Items where Year is 2006

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Authors | Item Type | No Grouping
Jump to: | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z
Number of items: 271.

Ramiro, A. R., Jankovic, M., Callen, E., Difilippantonio, S., Chen, H. T., McBride, K. M., Eisenreich, T. R., Chen, J., Dickins, R. A., Lowe, S. W., Nussenzweig, A., Nussenzweig, M. C. (March 2006) Role of genomic instability and p53 in AID-induced c-myc-Igh translocations. Nature, 440 (7080). pp. 105-109. ISSN 00280836

A

Akerman, C. J., Cline, H. T. (May 2006) Depolarizing GABAergic conductances regulate the balance of excitation to inhibition in the developing retinotectal circuit in vivo. J Neurosci, 26 (19). pp. 5117-30. ISSN 1529-2401 (Electronic)

Alfonso, Yoselin Benitez, Cantrill, Laurence, Jackson, David (2006) Plasmodesmata: Cell-Cell Channels in Plants. In: Cell-Cell Channels. Springer New York, pp. 101-112. ISBN 978-0-387-36058-4

Anderson, S. E., Keohan, M. L., D'Adamo, D. R., Maki, R. G. (2006) A retrospective analysis of vinorelbine chemotherapy for patients with previously treated soft-tissue sarcomas. Sarcoma, 2006. p. 15947. ISSN 1357-714X (Print)1357-714X (Linking)

Andl, T., Murchison, E. P., Liu, Fei, Zhang, Yi, Yunta-Gonzalez, M., Tobias, J. W., Andl, C. D., Seykora, J. T., Hannon, G. J., Millar, S. E. (May 2006) The miRNA-Processing Enzyme Dicer Is Essential for the Morphogenesis and Maintenance of Hair Follicles. Current Biology, 16 (10). pp. 1041-1049. ISSN 09609822

Andrews, P. , Saar, S., Wang, H., Valente, D., Serkhane, J., Tchernichovsky, O., Golani, I., Mitra, P. P. (October 2006) Multimedia signal processing for behavioral quantification in neuroscience. In: International Multimedia Conference: Proceedings of the 14th annual ACM international conference on Multimedia , Santa Barbara, CA.

Aranda, V., Haire, T., Nolan, M. E., Calarco, J. P., Rosenberg, A. Z., Fawcett, J. P., Pawson, T., Muthuswamy, S. K. (November 2006) Par6-aPKC uncouples ErbB2 induced disruption of polarized epithelial organization from proliferation control. Nat Cell Biol, 8 (11). pp. 1235-45. ISSN 1465-7392 (Print)

Aravin, A. A., Gaidatzis, D., Pfeffer, S., Lagos-Quintana, M., Landgraf, P., Iovino, N., Morris, P., Brownstein, M. J., Kuramochi-Miyagawa, S., Nakano, T., Chien, M. C., Russo, J. J., Ju, J. Y., Sheridan, R., Sander, C., Zavolan, M. , Tuschl, T. (July 2006) A novel class of small RNAs bind to MILI protein in mouse testes. Nature, 442 (7099). pp. 203-7. ISSN 1476-4687 (Electronic)

Asari, H., Pearlmutter, B. A., Zador, A. M. (July 2006) Sparse representations for the cocktail party problem. Journal of Neuroscience, 26 (28). pp. 7477-7490. ISSN 02706474

Atwal, G. S. (May 2006) Clustering problems in biological networks. Journal of Classification, 23. pp. 349-352. ISSN 0176-4268 (print) 1432-1343 (Online)

B

Bejerano, G., Lowe, C. B., Ahituv, N., King, B., Siepel, A., Salama, S. R., Rubin, E. M., Kent, W. J., Haussler, D. (May 2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature, 441 (7089). pp. 87-90. ISSN 0028-0836

Bell, D. W., Sordella, R., Kwak, E. L., Godin-Heymann, N., Sharma, S. V., Sgroi, D. C., Sequist, L. V., Lynch, T. J., Settleman, J., Haber, D. A. (2006) Molecular targeted therapy of lung cancer. Tumor Biology, 27 (Suppl). ISSN 1010-4283

Berger, K. H., Kong, E. C., Dubnau, J., Tully, T., Moore, M. S., Heberlein, U. (June 2006) Ethanol-responsive behaviors & learning and memory-shared mechanisms? Alcoholism-Clinical and Experimental Research, 30 (6). 261A-261A. ISSN 0145-6008

Berman, E., Nicolaides, M., Maki, R. G., Fleisher, M., Chanel, S., Scheu, K., Wilson, B. A., Heller, G., Sauter, N. P. (May 2006) Altered bone and mineral metabolism in patients receiving imatinib mesylate. N Engl J Med, 354 (19). pp. 2006-13. ISSN 1533-4406 (Electronic)0028-4793 (Linking)

Bestman, J. E., Ewald, R. C., Chiu, S. L., Cline, H. T. (2006) In vivo single-cell electroporation for transfer of DNA and macromolecules. Nat Protoc, 1 (3). pp. 1267-72. ISSN 1750-2799 (Electronic)

Boddu, J., Jiang, C., Sangar, V., Olson, T., Peterson, T., Chopra, S. (January 2006) Comparative structural and functional characterization of sorghum and maize duplications containing orthologous Myb transcription regulators of 3-deoxyflavonoid biosynthesis. Plant Molecular Biology, 60 (2). pp. 185-199. ISSN 01674412

Boehm, J., Kang, M-G., Johnson, R. C., Esteban, J. A., Huganir, R. L., Malinow, R. (July 2006) Synaptic incorporation of AMPA receptors during LTP is controlled by a PKC phosphorylation site on GluR1. Neuron, 51 (2). pp. 213-25. ISSN 0896-6273 (Print)

Boehm, J. S., Ehrlich, I., Hsieh, H., Malinow, R. (September 2006) Two mutations preventing PDZ-protein interactions of GluR1 have opposite effects on synaptic plasticity. Learn Mem, 13 (5). pp. 562-5. ISSN 1072-0502 (Print)

Bokil, H. S., Pesaran, B., Andersen, R. A., Mitra, P. P. (August 2006) A method for detection and classification of events in neural activity. IEEE Trans Biomed Eng, 53 (8). pp. 1678-87. ISSN 0018-9294 (Print)

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Bortiri, E., Chuck, G., Vollbrecht, E., Rocheford, T. R., Martienssen, R. A., Hake, S. (March 2006) ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell, 18 (3). pp. 574-585. ISSN 10404651

Bortiri, E., Jackson, D. P., Hake, S. (April 2006) Advances in maize genomics: The emergence of positional cloning. Current Opinion in Plant Biology, 9 (2). pp. 164-171. ISSN 13695266

Brecht, M., Grinevich, V., Jin, T. E., Margrie, T., Osten, P. (December 2006) Cellular mechanisms of motor control in the vibrissal system. Pflügers Archiv - European Journal of Physiology, 453 (3). pp. 269-81. ISSN 0031-6768 (Print)

Brenner, M., Münch, J., Schindler, M., Wildum, S., Stolte, N., Stahl-Hennig, C., Fuchs, D., Mätz-Rensing, K., Franz, M., Heeney, J. L., Ten Haaft, P., Swigut, T., Hrecka, K., Skowronski, J., Kirchhoff, F. (May 2006) Importance of the N-distal AP-2 binding element in Nef for simian immunodeficiency virus replication and pathogenicity in rhesus macaques. Journal of Virology, 80 (9). pp. 4469-4481. ISSN 0022538X

Bureau, I., Shepherd, G., Svoboda, K. (December 2006) Defects in the developing cortical circuits of fmr1 mutant mice. International Journal of Developmental Neuroscience, 24 (8). p. 480. ISSN 0736-5748

Bureau, I., von Saint Paul, F., Svoboda, K. (December 2006) Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS Biology, 4 (12). pp. 2361-2371. ISSN 1544-9173

C

Canaran, P., Stein, L. D., Ware, D. H. (April 2006) Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support. Bioinformatics, 22 (7). pp. 885-6. ISSN 1367-4803 (Print)

Carroll, D. K., Carroll, J. S., Leong, C. O., Cheng, F., Brown, M., Mills, A. A., Brugge, J. S., Ellisen, L. W. (June 2006) p63 regulates an adhesion programme and cell survival in epithelial cells. Nature Cell Biology, 8 (6). pp. 551-561. ISSN 14657392

Carroll, J. S., Meyer, C. A., Song, J., Li, W., Geistlinger, T. R., Eeckhoute, J., Brodsky, A. S., Keeton, E. K., Fertuck, K. C., Hall, G. F., Wang, Q., Bekiranov, S., Sementchenko, V., Fox, E. A., Silver, P. A., Gingeras, T. R., Liu, X. S., Brown, M. (November 2006) Genome-wide analysis of estrogen receptor binding sites. Nature Genetics, 38 (11). pp. 1289-1297. ISSN 1061-4036

Cartegni, L., Hastings, M. L., Calarco, J. A., de Stanchina, E., Krainer, A. R. (January 2006) Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2. Am J Hum Genet, 78 (1). pp. 63-77. ISSN 0002-9297 (Print)

Castellano, S., Macchi, F., Scali, M., Huang, Z. J., Bozzi, Y. (September 2006) Cytosolic branched chain aminotransferase (BCATc) mRNA is up-regulated in restricted brain areas of BDNF transgenic mice. Brain Research, 1108 (1). pp. 12-18. ISSN 00068993

Cetin, A., Komai, S., Eliava, M., Seeburg, P. H., Osten, P. (2006) Stereotaxic gene delivery in the rodent brain. Nature Protocols, 1 (6). ISSN 17542189 (ISSN)

Chang, K., Elledge, S. J., Hannon, G. J. (September 2006) Lessons from Nature: microRNA-based shRNA libraries. Nat Methods, 3 (9). pp. 707-14. ISSN 1548-7091 (Print)

Chen, B. L., Chklovskii, D. B. (April 2006) Placement and routing optimization in the brain. Proceedings of the 2006 international symposium on Physical design, 2006. pp. 136-141.

