Items where Subject is "brain"
- CSHL Subject List (260)
- organs, tissues, organelles, cell types and functions (260)
- organs types and functions (260)
- brain (260)
- organs types and functions (260)
- organs, tissues, organelles, cell types and functions (260)
A
Abramson, Harold Alexander (1956) Lysergic acid diethylamide (LSD-25) XXII. Effect on transference. Journal of Psychology: Interdisciplinary and Applied, 42. pp. 51-98.
Abramson, Harold Alexander, Kornetsky, C., Jarvik, Murray E., Kaufman, M. R, Ferguson, M. W. (1955) Lysergic acid diethylamide (LSD-25): XI. Content analysis of clinical reactions. Journal of Psychology: Interdisciplinary and Applied, 40. pp. 53-60.
Abramson, Harold Alexander, Sklarofsky, Bernard, Baron, Myrna O., Fremont-Smith, Nicholas (1958) Lysergic acid diethylamide (LSD-25) Antagonists II. Development of tolerance in man to LSD-25 by prior administration of MLD-41 (1-methyl-d-lysergic acid diethylamide). Archives of Neurology and Psychiatry, 79. pp. 201-207.
Abramson, Harold Alexander, Sklarofsky, Bernard, Baron, Myrna O., Gettner, H. H. (1957) Blocking effect of brain extract on lysergic acid diethylamide reaction in Siamese fighting fish. Science, 125 (3244). pp. 397-398.
Adams, B., Golding, S., Biddlestone-Thorpe, L., Beckta, J., Saleh, H., Enikopolov, G., Valerie, K. (2011) In Vivo and In Vitro Human Brain Tumor Models for Improving the Therapeutic Ratio of Ionizing Radiation and DNA Repair Inhibitors. International Journal of Radiation Oncology Biology Physics, 81 (S2). S741-S742. ISSN 0360-3016
Alia-Klein, N., Goldstein, R. Z., Kriplani, A., Logan, J., Tomasi, D., Williams, B., Telang, F., Shumay, E., Biegon, A., Craig, I. W., Henn, F., Wang, G. J., Volkow, N. D., Fowler, J. S. (May 2008) Brain monoamine oxidase A activity predicts trait aggression. J Neurosci, 28 (19). pp. 5099-104. ISSN 1529-2401 (Electronic)0270-6474 (Linking)
Anne, S. L., Govek, E. E., Ayrault, O., Kim, J. H., Zhu, X., Murphy, D. A., Van Aelst, L., Roussel, M. F., Hatten, M. E. (2013) WNT3 inhibits cerebellar granule neuron progenitor proliferation and medulloblastoma formation via MAPK activation. PLoS ONE, 8 (11). ISSN 19326203 (ISSN)
Anselmi, Francesca, Banerjee, Arkarup, Albeanu, Dinu F. (2015) Patterned Photostimulation in the Brain. In: New Techniques in Systems Neuroscience. Springer International Publishing, Cham, pp. 235-270. ISBN 978-3-319-12913-6
Anttila, V., Bulik-Sullivan, B., Finucane, H. K., Walters, R. K., Bras, J., Duncan, L., Escott-Price, V., Falcone, G. J., Gormley, P., Malik, R., Patsopoulos, N. A., Ripke, S., Wei, Z., Yu, D., Lee, P. H., Turley, P., Grenier-Boley, B., Chouraki, V., Kamatani, Y., Berr, C., Letenneur, L., Hannequin, D., Amouyel, P., Boland, A., Deleuze, J. F., Duron, E., Vardarajan, B. N., Reitz, C., Goate, A. M., Huentelman, M. J., Kamboh, M. I., Larson, E. B., Rogaeva, E., St George-Hyslop, P., Hakonarson, H., Kukull, W. A., Farrer, L. A., Barnes, L. L., Beach, T. G., Demirci, F. Y., Head, E., Hulette, C. M., Jicha, G. A., Kauwe, J. S. K., Kaye, J. A., Leverenz, J. B., Levey, A. I., Lieberman, A. P., Pankratz, V. S., Poon, W. W., Quinn, J. F., Saykin, A. J., Schneider, L. S., Smith, A. G., Sonnen, J. A., Stern, R. A., Van Deerlin, V. M., Van