generation of mouse models for prostate cancer. Cancer Research, 73 (8 (Sup). p. 4091. ISSN 0008-5472

Christensen, S. A., Nemchenko, A., Borrego, E., Murray, I., Sobhy, I. S., Bosak, L., Deblasio, S., Erb, M., Robert, C. A., Vaughn, K. A., Herrfurth, C., Tumlinson, J., Feussner, I., Jackson, D., Turlings, T. C., Engelberth, J., Nansen, C., Meeley, R., Kolomiets, M. V. (2013) The maize lipoxygenase, ZmLOX10, mediates green leaf volatile, jasmonate and herbivore-induced plant volatile production for defense against insect attack. Plant Journal, 74 (1). pp. 59-73. ISSN 09607412 (ISSN)

Churchland, A. K. (2013) Noise in decision making. In: European Science Foundation Exploratory Workshop , May 29th 2013, Sant Fruitós del Bages, Spain. (Unpublished)

Ciceri, G., Dehorter, N., Sols, I., Huang, Z. J., Maravall, M., Marín, O. (2013) Lineage-specific laminar organization of cortical GABAergic interneurons. Nature Neuroscience, 16 (9). pp. 1199-1210. ISSN 10976256

Cioni, J. M., Telley, L., Saywell, V., Cadilhac, C., Jourdan, C., Huber, A.B., Huang, J. Z., Jahannault-Talignani, C., Ango, F. (2013) SEMA3A Signaling Controls Layer-Specific Interneuron Branching in the Cerebellum. Current Biology, 23 (10). pp. 850-861. ISSN 09609822

Cipollini, M. L., Strahl, M., Gorden, N. S., Tomlinson, P., Ware, R. (2013) Vegetative survey of Martha's Meadow, an open limestone habitat in northwestern Georgia. Southeastern Naturalist, 12 (2). pp. 317-338. ISSN 15287092

Cipollini, M. L., Strahl, M., Gorden, N. S., Tomlinson, P., Ware, R. (2013) Vegetative survey of Martha's Meadow, an open limestone habitat in northwestern Georgia. Southeastern Naturalist, 12 (2). pp. 317-338. ISSN 15287092

Clark, P., Cohen, M., Danziger, S., Eisner, L., Herz-Roiphe, R., Iwahara, Y., Kafka, O., Kiprovski, A., Koones, G., Milich, A., Mittal, S., Richardson, A., Rubenstein, J., Shapiro, J., Stern, A., Zhao, Y. G., Hackett, J., Joshua-Tor, L. (2013) Modeling the Structure and Function of Argonaute in RNAi. Faseb Journal, 27. ISSN 0892-6638

Cleary, S. P., Jeck, W. R., Zhao, X. B., Chen, K., Selitsky, S. R., Savich, G. L., Tan, T. X., Wu, M. C., Getz, G., Lawrence, M. S., Parker, J. S., Li, J. Y., Powers, S., Kim, H., Fischer, S., Guindi, M., Ghanekar, A., Chiang, D. Y. (2013) Identification of Driver Genes in Hepatocellular Carcinoma by Exome Sequencing. Hepatology, 58 (5). pp. 1693-1702. ISSN 0270-9139

Cleary, S. P., Jeck, W. R., Zhao, X. B., Selitsky, S. R., Savich, G. L., Tan, T. X., Wu, M. C., Getz, G., Lawrence, M. S., Parker, J. S., Li, J. Y., Powers, S., Kim, H., Fischer, S. E., Guindi, M., Ghanekar, A., Chiang, D. Y. (2013) Identification of driver genes in hepatocellular carcinoma by exome sequencing. Cancer Research, 73 (8 (Sup). p. 4598. ISSN 0008-5472

Cléry, A., Sinha, R., Anczuków, O., Corrionero, A., Moursy, A., Daubner, G. M., Valcárcel, J., Krainer, A. R., Allain, F. H. T. (2013) Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition. Proceedings of the National Academy of Sciences of the United States of America, 110 (30). E2802-E2811. ISSN 00278424

Cornejo, O. E., Lefebure, T., Bitar, P. D., Lang, P., Richards, V. P., Eilertson, K., Do, T., Beighton, D., Zeng, L., Ahn, S. J., Burne, R. A., Siepel, A., Bustamante, C. D., Stanhope, M. J. (2013) Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Mol Biol Evol, 30 (4). pp. 881-93. ISSN 0737-4038

Cowell, Catherine F., Weigelt, Britta, Sakr, Rita A., Ng, Charlotte K. Y., Hicks, James, King, Tari A., Reis-Filho, Jorge S. (2013) Progression from ductal carcinoma in situ to invasive breast cancer: Revisited. Molecular Oncology. ISSN 1574-7891

Cowley, B. R., Kaufman, M. T., Butler, Z. S., Churchland, M. M., Ryu, S. I., Shenoy, K. V., Yu, B. M. (2013) DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural activity. Journal of Neural Engineering, 10 (6). ISSN 17412560 (ISSN)

Curley, A. A., Eggan, S. M., Lazarus, M. S., Huang, Z. J., Volk, D. W., Lewis, D. A. (2013) Role of glutamic acid decarboxylase 67 in regulating cortical parvalbumin and GABA membrane transporter 1 expression: Implications for schizophrenia. Neurobiology of Disease, 50 (1). pp. 179-186. ISSN 0969-9961

Czech, Benjamin, Preall, Jonathan B, McGinn, Jon, Hannon, Gregory J (2013) A Transcriptome-wide RNAi Screen in the Drosophila Ovary Reveals Factors of the Germline piRNA Pathway. Molecular Cell, 50 (5). pp. 749-761. ISSN 1097-2765

D

Dagnell, M., Frijhoff, J., Pader, I., Augsten, M., Boivin, B., Xu, J., Mandal, P. K., Tonks, N. K., Hellberg, C., Conrad, M., Arnér, E. S. J., Östman, A. (2013) Selective activation of oxidized PTP1B by the thioredoxin system modulates PDGF-ß receptor tyrosine kinase signaling. Proceedings of the National Academy of Sciences of the United States of America, 110 (33). pp. 13398-13403. ISSN 00278424

Dalton, J. E., Fear, J. M., Knott, S., Baker, B. S., McIntyre, L. M., Arbeitman, M. N. (2013) Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains. BMC Genomics, 14. ISSN 1471-2164

Danko, C. G., Hah, N., Luo, X., Martins, A. L., Core, L., Lis, J. T., Siepel, A., Kraus, W. L. (2013) Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells. Mol Cell, 50 (2). pp. 212-22. ISSN 1097-2765

Das, S., Fregoso, O. I., Krainer, A. R. (2013) A new path to oncogene-induced senescence: At the cross-roads of splicing and translation. Cell Cycle, 12 (10). ISSN 1551-4005 (Electronic)1551-4005 (Linking)

DeFelipe, J., López-Cruz, P. L., Benavides-Piccione, R., Bielza, C., Larrañaga, P., Anderson, S., Burkhalter, A., Cauli, B., Fairén, A., Feldmeyer, D., Fishell, G., Fitzpatrick, D., Freund, T. F., González-Burgos, G., Hestrin, S., Hill, S., Hof, P. R., Huang, J., Jones, E. G., Kawaguchi, Y., Kisvárday, Z., Kubota, Y., Lewis, D. A., Marín, O., Markram, H., McBain, C. J., Meyer, H. S., Monyer, H., Nelson, S. B., Rockland, K., Rossier, J., Rubenstein, J. L. R., Rudy, B., Scanziani, M., Shepherd, G. M., Sherwood, C. C., Staiger, J. F., Tamás, G., Thomson, A., Wang, Y., Yuste, R., Ascoli, G. A. (2013) New insights into the classification and nomenclature of cortical GABAergic interneurons. Nature Reviews Neuroscience, 14 (3). pp. 202-216. ISSN 1471003X (ISSN)

DeMatteo, R. P., Ballman, K. V., Antonescu, C. R., Corless, C., Kolesnikova, V., von Mehren, M., McCarter, M. D., Norton, J., Maki, R. G., Pisters, P. W., Demetri, G. D., Brennan, M. F., Owzar, K., American College of Surgeons Oncology Group Intergroup Adjuvant, Gist Study Team for the Alliance for Clinical Trials in Oncolog (2013) Long-term results of adjuvant imatinib mesylate in localized, high-risk, primary gastrointestinal stromal tumor: ACOSOG Z9000 (Alliance) intergroup phase 2 trial. Ann Surg, 258 (3). pp. 422-9. ISSN 1528-1140 (Electronic)0003-4932 (Linking)

Deck, Courtney A., McKay, Sheldon J., Fiedler, Tristan J., LeMoine, Christophe M. R., Kajimura, Makiko, Nawata, C. Michele, Wood, Chris M., Walsh, Patrick J. (2013) Transcriptome responses in the rectal gland of fed and fasted spiny dogfish shark (Squalus acanthias) determined by suppression subtractive hybridization. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics. ISSN 1744-117X

Demetri, G. D., Reichardt, P., Kang, Y. K., Blay, J. Y., Rutkowski, P., Gelderblom, H., Hohenberger, P., Leahy, M., von Mehren, M., Joensuu, H., Badalamenti, G., Blackstein, M., Le Cesne, A., Schoffski, P., Maki, R. G., Bauer, S., Nguyen, B. B., Xu, J., Nishida, T., Chung, J., Kappeler, C., Kuss, I., Laurent, D., Casali, P. G., investigators, Grid study (2013) Efficacy and safety of regorafenib for advanced gastrointestinal stromal tumours after failure of imatinib and sunitinib (GRID): an international, multicentre, randomised, placebo-controlled, phase 3 trial. Lancet, 381 (9863). pp. 295-302. ISSN 1474-547X (Electronic)0140-6736 (Linking)

Devor, Anna, Bandettini, Peter A, Boas, David A, Bower, James M, Buxton, Richard B, Cohen, Lawrence B, Dale, Anders M, Einevoll, Gaute T, Fox, Peter T, Franceschini, Maria Angela, Friston, Karl J, Fujimoto, James G, Geyer, Mark A, Greenberg, Joel H, Halgren, Eric, Hämäläinen, Matti S, Helmchen, Fritjof, Hyman, Bradley T, Jasanoff, Alan, Jernigan, Terry L, Judd, Lewis L, Kim, Seong-Gi, Kleinfeld, David, Kopell, Nancy J, Kutas, Marta, Kwong, Kenneth K, Larkum, Matthew E, Lo, Eng H, Magistretti, Pierre J, Mandeville, Joseph B, Masliah, Eliezer, Mitra, Partha P, Mobley, William C, Moskowitz, Michael A, Nimmerjahn, Axel, Reynolds, John H, Rosen, Bruce R, Salzberg, Brian M, Schaffer, Chris B, Silva, Gabriel A, So, Peter T C., Spitzer, Nicholas C, Tootell, Roger B, Van Essen, David C, Vanduffel, Wim, Vinogradov, Sergei A, Wald, Lawrence L, Wang, Lihong V, Weber, Bruno, Yodh, Arjun G (2013) The Challenge of Connecting the Dots in the B.R.A.I.N. Neuron, 80 (2). pp. 270-274. ISSN 0896-6273

Dharmawardhana, P., Ren, L. Y., Amarasinghe, V., Monaco, M., Thomason, J., Ravenscroft, D., McCouch, S., Ware, D., Jaiswal, P. (2013) A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress. Rice, 6 (1). pp. 1-15. ISSN 1939-8425

Dickson, M. A., Okuno, S. H., Keohan, M. L., Maki, R. G., D'Adamo, D. R., Akhurst, T. J., Antonescu, C. R., Schwartz, G. K. (2013) Phase II study of the HSP90-inhibitor BIIB021 in gastrointestinal stromal tumors. Ann Oncol, 24 (1). pp. 252-7. ISSN 1569-8041 (Electronic)0923-7534 (Linking)

Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T. R. (2013) STAR: ultrafast universal RNA-seq aligner. Bioinformatics, 29 (1). pp. 15-21. ISSN 1367-4803

Donnenberg, A. D., Hicks, J. B., Wigler, M., Donnenberg, V. S. (2013) The Cancer Stem Cell: Cell Type or Cell State? Cytometry Part A, 83A (SI 1). pp. 5-7. ISSN 1552-4922

Doolittle, W. F., Fraser, P., Gerstein, M. B., Graveley, B. R., Henikoff, S., Huttenhower, C., Oshlack, A., Ponting, C. P., Rinn, J. L., Schatz, M. C., Ule, J., Weigel, D., Weinstock, G. M. (2013) Sixty years of genome biology. Genome Biology, 14 (4). ISSN 1474-7596

Dos Santos, C. O., Rebbeck, C., Rozhkova, E., Valentine, A., Samuels, A., Kadiri, L. R., Osten, P., Harris, E. Y., Uren, P. J., Smith, A. D., Hannon, G. J. (2013) Molecular hierarchy of mammary differentiation yields refined markers of mammary stem cells. Proceedings of the National Academy of Sciences of the United States of America, 110 (18). pp. 7123-7130. ISSN 0027-8424

Dowen, Jill M., Bilodeau, Steve, Orlando, David A., Hübner, Michael R., Abraham, Brian J., Spector, David L., Young, Richard A. (2013) Multiple Structural Maintenance of Chromosome Complexes at Transcriptional Regulatory Elements. Stem Cell Reports, 1 (5). pp. 371-378. ISSN 2213-6711

Dubnau, J., Chiang, A. S. (2013) Systems memory consolidation in Drosophila. Current Opinion in Neurobiology, 23 (1). pp. 84-91. ISSN 0959-4388

E

Ebbesen, Saya H. (2013) RNAi Mouse Models of Breast Cancer Tumor Suppressor Genes. PhD thesis, Cold Spring Harbor Laboratory.