Chen, B. L., Hall, D. H., Chklovskii, D. B. (March 2006) Wiring optimization can relate neuronal structure and function. Proc Natl Acad Sci U S A, 103 (12). pp. 4723-8. ISSN 0027-8424 (Print)

Chen, N., Mah, A., Blacque, O. E., Chu, J., Phgora, K., Bakhoum, M. W., Newbury, C. R. Hunt, Khattra, J., Chan, S. W., Go, A., Efimenko, E., Johnsen, R. C., Phirke, P., Swoboda, P., Marra, M., Moerman, D. G., Leroux, M. R., Baillie, D. L., Stein, L. D. (December 2006) Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics. Genome Biology, 7 (12). R126. ISSN 1474-760X

Chen, N., Stein, L. D. (May 2006) Conservation and functional significance of gene topology in the genome of Caenorhabditis elegans. Genome Res, 16 (5). pp. 606-17. ISSN 1088-9051 (Print)

Cheng, R., Juo, S. H., Loth, J. E., Nee, J., Iossifov, I., Blumenthal, R., Sharpe, L., Kanyas, K., Lerer, B., Lilliston, B., Smith, M., Trautman, K., Gilliam, T. C., Endicott, J., Baron, M. (March 2006) Genome-wide linkage scan in a large bipolar disorder sample from the National Institute of Mental Health genetics initiative suggests putative loci for bipolar disorder, psychosis, suicide, and panic disorder. Mol Psychiatry, 11 (3). pp. 252-60. ISSN 1359-4184 (Print)1359-4184 (Linking)

Collins, G. A., Tansey, W. P. (April 2006) The proteasome: a utility tool for transcription? Curr Opin Genet Dev, 16 (2). pp. 197-202. ISSN 0959-437X (Print)

Connell, L. E., Helfman, D. M. (June 2006) Myosin light chain kinase plays a role in the regulation of epithelial cell survival. J Cell Sci, 119 (Pt 11). pp. 2269-81. ISSN 0021-9533 (Print)

Connelly, J. J., Yuan, P., Hsu, H. C., Li, Z., Xu, R. M., Sternglanz, R. (April 2006) Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain. Mol Cell Biol, 26 (8). pp. 3256-65. ISSN 0270-7306 (Print)

Cormier, C. (2006) Alternative Apoptotic Pathways in Cancer Cells. PhD thesis, Cold Spring Harbor Laboratory.

D

Das, D , Nahlé, Z , Zhang, M. Q. (June 2006) Adaptively inferring human transcriptional subnetworks. Mol Syst Biol, 2. pp. 2006-2029. ISSN 1744-4292 (Electronic)

Das, R., Dimitrova, N., Xuan, Z. Y., Rollins, R. A., Haghighi, F., Edwards, J. R., Ju, J. Y., Bestor, T. H., Zhang, M. Q. (July 2006) Computational prediction of methylation status in human genomic sequences. Proc Natl Acad Sci U S A, 103 (28). pp. 10713-6. ISSN 0027-8424 (Print)

De Paola, V., Holtmaat, A. J. G. D., Knott, G. W., Song, S., Wilbrecht, L., Caroni, P., Svoboda, K. (March 2006) Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron, 49 (6). pp. 861-75. ISSN 0896-6273 (Print)

DeWeese, M. R., Zador, A. M. (February 2006) Neurobiology: Efficiency measures. Nature, 439 (7079). pp. 920-921. ISSN 00280836

DeWeese, M. R., Zador, A. M. (November 2006) Non-Gaussian membrane potential dynamics imply sparse, synchronous activity in auditory cortex. J Neurosci, 26 (47). pp. 12206-18. ISSN 1529-2401 (Electronic)

Dickins, R. A., Premsrirut, P., McJunkin, K., Kim, S. Y., Hannon, G. J., Lowe, S. W. (2006) Tetracycline-regulated p53 knockdown in cells and transgenic mice. Toxicologic Pathology, 34 (7). p. 1006. ISSN 0192-6233

Ding, J. X., Feng, Y. J., Yao, L. Q., Yu, M., Jin, H. Y., Yin, L. H. (2006) The reinforcement of invasion in epithelial ovarian cancer cells by 17?-Estradiol is associated with up-regulation of Snail. Gynecologic Oncology, 103 (2). pp. 623-630. ISSN 00908258

E

Emran, F., Florens, L., Ma, B., Swanson, S. K., Washburn, M. P., Hernandez, N. (August 2006) A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes. Gene, 377. pp. 96-108. ISSN 0378-1119 (Print)

Encinas, J. M., Vaahtokari, A., Enikolopov, G. N. (May 2006) Fluoxetine targets early progenitor cells in the adult brain. Proc Natl Acad Sci U S A, 103 (21). pp. 8233-8. ISSN 0027-8424 (Print)

Ende, G., Walter, S., Welzel, H., Demirakca, T., Wokrina, T., Ruf, M., Ulrich, M., Diehl, A., Henn, F. A., Mann, K. (August 2006) Alcohol consumption significantly influences the MR signal of frontal choline-containing compounds. Neuroimage, 32 (2). pp. 740-6. ISSN 1053-8119 (Print)1053-8119 (Linking)

Enemark, E. J., Joshua-Tor, L. (July 2006) Mechanism of DNA translocation in a replicative hexameric helicase. Nature, 442 (7100). pp. 270-275. ISSN 1476-4687 (Electronic) (Public Dataset)

Enikolopov, G. (June 2006) NO and neural stem cells. Nitric Oxide-Biology and Chemistry, 14 (4). A6-A7. ISSN 1089-8603

Ewald, R. C. (April 2006) NMDA receptor subtypes and dendritic arbor morphology. PhD thesis, Cold Spring Harbor Laboratory.

Ezhkova, E., Tansey, William P. (2006) Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast. Methods in Molecular Biology, 313. pp. 225-44. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

F

Fang, F., Fan, S., Zhang, X., Zhang, M. Q. (2006) Predicting methylation status of CpG islands in the human brain. Bioinformatics, 22 (18). pp. 2204-2209. ISSN 13674803

Feierstein, C. E. , Quirk, M. C., Uchida, N., Sosulski, D. L., Mainen, Z. F. (August 2006) Representation of spatial goals in rat orbitofrontal cortex. Neuron, 51 (4). pp. 495-507. ISSN 0896-6273 (Print)

Feng, Z., Jin, S., Zupnick, A., Hoh, J., De Stanchina, E., Lowe, S. W., Prives, C., Levine, A. J. (2006) p53 tumor suppressor protein regulates the levels of huntingtin gene expression. Oncogene, 25 (1). pp. 1-7. ISSN 09509232

Fesen, R. A., Hammell, M. C., Morse, J., Chevalier, R. A., Borkowski, K. J., Dopita, M. A., Gerardy, C. L., Lawrence, S. S., Raymond, J. C., van den Bergh, S. (January 2006) Discovery of outlying high-velocity oxygen-rich ejecta in Cassiopeia A. Astrophysical Journal, 636 (2). pp. 859-872. ISSN 0004-637X

Fesen, R. A., Hammell, M. C., Morse, J., Chevalier, R. A., Borkowski, K. J., Dopita, M. A., Gerardy, C. L., Lawrence, S. S., Raymond, J. C., van den Bergh, S. (July 2006) The expansion asymmetry and age of the Cassiopeia A supernova remnant. Astrophysical Journal, 645 (1). pp. 283-292. ISSN 0004-637X

Friml, Jiří, Benfey, Philip, Benková, Eva, Bennett, Malcolm, Berleth, Thomas, Geldner, Niko, Grebe, Markus, Heisler, Marcus, Hejátko, Jan, Jürgens, Gerd, Laux, Thomas, Lindsey, Keith, Lukowitz, Wolfgang, Luschnig, Christian, Offringa, Remko, Scheres, Ben, Swarup, Raanjan, Torres-Ruiz, Ramón, Weijers, Dolf, Zažímalová, Eva (2006) Apical-basal polarity: Why plant cells don't standon their heads. Trends in Plant Science, 11 (1). pp. 12-14. ISSN 13601385

G

Gadue, P., Huber, T. L., Paddison, P. J., Keller, G. M. (2006) Wnt and TGF-ß signaling are required for the induction of an in vitro model of primitive streak formation using embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America, 103 (45). pp. 16806-16811. ISSN 00278424

Gandhi, R., Gillespie, P. J., Hirano, T. (December 2006) Human Wapl Is a Cohesin-Binding Protein that Promotes Sister-Chromatid Resolution in Mitotic Prophase. Curr Biol, 16 (24). pp. 2406-17. ISSN 0960-9822 (Print)

Gao, M., Li, G., Potter, D., McCombie, W. R., Quiros, C. F. (2006) Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and Arabidopsis thaliana. Plant Cell Reports, 25 (6). pp. 592-598. ISSN 07217714

Garcia, D., Collier, S. A., Byrne, M. E., Martienssen, R. A. (May 2006) Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Curr Biol, 16 (9). pp. 933-8. ISSN 0960-9822 (Print)

Geurts, A. M., Collier, L. S., Geurts, J. L., Oseth, L. L., Bell, M. L., Mu, David, Lucito, R., Godbout, S. A., Green, L. E., Lowe, S. W., Hirsch, B. A., Leinwand, L. A., Largaespada, D. A. (2006) Gene mutations and genomic rearrangements in the mouse as a result of transposon mobilization from chromosomal concatemers. PLoS Genetics, 2 (9). pp. 1413-1423. ISSN 15537390