Eldik, L. J., Harold, D., Russo, G., Rubinsztein, D. C., Bayer, A., Tsolaki, M., Proitsi, P., Fox, N. C., Hampel, H., Owen, M. J., Mead, S., Passmore, P., Morgan, K., Nothen, M. M., Rossor, M., Lupton, M. K., Hoffmann, P., Kornhuber, J., Lawlor, B., McQuillin, A., Al-Chalabi, A., Bis, J. C., Ruiz, A., Boada, M., Seshadri, S., Beiser, A., Rice, K., van der Lee, S. J., De Jager, P. L., Geschwind, D. H., Riemenschneider, M., Riedel-Heller, S., Rotter, J. I., Ransmayr, G., Hyman, B. T., Cruchaga, C., Alegret, M., Winsvold, B., Palta, P., Farh, K. H., Cuenca-Leon, E., Furlotte, N., Kurth, T. (June 2018) Analysis of shared heritability in common disorders of the brain. Science, 360 (6395). ISSN 0036-8075
Ascoli, GA, Huo, BX, Mitra, PP (January 2022) Sizing up whole-brain neuronal tracing. Science Bulletin. ISSN 2095-9273
Atwal, G. S. (December 2004) Dynamic plasticity in coupled avian midbrain maps. Phys Rev E Stat Nonlin Soft Matter Phys, 70 (6 Pt 1). 061904. ISSN 1539-3755 (Print)1539-3755 (Linking)
Auguste, Yohan SS, Ferro, Austin, Kahng, Jessica A, Xavier, Andre M, Dixon, Jessica R, Vrudhula, Uma, Nichitiu, Anne-Sarah, Rosado, Daniele, Wee, Tse-Luen, Pedmale, Ullas V, Cheadle, Lucas (September 2022) Oligodendrocyte precursor cells engulf synapses during circuit remodeling in mice. Nature Neuroscience. ISSN 1097-6256
B
BICCN Data Ecosystem Collaboration, Hawrylycz, Michael, Martone, Maryann, Hof, Patrick, Lein, Ed, Regev, Aviv, Ascoli, Giorgio, Bjaalie, Jan, Dong, Hong-Wei, Ghosh, Satrajit, Gillis, Jesse, Hertzano, Ronna, Haynor, David, Kim, Yongsoo, Liu, Yufeng, Miller, Jeremy, Mitra, Partha, Mukamel, Eran, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick, Sanchez, Raymond, Ropelewski, Alex, Scheuermann, Richard, Tan, Shawn, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas, Baker, Pamela, Baker, Cody, Baker, Katherine, Bandrowski, Anita, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy, Gee, James, Gillespie, Tom, Gouwens, Nathan, Halchenko, Yaroslav, Harris, Nomi, Herb, Brian, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Markuhar, Anup, Mathews, James, Mathews, Kaylee, Miller, Michael, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher, Ng, Lydia, Orvis, Joshua, Puchades, Maja, Qu, Lei, Receveur, Joseph, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Thompson, Carol, Tward, Daniel, van Velthoven, Cindy, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zeng, Hongkui, Zhang, Guo-Qiang, Zhang, Yun, Zheng, Jim, Zingg, Brian (2022) The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide. bioRxiv. (Submitted)
Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474
Bargmann, C., Callaway, E., Chklovskii, D. (March 2010) NEURONAL CIRCUITS. In: 2010 Meeting of Neuronal Circuits, March 10–March 13, 2010, Cold Spring Harbor Laboratory.
Bast, Walter Germán, Albeanu, Dinu F (March 2022) Mapping odorant receptors to their glomeruli. Nature Neuroscience. ISSN 1097-6256
Bennett, C. F., Krainer, A. R., Cleveland, D. W. (July 2019) Antisense Oligonucleotide Therapies for Neurodegenerative Diseases. Annu Rev Neurosci, 42. pp. 385-406. ISSN 0147-006x
Bennett, Lori, Yang, Ming, Enikolopov, G. N., Iacovitti, Lorraine (June 2009) Circumventricular organs: A novel site of neural stem cells in the adult brain. Molecular and Cellular Neuroscience, 41 (3). pp. 337-347.