Eckersley-Maslin, M. A., Bergmann, J. H., Lazar, Z., Spector, D. L. (2013) Lamin A/C is Expressed in Pluripotent Mouse Embryonic Stem Cells. Nucleus, 4 (1). pp. 53-60. ISSN 1949-1042 (Electronic)1949-1042 (Linking)

Eifert, C., Wang, X., Kokabee, L., Kourtidis, A., Jain, R., Gerdes, M. J., Conklin, D. S. (2013) A novel isoform of the B cell tyrosine kinase BTK protects breast cancer cells from apoptosis. Genes Chromosomes and Cancer, 52 (10). pp. 961-975. ISSN 10452257

El-Helou, V., Chabot, A., Gosselin, H., Villeneuve, L., Clavet-Lanthier, M. E., Tanguay, J. F., Enikolopov, G., Fernandes, K. J. L., Jasmin, J. F., Calderone, A. (2013) Cardiac resident nestin+ cells participate in reparative vascularisation. Journal of Cellular Physiology, 228 (9). pp. 1844-1853. ISSN 0021-9541

Engström, P. G., Steijger, T., Sipos, B., Grant, G. R., Kahles, A., Rätsch, G., Goldman, N., Hubbard, T. J., Harrow, J., Guigó, R., Bertone, P., Alioto, T., Behr, J., Bohnert, R., Campagna, D., Davis, C. A., Dobin, A., Gingeras, T. R., Jean, G., Kosarev, P., Li, S., Liu, J., Mason, C. E., Molodtsov, V., Ning, Z., Ponstingl, H., Prins, J. F., Ribeca, P., Seledtsov, I., Solovyev, V., Valle, G., Vitulo, N., Wang, K., Wu, T. D., Zeller, G. (2013) Systematic evaluation of spliced alignment programs for RNA-seq data. Nature Methods, 10 (12). pp. 1185-1191. ISSN 15487091 (ISSN)

Ermakova, Y. G., Bilan, D. S., Mishina, N., Markvicheva, K. N., Enikolopov, G., Belousov, V. V. (2013) Genetically encoded red fluorescent probe for intracellular H2O2 detection. Febs Journal, 280 (S1). pp. 606-607. ISSN 1742-464X

F

Faehnle, Christopher R, Elkayam, Elad, Haase, Astrid D, Hannon, Gregory J, Joshua-Tor, Leemor (2013) The Making of a Slicer: Activation of Human Argonaute-1. Cell Reports, 3 (6). pp. 1901-1909. ISSN 2211-1247

Fan, G., Lin, G., Lucito, R., Tonks, N. K. (2013) Protein Tyrosine Phosphatase 1B Antagonized Signaling by IGF-1 Receptor and BRK/PTK6 in Ovarian Cancer Cells. Journal of Biological Chemistry, 288 (34). pp. 24923-29434. ISSN 0021-9258

Fang, Han (2013) Finding the sources of missing heritability in a yeast cross. Journal Club. (Unpublished)

Fang, Han (2013) Whole Genome Sequencing in support of Wellness and Health Maintenance. Journal Club. (Unpublished)

Fang, Han, Wu, Yiyang, O'Rawe, Jason, Mittelman, David, Lyon, Gholson J. (2013) Whole genome sequencing analysis of a family with familial dysautonomia and neuropsychiatric symptoms. In: Cold Spring Harbor Laboratory Precision Medicine Meeting, November 2013, Cold Spring Harbor, New York. (Unpublished)

Feig, C., Jones, J. O., Kraman, M., Wells, R. J. B., Deonarine, A., Chan, D. S., Connell, C. M., Roberts, E. W., Zhao, Q., Caballero, O. L., Teichmann, S. A., Janowitz, T., Jodrell, D. I., Tuveson, D. A., Fearon, D. T. (2013) Targeting CXCL12 from FAP-expressing carcinoma-associated fibroblasts synergizes with anti-PD-L1 immunotherapy in pancreatic cancer. Proceedings of the National Academy of Sciences of the United States of America, 110 (50). pp. 20212-20217. ISSN 00278424 (ISSN)

Feigin, M. E. (2013) Harnessing the genome for characterization of G-protein coupled receptors in cancer pathogenesis. FEBS J, 280 (19). pp. 4729-38. ISSN 1742-4658 (Electronic)1742-464X (Linking)

Fein, M. R., Egeblad, M. (2013) Caught in the act: revealing the metastatic process by live imaging. Disease Models and Mechanisms, 6 (3). pp. 580-93. ISSN 1754-8411 (Electronic)1754-8403 (Linking)

Ferchmin, P. A., Pérez, D., Castro Alvarez, W., Penzo, M. A., Maldonado, H. M., Eterovic, V. A. (2013) γ-Aminobutyric acid type a receptor inhibition triggers a nicotinic neuroprotective mechanism. Journal of Neuroscience Research, 91 (3). pp. 416-425. ISSN 03604012

Flesken-Nikitin, A., Hwang, C. I., Cheng, C. Y., Michurina, T. V., Enikolopov, G., Nikitin, A. Yu (2013) Ovarian surface epithelium at the junction area contains a cancer-prone stem cell niche. Nature, 495 (7440). pp. 241-5. ISSN 00280836 (ISSN)

Fregoso, O. I., Das, S., Akerman, M., Krainer, A. R. (2013) Splicing-Factor Oncoprotein SRSF1 Stabilizes p53 via RPL5 and Induces Cellular Senescence. Molecular Cell, 50 (1). pp. 56-66. ISSN 1097-2765

G

Gakamsky, A., Oron, E., Valente, D., Mitra, P. P., Segal, D., Benjamini, Y., Golani, I. (2013) The Angular Interval between the Direction of Progression and Body Orientation in Normal, Alcohol- and Cocaine Treated Fruit Flies. PLoS ONE, 8 (10). ISSN 19326203 (ISSN)

Gann, A., Witkowski, J. A. (2013) DNA: Archives reveal Nobel nominations. Nature, 496 (7446). p. 434. ISSN 00280836 (ISSN)

Garbay, D., Maki, R. G., Blay, J. Y., Isambert, N., Piperno Neumann, S., Blay, C., Zanardi, E., Boudou-Rouquette, P., Bozec, L., Duffaud, F., Bertucci, F., Italiano, A. (2013) Advanced soft-tissue sarcoma in elderly patients: patterns of care and survival. Ann Oncol, 24 (7). pp. 1924-30. ISSN 1569-8041 (Electronic)0923-7534 (Linking)

Gillis, J., Pavlidis, P. (2013) Assessing identity, redundancy and confounds in Gene Ontology annotations over time. Bioinformatics, 29 (4). pp. 476-82. ISSN 1367-4811 (Electronic)1367-4803 (Linking)

Gillis, J., Pavlidis, P. (2013) Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA). BMC Bioinformatics, 14 (Suppl). S15. ISSN 1471-2105 (Electronic)1471-2105 (Linking)

Gillis, J., Pavlidis, P. (2013) Cross-validation calculation from "Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks Gillis, J. and Pavlidis, P. (2012) PLoS Computational Biology, 8 (3). [Dataset]

Gillis, J., Pavlidis, P. (2013) Data from "Assessing identity, redundancy and confounds in Gene Ontology annotations over time". [Dataset]

Gillis, J., Pavlidis, P. (2013) Use case: The postsynaptic proteome, from "Assessing identity, redundancy and confounds in Gene Ontology annotations over time". [Dataset]

Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P. (2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. Quantitative Biology, 1 (1). pp. 91-100. ISSN 2095-4689

Grochola, Lukasz F., Zeron-Medina, Jorge, Repapi, Emmanouela, Finlayson, Alexander E., Cai, Ying, Atwal, Gurinder Singh, Bond, Gareth L. (2013) The Inheritance of p53. In: p53 in the Clinics. Springer New York, pp. 25-46. ISBN 978-1-4614-3675-1

Gronau, I., Arbiza, L., Mohammed, J., Siepel, A. (2013) Inference of natural selection from interspersed genomic elements based on polymorphism and divergence. Mol Biol Evol, 30 (5). pp. 1159-71. ISSN 0737-4038

Gruntman, E., Turner, G. C. (2013) Integration of the olfactory code across dendritic claws of single mushroom body neurons. Nature Neuroscience, 16 (12). pp. 1821-1829. ISSN 10976256

Guha, S., Rees, E., Darvasi, A., Ivanov, D., Ikeda, M., Bergen, S. E., Magnusson, P. K., Cormican, P., Morris, D., Gill, M., Cichon, S., Rosenfeld, J. A., Lee, A., Gregersen, P. K., Kane, J. M., Malhotra, A. K., Rietschel, M., Nothen, M. M., Degenhardt, F., Priebe, L., Breuer, R., Strohmaier, J., Ruderfer, D. M., Moran, J. L., Chambert, K. D., Sanders, A. R., Shi, J. X., Kendler, K., Riley, B., O'Neill, T., Walsh, D., Malhotra, D., Corvin, A., Purcell, S., Sklar, P., Iwata, N., Hultman, C. M., Sullivan, P. F., Sebat, J., McCarthy, S., Gejman, P. V., Levinson, D. F., Owen, M. J., O'Donovan, M. C., Lencz, T., Kirov, G. (2013) Implication of a Rare Deletion at Distal 16p11.2 in Schizophrenia. Jama Psychiatry, 70 (3). pp. 253-260. ISSN 2168-622X

Gutschner, T., Hammerle, M., Eissmann, M., Hsu, J., Kim, Y., Hung, G. N., Revenko, A., Arun, G., Stentrup, M., Gross, M., Zornig, M., MacLeod, A. R., Spector, D. L., Diederichs, S. (2013) The long non-coding RNA MALAT1 is an essential gene regulator for lung cancer metastasis in a novel human knockout model. Cancer Research, 73 (8 (Sup). p. 1121. ISSN 0008-5472

Gutschner, T., Hammerle, M., Eißmann, M., Hsu, J., Kim, Y., Hung, G., Revenko, A., Arun, G., Stentrup, M., Groß, M., Zörnig, M., MacLeod, A. R., Spector, D. L., Diederichs, S. (2013) The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Research, 73 (3). pp. 1180-1189. ISSN 00085472 (ISSN)

Guzzardo, P. M., Muerdter, F., Hannon, G. J. (2013) The piRNA pathway in flies: highlights and future directions. Curr Opin Genet Dev, 23 (1). pp. 44-52. ISSN 1879-0380 (Electronic)0959-437X (Linking)

Guzzardo, Paloma M. (2013) Identification and characterization of novel components of the Drosophila piRNA pathway. PhD thesis, Cold Spring Harbor Laboratory.