Ghosh, S., Hirsch, H. A., Sekinger, E., Struhl, K., Gingeras, T. R. (October 2006) Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments. BMC Bioinformatics, 7. ISSN 1471-2105

Gillis, J. A., Zhang, L., Skinner, F. K. (2006) Deficiencies in traditional measures of in vitro hippocampal rhythms. Neurocomputing, 69 (10-12). pp. 1385-1390. ISSN 09252312 (ISSN)

Gingeras, T. R. (2006) The multitasking genome. Nature Genetics, 38 (6). pp. 608-609. ISSN 10614036 (ISSN)

Girard, A., Sachidanandam, R., Hannon, G. J., Carmell, M. A. (2006) A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature, 442 (7099). pp. 199-202. ISSN 00280836

Gogolla, N., Galimberti, I., DePaola, V., Caroni, P. (September 2006) Long-term live imaging of neuronal circuits in organotypic hippocampal slice cultures. Nature Protocols, 1 (3). pp. 1223-1226. ISSN 1745-2473

Gogolla, N., Galimberti, I., DePaola, V., Caroni, P. (2006) Preparation of organotypic hippocampal slice cultures for long-term live imaging. Nature Protocols, 1 (3). pp. 1165-1171. ISSN 1745-2473

Gogolla, N., Galimberti, I., DePaola, V., Caroni, P. (2006) Staining protocol for organotypic hippocampal slice cultures. Nat. Protocols, 1 (5). pp. 2452-2456.

Golding, M. C., Long, C. R., Carmell, M. A., Hannon, G. J., Westhusin, M. E. (April 2006) Suppression of prion protein in livestock by RNA interference. Proc Natl Acad Sci U S A, 103 (14). pp. 5285-90. ISSN 0027-8424 (Print)

Gracheva, E. O., Burdina, A. O., Holgado, A. M., Berthelot-Grosjean, M., Ackley, B. D., Hadwiger, G., Nonet, M. L., Weimer, R. M., Richmond, J. E. (2006) Tomosyn inhibits synaptic vesicle priming in Caenorhabditis elegans. PLoS Biology, 4 (8). pp. 1426-1437. ISSN 15457885

Gray, N. W., Weimer, R. M., Bureau, I., Svoboda, K. (November 2006) Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biol, 4 (11). e370. ISSN 1545-7885 (Electronic)

Grubor, V. D., Troge, J. E., Meth, J. L., Lakshmi, B., Yamron, B., Hufnagel, L. A., Lee, Y. H., Kendall, J. T., Pai, D., Lee, A., Gregersen, P., Yancopoulos, S., Allen, S., Rai, K. R., Chiorazzi, N., Wigler, M. H., Esposito, D. (November 2006) Genome Analysis of CLL by Representational Oligonucleotide Microarray Analysis (ROMA). ASH Annual Meeting Abstracts, 108 (11). p. 2085.

Guigó, R., Flicek, P., Abril, J. F., Reymond, A., Lagarde, J., Denoeud, F., Antonarakis, S., Ashburner, M., Bajic, V. B., Birney, E., Castelo, R., Eyras, E., Ucla, C., Gingeras, T. R., Harrow, J., Hubbard, T., Lewis, S. E., Reese, M. G. (2006) EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biology, 7 Supp. S2.1-31. ISSN 14656914 (ISSN)

Guo, H. F., Zhong, Y. (April 2006) Requirement of Akt to mediate long-term synaptic depression in Drosophila. J Neurosci, 26 (15). pp. 4004-14. ISSN 1529-2401 (Electronic)

Gurden, H., Uchida, N., Mainen, Z. F. (October 2006) Sensory-evoked intrinsic optical signals in the olfactory bulb are coupled to glutamate release and uptake. Neuron, 52 (2). pp. 335-45. ISSN 0896-6273 (Print)

H

Haas, K., Li, J., Cline, H. T. (August 2006) AMPA receptors regulate experience-dependent dendritic arbor growth in vivo. PNAS, 103 (32). pp. 12127-12131.

Hannan, F., Ho, I., Tong, J. J., Zhu, Y., Nurnberg, P., Zhong, Y. (April 2006) Effect of neurofibromatosis type I mutations on a novel pathway for adenylyl cyclase activation requiring neurofibromin and Ras. Hum Mol Genet, 15 (7). pp. 1087-98. ISSN 0964-6906 (Print)

Hannon, G. J., Rivas, F. V., Murchison, E. P., Steitz, J. A. (2006) The Expanding Universe of Noncoding RNAs. Cold Spring Harb Symp Quant Biol, 71. pp. 551-564. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

Harris, T. W., Stein, L. D. (2006) WormBase: methods for data mining and comparative genomics. Methods Mol Biol, 351. pp. 31-50. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J. L., Stein, J., Klein, P., Hurwitz, B., Zhou, B., Rakhshan, F., Sanyal, A., Gill, N., Lin, J. Y., Walling, J. G., Luo, M. Z., Ammiraju, J. S. S., Kudrna, D., Kim, H. R., Ware, D., Wing, Rod A., San Miguel, P., Jackson, S. A. (2006) Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. BMC Genomics, 7. p. 199. ISSN 14712164

Hemann, M. T., Lowe, S. W. (August 2006) The p53-Bcl-2 connection. Cell Death Differ, 13 (8). pp. 1256-9. ISSN 1350-9047 (Print)

Henderson, M. J., Munoz, M. A., Saunders, D. N., Clancy, J. L., Russell, A. J., Williams, B., Pappin, D., Khanna, K. K., Jackson, S. P., Sutherland, R. L., Watts, C. K. (December 2006) EDD mediates DNA damage-induced activation of CHK2. J Biol Chem, 281 (52). pp. 39990-40000. ISSN 0021-9258 (Print)0021-9258 (Linking)

Herbert, M. R., Russo, J. P., Yang, S., Roohi, Jasmin, Blaxill, M., Kahler, S. G., Cremer, L., Hatchwell, Eli (2006) Autism and environmental genomics. NeuroToxicology, 27 (5). pp. 671-684. ISSN 0161813X

Hernando, E., Matushansky, I., Maki, R. G., Lowe, S. W., Cordon-Cardo, C. (2006) RNA interference against cancer associated genes. Annals of Oncology, 17 (Supp 9). p. 45. ISSN 0923-7534

Herz, A. V. M., Gollisch, T., Machens, C. K., Jaeger, D. (2006) Modeling single-neuron dynamics and computations: A balance of detail and abstraction. Science, 314 (5796). pp. 80-85. ISSN 00368075

Hicks, J. B., Krasnitz, A., Lakshmi, B., Navin, N. E., Riggs, M., Leibu, E., Esposito, D., Alexander, J., Troge, J. E., Grubor, V., Yoon, S., Wigler, M. H., Ye, K., Borresen-Dale, A. L., Naume, B., Schlicting, E., Norton, L., Hagerstrom, T., Skoog, L., Auer, G., Månér, S., Lundin, P., Zetterberg, A. (December 2006) Novel patterns of genome rearrangement and their association with survival in breast cancer. Genome Research, 16 (12). pp. 1465-79. ISSN 1088-9051

Hicks, J. B. (2006) Data file sw.dip.amps.txt for deletions. [Dataset] (Unpublished)

Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., Diekhans, M., Furey, T. S., Harte, R. A., Hsu, F., Hillman-Jackson, J., Kuhn, R. M., Pedersen, J. S., Pohl, A., Raney, B. J., Rosenbloom, K. R., Siepel, A., Smith, K. E., Sugnet, C. W., Sultan-Qurraie, A., Thomas, D. J., Trumbower, H., Weber, R. J., Weirauch, M., Zweig, A. S., Haussler, D., Kent, W. J. (January 2006) The UCSC Genome Browser Database: update 2006. Nucleic Acids Res, 34 (Databa). D590-8. ISSN 0305-1048

Hirano, M., Hirano, T. (January 2006) Opening closed arms: long-distance activation of SMC ATPase by hinge-DNA interactions. Mol Cell, 21 (2). pp. 175-86. ISSN 1097-2765 (Print)

Hirano, T. (May 2006) At the heart of the chromosome: SMC proteins in action. Nat Rev Mol Cell Biol, 7 (5). pp. 311-22. ISSN 1471-0072 (Print)

Holtmaat, A. J. G. D., Wilbrecht, L., Knott, G. W., Welker, E., Svoboda, K. (June 2006) Experience-dependent and cell-type-specific spine growth in the neocortex. Nature, 441 (7096). pp. 979-83. ISSN 1476-4687 (Electronic)

Hsieh, H., Boehm, J., Sato, C., Iwatsubo, T., Tomita, T., Sisodia, S., Malinow, R. (December 2006) AMPAR removal underlies Abeta-induced synaptic depression and dendritic spine loss. Neuron, 52 (5). pp. 831-43. ISSN 0896-6273 (Print)

Hu, G., Lin, G., Wang, M., Dick, L., Xu, R. M., Nathan, C., Li, H. (2006) Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate. Molecular Microbiology, 59 (5). pp. 1417-1428. ISSN 0950382X

Huang, Y., Fang, J., Bedford, M. T., Zhang, Y., Xu, R. M. (May 2006) Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A. Science, 312 (5774). pp. 748-51. ISSN 1095-9203 (Electronic)

Huang, Y., Myers, M. P., Xu, R. M. (April 2006) Crystal structure of the HP1-EMSY complex reveals an unusual mode of HP1 binding. Structure, 14 (4). pp. 703-12. ISSN 0969-2126 (Print)

Huang, Z. J. (May 2006) GABAB receptor isoforms caught in action at the scene. Neuron, 50 (4). pp. 521-4. ISSN 0896-6273 (Print)

Huang, Z. J. (February 2006) Subcellular organization of GABAergic synapses: role of ankyrins and L1 cell adhesion molecules. Nat Neurosci, 9 (2). pp. 163-166.