Beshel, J., Zhong, Y. (September 2015) Alterations in Brain-derived Leptin-homolog Unpaired 1 Lead to Obesity Phenotypes in Drosophila through Regulation of Food Odor Value Signaling. Chemical Senses, 40 (7). pp. 549-550. ISSN 0379-864X
Beshel, J., Zhong, Y. (October 2013) Graded Encoding of Food Odor Value in the Drosophila Brain. Journal of Neuroscience, 33 (40). pp. 15693-15704. ISSN 0270-6474
Blakeslee, Albert Francis (July 1935) Demonstration of differences between people in the sense of smell. The Scientific Monthly, 41 (1). pp. 72-84.
Blakeslee, Albert Francis (May 1935) A dinner demonstration of threshold differences in taste and smell. Science, 81 (2108). pp. 504-507.
Blakeslee, Albert Francis, Salmon, Theodora Nussman (February 1935) Genetics of sensory thresholds: Individual taste reactions for different substances. Proceedings of the National Academy of Sciences, 21 (2). pp. 84-90.
Bohland, J. W., Bokil, H., Allen, C. B., Mitra, P. P. (September 2009) The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PLoS ONE, 4 (9). e7200. ISSN 1932-6203 (Electronic)
Bokil, H., Pesaran, B., Andersen, R. A., Mitra, P. P. (2005) A framework for detection and classification of events in neural activity. arXiv.
Bokil, H. S., Mitra, P. P. (2007) Non-parametric methods for the analysis of neurobiological time-series data. 46th IEEE Conference on Decision and Control, 2007. pp. 5833-5838.
Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791
Borniger, J. C., Ungerleider, K., Zhang, N., Karelina, K., Magalang, U. J., Weil, Z. M. (April 2018) Repetitive Brain Injury of Juvenile Mice Impairs Environmental Enrichment-Induced Modulation of REM Sleep in Adulthood. Neuroscience, 375. pp. 74-83. ISSN 1873-7544 (Electronic)0306-4522 (Linking)
Brauth, S. E., Heaton, J. T., Shea, S. D., Durand, S. E., Hall, W. S. (January 1997) Functional anatomy of forebrain vocal control pathways in the budgerigar (Melopsittacus undulatus). Annals of the New York Academy of Sciences, 807. pp. 368-85. ISSN 0077-8923 (Print)0077-8923
Brody, C. D., Romo, R., Kepecs, A. (2003) Basic mechanisms for graded persistent activity: Discrete attractors, continuous attractors, and dynamic representations. Current Opinion in Neurobiology, 13 (2). pp. 204-211. ISSN 09594388 (ISSN)
Brown, P., Cervenáková, L., Goldfarb, L. G., McCombie, W. R., Rubenstein, R., Will, R. G., Pocchiari, M., Martinez-Lage, J. F., Scalici, C., Masullo, C., Graupera, G., Ligan, J., Gajdusek, D. C. (1994) Iatrogenic Creutzfeldt-Jakob disease: An example of the interplay between ancient genes and modern medicine. Neurology, 44 (2). pp. 291-293. ISSN 00283878 (ISSN)
C
Cetin, A., Komai, S., Eliava, M., Seeburg, P. H., Osten, P. (2006) Stereotaxic gene delivery in the rodent brain. Nature Protocols, 1 (6). ISSN 17542189 (ISSN)
Chandrasekhar, A., Navlakha, S. (May 2019) Neural arbors are Pareto optimal. Proc Biol Sci, 286 (1902). p. 20182727. ISSN 0962-8452 (Public Dataset)
Chen, B., Trachtenberg, J.T., Holtmaat, A. J., Svoboda, K. (2005) Long-term, high-resolution imaging in the neocortex in vivo. In: Live cell imaging: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 423-424. ISBN 0879696826
Chen, B. L., Chklovskii, D. B. (April 2006) Placement and routing optimization in the brain. Proceedings of the 2006 international symposium on Physical design, 2006. pp. 136-141.