H

Hansen, K. B., Tajima, N., Risgaard, R., Perszyk, R. E., Jorgensen, L., Vance, K. M., Ogden, K. K., Clausen, R. P., Furukawa, H., Traynelis, S. F. (2013) Structural determinants of agonist efficacy at the glutamate binding site of n-methyl-d-Aspartate receptorss. Molecular Pharmacology, 84 (1). pp. 114-127. ISSN 0026895X

Hauser, F., Chen, W. X., Deinlein, U., Chang, K., Ossowski, S., Fitz, J., Hannon, G. J., Schroeder, J. I. (2013) A Genomic-Scale Artificial MicroRNA Library as a Tool to Investigate the Functionally Redundant Gene Space in Arabidopsis. Plant Cell, 25 (8). pp. 2848-2863. ISSN 1040-4651

Henn, F. A. (2013) Deep Brain Stimulation of the Lateral Habenula in Treatment Resistant Depression. Biological Psychiatry, 73 (9). 231S-231S. ISSN 0006-3223

Hensley, M. L., Wathen, J. K., Maki, R. G., Araujo, D. M., Sutton, G., Priebat, D. A., George, S., Soslow, R. A., Baker, L. H. (2013) Adjuvant therapy for high-grade, uterus-limited leiomyosarcoma: results of a phase 2 trial (SARC 005). Cancer, 119 (8). pp. 1555-61. ISSN 1097-0142 (Electronic)0008-543X (Linking)

Hromadka, T., Zador, A. M., DeWeese, M. R. (2013) Up states are rare in awake auditory cortex. Journal of Neurophysiology, 109 (8). pp. 1989-1995. ISSN 0022-3077

Hsu, H. C., Wang, C. L., Wang, M., Yang, N., Chen, Z., Sternglanz, R., Xu, R. M. (2013) Structural basis for allosteric stimulation of Sir2 activity by sir4 binding. Genes and Development, 27 (1). pp. 64-73. ISSN 08909369

Hu, J., Ho, A. L., Yuan, L., Hu, B., Hua, S., Hwang, S. S., Zhang, J., Hu, T., Zheng, H., Gan, B., Wu, G., Wang, Y. A., Chin, L., DePinho, R. A. (2013) Neutralization of terminal differentiation in gliomagenesis. Proceedings of the National Academy of Sciences of the United States of America, 110 (36). pp. 14520-14527. ISSN 00278424 (ISSN)

Hua, Yimin, Sahashi, Kentaro, Rigo, Frank, Hung, Gene, Bennett, C. Frank, Krainer, AdrianR (2013) Correction of RNA Splicing with Antisense Oligonucleotides as a Therapeutic Strategy for a Neurodegenerative Disease. In: Chembiomolecular Science. Springer Japan, pp. 301-313. ISBN 978-4-431-54037-3

Huang, C., Wang, P., Xie, Z., Wang, L., Zhong, Y. (2013) The differential requirement of mushroom body α/β subdivisions in long-term memory retrieval in Drosophila. Protein and Cell, 4 (7). pp. 512-519. ISSN 1674800X

Huang, Z. J., Zeng, H. (2013) Genetic Approaches to Neural Circuits in the Mouse. Annual Review of Neuroscience, 36. ISSN 0147-006X

Hubner, M. R., Eckersley-Maslin, M. A., Spector, D. L. (2013) Chromatin organization and transcriptional regulation. Current Opinion in Genetics & Development, 23 (2). pp. 89-95. ISSN 0959-437X

I

Italiano, A., Kind, M., Cioffi, A., Maki, R. G., Bui, B. (2013) Clinical activity of sunitinib in patients with advanced desmoplastic round cell tumor: a case series. Target Oncol, 8 (3). pp. 211-3. ISSN 1776-260X (Electronic)1776-2596 (Linking)

Italiano, A., Mir, O., Cioffi, A., Palmerini, E., Piperno-Neumann, S., Perrin, C., Chaigneau, L., Penel, N., Duffaud, F., Kurtz, J. E., Collard, O., Bertucci, F., Bompas, E., Le Cesne, A., Maki, R. G., Ray Coquard, I., Blay, J. Y. (2013) Advanced chondrosarcomas: role of chemotherapy and survival. Ann Oncol, 24 (11). pp. 2916-22. ISSN 1569-8041 (Electronic)0923-7534 (Linking)

Italiano, A., Saada, E., Cioffi, A., Poulette, S., Bouchet, S., Molimard, M., Adenis, A., Isambert, N., Collard, O., Le Cesne, A., Maki, R. G., Bui, B. (2013) Treatment of advanced gastrointestinal stromal tumors in patients over 75 years old: clinical and pharmacological implications. Target Oncol, 8 (4). pp. 295-300. ISSN 1776-260X (Electronic)1776-2596 (Linking)

J

Jacobetz, M. A., Chan, D. S., Neesse, A., Bapiro, T. E., Cook, N., Frese, K. K., Feig, C., Nakagawa, T., Caldwell, M. E., Zecchini, H. I., Lolkema, M. P., Jiang, P., Kultti, A., Thompson, C. B., Maneval, D. C., Jodrell, D. I., Frost, G. I., Shepard, H. M., Skepper, J. N., Tuveson, D. A. (2013) Hyaluronan impairs vascular function and drug delivery in a mouse model of pancreatic cancer. Gut, 62 (1). pp. 112-20. ISSN 1468-3288 (Electronic)0017-5749 (Linking)

Jakkamsetti, Vikram, Tsai, Nien-Pei, Gross, Christina, Molinaro, Gemma, Collins, Katie A, Nicoletti, Ferdinando, Wang, Kuan H, Osten, Pavel, Bassell, Gary J, Gibson, Jay R, Huber, Kimberly M (2013) Experience-Induced Arc/Arg3.1 Primes CA1 Pyramidal Neurons for Metabotropic Glutamate Receptor-Dependent Long-Term Synaptic Depression. Neuron, 80 (1). pp. 72-79. ISSN 0896-6273

Jiang, K., Liberatore, K. L., Park, S. J., Alvarez, J. P., Lippman, Z. B. (2013) Tomato yield heterosis is triggered by a dosage sensitivity of the florigen pathway that fine-tunes shoot architecture. PLoS Genetics, 9 (12). e1004043. ISSN 1553-7390

K

Kaaij, L. T. J., van de Wetering, M., Fang, F., Decato, B., Molaro, A., van de Werken, H. J. G., van Es, J. H., Schuijers, J., de Wit, E., de Laat, W., Hannon, G. J., Clevers, H. C., Smith, A. D., Ketting, R. F. (2013) DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus. Genome Biology, 14 (5). ISSN 1465-6906

Kamalakaran, Sitharthan, Varadan, Vinay, Janevski, Angel, Banerjee, Nilanjana, Tuck, David, McCombie, Richard, Dimitrova, Nevenka, Harris, Lyndsay N. (2013) Translating Next Generation Sequencing to practice: opportunities and necessary steps. Molecular Oncology, 7 (4). pp. 743-755. ISSN 1574-7891

Kamoun, Malek, Filali, Mohammed, Murray, Michael V., Awasthi, Sita, Wadzinski, Brian E. (2013) Protein phosphatase 2A family members (PP2A and PP6) associate with U1 snRNP and the spliceosome during pre-mRNA splicing. Biochemical and Biophysical Research Communications. ISSN 0006-291X

Karginov, F. V., Hannon, G. J. (2013) Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates. Genes and Development, 27 (14). pp. 1624-32. ISSN 08909369 (ISSN)

Karten, H. J., Brzozowska-Prechtl, A., Lovell, P. V., Tang, D. D., Mello, C. V., Wang, H., Mitra, P. P. (2013) Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas. Journal of Comparative Neurology, 521 (16). pp. 3702-15. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)

Kaufman, M. T., Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496 (7444). pp. 172-173. ISSN 00280836 (ISSN)

Kaufman, M. T., Churchland, M. M., Shenoy, K. V. (2013) The roles of monkey M1 neuron classes in movement preparation and execution. Journal of Neurophysiology, 110 (4). pp. 817-825. ISSN 00223077

Kawahara, Y., de la Bastide, M., Hamilton, J. P., Kanamori, H., McCombie, W. R., Ouyang, S., Schwartz, D. C., Tanaka, T., Wu, J., Zhou, S., Childs, K. L., Davidson, R. M., Lin, H., Quesada-Ocampo, L., Vaillancourt, B., Sakai, H., Lee, S. S., Kim, J., Numa, H., Itoh, T., Buell, C. R., Matsumoto, T. (2013) Improvement of the oryza sativa nipponbare reference genome using next generation sequence and optical map data. Rice, 6 (1). pp. 3-10. ISSN 19398425 (ISSN)

Kepecs, A. (2013) The uncertainty of it all. Nature Neuroscience, 16 (6). pp. 660-2. ISSN 1097-6256

Khurana, S., Li, W. K. (2013) Baptisms of fire or death knells for acute-slice physiology in the age of 'omics' and light? Reviews in the Neurosciences, 24 (5). pp. 527-536. ISSN 0334-1763

Khurana, S., Siddiqi, O. (2013) Olfactory responses of drosophila larvae. Chemical Senses, 38 (4). pp. 315-323. ISSN 0379864X (ISSN)

Kiani, R., Churchland, A. K., Shadlen, M. N. (2013) Integration of Direction Cues Is Invariant to the Temporal Gap between Them. Journal of Neuroscience, 33 (42). pp. 16483-9. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Kim, M. K., Kim, S. Y. (2013) Ascorbic acid enhances the generation of germline chimeras from C57BL/6 ES cells using tetraploid complementation. Transgenic Research, 22 (1). pp. 222-223. ISSN 0962-8819

Kim, M. V., Ouyang, W., Liao, W., Zhang, M. Q., Li, M. O. (2013) The transcription factor Foxo1 controls central-memory CD8+ T cell responses to infection. Immunity, 39 (2). pp. 286-97. ISSN 1074-7613

Kim, S. Y., Cordeiro, M. H., Serna, V. A., Ebbert, K., Butler, L. M., Sinha, S., Mills, A. A., Woodruff, T. K., Kurita, T. (2013) Rescue of platinum-damaged oocytes from programmed cell death through inactivation of the p53 family signaling network. Cell Death and Differentiation, 20 (8). pp. 987-997.

Kim, Y., Pradhan, K., Fitzgerald, G., Umadevi Venkataraju, K, Osten, P. (2013) Serial two-photon tomography-based whole-brain activity mapping in cntnap2 ko mouse model of autism. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

King, Bryan, Trimarchi, Thomas, Reavie, Linsey, Xu, Luyao, Mullenders, Jasper, Ntziachristos, Panagiotis, Aranda-Orgilles, Beatriz, Perez-Garcia, Arianne, Shi, Junwei, Vakoc, Christopher, Sandy, Peter, Shen, Steven S, Ferrando, Adolfo, Aifantis, Iannis (2013) The Ubiquitin Ligase FBXW7 Modulates Leukemia-Initiating Cell Activity by Regulating MYC Stability. Cell, 153 (7). pp. 1552-1566. ISSN 0092-8674

Kinney, J. B., Atwal, G. S. (2013) Parametric inference in the large data limit using maximally informative models. Arxiv. (Unpublished)

Knauer, S., Holt, A.L., Rubio-Somoza, I., Tucker, E. J., Hinze, A., Pisch, M., Javelle, M., Timmermans, M. C. P., Tucker, M. R., Laux, T. (2013) A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem. Developmental Cell. ISSN 15345807

Krasnitz, A., Sun, G., Andrews, P., Wigler, M. (2013) Target inference from collections of genomic intervals. Proceedings of the National Academy of Sciences of the United States of America, 110 (25). E2271-E2278. ISSN 0027-8424

Krishnan, N., Bencze, G., Cohen, P., Tonks, N. K. (2013) The anti-inflammatory compound BAY 11-7082 is a potent inhibitor of Protein Tyrosine Phosphatases. FEBS Journal, 280 (12). pp. 2830-2841. ISSN 1742-464X

Kudla, Marek (2013) Quantitative description of microRNA target site occupancy in mouse embryonic stem cells and derived cells of neuronal lineage. PhD thesis, Cold Spring Harbor Laboratory.

Kuhn, C. D., Joshua-Tor, L. (2013) Eukaryotic Argonautes come into focus. Trends in Biochemical Sciences, 38 (5). pp. 263-271. ISSN 09680004 (ISSN)

Kuhn, P., Dago, A. E., Stepansky, A., Carlsson, A., Felch, N., Luttgen, M., Kolatkar, A., Hicks, J., Gross, M. E. (2013) Sequential monitoring of single-cell copy number variation in metastatic prostate cancer. Cancer Research, 73 (8 (Sup). p. 4599. ISSN 0008-5472

Kumari, S., Ware, D. (2013) Genome-Wide Computational Prediction and Analysis of Core Promoter Elements across Plant Monocots and Dicots. PLoS ONE, 8 (10). Art no. e79011. ISSN 1932-6203

Kvitsiani, D., Ranade, S., Hangya, B., Taniguchi, H., Huang, J. Z., Kepecs, A. (2013) Distinct behavioural and network correlates of two interneuron types in prefrontal cortex. Nature, 498 (7454). pp. 363-366. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

L

Lakhina, V., Subramanian, L., Huilgol, D., Shetty, A. S., Vaidya, V. A., Tole, S. (2013) Seizure evoked regulation of LIM-HD genes and co-factors in the postnatal and adult hippocampus. F1000 Research, 2. p. 205. ISSN 20461402 (ISSN)

Lam, T. H., Shen, M., Chia, J. M., Chan, S. H., Ren, E. C. (2013) Population-specific recombination sites within the human MHC region. Heredity, 111 (2). pp. 131-138. ISSN 0018067X

Laronda, Monica M., Unno, Kenji, Ishi, Kazutomo, Serna, Vanida A., Butler, Lindsey M., Mills, Alea A., Orvis, Grant D., Behringer, Richard R., Deng, Chuxia, Sinha, Satrajit, Kurita, Takeshi (2013) Diethylstilbestrol induces vaginal adenosis by disrupting SMAD/RUNX1-mediated cell fate decision in the Müllerian duct epithelium. Developmental Biology, 381 (1). pp. 5-16. ISSN 0012-1606

Lau, B. Y. B., Fogerson, S. M., Walsh, R. B., Morgan, J. R. (2013) Cyclic AMP promotes axon regeneration, lesion repair and neuronal survival in lampreys after spinal cord injury. Experimental Neurology, 250. pp. 31-42. ISSN 00144886 (ISSN)

Lee, S., Kruglikov, I., Huang, Z. J., Fishell, G., Rudy, B. (2013) A disinhibitory circuit mediates motor integration in the somatosensory cortex. Nature Neuroscience, 16. pp. 1662-1670. ISSN 10976256 (ISSN)