I

Irvine, D. V., Zaratiegui, Mi., Tolia, N. H., Goto, D. B., Chitwood, D. H., Vaughn, M. W., Joshua-Tor, L., Martienssen, R. A. (August 2006) Argonaute slicing is required for heterochromatic silencing and spreading. Science, 313 (5790). pp. 1134-7. ISSN 1095-9203 (Electronic)

Izumo, M., Sato, T. R., Straume, M., Johnson, C. H. (October 2006) Quantitative analyses of circadian gene expression in mammalian cell cultures. PLoS Computational Biology, 2 (10). pp. 1248-1261. ISSN 1553734X

J

Janas, J. A., Skowronski, J., Van Aelst, L. (2006) Lentiviral delivery of RNAi in hippocampal neurons. Methods Enzymol, 406. pp. 593-605. ISSN 0076-6879 (Print)

Joshua-Tor, L. (2006) The argonautes. Cold Spring Harb Symp Quant Biol, 71. pp. 67-72. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

Jura, N., Scotto-Lavino, E., Sobczyk, A., Bar-Sagi, D. (2006) Differential modification of Ras proteins by ubiquitination. Molecular Cell, 21 (5). pp. 679-687. ISSN 10972765

K

Karsten, S. L., Sang, T. K., Gehman, L. T., Chatterjee, S., Liu, J., Lawless, G. M., Sengupta, S., Berry, R. W., Pomakian, J., Oh, H. S., Schulz, C., Hui, K. S., Wiedau-Pazos, M., Vinters, H. V., Binder, L. I., Geschwind, D. H., Jackson, G. R. (2006) A Genomic Screen for Modifiers of Tauopathy Identifies Puromycin-Sensitive Aminopeptidase as an Inhibitor of Tau-Induced Neurodegeneration. Neuron, 51 (5). pp. 549-560. ISSN 08966273

Kelly, T. J., Stillman, B. (2006) Duplication of DNA in eukaryotic cells. In: DNA replication and human disease. Cold Spring Harbor Monograph Series, 46 . Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 1-30. ISBN 0879697660

Kemper, E. M., Leenders, W., Kusters, B., Lyons, S., Buckle, T., Heerschap, A., Boogerd, W., Beijnen, J. H., van Tellingen, O. (December 2006) Development of luciferase tagged brain tumour models in mice for chemotherapy intervention studies. Eur J Cancer, 42 (18). pp. 3294-303. ISSN 0959-8049 (Print)0959-8049 (Linking)

Kepecs, A., Uchida, N., Mainen, Z . F. (February 2006) The sniff as a unit of olfactory processing. Chem Senses, 31 (2). pp. 167-79. ISSN 0379-864X (Print)

Keyes, W. M., Mills, A. A. (February 2006) p63: a new link between senescence and aging. Cell Cycle, 5 (3). pp. 260-265. ISSN 15384101

Keyes, W. M., Vogel, H., Koster, M. I., Guo, X., Qi, Y., Petherbridge, K. M., Roop, D. R., Bradley, A., Mills, A. A. (May 2006) p63 heterozygous mutant mice are not prone to spontaneous or chemically induced tumors. Proc Natl Acad Sci U S A, 103 (22). pp. 8435-40. ISSN 0027-8424 (Print)

Khulan, B., Thompson, R. F., Ye, K., Fazzari, M. J., Suzuki, M., Stasiek, E., Figueroa, M. E., Glass, J. L., Chen, Q., Montagna, C., Hatchwell, E., Selzer, R. R., Richmond, T. A., Green, R. D., Melnick, A., Greally, J. M. (2006) Comparative isoschizomer profiling of cytosine methylation: The HELP assay. Genome Research, 16 (8). pp. 1046-1055. ISSN 10889051

Kim, Y. C., Jung, Y. C., Xuan, Z., Dong, H., Zhang, M. Q., Wang, S. M. (December 2006) Pan-genome isolation of low abundance transcripts using SAGE tag. Febs Letters, 580 (28-29). pp. 6721-6729. ISSN 0014-5793

Kimura, H., Takizawa, N., Allemand, E., Hori, T., Iborra, F. J., Nozaki, N., Muraki, M., Hagiwara, M., Krainer, A. R., Fukagawa, T., Okawa, K. (2006) A novel histone exchange factor, protein phosphatase 2Cgamma, mediates the exchange and dephosphorylation of H2A-H2B. Journal of Cell Biology, 175 (3). pp. 389-400. ISSN 00219525

Knott, G. W., Holtmaat, A. J. G. D., Wilbrecht, L., Welker, E., Svoboda, K. (August 2006) Spine growth precedes synapse formation in the adult neocortex in vivo. Nature Neuroscience, 9 (9). pp. 1117-1124. ISSN 10976256

Knott, Graham W., Mulders, H., Wall, D. C., Chklovskii, D. B., Reyntjens, S., Lich, B. H. (2006) A novel automated approach to serial block face dualbeam electron microscopy for the exploration of cortical circuits. Microscopy and Microanalysis, 12 (SUPPL.). pp. 1236-1237. ISSN 14319276

Komai, S., Denk, W., Osten, P., Brecht, M., Margrie, T. W. (2006) Two-photon targeted patching (TPTP) in vivo. Nature Protocols, 1 (2). pp. 647-52. ISSN 1745-2473

Komai, S., Licznerski, P., Cetin, A., Waters, J., Denk, W., Brecht, M., Osten, P. (September 2006) Postsynaptic excitability is necessary for strengthening of cortical sensory responses during experience-dependent development. Nature Neuroscience, 9 (9). pp. 1125-33. ISSN 1097-6256

Kopec, C. D. (April 2006) AMPA Receptor Trafficking and their Effect on Spine Enlargement during Long-term Potentiation. PhD thesis, Cold Spring Harbor Laboratory.

Kopec, C. D., Li, B., Wei, W., Boehm, J., Malinow, R. (February 2006) Glutamate receptor exocytosis and spine enlargement during chemically induced long-term potentiation. J Neurosci, 26 (7). pp. 2000-9. ISSN 1529-2401 (Electronic)

Kopec, C. D., Malinow, R. (December 2006) Neuroscience. Matters of size. Science, 314 (5805). pp. 1554-5. ISSN 1095-9203 (Electronic)

Krainer, A. R., Karni, R. (March 2006) Oncogenic activity of alternative splicing factors. Faseb Journal, 20 (4). A456-A456. ISSN 0892-6638

Kuhlman, S. J., McMahon, D. G. (December 2006) Encoding the ins and outs of circadian pacemaking. J Biol Rhythms, 21 (6). pp. 470-81. ISSN 0748-7304 (Print)

L

Lakshmi, B., Hall, I. M., Egan, C., Alexander, J., Leotta, A., Healy, J., Zender, L., Spector, M. S., Xue, W., Lowe, S. W., Wigler, M. H., Lucito, R. (July 2006) Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens. Proc Natl Acad Sci U S A, 103 (30). pp. 11234-9. ISSN 0027-8424 (Print)

Lamonica, J. M., Vakoc, C. R., Blobel, G. A. (2006) Acetylation of GATA-1 is required for chromatin occupancy. Blood, 108 (12). pp. 3736-3738. ISSN 00064971 (ISSN)

Lamonica, J. M., Vakoc, C. R., Blobel, G. A. (November 2006) Acetylation of GATA-1 is required for chromatin occupancy. Blood, 108 (11). 348A-348A. ISSN 0006-4971

Lariguet, P., Schepens, I., Hodgson, D., Pedmale, U. V., Trevisan, M., Kami, C., de Carbonnel, M., Alonso, J. M., Ecker, J. R., Liscum, E., Fankhauser, C. (June 2006) PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proc Natl Acad Sci U S A, 103 (26). pp. 10134-9. ISSN 0027-8424 (Print)0027-8424

Laurikkala, J., Mikkola, M. L., James, M., Tummers, M., Mills, A. A., Thesleff, I. (2006) p63 regulates multiple signalling pathways required for ectodermal organogenesis and differentiation. Development, 133 (8). pp. 1553-1563. ISSN 09501991

Lee, R. C., Hammell, C. M., Ambros, V. (2006) Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans. RNA, 12 (4). pp. 589-597. ISSN 13558382 (ISSN)

Lee, H., Quinn, J. C., Prasanth, K. V. , Swiss, V. A., Economides, K. D., Camacho, M. M., Spector, D. L., Abate-Shen, C. (December 2006) PIAS1 confers DNA-binding specificity on the Msx1 homeoprotein. Genes and Development, 20 (7). pp. 784-794. ISSN 08909369

Li, J., Zhang, M. Q., Zhang, X. (2006) A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data. American Journal of Human Genetics, 79 (4). pp. 628-639. ISSN 00029297

Li, Z., Cao, R., Wang, M., Myers, M. P., Zhang, Y., Xu, R. M. (July 2006) Structure of a Bmi-1-Ring1B polycomb group ubiquitin ligase complex. J Biol Chem, 281 (29). pp. 20643-9. ISSN 0021-9258 (Print)

Lin, D. Y., Shea, S. D., Katz, L. C. (2006) Representation of Natural Stimuli in the Rodent Main Olfactory Bulb. Neuron, 50 (6). pp. 937-949. ISSN 08966273 (ISSN)

Liu, W., Putnam, A. L., Xu-yu, Z., Szot, G. L., Lee, M. R., Zhu, S., Gottlieb, P. A., Kapranov, P., Gingeras, T. R., De St. Groth, B. F., Clayberger, C., Soper, D. M., Ziegler, S. F., Bluestone, J. A. (2006) CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells. Journal of Experimental Medicine, 203 (7). pp. 1701-1711. ISSN 00221007 (ISSN)