Chen, Y., McElvain, L. E., Tolpygo, A. S., Ferrante, D., Friedman, B., Mitra, P. P., Karten, H. J., Freund, Y., Kleinfeld, D. (March 2019) An active texture-based digital atlas enables automated mapping of structures and markers across brains. Nat Methods, 16 (4). pp. 341-350. ISSN 1548-7091
Chiu, S. L., Cline, H. T. (2010) Insulin receptor signaling in the development of neuronal structure and function. Neural Dev, 5. p. 7. ISSN 1749-8104
Chklovskii, D. B. (October 2004) Exact solution for the optimal neuronal layout problem. Neural Comput, 16 (10). pp. 2067-78. ISSN 0899-7667 (Print)
Chklovskii, D. B., Stevens, C. F. (2000) Wiring Optimization in the Brain. In: Advances in neural information processing systems 12 : proceedings of the 1999 conference. MIT Press, Cambridge, Mass., pp. 103-107. ISBN 0262194503
Chourbaji, S., Hellweg, R., Brandis, D., Zorner, B., Zacher, C., Lang, U. E., Henn, F. A., Hortnagl, H., Gass, P. (February 2004) Mice with reduced brain-derived neurotrophic factor expression show decreased choline acetyltransferase activity, but regular brain monoamine levels and unaltered emotional behavior. Brain Res Mol Brain Res, 121 (1-2). pp. 28-36. ISSN 0169-328X (Print)0169-328X (Linking)
Churchland, Anne, Lisberger, Stephen (June 2015) Contributions from different model organisms to brain research. Neuroscience, 296. pp. 1-2. ISSN 0306-4522
Ciceri, G., Dehorter, N., Sols, I., Huang, Z. J., Maravall, M., Marín, O. (August 2013) Lineage-specific laminar organization of cortical GABAergic interneurons. Nature Neuroscience, 16 (9). pp. 1199-1210. ISSN 10976256
Clark, D. A., Mitra, P. P., Wang, S. S. H. (2001) Scalable architecture in mammalian brains. Nature, 411 (6834). pp. 189-193. ISSN 00280836 (ISSN)
Cline, H. (December 2003) Sperry and Hebb: oil and vinegar? Trends in Neurosciences, 26 (12). pp. 655-661. ISSN 0166-2236
Cline, H. T. (November 1998) Topographic maps: developing roles of synaptic plasticity. Current Biology, 8 (23). R836-9. ISSN 0960-9822
Cline, H. T., McDonald, J. W., Constantine-Paton, M. (May 1994) Glutamate receptor binding in juvenile and adult Rana pipiens CNS. J Neurobiol, 25 (5). pp. 488-502.
Constantine-Paton, M., Cline, H. T. (February 1998) LTP and activity-dependent synaptogenesis: the more alike they are, the more different they become. Current Opinion in Neurobiology, 8 (1). pp. 139-48. ISSN 0959-4388
Corlett, P. R., Horga, G., Fletcher, P. C., Alderson-Day, B., Schmack, K., Powers, A. R. (December 2018) Hallucinations and Strong Priors. Trends in Cognitive Sciences, 23 (2). pp. 114-127. ISSN 13646613
Croll, S. D., Wiegand, S. J., Anderson, K. D., Lindsay, R. M., Nawa, H. (August 1994) Regulation of Neuropeptides in Adult-Rat Forebrain by the Neurotrophins Bdnf and Ngf. European Journal of Neuroscience, 6 (8). pp. 1343-1353. ISSN 0953-816X
Crow, M., Paul, A., Ballouz, S., Huang, Z. J., Gillis, J. (May 2016) Exploiting single-cell expression to characterize co-expression replicability. Genome Biol, 17 (1). p. 101. ISSN 1474-760X (Electronic)1474-7596 (Linking) (Public Dataset)
D
Dachet, Fabien, Brown, James B, Valyi-Nagy, Tibor, Narayan, Kunwar D, Serafini, Anna, Boley, Nathan, Gingeras, Thomas R, Celniker, Susan E, Mohapatra, Gayatry, Loeb, Jeffrey A (March 2021) Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports, 11 (1). p. 6078. ISSN 2045-2322
Davenport, Charles Benedict (July 1940) Post-natal development of the head. Proceedings of the American Philosophical Society, 83 (1). 1-215, with 5 plates.