Levine, Jesse (2013) Pluripotent Stem Cells Induced from Mouse Somatic Cells by Small- Molecule Compounds. Journal Club. (Unpublished)

Li, H., Penzo, M. A., Taniguchi, H., Kopec, C. D., Huang, Z. J., Li, B. (2013) Experience-dependent modification of a central amygdala fear circuit. Nature Neuroscience, 16 (3). pp. 332-339. ISSN 1097-6256

Li, K., Zhou, T., Liao, L., Yang, Z., Wong, C., Henn, F., Malinow, R., Yates Iii, J. R., Hu, H. (2013) βCaMKII in lateral habenula mediates core symptoms of depression. Science, 341 (6149). pp. 1016-1020. ISSN 00368075 (ISSN)

Li, L., Petsch, K., Shimizu, R., Liu, S., Xu, W. W., Ying, K., Yu, J., Scanlon, M. J., Schnable, P. S., Timmermans, M. C. P., Springer, N. M., Muehlbauer, G. J. (2013) Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. PLoS Genetics, 9 (1). Article number e1003202. ISSN 15537390 (ISSN)

Li, P., Du, F., Yuelling, L. W., Lin, T., Muradimova, R. E., Tricarico, R., Wang, J., Enikolopov, G., Bellacosa, A., Wechsler-Reya, R. J., Yang, Z. J (2013) A population of Nestin-expressing progenitors in the cerebellum exhibits increased tumorigenicity. Nature Neuroscience. ISSN 10976256 (ISSN)

Li, W., Cressy, M., Qin, H., Fulga, T., Van Vactor, D., Dubnau, J. (2013) MicroRNA-276a Functions in Ellipsoid Body and Mushroom Body Neurons for Naive and Conditioned Olfactory Avoidance in Drosophila. Journal of Neuroscience, 33 (13). pp. 5821-33. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Li, W., Prazak, L., Chatterjee, N., Gruninger, S., Krug, L., Theodorou, D., Dubnau, J. (2013) Activation of transposable elements during aging and neuronal decline in Drosophila. Nature Neuroscience, 16. pp. 529-531. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Lindtner, C., Scherer, T., Zielinski, E., Filatova, N., Fasshauer, M., Tonks, N. K., Puchowicz, M., Buettner, C. (2013) Binge Drinking Induces Whole-Body Insulin Resistance by Impairing Hypothalamic Insulin Action. Science Translational Medicine, 5 (170). ISSN 1946-6234

Lituiev, D. S., Krohn, N. G., Muller, B., Jackson, D., Hellriegel, B., Dresselhaus, T., Grossniklaus, U. (2013) Theoretical and experimental evidence indicates that there is no detectable auxin gradient in the angiosperm female gametophyte. Development, 140 (22). pp. 4544-4553. ISSN 0950-1991

Livyatan, I., Harikumar, A., Nissim-Rafinia, M., Duttagupta, R., Gingeras, T. R., Meshorer, E. (2013) Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation. Nucleic Acids Research, 41 (12). pp. 6300-6315. ISSN 03051048 (ISSN)

Lo, C., Liu, R., Lee, J., Robasky, K., Byrne, S., Lucchesi, C., Aach, J., Church, G., Bafna, V., Zhang, K. (2013) On the design of clone-based haplotyping. Genome Biol, 14 (9). R100. ISSN 1465-6914 (Electronic)1465-6906 (Linking)

Lodha, M., Marco, C. F., Timmermans, M. C. (2013) The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2. Genes & Development, 27 (6). pp. 596-601. ISSN 0890-9369

Lovén, J., Hoke, H. A, Lin, C. Y., Lau, A. W., Orlando, D. A., Vakoc, C. R., Bradner, J. E., Lee, T. I., Young, R. A. (2013) Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers. Cell, 153 (2). pp. 320-334. ISSN 0092-8674

Lu, X. W., Wontakal, S. N., Kavi, H., Kim, B. J., Guzzardo, P. M., Emelyanov, A. V., Xu, N., Hannon, G. J., Zavadil, J., Fyodorov, D. V., Skoultchi, A. I. (2013) Drosophila H1 Regulates the Genetic Activity of Heterochromatin by Recruitment of Su(var)3-9. Science, 340 (6128). pp. 78-81. ISSN 0036-8075

Lujambio, A., Akkari, L., Simon, J., Grace, D., Tschaharganeh, D. F., Bolden, J. E., Zhao, Z., Thapar, V., Joyce, J. A., Krizhanovsky, V., Lowe, S. W. (2013) Non-cell-autonomous tumor suppression by p53. Cell, 153 (2). pp. 449-460.

Luo, M. C., Gu, Y. Q., You, F. M., Deal, K. R., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C. M., Zhang, Y., McGuire, P. E., Pasternak, S., Stein, J. C., Ware, D., Kramer, M., McCombie, W. R., Kianian, S. F., Martis, M. M., Mayer, K. F. X., Sehgal, S. K., Li, W., Gill, B. S., Bevan, M. W., Šimková, H., Doležel, J., Weining, S., Lazo, G. R., Anderson, O. D., Dvorak, J. (2013) A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proceedings of the National Academy of Sciences of the United States of America, 110 (19). pp. 7940-7945. ISSN 00278424

Lyon, Gholson J. (2013) Advancing Precision Medicine through clinical grade whole genome sequencing, return of results and deep brain stimulation. [Video] (Unpublished)

Lyon, Gholson J. (2013) Advancing Precision Medicine through clinical grade whole genome sequencing, return of results and deep brain stimulation. In: Precision Medicine: Personal Genomes & Pharmacogenomics, Nov 13th - Nov 16th 2103, Cold Spring Harbor, NY . (Unpublished)

Lyon, Gholson J. (2013) Amino-terminal acetylation of proteins by N-terminal acetyltransferases: mechanisms and relevance to human genetic diseases. In: Stony Brook University Department of Chemistry Seminar Series, Oct 3rd 2013, Stony Brook, NY. (Unpublished)

Lyon, Gholson J. (2013) Amino-terminal acetylation of proteins: role in human disease and biology. In: Stony Brook University Department of Pharmacology Seminar Series, Oct 29th 2013, Stony Brook, NY. (Unpublished)

Lyon, Gholson J. (2013) Cambridge HealthTech Institute Clinical Genomics Podcast: Highlights from the Upcoming Clinical Exome Sequencing Conference. [Audio]

Lyon, Gholson J. (2013) The Chaperone-Like Protein HYPK Acts Together with NatA in Cotranslational N-Terminal Acetylation and Prevention of Huntingtin Aggregation. Journal Club. (Unpublished)

Lyon, Gholson J. (2013) Childhood-­onset Neuropsychiatric Disorders. In: FarGen Summit (Faroe Genome Project), Sept 19th-20th 2013, Tórshavn, The Faroe Islands. (Unpublished)

Lyon, Gholson J. (2013) Clinical genetics and other aspects of neuropsychiatric disorders. In: The International Behavioural and Neural Genetics Society (IBANGS), Genes, Brain & Behavior 15th Annual Meeting, May 20th-24th 2013, Leuven, Belgium. (Unpublished)

Lyon, Gholson J. (2013) Clinical genetics and other aspects of neuropsychiatric disorders. In: NGS Translate World Forum, May 28th-31st 2013, Boston, MA. (Unpublished)

Lyon, Gholson J. (2013) "Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway". Journal Club. (Unpublished)

Lyon, Gholson J. (2013) Controversies in Giving Data Back. In: The Future of Genomic Medicine VI, March 7th-8th 2013, La Jolla, CA. (Unpublished)

Lyon, Gholson J. (2013) "Epidemiology, epigenetics and the ‘Gloomy Prospect’: embracing randomness in population health research and practice". Journal Club. (Unpublished)

Lyon, Gholson J. (2013) Exome and Genome Sequencing. [Teaching Resource] (Unpublished)

Lyon, Gholson J. (2013) Exome and Genome Sequencing. [Teaching Resource] (Unpublished)

Lyon, Gholson J. (2013) FDA Crackdown on 23andMe Delays a Revolution in Medicine. [Audio] (Unpublished)

Lyon, Gholson J. (2013) "FDA Crackdown on 23ndMe Delays a Revolution in Medicine, says Medical Geneticist, Gholson Lyon". [Audio]

Lyon, Gholson J. (2013) Genetic and Biochemical Analysis of Childhood-­Onset Idiopathic Neuropsychiatric Disorders. In: Institute for Computational Biomedicine and Department of Physiology and Biophysics Seminar Series, Feb 13th 2013, Weill Cornell Medical College, New York, NY. (Unpublished)

Lyon, Gholson J. (2013) Genome Engineering Using CRISPR. Journal Club. (Unpublished)

Lyon, Gholson J. (2013) Human Subject Research Protocol. Gholson Lyon. (Unpublished)

Lyon, Gholson J. (2013) Increasing Accuracy for Exome and Whole Genome Sequencing. In: Bio-IT World and Cambridge Healthtech Institute's Inaugural- Clinical Exome Sequencing, December 4-5th 2013, Lisbon, Portugal. (Unpublished)

Lyon, Gholson J. (2013) Informed Consent for Human Subject Research Project. Gholson Lyon. (Unpublished)

Lyon, Gholson J. (2013) Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. In: COMPUTATIONAL BIOLOGY & BIOINFORMATICS SEMINAR SERIES, April 10th 2013, Cold Spring Harbor Laboratory. (Unpublished)

Lyon, Gholson J. (2013) Molecular basis for N-terminal acetylation by the heterodimeric NatA complex. Journal Club. (Unpublished)

Lyon, Gholson J. (2013) N=1 Human Study in Clinical Neurosciences: Genomics Guided Medicine and Deep Brain Stimulation. In: 5th Annual Consumer Genetics Conference, Sept 25th-27th 2013, Boston, MA. (Unpublished)

Lyon, Gholson J. (2013) Stopping 23andMe will only delay the revolution medicine needs. In: The Conversation.

Lyon, Gholson J. (2013) Toward more accurate variant calling for personal genomes. In: The Clinical Genome Conference, June 25th-26th 2013, San Francisco, CA. (Unpublished)

Lyon, Gholson J. (2013) Whole Genome Sequencing Analysis of a severe Idiopathic Intellectual Disability Syndrome or "limitations of theory may not be revealed when the facts are too few" - Knox 1958. In: 20th Annual Molecular Psychiatry Meeting, Feb 3rd-5th 2013, Park City, UT. (Unpublished)

Lyon, Gholson J. (2013) Whole genome sequencing, clinical interpretation, and deep brain stimulation in a severely mentally ill person. In: Wiring the Brain - Cold Spring Harbor Laboratory, July 18th-22nd 2013, Cold Spring Harbor, New York. (Unpublished)

Lyon, Gholson J. (2013) Whole genome sequencing, clinical interpretation, and deep brain stimulation in a severely mentally ill person. In: Gordon Research Conference, Human Genetics and Genomics, July 7th-12th 2013, Bryant University, Smithfield, RI . (Unpublished)

Lyon, Gholson J. (2013) "The ubiquitin reference technique and tandem fluorescence timers". Journal Club. (Unpublished)

Lyon, Gholson J., Bird, Lynne M., Rope, Alan (2013) X-linked Malformation and Infantile Lethality Syndrome (provisionally named Ogden Syndrome). In: Inborn errors of development. Oxford University Press, Oxford; New York. ISBN 9780195306910 (Submitted)

Lyon, Gholson J., O'Rawe, Jason, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Reese, Martin G. (2013) Supplemental file 1 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

Lyon, Gholson J., O'Rawe, Jason, Wu, Yiyang, Rope, Alan, Robison, Reid J., Wang, Kai, Swensen, Jeffrey J. (2013) Whole Genome Sequencing Analysis of an Idiopathic Intellectual Disability Syndrome. In: ACMG Annual Clinical Genetics Meeting, March 19th-23rd 2013, Phoenix, AZ. (Unpublished)

Lyon, Gholson J., Robison, Reid J., Wang, Kai (2013) The Implementation of Clinical Genomics: Ethical, Societal and Regulatory Considerations. In: ACMG Annual Clinical Genetics Meeting, March 19th-23rd 2013, Phoenix, AZ. (Unpublished)

Lyon, Gholson J., Segal, Jeremy P. (2013) Practical, ethical and regulatory considerations for the evolving medical and research genomics landscape. Applied & Translational Genomics, 2 (1). pp. 34-40. ISSN 2212-0661 (In Press)

Lyon, Gholson J., Doerfel, Max, O'Rawe, Jason, Wu, Yiyang, Fang, Han, Kota, Prashant, Jimenez Barron, Laura (2013) Human Genetics and Genomic Medicine. Cold Spring Harbor Laboratory.