Locke, S. M., Martienssen, R. A. (2006) Slicing and spreading of heterochromatic silencing by RNA interference. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 497-503. ISSN 00917451 (ISSN)

Lyons, S. K., Lim, E., Clermont, A. O., Dusich, J., Zhu, L., Campbell, K. D., Coffee, R. J., Grass, D. S., Hunter, J., Purchio, T., Jenkins, D. (May 2006) Noninvasive bioluminescence imaging of normal and spontaneously transformed prostate tissue in mice. Cancer Res, 66 (9). pp. 4701-7. ISSN 0008-5472 (Print)0008-5472 (Linking)

M

Madsen, P. P., Kibæk, M., Roca, X., Sachidanandam, R., Krainer, A. R., Christensen, E., Steiner, R. D., Gibson, K. M., Corydon, T. J., Knudsen, I., Wanders, R. J. A., Ruiter, J. P. N., Gregersen, N., Andresen, B. S. (2006) Short/branched-chain acyl-CoA dehydrogenase deficiency due to an IVS3+3A>G mutation that causes exon skipping. Human Genetics, 118 (6). pp. 680-690. ISSN 03406717

Maher, C., Stein, L. D., Ware, D. (April 2006) Evolution of Arabidopsis microRNA families through duplication events. Genome Res, 16 (4). pp. 510-9. ISSN 1088-9051 (Print)

Mainen, Z. F. (August 2006) Behavioral analysis of olfactory coding and computation in rodents. Curr Opin Neurobiol, 16 (4). pp. 429-34. ISSN 0959-4388 (Print)

Malinow, R. (December 2006) AMPA-R removal underlies A beta-induced synaptic depression and dendritic spine loss. Neuropsychopharmacology, 31 (Supple). S28-S29. ISSN 0893-133X

Manak, J. R., Dike, S., Sementchenko, V., Kapranov, P., Biemar, F., Long, J., Cheng, J., Bell, I., Ghosh, S., Piccolboni, A., Gingeras, T. R. (2006) Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nature Genetics, 38 (10). pp. 1151-1158. ISSN 10614036 (ISSN) (Public Dataset)

Mangone, M. (March 2006) Analysis of the HCF-1 basic region and its role in sustaining cell proliferation. PhD thesis, Cold Spring Harbor Laboratory.

Martinelli, S., Kostylina, G., Niggli, V., Baumann, C., Fey, M. F., Wendel, H. G., Lowe, S. W., Yousefi, S., Simon, H. U. (2006) Targeting survivin via PI3K but not c-akt/PKB by anticancer drugs in immature neutrophils. Oncogene, 25 (52). pp. 6915-6923. ISSN 09509232

Mason, D. X., Keppler, D., Zhang, J., Jackson, T. J., Seger, Y. R., Matsui, S., Abreo, F., Cowell, J. K., Hannon, G. J., Lowe, S. W., Lin, A. W. (February 2006) Defined genetic events associated with the spontaneous in vitro transformation of ElA/Ras-expressing human IMR90 fibroblasts. Carcinogenesis, 27 (2). pp. 350-359. ISSN 0143-3334 (Print)

Matapurkar, A., Lazebnik, Y. (December 2006) Requirement of cytochrome c for apoptosis in human cells. Cell Death Differ, 13 (12). pp. 2062-7. ISSN 1350-9047 (Print)

Matheson, S. F., Hu, K. Q., Brouns, M. R., Sordella, R., VanderHeide, J. D., Settleman, J. (2006) Distinct but overlapping functions for the closely related p190 RhoGAPs in neural development. Developmental Neuroscience, 28 (6). pp. 538-50. ISSN 0378-5866 (Print)

Mills, A. A. (February 2006) p63: oncogene or tumor suppressor? Curr Opin Genet Dev, 16 (1). pp. 38-44. ISSN 0959-437X (Print)

Mishchenko, Y. (February 2006) Remedy for the fermion sign problem in the diffusion Monte Carlo method for few fermions with antisymmetric diffusion process. Phys Rev E Stat Nonlin Soft Matter Phys, 73 (2 Pt 2). 026706. ISSN 1539-3755 (Print)

Mitra, P. P., Khammash, M. (September 2006) Special issue on "Control biology - Emerging field of life science that connects biology and control". Asian Journal of Control, 8 (3). III-IV. ISSN 1561-8625

Mitra, P. P., Maniar, H. (September 2006) Concentration maximization and local basis expansions (LBEX) for linear inverse problems. IEEE Trans Biomed Eng, 53 (9). pp. 1775-82. ISSN 0018-9294 (Print)

Muthuswamy, S. K. (August 2006) ErbB2 makes beta 4 integrin an accomplice in tumorigenesis. Cell, 126 (3). pp. 443-5. ISSN 0092-8674 (Print)

Määttä, J. A., Sundvall, M., Junttila, T. T., Peri, L., Laine, V. J. O., Isola, J., Egeblad, M., Elenius, K. (2006) Proteolytic cleavage and phosphorylation of a tumor-associated ErbB4 isoform promote ligand-independent survival and cancer cell growth. Molecular Biology of the Cell, 17 (1). pp. 67-79. ISSN 10591524 (ISSN)

N

Nadif Kasri, N., Kocks, S. L., Verbert, L., Hébert, S. S., Callewaert, G., Parys, J. B., Missiaen, L., De Smedt, H. (July 2006) Up-regulation of inositol 1,4,5-trisphosphate receptor type 1 is responsible for a decreased endoplasmic-reticulum Ca2+ content in presenilin double knock-out cells. Cell Calcium, 40 (1). pp. 41-51. ISSN 0143-4160 (Print)

Narita, M., Narita, M., Krizhanovsky, V., Nunez, S., Chicas, A., Hearn, S. A., Myers, M. P., Lowe, S. W. (August 2006) A novel role for high-mobility group a proteins in cellular senescence and heterochromatin formation. Cell, 126 (3). pp. 503-14. ISSN 0092-8674 (Print)

Navin, N. E., Grubor, V., Hicks, J. B., Leibu, E., Thomas, E., Troge, J., Riggs, M., Lundin, P., Månér, S., Sebat, J., Zetterberg, A., Wigler, M. H. (October 2006) PROBER: oligonucleotide FISH probe design software. Bioinformatics, 22 (19). pp. 2437-8. ISSN 1460-2059 (Electronic)

Nelson, K. K., Subbaram, S., Connor, K. M., Dasgupta, J., Ha, X. F., Meng, T. C., Tonks, N. K., Melendez, J. A. (2006) Redox-dependent matrix metalloproteinase-1 expression is regulated by JNK through Ets and AP-1 promoter motifs. Journal of Biological Chemistry, 281 (20). pp. 14100-14110. ISSN 00219258

Neuwald, A. F. (July 2006) Hypothesis: bacterial clamp loader ATPase activation through DNA-dependent repositioning of the catalytic base and of a trans-acting catalytic threonine. Nucleic Acids Res, 34 (18). pp. 5280-90. ISSN 1362-4962 (Electronic)

Neuwald, A. F. (July 2006) Bayesian shadows of molecular mechanisms cast in the light of evolution. Trends Biochem Sci, 31 (7). pp. 374-82. ISSN 0968-0004 (Print)

Nogueira, F. T., Sarkar, A. K., Chitwood, D. H., Timmermans, M. C. (2006) Organ Polarity in Plants Is Specified through the Opposing Activity of Two Distinct Small Regulatory RNAs. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 157-64. ISSN 00917451 (ISSN)

O

Olson, A., Sheth, N., Lee, J. S., Hannon, G. J., Sachidanandam, R. (January 2006) RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs. Nucleic Acids Res, 34 (Databa). D153-7. ISSN 1362-4962 (Electronic)

Olson, L. E., Tollkuhn, J., Scafoglio, C., Krones, A., Zhang, J., Ohgi, K. A., Wu, W., Taketo, M. M., Kemler, R., Grosschedl, R., Rose, D., Li, X., Rosenfeld, M. G. (May 2006) Homeodomain-mediated beta-catenin-dependent switching events dictate cell-lineage determination. Cell, 125 (3). pp. 593-605. ISSN 0092-8674 (Print)0092-8674 (Linking)

Ordway, J. M., Bedell, J. A., Citek, R. W., Nunberg, A., Garrido, A., Kendall, R., Stevens, J. R., Cao, D., Doerge, R. W., Korshunova, Y., Holemon, H., McPherson, J. D., Lakey, N., Leon, J., Martienssen, R. A., Jeddeloh, J. A. (December 2006) Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis, 27 (12). pp. 2409-23. ISSN 0143-3334 (Print)0143-3334 (Linking)

Osten, P., Stern-Bach, Y. (June 2006) Learning from stargazin: the mouse, the phenotype and the unexpected. Current Opinion in Neurobiology, 16 (3). pp. 275-80. ISSN 0959-4388

P

Pedersen, J. S., Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W., Haussler, D. (April 2006) Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput Biol, 2 (4). e33. ISSN 1553-734x

Pegoraro, G., Marcello, A., Myers, M. P., Giacca, M. (July 2006) Regulation of adeno-associated virus DNA replication by the cellular TAF-I/set complex. Journal of Virology, 80 (14). pp. 6855-6864. ISSN 0022538X

Pelham, R. J., Rodgers, L., Hall, I. M., Lucito, R., Nguyen, K. C. Q., Navin, N. E., Hicks, J. B., Mu, D., Powers, S., Wigler, M. H., Botstein, D. (December 2006) Identification of alterations in DNA copy number in host stromal cells during tumor progression. Proc Natl Acad Sci U S A, 103 (52). pp. 19848-19853. ISSN 0027-8424