Davenport, Charles Benedict (September 1943) The development of the head. American Journal of Orthodontics and Oral Surgery, 29 (9). pp. 541-547.
De Pietri Tonelli, D., Pulvers, J. N., Haffner, C., Murchison, E. P., Hannon, G. J., Huttner, W. B. (2008) miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex. Development, 135 (23). pp. 3911-3921. ISSN 09501991 (ISSN)
De Swiet, T. M., Mitra, P. P. (1996) Possible systematic errors in single-shot measurements of the trace of the diffusion tensor. Journal of Magnetic Resonance - Series B, 111 (1). pp. 15-22. ISSN 10641866 (ISSN)
DeLisi, L. E., Hoff, A. L., Schwartz, J. E., Shields, G. W., Halthore, S. N., Gupta, S. M., Henn, F. A., Anand, A. K. (January 1991) Brain morphology in first-episode schizophrenic-like psychotic patients: a quantitative magnetic resonance imaging study. Biological Psychiatry, 29 (2). pp. 159-75. ISSN 0006-3223
Diaz-Nido, J., Mizuno, K., Nawa, H., Marshak, D. R. (1994) Regulation of protein kinase CK2 isoform expression during rat brain development. Cell Mol Biol Res, 40 (5-6). pp. 581-5. ISSN 0968-8773 (Print)
Dilmanian, F. A., Qu, Y., Feinendegen, L. E., Pena, L. A., Bacarian, T., Henn, F. A., Kalef-Ezra, J., Liu, S., Zhong, Z., McDonald, J. W. (April 2007) Tissue-sparing effect of x-ray microplanar beams particularly in the CNS: is a bystander effect involved? Experimental Hematology, 35 (4 Supp). pp. 69-77. ISSN 0301472X
Dong, Ao, He, Kaikai, Dudok, Barna, Farrell, Jordan S, Guan, Wuqiang, Liput, Daniel J, Puhl, Henry L, Cai, Ruyi, Wang, Huan, Duan, Jiali, Albarran, Eddy, Ding, Jun, Lovinger, David M, Li, Bo, Soltesz, Ivan, Li, Yulong (November 2021) A fluorescent sensor for spatiotemporally resolved imaging of endocannabinoid dynamics in vivo. Nature Biotechnology. ISSN 1087-0156
Draetta, G., Klee, C. B. (1988) Purification of Calmodulin-Stimulated Phosphodiesterase by Affinity-Chromatography on Calmodulin Fragment-1-77 Linked to Sepharose. Methods in Enzymology, 159. pp. 573-581. ISSN 0076-6879
Dubnau, J. T. (November 2012) Talk from Josh Dubnau at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)
de Ruiter Swain, Jed, Michalopoulou, Evdokia, Noch, Evan K, Lukey, Michael J, Van Aelst, Linda (August 2023) Metabolic partitioning in the brain and its hijacking by glioblastoma. Genes and Development, 37. pp. 681-702. ISSN 0890-9369
E
Ellegood, J., Anagnostou, E., Babineau, B. A., Crawley, J. N., Lin, L., Genestine, M., DiCicco-Bloom, E., Lai, J. K., Foster, J. A., Penagarikano, O., Geschwind, D. H., Pacey, L. K., Hampson, D. R., Laliberte, C. L., Mills, A. A., Tam, E., Osborne, L. R., Kouser, M., Espinosa-Becerra, F., Xuan, Z., Powell, C. M., Raznahan, A., Robins, D. M., Nakai, N., Nakatani, J., Takumi, T., van Eede, M. C., Kerr, T. M., Muller, C., Blakely, R. D., Veenstra-VanderWeele, J., Henkelman, R. M., Lerch, J. P. (February 2015) Clustering autism: using neuroanatomical differences in 26 mouse models to gain insight into the heterogeneity. Mol Psychiatry, 20 (1). pp. 118-125. ISSN 1359-4184
Encinas, J. M., Enikolopov, G. (2008) Identifying and quantitating neural stem and progenitor cells in the adult brain. Methods Cell Biol, 85. pp. 243-72. ISSN 0091-679X (Print) (Unpublished)