Lyons, S. K., Patrick, P. S., Brindle, K. M. (2013) Imaging mouse cancer models in vivo using reporter transgenes. Cold Spring Harb Protoc, 2013 (8). pp. 685-99. ISSN 1559-6095 (Electronic)1559-6095 (Linking)

M

Ma, X., Kelley, J. L., Eilertson, K., Musharoff, S., Degenhardt, J. D., Martins, A. L., Vinar, T., Kosiol, C., Siepel, A., Gutenkunst, R. N., Bustamante, C. D. (2013) Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii). PLoS One, 8 (10). e77175. ISSN 1932-6203

Mahajan, Ujwal Mukund, Teller, Steffen, Sendler, Matthias, Schwaiger, Theresa, Glöckl, Gunner, Aurich, Konstanze, Partecke, Lars Ivo, Hadlich, Steffen, Weiss, Frank Ulrich, Kühn, Jens P., Tuveson, David, Lerch, Markus M., Mayerle, Julia (2013) In vivo imaging and targeted siRNA delivery using superparamagnetic nanoparticles in pancreatic ductal adenocarcinoma. Pancreatology, 13 (3, Sup). S19. ISSN 1424-3903

Maki, R. G., Jungbluth, A. A., Gnjatic, S., Schwartz, G. K., D'Adamo, D. R., Keohan, M. L., Wagner, M. J., Scheu, K., Chiu, R., Ritter, E., Kachel, J., Lowy, I., Old, L. J., Ritter, G. (2013) A Pilot Study of Anti-CTLA4 Antibody Ipilimumab in Patients with Synovial Sarcoma. Sarcoma, 2013. p. 168145. ISSN 1357-714X (Print)1357-714X (Linking)

Maki, R. G., Moraco, N., Antonescu, C. R., Hameed, M., Pinkhasik, A., Singer, S., Brennan, M. F. (2013) Toward better soft tissue sarcoma staging: building on american joint committee on cancer staging systems versions 6 and 7. Ann Surg Oncol, 20 (11). pp. 3377-83. ISSN 1534-4681 (Electronic)1068-9265 (Linking)

Makino, H., Li, B. (2013) Monitoring synaptic plasticity by imaging AMPA receptor content and dynamics on dendritic spines. Methods Mol Biol, 1018. pp. 269-275. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Mali, P., Aach, J., Lee, J. H., Levner, D., Nip, L., Church, G. M. (2013) Barcoding cells using cell-surface programmable DNA-binding domains. Nat Methods, 10 (5). pp. 403-6. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

Mandal, S., Stanco, A., Buys, E. S., Enikolopov, G., Rubenstein, J. L. (2013) Soluble Guanylate Cyclase Generation of cGMP Regulates Migration of MGE Neurons. Journal of Neuroscience, 33 (43). pp. 16897-914. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Maron, L. G., Guimaraes, C. T., Kirst, M., Albert, P. S., Birchler, J. A., Bradbury, P. J., Buckler, E. S., Coluccio, A. E., Danilova, T. V., Kudrna, D., Magalhaes, J. V., Pineros, M. A., Schatz, M. C., Wing, R. A., Kochian, L. V. (2013) Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America, 110 (13). pp. 5241-5246. ISSN 0027-8424

Matasci, N., McKay, S. (2013) Phylogenetic analysis with the iPlant discovery environment. Current protocols in bioinformatics (SUPPL.). 6.13.1-6.13.13. ISSN 19343396 (ISSN)

Matlashov, M., Enikolopov, G., Belousov, V. (2013) H2O2 producing/reporter system, based on D-amino acid oxidase - HyPer fusion. Febs Journal, 280 (S1). p. 234. ISSN 1742-464X

May, P., Liao, W., Wu, Y., Shuai, B., McCombie, W. R., Zhang, M. Q., Liu, Q. A. (2013) The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development. Nature Communications, 4. ISSN 20411723

McCandlish, D. M. (2013) On the findability of genotypes. Evolution, 67 (9). pp. 2592-603. ISSN 1558-5646 (Electronic)0014-3820 (Linking)

McCandlish, D. M., Rajon, E., Shah, P., Ding, Y., Plotkin, J. B. (2013) The role of epistasis in protein evolution. Nature, 497 (7451). E1-2; discussion E2. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

McKay, S. J., Skidmore, E. J., LaRose, C. J., Mercer, A. W., Noutsos, C. (2013) Cloud Computing with iPlant Atmosphere. Curr Protoc Bioinformatics, 43. 9 15 1-20. ISSN 1934-340X (Electronic)1934-3396 (Linking)

Melka, M. G., Gillis, J., Bernard, M., Abrahamowicz, M., Chakravarty, M. M., Leonard, G. T., Perron, M., Richer, L., Veillette, S., Banaschewski, T., Barker, G. J., BüChel, C., Conrod, P., Flor, H., Heinz, A., Garavan, H., Brühl, R., Mann, K., Artiges, E., Lourdusamy, A., Lathrop, M., Loth, E., Schwartz, Y., Frouin, V., Rietschel, M., Smolka, M. N., hle, A., Gallinat, J., Struve, M., Lattka, E., Waldenberger, M., Schumann, G., Pavlidis, P., Gaudet, D., Paus, T., Pausova, Z. (2013) FTO, obesity and the adolescent brain. Human Molecular Genetics, 22 (5). pp. 1050-1058. ISSN 09646906 (ISSN)

Menashe, I., Grange, P., Larsen, E. C., Banerjee-Basu, S., Mitra, P. P. (2013) Co-expression Profiling of Autism Genes in the Mouse Brain. PLoS Computational Biology, 9 (7). ISSN 1553734X

Mills, J. R., Malina, A., Lee, T., Di Paola, D., Larsson, O., Miething, C., Grosse, F., Tang, H. L., Zannis-Hadjopoulos, M., Lowe, S. W., Pelletier, J. (2013) RNAi screening uncovers Dhx9 as a modifier of ABT-737 resistance in an E mu-myc/Bcl-2 mouse model. Blood, 121 (17). pp. 3402-3412. ISSN 0006-4971

Ming, R., VanBuren, R., Liu, Y. L., Yang, M., Han, Y. P., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J. P., Bowers, J. E., Tang, H. B., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. N., Der, J. P., Zeng, F. C., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q. Y., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R. Z., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y. N., Xu, L. M., Zhang, J. S., Peery, R., Haus, M. J., Xiong, W. W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C. G., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., Schopf, J. W., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. H., Shen-Miller, J. (2013) Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology, 14 (5). ISSN 1465-6906

Mistry, M., Gillis, J., Pavlidis, P. (2013) Data and design files for 6 public datasets used in "Genome-wide expression profiling of schizophrenia using a large combined cohort" Mistry, M. and Gillis, J. and Pavlidis, P. (2013) Molecular Psychiatry, 18 (2). pp. 215-225. [Dataset]

Mistry, M., Gillis, J., Pavlidis, P. (2013) Genome-wide expression profiling of schizophrenia using a large combined cohort. Molecular Psychiatry, 18 (2). pp. 215-225. ISSN 13594184 (ISSN)

Mistry, M., Gillis, J., Pavlidis, P. (2013) Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls. BMC Neuroscience, 14 (1). p. 105. ISSN 1471-2202

Mitra, P. P., Rosa, M. G., Karten, H. J. (2013) Panoptic Neuroanatomy: Digital Microscopy of Whole Brains and Brain-Wide Circuit Mapping. Brain, Behavior and Evolution, 81 (4). pp. 203-205. ISSN 00068977 (ISSN)

Mo, Q., Wang, S., Seshan, V. E., Olshen, A. B., Schultz, N., Sander, C., Powers, R. S., Ladanyi, M., Shen, R. (2013) Pattern discovery and cancer gene identification in integrated cancer genomic data. Proceedings of the National Academy of Sciences of the United States of America, 110 (11). pp. 4245-4250. ISSN 00278424 (ISSN)

Mohammed, J., Flynt, A. S., Siepel, A., Lai, E. C. (2013) The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution. RNA, 19 (9). pp. 1295-308. ISSN 1355-8382

Monaco, M. K., Sen, T. Z., Dharmawardhana, P. D., Ren, L., Schaeffer, M., Naithani, S., Amarasinghe, V., Thomason, J., Harper, L., Gardiner, J., Cannon, E. K. S., Lawrence, C. J., Ware, D., Jaiswal, P. (2013) Maize Metabolic Network Construction and Transcriptome Analysis. Plant Genome, 6 (1). ISSN 1940-3372

Moreau, M., Westlake, T., Zampogna, G., Popescu, G., Tian, M., Noutsos, C., Popescu, S. (2013) The Arabidopsis oligopeptidases TOP1 and TOP2 are salicylic acid targets that modulate SA-mediated signaling and the immune response. Plant Journal, 76 (4). pp. 603-614. ISSN 09607412

Morgan, C. C., Mc Cartney, A. M., Donoghue, M. T. A., Loughran, N. B., Spillane, C., Teeling, E. C., O'Connell, M. J. (2013) Molecular adaptation of telomere associated genes in mammals. BMC Evolutionary Biology, 13. p. 251. ISSN 1471-2148

Muerdter, F., Guzzardo, P. M., Gillis, J., Luo, Y., Yu, Y., Chen, C., Fekete, R., Hannon, G.J. (2013) A Genome-wide RNAi Screen Draws a Genetic Framework for Transposon Control and Primary piRNA Biogenesis in Drosophila. Molecular Cell, 50 (5). pp. 736-748. ISSN 1097-4164

Mukhopadhyay, S., Sengupta, A. M. (2013) The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state. PLoS Computational Biology, 9 (7). e1003121. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Murthy, M., Turner, G. (2013) Dissection of the head cuticle and sheath of living flies for whole-cell patch-clamp recordings in the brain. Cold Spring Harbor Protocols, 8 (2). pp. 134-139. ISSN 19403402 (ISSN)

Murthy, M., Turner, G. (2013) Whole-cell in vivo patch-clamp recordings in the drosophila brain. Cold Spring Harbor Protocols, 8 (2). pp. 140-148. ISSN 19403402 (ISSN)

N

Naguib, A., Bencze, G., Faehnle, C. R., Schalch, T., Lazar, Z., Ruse, C. I., Joshua-Tor, L., Pappin, D. J., Trotman, L. C. (2013) Upstream activation of PTEN. Cancer Research, 73 (8 (Sup). p. 5156. ISSN 0008-5472

Naguib, A., Trotman, L. C. (2013) PTEN plasticity: how the taming of a lethal gene can go too far. Trends In Cell Biology, 23 (8). pp. 374-379. ISSN 0962-8924

Nakasone, E., Askautrud, H., Kees, T., Park, J., Fein, M., Egeblad, M. (2013) Imaging contributions of the microenvironment to chemoresistance. Journal of Nuclear Medicine, 54 (Supple). p. 31. ISSN 0161-5505

Nakasone, E. S., Askautrud, H. A., Egeblad, M. (2013) Live imaging of drug responses in the tumor microenvironment in mouse models of breast cancer. Journal of Visualized Experiments (73). ISSN 1940-087X (Electronic)1940-087X (Linking)

Neesse, A., Frese, K. K., Bapiro, T. E., Nakagawa, T., Sternlicht, M. D., Seeley, T. W., Pilarsky, C., Jodrell, D. I., Spong, S. M., Tuveson, D. A. (2013) CTGF antagonism with mAb FG-3019 enhances chemotherapy response without increasing drug delivery in murine ductal pancreas cancer. Proceedings of the National Academy of Sciences of the United States of America, 110 (30). pp. 12325-30. ISSN 0027-8424

Neesse, A., Frese, K. K., Chan, D. S., Bapiro, T. E., Howat, W. J., Richards, F. M., Ellenrieder, V., Jodrell, D. I., Tuveson, D. A. (2013) SPARC independent drug delivery and antitumour effects of nab-paclitaxel in genetically engineered mice. Gut, 63 (6). pp. 974-983. ISSN 00175749 (ISSN)

Neesse, A., Krug, S., Gress, T. M., Tuveson, D. A., Michl, P. (2013) Emerging concepts in pancreatic cancer medicine: targeting the tumor stroma. Onco Targets Ther, 7. pp. 33-43. ISSN 1178-6930 (Print)1178-6930

Nienborg, H., Hasenstaub, A., Nauhaus, I., Taniguchi, H., Huang, Z. J., Callaway, E. M. (2013) Contrast dependence and differential contributions from somatostatin- and parvalbumin-expressing neurons to spatial integration in mouse v1. Journal of Neuroscience, 33 (27). pp. 11145-54. ISSN 0270-6474

Nikonenko, I., Nikonenko, A., Mendez, P., Michurina, T. V., Enikolopov, G., Muller, D. (2013) Nitric oxide mediates local activity-dependent excitatory synapse development. Proceedings of the National Academy of Sciences of the United States of America, 110 (44). E4142-E4151. ISSN 0027-8424

Nowak, M., Kramer, B., Haupt, M., Papapanou, P. N., Kebschull, J., Hoffmann, P., Schmidt-Wolf, I. G., Jepsen, S., Brossart, P., Perner, S., Kebschull, M. (2013) Activation of Invariant NK T Cells in Periodontitis Lesions. Journal of Immunology, 190 (5). pp. 2282-2291. ISSN 0022-1767

Nussenzweig, M., O'Garra, A., Smale, S., Stewart, D., Stillman, B. (2013) Immunity and Tolerance. In: Cold Spring Harbor Symposia on Quantitative Biology LXXVIII: Immunity and Tolerance, Cold Spring Harbor.