Peunova, N., Ravi, K., Enikolopov, G., Scheinker, V. (June 2006) NO coordinates cell proliferation and morphogenetic cell movements during Xenopus early development. Nitric Oxide-Biology and Chemistry, 14 (4). A7-A7. ISSN 1089-8603

Politz, J. C. R., Tuft, R. A., Prasanth, K. V. , Baudendistel, N., Fogarty, K. E., Lifshitz, L. M., Langowski, J., Spector, D. L., Pederson, T. (March 2006) Rapid, diffusional shuttling of poly(A) RNA between nuclear speckles and the nucleoplasm. Molecular Biology of the Cell, 17 (3). pp. 1239-1249. ISSN 10591524

Pollard, K. S., Salama, S. R., King, B., Kern, A. D., Dreszer, T., Katzman, S., Siepel, A., Pedersen, J. S., Bejerano, G., Baertsch, R., Rosenbloom, K. R., Kent, J., Haussler, D. (October 2006) Forces shaping the fastest evolving regions in the human genome. PLoS Genet, 2 (10). e168. ISSN 1553-7390

Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M. A., Coppens, S., Pedersen, J. S., Katzman, S., King, B., Onodera, C., Siepel, A., Kern, A. D., Dehay, C., Igel, H., Ares, M., Vanderhaeghen, P., Haussler, D. (September 2006) An RNA gene expressed during cortical development evolved rapidly in humans. Nature, 443 (7108). pp. 167-72. ISSN 0028-0836

Pujar, An., Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, Sh., Stevens, P., Zapata, F., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L. D., Ware, D. H., McCouch, S. (October 2006) Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology, 142 (2). pp. 414-428. ISSN 00320889

Q

Qi, Y., He, X., Wang, X. J., Kohany, O., Jurka, J., Hannon, G. J. (October 2006) Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature, 443 (7114). pp. 1008-12. ISSN 1476-4687 (Electronic)

R

Reed, M. F., Zagorski, W. A., Howington, J. A., Zilfou, J. T., Knudsen, E. S. (2006) Inhibition of Retinoblastoma Tumor Suppressor Activity by RNA Interference in Lung Cancer Lines. Annals of Thoracic Surgery, 82 (1). pp. 249-253. ISSN 00034975

Reginato, M. J., Muthuswamy, S. K. (2006) Illuminating the center: Mechanisms regulating lumen formation and maintenance in mammary morphogenesis. Journal of Mammary Gland Biology and Neoplasia, 11 (3-4). pp. 205-211. ISSN 10833021

Revyakin, A., Liu, C., Ebright, R. H., Strick, T. R. (November 2006) Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching. Science, 314 (5802). pp. 1139-1143. ISSN 00368075

Rial Verde, E. M. , Lee-Osbourne, J., Worley, P. F., Malinow, R., Cline, H. T. (November 2006) Increased expression of the immediate-early gene arc/arg3.1 reduces AMPA receptor-mediated synaptic transmission. Neuron, 52 (3). pp. 461-74. ISSN 0896-6273 (Print)

Rinberg, D. A., Koulakov, A. A., Gelperin, A. (August 2006) Sparse odor coding in awake behaving mice. J Neurosci, 26 (34). pp. 8857-65. ISSN 1529-2401 (Electronic)

Rinberg, D. A., Koulakov, A. A., Gelperin, A. (August 2006) Speed-Accuracy Tradeoff in Olfaction. Neuron, 51 (3). pp. 351-358. ISSN 08966273

Rodriguez-Esteban, R., Iossifov, I., Rzhetsky, A. (September 2006) Imitating manual curation of text-mined facts in biomedicine. PLoS Comput Biol, 2 (9). e118. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Rollins, R. A., Haghighi, F., Edwards, J. R., Das, Rajdeep, Zhang, M. Q., Ju, J., Bestor, T. H. (2006) Large-scale structure of genomic methylation patterns. Genome Research, 16 (2). pp. 157-163. ISSN 10889051

Ronemus, M., Vaughn, M. W., Martienssen, R. A. (July 2006) MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell, 18 (7). pp. 1559-74. ISSN 1040-4651 (Print)

Rozowsky, J., Wu, J., Lian, Z., Nagalakshmi, U., Korbel, J. O., Kapranov, P., Zheng, D., Dyke, S., Newburger, P., Miller, P., Gingeras, T. R., Weissman, S., Gerstein, M., Snyder, M. (2006) Novel transcribed regions in the human genome. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 111-116. ISSN 00917451 (ISSN)

Ruthazer, E. S., Li, J., Cline, H. T. (March 2006) Stabilization of axon branch dynamics by synaptic maturation. J Neurosci, 26 (13). pp. 3594-603. ISSN 1529-2401 (Electronic)

Rzhetsky, A., Iossifov, I., Loh, J. M., White, K. P. (March 2006) Microparadigms: chains of collective reasoning in publications about molecular interactions. Proceedings of the National Academy of Sciences of the United States of America, 103 (13). pp. 4940-5. ISSN 0027-8424

S

Salvaing, J., Decoville, M., Mouchel-Vielh, E., Bussière, M., Daulny, A., Boldyreva, L., Zhimulev, I., Locker, D., Peronnet, F. (April 2006) Corto and DSPI interact and bind to a maintenance element of the Scr Hox gene: Understanding the role of Enhancers of trithorax and Polycomb. BMC Biology, 4 (9). ISSN 17417007

Sartorius, A., Krier, A., Andres, F. J., Bender, H. J., Krumm, B., Henn, F. A. (June 2006) Bispectral index monitoring for more effective electroconvulsive therapy? Br J Anaesth, 96 (6). pp. 806-7. ISSN 0007-0912 (Print)0007-0912 (Linking)

Sartorius, A., Munoz-Canales, E. M., Krumm, B., Krier, A., Andres, F. J., Bender, H. J., Henn, F. A. (November 2006) ECT anesthesia: the lighter the better? Pharmacopsychiatry, 39 (6). pp. 201-4. ISSN 0176-3679 (Print)0176-3679 (Linking)

Sartorius, A., Schloss, P., Vollmayr, B., Ende, G., Neumann-Haefelin, C., Hoehn, M., Henn, F. A. (2006) Correlation between MR-spectroscopic rat hippocampal choline levels and phospholipase A2. World J Biol Psychiatry, 7 (4). pp. 246-50. ISSN 1562-2975 (Print)1562-2975 (Linking)

Satoh-Nagasawa, N., Nagasawa, N., Malcomber, S., Sakai, H., Jackson, D. (May 2006) A trehalose metabolic enzyme controls inflorescence architecture in maize. Nature, 441 (7090). pp. 227-30. ISSN 1476-4687 (Electronic)

Scheuss, V., Yasuda, R., Sobczyk, A., Svoboda, K. (August 2006) Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. J Neurosci, 26 (31). pp. 8183-94. ISSN 1529-2401 (Electronic)

Schuck, S., Stenlund, A. (August 2006) Surface mutagenesis of the bovine papillomavirus E1 DNA binding domain reveals residues required for multiple functions related to DNA replication. J Virol, 80 (15). pp. 7491-9. ISSN 0022-538X (Print)

Schumacher, A., Kapranov, P., Kaminsky, Z., Flanagan, J., Assadzadeh, A., Yau, P., Virtanen, C., Winegarden, N., Cheng, J., Gingeras, T., Petronis, A. (2006) Microarray-based DNA methylation profiling: Technology and applications. Nucleic Acids Research, 34 (2). pp. 528-542. ISSN 03051048 (ISSN)

Schwarz, E. M., Antoshechkin, I., Bastiani, C., Bieri, T., Blasiar, D., Canaran, P., Chan, J., Chen, N., Chen, W. J., Davis, P., Fiedler, T. J., Girard, L., Harris, T. W., Kenny, E. E., Kishore, R., Lawson, D., Lee, R., Muller, H. M., Nakamura, C., Ozersky, P., Petcherski, A., Rogers, A., Spooner, W., Tuli, M. A., Van Auken, K., Wang, D., Durbin, R., Spieth, J., Stein, L. D., Sternberg, P. W. (January 2006) WormBase: better software, richer content. Nucl. Acids Res., 34 (suppl_). D475-478.

Seandel, M., Shia, J., Linkov, I., Maki, R. G., Antonescu, C. R., Dupont, J. (October 2006) The activity of sunitinib against gastrointestinal stromal tumor seems to be distinct from its antiangiogenic effects. Clin Cancer Res, 12 (20 Pt ). pp. 6203-4. ISSN 1078-0432 (Print)1078-0432 (Linking)

Sebat, J., Lakshmi, B., Troge, J., Martin, C., Spence, S., Ledbetter, D., Gilliam, T. C., Ye, K., Geschwind, D., Sutcliffe, J., Wigler, M. H. (December 2006) High-resolution analysis of genome copy number variation in autism. International Journal of Developmental Neuroscience, 24 (8). p. 474. ISSN 0736-5748

Sengupta, A. M., Mitra, P. P. (December 2006) Capacity of multivariate channels with multiplicative noise: Random matrix techniques and large-N expansions (2). Journal of Statistical Physics, 125 (5-6). pp. 1227-1246. ISSN 0022-4715

Sheth, N., Roca, X., Hastings, M. L., Roeder, T., Krainer, A. R., Sachidanandam, R. (2006) Comprehensive splice-site analysis using comparative genomics. Nucleic Acids Res, 34 (14). pp. 3955-3967. ISSN 1362-4962 (Electronic)

Sheu, Y. J., Stillman, B. (October 2006) Cdc7-Dbf4 phosphorylates MCM proteins via a docking site-mediated mechanism to promote S phase progression. Mol Cell, 24 (1). pp. 101-13. ISSN 1097-2765 (Print)