O

O'Donnell, M., Langston, L., Stillman, B. (2013) Principles and concepts of DNA replication in bacteria, archaea, and eukarya. Cold Spring Harbor Perspectives in Biology, 5 (7). ISSN 19430264

O'Rawe, J., Jiang, T., Sun, G., Wu, Y., Wang, W., Hu, J., Bodily, P., Tian, L., Hakonarson, H., Johnson, W. E., Wei, Z., Wang, K., Lyon, G. J. (2013) Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med, 5 (3). p. 28. ISSN 1756-994X (Print)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental figure 1 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental figure 2 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental figure 3 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental figure 4 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental figure 5 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Image] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 10 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 11 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". UNSPECIFIED. (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 12 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 2 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 3 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 4 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 5 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 6 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 7 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 8 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplemental file 9 for "Integrating precision medicine in the study and clinical treatment of a severely mentally ill person.". [Dataset] (Unpublished)

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Supplementary video of subject M.A for Integrating precision medicine in the study and clinical treatment of a severely mentally ill person. PeerJ 1:e177. [Video]

O'Rawe, Jason, Fang, Han, Rynearson, Shawn, Robison, Reid J., Kiruluta, Edward S., Higgins, Gerald, Eilbeck, Karen, Reese, Martin G., Lyon, Gholson J. (2013) Integrating precision medicine in the study and clinical treatment of a severely mentally ill person. PeerJ, 1. e177.

O'Rawe, Jason, Jiang, Tao, Sun, Guangqing, Wu, Yiyang, Wang, Wei, Hu, Jingchu, Bodily, Paul, Tian, Lifeng, Hakonarson, Hakon, Johnson, W. Evan, Robison, Reid J., Wei, Zhi, Wang, Kai, Lyon, Gholson J. (2013) Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. In: The Biology of Genomes , May 2013, Cold Spring Harbor Laboratory. (Unpublished)

O'Rawe, Jason, Jiang, Tao, Sun, Guangqing, Wu, Yiyang, Wang, Wei, Hu, Jingchu, Bodily, Paul, Tian, Lifeng, Harkonarson, Hakon, Johnson, W. Evan, Robison, Reid J., Wei, Zhi, Wang, Kai, Lyon, Gholson J. (2013) Toward more accurate variant calling for “personal genomes”. In: ACMG Annual Clinical Genetics Meeting, March 19th-23rd 2013, Phoenix, AZ. (Unpublished)

O'Rawe, Jason, Wu, Yiyang, Mittelman, David, Fang, Han, Lyon, Gholson J. (2013) Uncovering genetic components of a previously un-described syndrome. In: Cold Spring Harbor Laboratory: Precision Medicine Meeting, November 2013, Cold Spring Harbor, New York. (Unpublished)

Oliver, S. L., Lenards, A. J., Barthelson, R. A., Merchant, N., McKay, S. J. (2013) Using the iplant collaborative discovery environment. Current protocols in bioinformatics (SUPPL.). 1.22. ISSN 19343396 (ISSN)

Osten, P., Margrie, T. W. (2013) Mapping brain circuitry with a light microscope. Nat Methods, 10 (6). pp. 515-23. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

P

Park, E., Kim, H., Kim, J. M., Primack, B., Vidal-Cardenas, S., Xu, Y., Price, B. D., Mills, A. A., D’Andrea, A. D. (2013) FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis. Molecular Cell, 50 (6). pp. 908-918. ISSN 1097-2765

Park, J. H., Glass, Z., Sayed, K., Michurina, T. V., Lazutkin, A., Mineyeva, O., Velmeshev, D., Ward, W. F., Richardson, A., Enikolopov, G. (2013) Calorie restriction alleviates the age-related decrease in neural progenitor cell division in the aging brain. European Journal of Neuroscience, 37 (12). pp. 1987-93. ISSN 0953-816X

Paul, S., Kuo, A., Schalch, T., Vogel, H., Joshua-Tor, L., McCombie, W. R., Gozani, O., Hammell, M., Mills, A. A. (2013) Chd5 Requires PHD-Mediated Histone 3 Binding for Tumor Suppression. Cell Reports, 3 (1). pp. 92-102. ISSN 2211-1247

Pautler, M., Tanaka, W., Hirano, H. Y., Jackson, D. (2013) Grass meristems I: Shoot apical meristem maintenance, axillary meristem determinacy and the floral transition. Plant and Cell Physiology, 54 (3). pp. 302-312. ISSN 00320781 (ISSN)

Pautler, Michael (2013) Meristem size and determinacy in Maize. PhD thesis, Cold Spring Harbor Laboratoy.

Pavlidis, P., Gillis, J. (2013) Progress and challenges in the computational prediction of gene function using networks: 2012-2013 update. F1000 Research, 2. p. 230. ISSN 20461402 (ISSN)

Penel, N., Demetri, G. D., Blay, J. Y., Cousin, S., Maki, R. G., Chawla, S. P., Judson, I., von Mehren, M., Schoffski, P., Verweij, J., Casali, P., Rodenhuis, S., Schutte, H. J., Cassar, A., Gomez, J., Nieto, A., Zintl, P., Pontes, M. J., Le Cesne, A. (2013) Growth modulation index as metric of clinical benefit assessment among advanced soft tissue sarcoma patients receiving trabectedin as a salvage therapy. Ann Oncol, 24 (2). pp. 537-42. ISSN 1569-8041 (Electronic)0923-7534 (Linking)

Perales, R., Erickson, B., Zhang, L., Kim, H., Valiquett, E., Bentley, D. (2013) Gene promoters dictate histone occupancy within genes. Embo Journal, 32 (19). pp. 2645-2656. ISSN 02614189 (ISSN)

Pfeffer, C. K., Xue, M., He, M., Huang, Z. J., Scanziani, M. (2013) Inhibition of inhibition in visual cortex: The logic of connections between molecularly distinct interneurons. Nature Neuroscience, 16 (8). pp. 1068-1076. ISSN 10976256

Pi, H. J., Hangya, B., Kvitsiani, D., Sanders, J. I., Huang, Z. J., Kepecs, A. (2013) Cortical interneurons that specialize in disinhibitory control. Nature, 503. pp. 521-24. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Pinskiy, V., Tolpygo, A. S., Jones, J., Weber, K., Franciotti, N., Mitra, P. P. (2013) A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal of Neuroscience Methods, 218 (2). pp. 206-21. ISSN 0165-0270

Plavskin, Y., Timmermans, M. C. (2013) Small RNA-Regulated Networks and the Evolution of Novel Structures in Plants. Cold Spring Harbor Symposia on Quantitative Biology, 77. ISSN 00917451 (ISSN)

Plavskin, Yevgeniy (2013) Regulation of the auxin response by an ancient small RNA pathway. PhD thesis, Cold Spring Harbor Laboratoy.

Plummer, P. N., Freeman, R., Taft, R. J., Vider, J., Sax, M., Umer, B. A., Gao, D. C., Johns, C., Mattick, J. S., Wilto, S. D., Ferro, V., McMillan, N. A. J., Swarbrick, A., Mittal, V., Mellick, A. S. (2013) MicroRNAs Regulate Tumor Angiogenesis Modulated by Endothelial Progenitor Cells. Cancer Research, 73 (1). pp. 341-352. ISSN 0008-5472

R

Raddatz, G., Guzzardo, P. M., Olova, N., Fantappié, M. R., Rampp, M., Schaefer, M., Reik, W., Hannon, G. J., Lyko, F. (2013) Dnmt2-dependent methylomes lack defined DNA methylation patterns. Proceedings of the National Academy of Sciences of the United States of America, 110 (21). pp. 8627-8631. ISSN 00278424

Rajaram, M., Li, J., Egeblad, M., Powers, R. S. (2013) System-wide analysis reveals a complex network of tumor-fibroblast interactions involved in tumorigenicity. PLoS Genetics, 9 (9). e1003789. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Rajaram, M., Zhang, J., Wang, T., Li, J., Kuscu, C., Qi, H., Kato, M., Grubor, V., Weil, R. J., Helland, A., Borrenson-Dale, A. L., Cho, K. R., Levine, D. A., Houghton, A. N., Wolchok, J. D., Myeroff, L., Markowitz, S. D., Lowe, S. W., Zhang, M., Krasnitz, A., Lucito, R., Mu, D., Powers, R. S. (2013) Two Distinct Categories of Focal Deletions in Cancer Genomes. PLoS ONE, 8 (6). e66264. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Ramsey, M. R., Wilson, C., Ory, B., Rothenberg, S. M., Faquin, W., Mills, A. A., Ellisen, L. W. (2013) FGFR2 signaling underlies p63 oncogenic function in squamous cell carcinoma. Journal of Clinical Investigation, 123 (8). pp. 3525-3538. ISSN 0021-9738

Ranade, S., Hangya, B., Kepecs, A. (2013) Multiple Modes of Phase Locking between Sniffing and Whisking during Active Exploration. Journal of Neuroscience, 33 (19). pp. 8250-6. ISSN 0270-6474

Regulski, M., Lu, Z., Kendall, J., Donoghue, M. T., Reinders, J., Llaca, V., Deschamps, S., Smith, A., Levy, D., McCombie, W. R., Tingey, S., Rafalski, A., Hicks, J., Ware, D., Martienssen, R. (2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research, 23 (10). pp. 1651-1662. ISSN 10889051 (ISSN)

Reilly, M. T., Faulkner, G. J., Dubnau, J., Ponomarev, I., Gage, F. H. (2013) The role of transposable elements in health and diseases of the central nervous system. Journal of Neuroscience, 33 (45). pp. 17577-86. ISSN 0270-6474

Revill, Kate, Wang, Tim, Lachenmayer, Anja, Kojima, Kensuke, Harrington, Andrew, Li, Jinyu, Hoshida, Yujin, Llovet, Josep M., Powers, R. Scott (2013) Genome-wide Methylation Analysis and Epigenetic Unmasking Identify Tumor Suppressor Genes in Hepatocellular Carcinoma. Gastroenterology, 145 (6). pp. 1424-1435. ISSN 0016-5085

Roberts, E. W., Deonarine, A., Jones, J. O., Denton, A. E., Feig, C., Lyons, S. K., Espeli, M., Kraman, M., McKenna, B., Wells, R. J. B., Zhao, Q., Caballero, O. L., Larder, R., Coll, A. P., O'Rahilly, S., Brindle, K. M., Teichmann, S. A., Tuveson, D. A., Fearon, D. T. (2013) Depletion of stromal cells expressing fibroblast activation protein-alpha from skeletal muscle and bone marrow results in cachexia and anemia. Journal of Experimental Medicine, 210 (6). pp. 1137-1151. ISSN 0022-1007

Roberts, R. J., Carneiro, M. O., Schatz, M. C. (2013) The advantages of SMRT sequencing. Genome Biology, 14 (7). p. 4. ISSN 1465-6906

Robinson, B. G., Khurana, S., Nguyen, A., Chuang, T., Young, M., Yu, J., Hooten, J., Atkinson, N. S. (2013) Interchangeable punishments during aversive conditioning in Drosophila. Current Science, 105 (9). pp. 1254-1261. ISSN 00113891 (ISSN)

Roca, X., Krainer, A. R. (2013) RNA Splicing. In: Brenner's Encyclopedia of Genetics. Elsevier Science. ISBN 9780080961569

Roca, X., Krainer, A. R., Eperon, I. C. (2013) Pick one, but be quick: 5′ splice sites and the problems of too many choices. Genes and Development, 27 (2). pp. 129-144. ISSN 08909369 (ISSN)

Roe, J. S., Vakoc, C. R. (2013) Oncogene interference through targeting of chromatin regulators. Cell Cycle, 12 (10). pp. 1475-1476. ISSN 1551-4005 (Electronic)1551-4005 (Linking)

Rossmann, M. P., Stillman, B. (2013) Immunoblotting histones from yeast whole-cell protein extracts. Cold Spring Harbor Protocols, 2013 (7). ISSN 1559-6095

Rozhkov, N. V., Hammell, M., Hannon, G. J. (2013) Multiple roles for Piwi in silencing Drosophila transposons. Genes and Development, 27 (4). pp. 400-412. ISSN 08909369 (ISSN)

Rozhkov, N. V., Schostak, N. G., Zelentsova, E. S., Yushenova, I. A., Zatsepina, O. G., Evgen'ev, M. B. (2013) Evolution and Dynamics of Small RNA Response to a Retroelement Invasion in Drosophila. Molecular Biology and Evolution, 30 (2). pp. 397-408. ISSN 0737-4038

Ruse, C. I., Peacock, S., Ghiban, C., Rivera, K., Pappin, D. J., Leopold, P. (2013) A tool to evaluate correspondence between extraction ion chromatographic peaks and peptide-spectrum matches in shotgun proteomics experiments. Proteomics, 13 (16). pp. 2386-2397. ISSN 1615-9861 (Electronic)1615-9853 (Linking)

S

Sabin, L. R., Cherry, S. (2013) Small creatures use small RNAs to direct antiviral defenses. European Journal of Immunology, 43 (1). pp. 27-33. ISSN 1521-4141 (Electronic)0014-2980 (Linking)

Sabin, L. R., Delas, M. J., Hannon, G. J. (2013) Dogma derailed: the many influences of RNA on the genome. Molecular Cell, 49 (5). pp. 783-94. ISSN 1097-2765

Sabin, L. R., Zheng, Q., Thekkat, P., Yang, J., Hannon, G. J., Gregory, B. D., Tudor, M., Cherry, S. (2013) Dicer-2 Processes Diverse Viral RNA Species. PLoS ONE, 8 (2). ISSN 19326203 (ISSN)

Saborowski, A., Saborowski, M., Davare, M. A., Druker, B. J., Klimstra, D. S., Lowe, S. W. (2013) Mouse model of intrahepatic cholangiocarcinoma validates FIG-ROS as a potent fusion oncogene and therapeutic target. Proceedings of the National Academy of Sciences of the United States of America, 110 (48). pp. 19513-19518. ISSN 00278424 (ISSN)

Sagiv, A., Biran, A., Yon, M., Simon, J., Lowe, S. W., Krizhanovsky, V. (2013) Granule exocytosis mediates immune surveillance of senescent cells. Oncogene, 32 (15). pp. 1971-7. ISSN 1476-5594 (Electronic)0950-9232 (Linking)

Sahashi, K., Ling, K. K., Hua, Y., Wilkinson, J. E., Nomakuchi, T., Rigo, F., Hung, G., Xu, D., Jiang, Y. P., Lin, R. Z., Ko, C. P., Bennett, C. F., Krainer, A. R. (2013) Pathological impact of SMN2 mis-splicing in adult SMA mice. EMBO Molecular Medicine, 5 (10). pp. 1586-1601. ISSN 17574676 (ISSN)

Salussolia, C. L., Gan, Q., Kazi, R., Singh, P., Allopenna, J., Furukawa, H., Wollmuth, L. P. (2013) A eukaryotic specific transmembrane segment is required for tetramerization in AMPA receptors. Journal of Neuroscience, 33 (23). pp. 9840-9845. ISSN 02706474

Saw, J. H. W., Schatz, M., Brown, M. V., Kunkel, D. D., Foster, J. S., Shick, H., Christensen, S., Hou, S., Wan, X., Donachie, S. P. (2013) Cultivation and Complete Genome Sequencing of Gloeobacter kilaueensis sp. nov., from a Lava Cave in Kīlauea Caldera, Hawai'i. PLoS ONE, 8 (10). ISSN 19326203 (ISSN)

Scanlon, M. J., Timmermans, M. (2013) Growth and development: from genes to networks and a mechanistic understanding of plant development. Current Opinion in Plant Biology, 16 (1). pp. 1-4. ISSN 1369-5266

Schatz, M. C., Langmead, B. (2013) THE DNA DATA DELUGE FAST, EFFICIENT GENOME-SEQUENCING MACHINES ARE SPEWING OUT MORE DATA THAN GENETICISTS CAN ANALYZE. IEEE Spectrum, 50 (7). pp. 28-33. ISSN 0018-9235

Schatz, M. C., Phillippy, A. M., Sommer, D. D., Delcher, A. L., Puiu, D., Narzisi, G., Salzberg, S. L., Pop, M. (2013) Hawkeye and AMOS: Visualizing and assessing the quality of genome assemblies. Briefings in Bioinformatics, 14 (2). pp. 213-224. ISSN 14675463

Schatz, M. C., Taylor, J., Schelhorn, S. E. (2013) The DNA60IFX contest. Genome Biol, 14 (6). p. 124. ISSN 1465-6914 (Electronic)1465-6906 (Linking)

Schlesinger, F., Smith, A. D., Gingeras, T. R., Hannon, G. J., Hodges, E. (2013) De novo DNA demethylation and non-coding transcription define active intergenic regulatory elements. Genome Research, 23 (10). pp. 1601-1614. ISSN 10889051 (ISSN)

Schuck, S., Ruse, C., Stenlund, A. (2013) CK2 phosphorylation inactivates DNA binding by the papillomavirus E1 and E2 proteins. Journal of Virology, 87 (13). pp. 7668-7679. ISSN 0022-538X

Schulz, D., Smith, D., Yu, M., Lee, H., Henn, F. A. (2013) Selective breeding for helplessness in rats alters the metabolic profile of the hippocampus and frontal cortex: A 1H-MRS study at 9.4 T. International Journal of Neuropsychopharmacology, 16 (1). pp. 199-212. ISSN 14611457

Schwartz, G. K., Tap, W. D., Qin, L. X., Livingston, M. B., Undevia, S. D., Chmielowski, B., Agulnik, M., Schuetze, S. M., Reed, D. R., Okuno, S. H., Ludwig, J. A., Keedy, V., Rietschel, P., Kraft, A. S., Adkins, D., Van Tine, B. A., Brockstein, B., Yim, V., Bitas, C., Abdullah, A., Antonescu, C. R., Condy, M., Dickson, M. A., Vasudeva, S. D., Ho, A. L., Doyle, L. A., Chen, H. X., Maki, R. G. (2013) Cixutumumab and temsirolimus for patients with bone and soft-tissue sarcoma: a multicentre, open-label, phase 2 trial. Lancet Oncol, 14 (4). pp. 371-82. ISSN 1474-5488 (Electronic)1470-2045 (Linking)

Seese, R. R., Chen, L. Y., Cox, C. D., Schulz, D., Babayan, A. H., Bunney, W. E., Henn, F. A., Gall, C. M., Lynch, G. (2013) Synaptic abnormalities in the infralimbic cortex of a model of congenital depression. Journal of Neuroscience, 33 (33). pp. 13441-8. ISSN 0270-6474

Sehgal, P., Chaturvedi, P., Kumaran, R. I., Kumar, S., Parnaik, V. K. (2013) Lamin A/C Haploinsufficiency Modulates the Differentiation Potential of Mouse Embryonic Stem Cells. PLoS ONE, 8 (2). ISSN 1932-6203 (Electronic)

Sever, R., Glass, C. K. (2013) Signaling by nuclear receptors. Cold Spring Harbor Perspectives in Biology, 5 (3). ISSN 1943-0264 (Electronic)

Shaik-Dasthagirisaheb, Y., Huang, N., Baer, M. T., Gibson, F. C. (2013) Role of MyD88-dependent and MyD88-independent signaling in Porphyromonas gingivalis-elicited macrophage foam cell formation. Molecular Oral Microbiology, 28 (1). pp. 28-39. ISSN 20411006

Sheltzer, J. M. (2013) A transcriptional and metabolic signature of primary aneuploidy is present in chromosomally unstable cancer cells and informs clinical prognosis. Cancer Res, 73 (21). pp. 6401-12. ISSN 1538-7445 (Electronic)0008-5472 (Linking)

Sheppard, J. P., Raposo, D., Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6). ISSN 1534-7362 (Electronic)1534-7362 (Linking)

Sheppard, J. P., Raposo, D., Churchland, A. K. (2013) Tutorial and data for "Sheppard, J. P. and Raposo, D. and Churchland, A. K. (2013) Dynamic weighting of multisensory stimuli shapes decision-making in rats and humans. Journal of Vision, 13 (6).". [Dataset]

Sheppard, J. P., Ryan, M.B., Churchland, A. K. (2013) Optogenetic stimulation of visual inputs to posterior parietal cortex biases choice behavior of rats on a multisensory decision task. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Shi, J., Wang, E., Zuber, J., Rappaport, A., Taylor, M., Johns, C., Lowe, S. W., Vakoc, C. R. (2013) The Polycomb complex PRC2 supports aberrant self-renewal in a mouse model of MLL-AF9;Nras(G12D) acute myeloid leukemia. Oncogene, 32 (7). pp. 930-938. ISSN 1476-5594 (Electronic)0950-9232 (Linking)

Shi, L., Zhang, X., Golhar, R., Otieno, F. G., He, M., Hou, C., Kim, C., Keating, B., Lyon, G. J., Wang, K., Hakonarson, H. (2013) Whole-genome sequencing in an autism multiplex family. Molecular Autism, 4 (1). p. 8. ISSN 2040-2392 (Electronic)

Shi, J., Whyte, W. A., Zepeda-Mendoza, C. J., Milazzo, J. P., Shen, C., Roe, J. S., Minder, J. L., Mercan, F., Wang, E., Eckersley-Maslin, M. A., Campbell, A. E., Kawaoka, S., Shareef, S., Zhu, Z., Kendall, J., Muhar, M., Haslinger, C., Yu, M., Roeder, R. G., Wigler, M. A., Blobel, G. A., Zuber, J., Spector, D. L., Young, R. A., Vakoc, C. R. (2013) Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation. Genes and Development, 27 (24). pp. 264-273. ISSN 08909369 (ISSN)

Shimokawa, T., Mohammed Ferdous-Ur, Rahman, Tostar, U., Sonkoly, E., Ståhle, M., Pivarcsi, A., Palaniswamy, R., Zaphiropoulos, P. G. (2013) RNA editing of the GLI1 transcription factor modulates the output of Hedgehog signaling. Rna Biology, 10 (2). pp. 321-333. ISSN 15476286 (ISSN)

Singh, R., Low, E. T. L., Ooi, L. C. L., Ong-Abdullah, M., Ting, N. C., Nagappan, J., Nookiah, R., Amiruddin, M. D., Rosli, R., Manaf, M. A. A., Chan, K. L., Halim, M. A., Azizi, N., Lakey, N., Smith, S. W., Budiman, M. A., Hogan, M., Bacher, B., Van Brunt, A., Wang, C., Ordway, J. M., Sambanthamurthi, R., Martienssen, R. A. (2013) The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature, 500 (7462). pp. 340-344. ISSN 00280836

Singh, R., Ong-Abdullah, M., Low, E. T. L., Manaf, M. A. A., Rosli, R., Nookiah, R., Ooi, L. C. L., Ooi, S. E., Chan, K. L., Halim, M. A., Azizi, N., Nagappan, J., Bacher, B., Lakey, N., Smith, S. W., He, D., Hogan, M., Budiman, M. A., Lee, E. K., Desalle, R., Kudrna, D., Goicoechea, J. L., Wing, R. A., Wilson, R. K., Fulton, R. S., Ordway, J. M., Martienssen, R. A., Sambanthamurthi, R. (2013) Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature, 500 (7462). pp. 335-339. ISSN 00280836

Siolas, D., Hannon, G. J. (2013) Patient-derived tumor xenografts: Transforming clinical samples into mouse models. Cancer Research, 73 (17). pp. 5315-5319. ISSN 00085472 (ISSN)

Steijger, T., Abril, J. F., Engström, P. G., Kokocinski, F., Akerman, M., Alioto, T., Ambrosini, G., Antonarakis, S. E., Behr, J., Bertone, P., Bohnert, R., Bucher, P., Cloonan, N., Derrien, T., Djebali, S., Du, J., Dudoit, S., Gerstein, M., Gingeras, T. R., Gonzalez, D., Grimmond, S. M., Guigó, R., Habegger, L., Harrow, J., Hubbard, T. J., Iseli, C., Jean, G., Kahles, A., Lagarde, J., Leng, J., Lefebvre, G., Lewis, S., Mortazavi, A., Niermann, P., Rätsch, G., Reymond, A., Ribeca, P., Richard, H., Rougemont, J., Rozowsky, J., Sammeth, M., Sboner, A., Schulz, M. H., Searle, S. M. J., Solorzano, N. D., Solovyev, V., Stanke, M., Stevenson, B. J., Stockinger, H., Valsesia, A., Weese, D., White, S., Wold, B. J., Wu, J., Wu, T. D., Zeller, G., Zerbino, D., Zhang, M. Q. (2013) Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10 (12). pp. 1177-1184. ISSN 15487091 (ISSN)

Stephenson-Jones, M., Kardamakis, A. A., Robertson, B., Grillner, S. (2013) Independent circuits in the basal ganglia for the evaluation and selection of actions. Proceedings of the National Academy of Sciences of the United States of America, 110 (38). E3670-E3679. ISSN 0027-8424

Stillman, B. (2013) Deoxynucleoside triphosphate (dNTP) synthesis and destruction regulate the replication of both cell and virus genomes. Proceedings of the National Academy of Sciences of the United States of America, 110 (35). pp. 14120-14121. ISSN 0027-8424

Sun, J., Evrin, C., Samel, S. A., Fernandez-Cid, A., Riera, A., Kawakami, H., Stillman, B., Speck, C., Li, H. (2013) Cryo-EM structure of a helicase loading intermediate containing ORC-Cdc6-Cdt1-MCM2-7 bound to DNA. Nature Structural and Molecular Biology, 20 (8). pp. 944-951. ISSN 15459993

T

Tanaka, W., Pautler, M., Jackson, D., Hirano, H. Y. (2013) Grass meristems II: Inflorescence architecture, flower development and meristem fate. Plant and Cell Physiology, 54 (3). pp. 313-324. ISSN 00320781 (ISSN)