Siepel, Adam, Pollard, Katherine, Haussler, David (2006) New Methods for Detecting Lineage-Specific Selection. In: Research in Computational Molecular Biology. Lecture Notes in Computer Science, 3909 . Springer Berlin Heidelberg, pp. 190-205. ISBN 978-3-540-33295-4

Sivertsen, E. A., Galteland, E., Mu, D., Holte, H., Meza-Zepeda, L., Myklebost, O., Patzke, S., Smeland, E. B., Stokke, T. (January 2006) Gain of chromosome 6p is an infrequent cause of increased PIM1 expression in B-cell non-Hodgkin's lymphomas. Leukemia, 20 (3). pp. 539-542. ISSN 08876924

Smith, A. D., Sumazin, P., Xuan, Z., Zhang, M. Q. (April 2006) DNA motifs in human and mouse proximal promoters predict tissue-specific expression. Proc Natl Acad Sci U S A, 103 (16). pp. 6275-80. ISSN 0027-8424 (Print)

Smith, P. J., Zhang, C., Wang, J., Chew, S. L., Zhang, M. Q., Krainer, A. R. (August 2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet, 15 (16). pp. 2490-508. ISSN 0964-6906 (Print)

Smolen, G. A., Sordella, R., Muir, B., Mohapatra, G., Barmettler, A., Archibald, H., Kim, W. J., Okimoto, R. A., Bell, D. W., Sgroi, D. C., Christensen, J. G., Settleman, J., Haber, D. A. (February 2006) Amplification of MET may identify a subset of cancers with extreme sensitivity to the selective tyrosine kinase inhibitor PHA-665752. Proceedings of the National Academy of Sciences of the United States of America, 103 (7). pp. 2316-21. ISSN 0027-8424

Soengas, M. S., Gerald, W. L., Cordon-Cardo, C., Lazebnik, Y., Lowe, S. W. (2006) Apaf-1 expression in malignant melanoma. Cell Death and Differentiation, 13 (2). pp. 352-353. ISSN 13509047

Song, J. J., Joshua-Tor, L. (February 2006) Argonaute and RNA--getting into the groove. Curr Opin Struct Biol, 16 (1). pp. 5-11. ISSN 0959-440X (Print)

Sordella, R., Van Aelst, L. (2006) Driving Actin Dynamics under the Influence of Alcohol. Cell, 127 (1). pp. 37-39. ISSN 00928674

Spector, D. L. (December 2006) SnapShot: Cellular Bodies. Cell, 127 (5). p. 1070.

Spector, D. L., Godlman, R. D. (2006) Basic methods in microscopy : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.. ISBN 0879697474

Spector, D. L., Goldman, R. D. (2006) Constructing and Expressing GFP Fusion Proteins. Cold Spring Harbor Protocols, 2006 (7). ISSN 1940-3402 (Print) 1559-6095 (Electronic)

Stillman, B., Stewart, D. (2006) Regulatory RNAs. Cold Spring Harb Symp Quant Biol, 71. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

Stillman, Bruce (2006) Annual Report. Project Report. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

Sugino, K., Hempel, C. M., Miller, M. N., Hattox, A. M., Shapiro, P., Wu, C., Huang, Z. J., Nelson, S. B. (2006) Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nature Neuroscience, 9 (1). pp. 99-107. ISSN 10976256

Suzuki, H., Zuo, Y., Wang, J., Zhang, M. Q., Malhotra, A., Mayeda, A. (2006) Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing. Nucleic Acids Research, 34 (8). ISSN 03051048

Svoboda, K., Yasuda, R. (June 2006) Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron, 50 (6). pp. 823-39. ISSN 0896-6273 (Print)

T

Tolia, N.H., Joshua-Tor, L. (January 2006) Strategies for protein coexpression in Escherichia coli. Nat Methods, 3 (1). pp. 55-64. ISSN 1548-7091 (Print)

Tonks, N. K. (November 2006) Protein tyrosine phosphatases: from genes, to function, to disease. Nat Rev Mol Cell Biol, 7 (11). pp. 833-46. ISSN 1471-0072 (Print)

Tost, H., Meyer-Lindenberg, A., Klein, S., Schmitt, A., Hohn, F., Tenckhoff, A., Ruf, M., Ende, G., Rietschel, M., Henn, F. A., Braus, D. F. (December 2006) D2 antidopaminergic modulation of frontal lobe function in healthy human subjects. Biol Psychiatry, 60 (11). pp. 1196-205. ISSN 0006-3223 (Print)0006-3223 (Linking)

Trimborn, M., Schindler, D., Neitzel, H., Hirano, T. (2006) Misregulated chromosome condensation in MCPH1 primary microcephaly is mediated by condensin II. Cell Cycle, 5 (3). pp. 322-326. ISSN 15384101

Tropp Sneider, J., Chrobak, J. J., Quirk, M. C., Oler, J. A., Markus, E. J. (2006) Differential behavioral state-dependence in the burst properties of CA3 and CA1 neurons. Neuroscience, 141 (4). pp. 1665-1677. ISSN 03064522

Trotman, L. C., Alimonti, A., Scaglioni, P. P., Koutcher, J. A., Cordon-Cardo, C., Pandolfi, P. P. (May 2006) Identification of a tumour suppressor network opposing nuclear Akt function. Nature, 441 (7092). pp. 523-527. ISSN 00280836 (ISSN)

Tsigankov, D. N., Koulakov, A. A. (August 2006) A unifying model for activity-dependent and activity-independent mechanisms predicts complete structure of topographic maps in ephrin-A deficient mice. J Comput Neurosci, 21 (1). pp. 101-14. ISSN 0929-5313 (Print)

U

Uchida, N., Kepecs, A., Mainen, Z. F. (June 2006) Seeing at a glance, smelling in a whiff: rapid forms of perceptual decision making. Nature Reviews Neuroscience, 7 (6). pp. 485-91. ISSN 1471-0048

V

Vakoc, C. R., Sachdeva, M. M., Wang, H., Blobel, G. A. (2006) Profile of histone lysine methylation across transcribed mammalian chromatin. Molecular and Cellular Biology, 26 (24). pp. 9185-9195. ISSN 02707306 (ISSN)

Valencia-Sanchez, M. A., Liu, J., Hannon, G. J., Parker, R. (2006) Control of translation and mRNA degradation by miRNAs and siRNAs. Genes and Development, 20 (5). pp. 515-524. ISSN 08909369

Van Keuren-Jensen, K., Cline, H. T. (2006) Visual experience regulates metabotropic glutamate receptor-mediated plasticity of AMPA receptor synaptic transmission by Homer1a induction. Journal of Neuroscience, 26 (29). pp. 7575-7580. ISSN 02706474

Varshney, L. R., Sjöström, P. J., Chklovskii, D. B. (2006) Optimal Information Storage in Noisy Synapses under Resource Constraints. Neuron, 52 (3). pp. 409-423. ISSN 08966273

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (March 2006) First passage time densities in non-Markovian models with subthreshold oscillations. Europhysics Letters, 73 (5). pp. 691-697. ISSN 0295-5075

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (March 2006) First passage time densities in resonate-and-fire models. Phys Rev E Stat Nonlin Soft Matter Phys, 73 (3 Pt 1). 031108. ISSN 1539-3755 (Print)1539-3755 (Linking)

Voigt, L. P., Hmidi, A., Pastores, S. M., Maki, R. G., Carlson, D. L., Bains, M. S., Halpern, N. A. (November 2006) Management dilemmas due to a paratracheal follicular dendritic cell tumor. Ann Thorac Surg, 82 (5). pp. 1898-900. ISSN 1552-6259 (Electronic)0003-4975 (Linking)

W

Wang, S. E., Narasanna, A., Perez-Torres, M., Xiang, B., Wu, F. Y., Yang, S., Carpenter, G., Gazdar, A. F., Muthuswamy, S. K., Arteaga, C. L. (2006) HER2 kinase domain mutation results in constitutive phosphorylation and activation of HER2 and EGFR and resistance to EGFR tyrosine kinase inhibitors. Cancer Cell, 10 (1). pp. 25-38. ISSN 15356108

Wang, Yalin, Zhong, Yi (July 2006) Imaging of learning & memory associated changes in the mushroom body within the adult brain of Drosophila. Journal of Neurogenetics, 20 (3-4). pp. 254-255. ISSN 0167-7063

Watabe-Uchida, M., Govek, E. E., Van Aelst, L. (October 2006) Regulators of Rho GTPases in neuronal development. J Neurosci, 26 (42). pp. 10633-5. ISSN 1529-2401 (Electronic)

Watabe-Uchida, M., John, K. A., Janas, J. A., Newey, S. E., Van Aelst, L. (September 2006) The Rac activator DOCK7 regulates neuronal polarity through local phosphorylation of stathmin/Op18. Neuron, 51 (6). pp. 727-39. ISSN 0896-6273 (Print)

Watson, J. D., Caudy, A. A., Myers, R. M., Witkowski, J. (2006) Recombinant DNA: Genes and Genomes -- a short course. W. H. Freeman & Co., New York. ISBN 9780716728665

Weimer, R. M. (2006) Preservation of C. elegans tissue via high-pressure freezing and freeze-substitution for ultrastructural analysis and immunocytochemistry. Methods Mol Biol, 351. pp. 203-21. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Wendel, H. G., Malina, A., Zhao, Z., Zender, L., Kogan, S. C., Cordon-Cardo, C., Pelletier, J., Lowe, S. W. (August 2006) Determinants of sensitivity and resistance to rapamycin-chemotherapy drug combinations in vivo. Cancer Res, 66 (15). pp. 7639-46. ISSN 0008-5472 (Print)