Taniguchi, H., Lu, J., Huang, Z. J. (2013) The spatial and temporal origin of chandelier cells in mouse neocortex. Science, 339 (6115). pp. 70-4. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Tasdemir, N., Lowe, S. W. (2013) Senescent cells spread the word: non-cell autonomous propagation of cellular senescence. Embo Journal, 84 (1). pp. 114-127. ISSN 0261-4189

Tonks, N. K. (2013) Protein Tyrosine Phosphatases: Critical Regulators of Signaling in Cancer. Faseb Journal, 27 (1). ISSN 0892-6638

Tonks, N. K. (2013) Protein tyrosine phosphatases - from housekeeping enzymes to master regulators of signal transduction. Febs Journal, 280 (2). pp. 346-378. ISSN 1742464X

V

Vagin, V. V., Yu, Y., Jankowska, A., Luo, Y., Wasik, K. A., Malone, C. D., Harrison, E., Rosebrock, A., Wakimoto, B. T., Fagegaltier, D., Muerdter, F., Hannon, G. J. (2013) Minotaur is critical for primary piRNA biogenesis. RNA, 19 (8). pp. 1064-1077. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Vernersson Lindahl, E., Garcia, E. L., Mills, A. A. (2013) An allelic series of Trp63 mutations defines TAp63 as a modifier of EEC syndrome. American Journal of Medical Genetics Part A, 161 (8). pp. 1961-1971. ISSN 1552-4825

Vestin, A., Mills, A. A. (2013) The tumor suppressor Chd5 is induced during neuronal differentiation, in the developing mouse brain. Gene Expression Patterns, 13 (8). pp. 482-489. ISSN 1872-7298 (Electronic)1567-133X (Linking)

Vi, S. L., Trost, G., Lange, P., Czesnick, H., Rao, N., Lieber, D., Laux, T., Gray, W. M., Manley, J. L., Groth, D., Kappel, C., Lenhard, M. (2013) Target specificity among canonical nuclear poly(A) polymerases in plants modulates organ growth and pathogen response. Proceedings of the National Academy of Sciences of the United States of America, 110 (34). pp. 13994-13999. ISSN 00278424

Vidal, E. A., Moyano, T. C., Krouk, G., Katari, M. S., Tanurdzic, M., McCombie, W. R., Coruzzi, G. M., Gutierrez, R. A. (2013) Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 14. p. 701. ISSN 1471-2164

Vu, T. M., Nakamura, M., Calarco, J. P., Susaki, D., Lim, P. Q., Kinoshita, T., Higashiyama, T., Martienssen, R. A., Berger, F. (2013) RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development, 140 (14). pp. 2953-2960. ISSN 0950-1991

W

Wall, M., Poortinga, G., Stanley, K. L., Lindemann, R. K., Bots, M., Chan, C. J., Bywater, M. J., Kinross, K. M., Astle, M. V., Waldeck, K., Hannan, K. M., Shortt, J., Smyth, M. J., Lowe, S. W., Hannan, R. D., Pearson, R. B., Johnstone, R. W., McArthur, G. A. (2013) The mTORC1 inhibitor everolimus prevents and treats Eμ-Myc lymphoma by restoring oncogene-induced senescence. Cancer Discovery, 3 (1). pp. 82-95. ISSN 21598274

Wang, D., Pan, E., Fang, G., Kumari, S., He, F., Ware, D., Maslov, S., Gerstein, M. (2013) Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between arabidopsis and poplar. 2013 4th ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013 . ACM, pp. 689-690. ISBN 9781450324342 (ISBN)

Wang, E., Kawaoka, S., Yu, M., Shi, J., Ni, T., Yang, W., Zhu, J., Roeder, R. G., Vakoc, C. R. (2013) Histone H2B ubiquitin ligase RNF20 is required for MLL-rearranged leukemia. Proceedings of the National Academy of Sciences of the United States of America, 110 (10). pp. 3901-6. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Wang, H., Lacoche, S., Huang, L., Xue, B., Muthuswamy, S. K. (2013) Rotational motion during three-dimensional morphogenesis of mammary epithelial acini relates to laminin matrix assembly. Proceedings of the National Academy of Sciences of the United States of America, 110 (1). pp. 163-168. ISSN 00278424

Wang, K., Kim, C., Bradfield, J., Guo, Y. F., Toskala, E., Otieno, F. G., Hou, C. P., Thomas, K., Cardinale, C., Lyon, G. J., Golhar, R., Hakonarson, H. (2013) Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement. Genome Medicine, 5. ISSN 1756-994X

Wang, L., Liang, B., Zhong, Y. (2013) Reduced EGFR level potentially mediates the A beta 42-induced neuronal loss in transgenic fruit fly and mouse. Protein & Cell, 4 (9). pp. 647-649. ISSN 1674-800X

Wang, L., Stein, L. D. (2013) Modeling the evolution dynamics of exon-intron structure with a general random fragmentation process. BMC Evolutionary Biology, 13. p. 57. ISSN 1471-2148 (Electronic)1471-2148 (Linking)

Wargas, Robert, Pollock, Ludmila (2013) Second Century: Cold Spring Harbor Laboratory and the Biotechnology Revolution. (Unpublished)

Watson, J. (2013) Oxidants, antioxidants and the current incurability of metastatic cancers. Open Biology, 3 (1). pp. 2046-2441.

Wei, Y., Tsigankov, D., Koulakov, A. (2013) The molecular basis for the development of neural maps. Annals of the New York Academy of Sciences, 1305. pp. 44-60. ISSN 0077-8923

Weirauch, M. T., Cote, A., Norel, R., Annala, M., Zhao, Y., Riley, T. R., Saez-Rodriguez, J., Cokelaer, T., Vedenko, A., Talukder, S., Bussemaker, H. J., Quaid, M. D., Bulyk, M. L., Stolovitzky, G., Hughes, T. R., Agius, P., Arvey, A., Bucher, P., Callan Jr, C. G., Chang, C. W., Chen, C. Y., Chen, Y. S., Chu, Y. W., Grau, J., Grosse, I., Jagannathan, V., Keilwagen, J., Kiebasa, S. M., Kinney, J. B., Klein, H., Kursa, M. B., Lähdesmäki, H., Laurila, K., Lei, C., Leslie, C., Linhart, C., Murugan, A., Myšičková, A., Noble, W. S., Nykter, M., Orenstein, Y., Posch, S., Ruan, J., Rudnicki, W. R., Schmid, C. D., Shamir, R., Sung, W. K., Vingron, M., Zhang, Z. (2013) Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology, 31 (2). pp. 126-134. ISSN 10870156 (ISSN)

Westfall, M., Spector, M. S., Gulrajani, M., Marimpietri, C., Kritharis, A., Fields, S. Z., Allen, S. L., Hawtin, R. (2013) Functional characterization of KIT and Fc epsilon R1 receptor mutations in Mast Cell Leukemia using Single Cell Network Profiling (SCNP). Cancer Research, 73 (8 (Sup). p. 3524. ISSN 0008-5472

Wiggs, J. L., Howell, G. R., Linkroum, K., Abdrabou, W., Hodges, E., Braine, C. E., Pasquale, L. R., Hannon, G. J., Haines, J. L., John, S. W. M. (2013) Variations in COL15A1 and COL18A1 influence age of onset of primary open angle glaucoma. Clinical Genetics, 84 (2). p. 167. ISSN 00099163

Wigler, M. H. (2013) Cold Spring Harbor Laboratory Annual Reports Excerpts: Wigler Laboratory 1979-2011. Project Report. Cold Spring Harbor Laboratory.

Michael Wigler (2013) Determining a probabilistic diagnosis of autism by analysis of genomic copy number variations. United States Patent 8554488. .

Wolthuizen, M., Nisselle, A., Halliday, J., Metcalfe, S. A., Aitken, M., Allen, K. J., Delatycki, M. B. (2013) Why do people choose not to have screening for hemochromatosis? Genetic Testing and Molecular Biomarkers, 17 (1). pp. 21-24. ISSN 19450265

Wrzeszczynski, K. O., Fan, G. F., Fu, C. X., Pappin, D. J., Lucito, R., Tonks, N. K. (2013) Proteomic identification of carboplatin resistance in ovarian cancer cells. Cancer Research, 73 (8 Supp). p. 2502. ISSN 0008-5472

Wrzeszczynski, K. O., Varadan, V., Kamalakaran, S., Levine, D. A., Dimitrova, N., Lucito, R. (2013) Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer. Methods Mol Biol, 1049. pp. 35-51. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Wu, J., Anczukow, O., Krainer, A. R., Zhang, M. Q., Zhang, C. (2013) OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. Nucleic Acids Research, 41 (10). pp. 5149-5163. ISSN 03051048 (ISSN)

Wu, Q., Luo, A., Zadrozny, T., Sylvester, A., Jackson, D. (2013) Fluorescent protein marker lines in maize: generation and applications. The International Journal of Developmental Biology, 57 (6-8). pp. 535-43. ISSN 0214-6282

Wu, Yiyang (2013) The evolution of MIP technology. Journal Club. (Unpublished)

X

Xu, X., Zhang, Y., Williams, J., Antoniou, E., McCombie, W. R., Wu, S., Zhu, W., Davidson, N. O., Denoya, P., Li, E. (2013) Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets. BMC Bioinformatics, 14 Sup. S1. ISSN 1471-2105 (Electronic)1471-2105 (Linking)

Xue, B., Krishnamurthy, K., Allred, D. C., Muthuswamy, S. K. (2013) Loss of Par3 promotes breast cancer metastasis by compromising cell-cell cohesion. Nature Cell Biology, 15 (2). pp. 189-200. ISSN 1465-7392

Y

Yamada, Y., Laufer, I., Cox, B. W., Lovelock, D. M., Maki, R. G., Zatcky, J. M., Boland, P. J., Bilsky, M. H. (2013) Preliminary results of high-dose single-fraction radiotherapy for the management of chordomas of the spine and sacrum. Neurosurgery, 73 (4). 673-80; discussion 680. ISSN 1524-4040 (Electronic)0148-396X (Linking)

Yan, Yiheng, Candreva, Jason, Shi, Hai, Ernst, Evan, Martienssen, Robert, Schwender, Jorg, Shanklin, John (2013) Survey of the total fatty acid and triacylglycerol composition and content of 30 duckweed species and cloning of a Delta 6-desaturase responsible for the production of gamma-linolenic and stearidonic acids in Lemna gibba. BMC Plant Biology, 13. ISSN 1471-2229

Youmans, S. J., Fein, M. R., Wirkowski, E., Maesaka, J. K. (2013) Demonstration of natriuretic activity in urine of neurosurgical patients with renal salt wasting. F1000 Research, 2. p. 126. ISSN 20461402 (ISSN)

Z

Zariwala, H. A., Kepecs, A., Uchida, N., Hirokawa, J., Mainen, Z. F. (2013) The Limits of Deliberation in a Perceptual Decision Task. Neuron, 78 (2). pp. 339-51. ISSN 08966273 (ISSN)

Zeng, L., Choi, S. C., Danko, C. G., Siepel, A., Stanhope, M. J., Burne, R. A. (2013) Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans. PLoS One, 8 (3). e60465. ISSN 1932-6203

Zhai, J. X., Zhao, Y. Y., Simon, S. A., Huang, S., Petsch, K., Arikit, S., Pillay, M., Ji, L. J., Xie, M., Cao, X. F., Yu, B., Timmermans, M., Yang, B., Chen, X. M., Meyers, B. C. (2013) Plant MicroRNAs Display Differential 3 ' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species. Plant Cell, 25 (7). pp. 2417-2428. ISSN 1040-4651

Zhang, L., Prak, L., Rayon-Estrada, V., Thiru, P., Flygare, J., Lim, B., Lodish, H. F. (2013) ZFP36L2 is required for self-renewal of early burst-forming unit erythroid progenitors. Nature, 499 (7456). pp. 92-6. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Zhang, Y., Shin, S. J., Liu, D., Ivanova, E., Foerster, F., Ying, H., Zheng, H., Xiao, Y., Chen, Z., Protopopov, A., Depinho, R. A., Paik, J. H. (2013) ZNF365 Promotes Stability of Fragile Sites and Telomeres. Cancer Discovery, 3 (7). pp. 798-811. ISSN 21598274

Zhao, J., Lu, Y., Zhao, X., Yao, X., Shuai, Y., Huang, C., Wang, L., Jeong, S. H., Zhong, Y. (2013) Dissociation of rugose-dependent short-term memory component from memory consolidation in Drosophila. Genes, Brain and Behavior, 12 (6). pp. 626-632. ISSN 16011848

Zhong, Y., Nellimoottil, T., Peace, J. M., Knott, S. R., Villwock, S. K., Yee, J. M., Jancuska, J. M., Rege, S., Tecklenburg, M., Sclafani, R. A., Tavare, S., Aparicio, O. M. (2013) The level of origin firing inversely affects the rate of replication fork progression. J Cell Biol, 201 (3). pp. 373-83. ISSN 0021-9525

Znamenskiy, P., Zador, A. M. (2013) Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination. Nature, 497. pp. 482-485. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

This list was generated on Sun Dec 17 10:54:24 2017 EST.
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