Wendel, Hans-Guido, de Stanchina, Elisa, Cepero, Enriqué, Ray, Sagarika, Emig, Michael, Fridman, Jordan S., Veach, Darren R., Bornmann, William G., Clarkson, Bayard, McCombie, W. Richard, Kogan, Scott C., Hochhaus, Andreas, Lowe, Scott W. (May 2006) Loss of p53 impedes the antileukemic response to BCR-ABL inhibition. Proceedings of the National Academy of Sciences of the United States of America, 103 (19). pp. 7444-9. ISSN 0027-8424

West, J., Healy, J., Wigler, M. H., Casey, W., Mishra, B. (January 2006) Validation of S. Pombe sequence assembly by microarray hybridization. J Comput Biol, 13 (1). pp. 1-20. ISSN 1066-5277 (Print)

Wilbrecht, L., Williams, H., Gangadhar, N., Nottebohm, F. (September 2006) High levels of new neuron addition persist when the sensitive period for song learning is experimentally prolonged. Journal of Neuroscience, 26 (36). pp. 9135-9141. ISSN 02706474

Willingham, A. T., Dike, S., Cheng, J., Manak, J. R., Bell, I., Cheung, E., Drenkow, J., Dumais, E., Duttagupta, R., Ganesh, M., Ghosh, S., Helt, G., Nix, D., Piccolboni, A., Sementchenko, V., Tammana, H., Kapranov, P., Gingeras, T. R. (2006) Transcriptional landscape of the human and fly genomes: Nonlinear and multifunctional modular model of transcriptomes. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 101-110. ISSN 00917451 (ISSN)

Willingham, A. T., Gingeras, T. R. (2006) TUF Love for "Junk" DNA. Cell, 125 (7). pp. 1215-1220. ISSN 00928674 (ISSN)

Wilson, R. I., Mainen, Z. F. (July 2006) Early events in olfactory processing. Annu Rev Neurosci, 29. pp. 163-201. ISSN 0147-006X (Print)

Witkowski, J. A. (August 2006) Should we make a fuss? Nature Biotechnology, 24 (8). p. 899. ISSN 1087-0156

Witkowski, J. A. (April 2006) The postgenomic era and complex disease. Pharmacogenomics, 7 (3). pp. 341-3. ISSN 1462-2416 (Print)

Womelsdorf, T., Fries, P., Mitra, P. P., Desimone, R. (2006) Gamma-band synchronization in visual cortex predicts speed of change detection. Nature, 439 (7077). pp. 733-736. ISSN 00280836

Woolcock, B., Kazianis, S., Lucito, R., Walter, R. B., Kallman, K. D., Morizot, D. C., Vielkind, J. R. (2006) Allele-specific marker generation and linkage mapping on the Xiphophorus sex chromosomes. Zebrafish, 3 (1). pp. 23-37. ISSN 15458547

Wu, C. P., Huang, H. L., Asl, M. N., He, J. W., Gillis, J., Skinner, F. K., Zhang, L. (2006) Spontaneous rhythmic field potentials of isolated mouse hippocampal-subicular-entorhinal cortices in vitro. Journal of Physiology, 576 (2). pp. 457-476. ISSN 00223751 (ISSN)

X

Xiang, B., Muthuswamy, S. K. (2006) Using three-dimensional acinar structures for molecular and cell biological assays. Methods Enzymol, 406. pp. 692-701. ISSN 0076-6879 (Print)

Y

Yang, A., Zhu, Z., Kapranov, P., McKeon, F., Church, G. M., Gingeras, T. R., Struhl, K. (2006) Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Molecular Cell, 24 (4). pp. 593-602. ISSN 10972765 (ISSN)

Yang, L. V., Wan, J., Ge, Y., Fu, Z., Kim, S. Y., Fujiwara, Y., Taub, J. W., Matherly, L. H., Eliason, J., Li, L. (2006) The GATA site-dependent hemogen promoter is transcriptionally regulated by GATA1 in hematopoietic and leukemia cells. Leukemia, 20 (3). pp. 417-425. ISSN 08876924

Yasuda, Ryohei, Harvey, Christopher D., Zhong, Haining, Sobczyk, Aleksander, Van Aelst, Linda, Svoboda, Karel (2006) Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature Neuroscience, 9 (2). pp. 283-291. ISSN 10976256

Yigit, E., Batista, P. J., Bei, Y., Pang, K. M., Chen, C. C. G., Tolia, N. H., Joshua-Tor, L., Mitani, S., Simard, M. J., Mello, C. C. (2006) Analysis of the C. elegans Argonaute Family Reveals that Distinct Argonautes Act Sequentially during RNAi. Cell, 127 (4). pp. 747-757. ISSN 00928674

Yin, Bin, Diers, M. D., Rathe, S. K., Lowe, S. W., Largaespada, D. A. (November 2006) Genetic mechanisms of cytarabine resistance in leukemia: cell culture and mouse transplantation models. ASH Annual Meeting Abstracts, 108 (11). p. 4374. ISSN 0006-4971

Yin, Bin, Kogan, Scott C., Dickins, Ross A., Lowe, Scott W., Largaespada, David A. (2006) Trp53 loss during in vitro selection contributes to acquired Ara-C resistance in acute myeloid leukemia. Experimental Hematology, 34 (5). pp. 631-641. ISSN 0301472X

Z

Zender, L., Spector, M. S., Xue, W., Flemming, P., Cordon-Cardo, C., Silke, J., Fan, S. T., Luk, J. M., Wigler, M. H., Hannon, G. J., Mu, D., Lucito, R., Powers, S., Lowe, S. W. (June 2006) Identification and validation of oncogenes in liver cancer using an integrative oncogenomic approach. Cell, 125 (7). pp. 1253-67. ISSN 0092-8674 (Print)

Zender, L., Xue, W., Cordon-Cardo, C., Lowe, S. W. (October 2006) P53 restoration in liver carcinomas induces cellular senescence and tumor clearance through an innate immune response. Hepatology, 44 (4). 694A-695A. ISSN 0270-9139

Zeng, P. Y., Vakoc, C. R., Chen, Z. C., Blobel, G. A., Berger, S. L. (2006) In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation. Biotechniques, 41 (6). pp. 694-698. ISSN 07366205 (ISSN)

Zhan, L., Xiang, B., Muthuswamy, S. K. (May 2006) Controlled activation of ErbB1/ErbB2 heterodimers promote invasion of three-dimensional organized epithelia in an ErbB1-dependent manner: implications for progression of ErbB2-overexpressing tumors. Cancer Res, 66 (10). pp. 5201-8. ISSN 0008-5472 (Print)

Zhang, C., Li, H. R., Fan, J. B., Wang-Rodriguez, J., Downs, T., Fu, X. D., Zhang, M. Q. (2006) Profiling alternatively spliced mRNA isoforms for prostate cancer classification. BMC Bioinformatics, 7. p. 202. ISSN 1471-2105 (Electronic)

Zhang, C., Lu, X., Zhang, X. (July 2006) Significance of gene ranking for classification of microarray samples. IEEE/ACM Trans Comput Biol Bioinform, 3 (3). pp. 312-20. ISSN 1545-5963 (Print)

Zhang, C., Xuan, Z., Otto, S., Hover, J. R., McCorkle, S. R., Mandel, G., Zhang, M. Q. (2006) A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome. Nucleic Acids Res, 34 (8). pp. 2238-46. ISSN 1362-4962 (Electronic)

Zhang, M., Drenkow, J., Lankford, C. S. R., Frucht, D. M., Rabin, R. L., Gingeras, T. R., Venkateshan, C., Schwartzkopff, F., Clouse, K. A., Dayton, A. I. (2006) HIV regulation of the IL-7R: A viral mechanism for enhancing HIV-1 replication in human macrophages in vitro. Journal of Leukocyte Biology, 79 (6). pp. 1328-1338. ISSN 07415400 (ISSN)

Zhang, Q. S. , Manche, L., Xu, R. M. , Krainer, A. R. (June 2006) hnRNP A1 associates with telomere ends and stimulates telomerase activity. RNA, 12 (6). pp. 1116-28. ISSN 1355-8382 (Print)

Zhang, Z., Krainer, A. R. (2006) Nonsense-Mediated Alternative Splicing. In: Nonsense-mediated mRNA decay. Landes Bioscience, Georgetown, TX, pp. 250-359. ISBN 9781587062964

Zhao, M., Janas, J. A. , Niki, M., Pandolfi, P. P., Van Aelst, L. (April 2006) Dok-1 independently attenuates Ras/mitogen-activated protein kinase and Src/c-myc pathways to inhibit platelet-derived growth factor-induced mitogenesis. Mol Cell Biol, 26 (7). pp. 2479-89. ISSN 0270-7306 (Print)

Zhao, W., Canaran, P., Jurkuta, R., Fulton, T., Glaubitz, J., Buckler, E., Doebley, J., Gaut, B., Goodman, M., Holland, J., Kresovich, S., McMullen, M., Stein, L. D., Ware, D. (January 2006) Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res, 34 (Databa). D752-7. ISSN 1362-4962 (Electronic)

Zhong, J., Zhang, T., Bloch, L. M. (February 2006) Dendritic mRNAs encode diversified functionalities in hippocampal pyramidal neurons. BMC Neuroscience, 7. p. 17. ISSN 14712202

Zhu, X., Zhang, J., Tollkuhn, J., Ohsawa, R., Bresnick, E. H., Guillemot, F., Kageyama, R., Rosenfeld, M. G. (October 2006) Sustained Notch signaling in progenitors is required for sequential emergence of distinct cell lineages during organogenesis. Genes Dev, 20 (19). pp. 2739-53. ISSN 0890-9369 (Print)0890-9369 (Linking)

This list was generated on Sun Jan 20 04:19:36 2019 EST.
CSHL HomeAbout CSHLResearchEducationNews & FeaturesCampus & Public EventsCareersGiving