Ende, G., Braus, D. F., Walter, S., Weber-Fahr, W., Soher, B., Maudsley, A. A., Henn, F. A. (February 2000) Effects of age, medication, and illness duration on the N-acetyl aspartate signal of the anterior cingulate region in schizophrenia. Schizophr Res, 41 (3). pp. 389-95. ISSN 0920-9964 (Print)
Enikolopov, G., Guillermier, C., Wang, M., Trakimas, L., Steinhauser, M. L., Lechene, C. (November 2014) Brain stem cell division and maintenance studied using multi-isotope imaging mass spectrometry (MIMS). Surface and Interface Analysis, 46 (S1). pp. 140-143. ISSN 01422421
F
Fang, F., Fan, S., Zhang, X., Zhang, M. Q. (2006) Predicting methylation status of CpG islands in the human brain. Bioinformatics, 22 (18). pp. 2204-2209. ISSN 13674803
Ferraro, Emanuela, Singh, Jasmeet, Patil, Sujata, Razavi, Pedram, Modi, Shanu, Chandarlapaty, Sarat, Barrio, Andrea V, Malani, Rachna, Mellinghoff, Ingo K, Boire, Adrienne, Wen, Hannah Y, Brogi, Edi, Seidman, Andrew D, Norton, Larry, Robson, Mark E, Dang, Chau T (March 2022) Incidence of brain metastases in patients with early HER2-positive breast cancer receiving neoadjuvant chemotherapy with trastuzumab and pertuzumab. npj Breast Cancer, 8 (1). p. 37. ISSN 2374-4677
Fillit, H. M., Butler, R. N., O'Connell, A. W., Albert, M. S., Birren, J. E., Cotman, C. W., Greenough, W. T., Gold, P. E., Kramer, A. F., Kuller, L. H., Perls, T. T., Sahagan, B. G., Tully, T. (July 2002) Achieving and maintaining cognitive vitality with aging. Mayo Clinic Proceedings, 77 (7). pp. 681-696. ISSN 0025-6196
Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)
Fischer, Kyle B, Collins, Hannah K, Pang, Yan, Roy, Dheeraj S, Zhang, Ying, Feng, Guoping, Li, Shu-Jing, Kepecs, Adam, Callaway, Edward M (2022) Monosynaptic restriction of the anterograde herpes simplex virus strain H129 for neural circuit tracing. Journal of Comparative Neurology. ISSN 0021-9967
Fischer, Stephan, Crow, Megan, Harris, Benjamin D, Gillis, Jesse (July 2021) Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor. Nature Protocols. ISSN 1754-2189
G
Gal, E. M., Henn, F. A., Sherman, A. (August 1978) Biopterin: IV. Regional and subcellular aspects of L-erythro-7,8-dihydrobiopterin synthesis in brain. Neurochemical research, 3 (4). pp. 493-9. ISSN 0364-3190 (Print)0364-3190
Gampe, K., Stefani, J., Hammer, K., Brendel, P., Potzsch, A., Enikolopov, G., Enjyoji, K., Acker-Palmer, A., Robson, S. C., Zimmermann, H. (January 2015) NTPDase2 and Purinergic Signaling Control Progenitor Cell Proliferation in Neurogenic Niches of the Adult Mouse Brain. Stem Cells, 33 (1). pp. 253-64. ISSN 1066-5099
Gao, X., Enikolopov, G. N., Chen, J. (October 2009) Moderate traumatic brain injury promotes proliferation of quiescent neural progenitors in the adult hippocampus. Experimental Neurology, 219 (2). pp. 516-523.
Gao, Z., Zhang, T., Wu, M., Xiong, Q., Sun, H., Zhang, Y., Zu, L., Wang, W., Li, M. (June 2010) Isoform-specific prolongation of Kv7 (KCNQ) potassium channel opening mediated by new molecular determinants for drug-channel interactions. Journal of Biological Chemistry, 285 (36). pp. 28322-28332.
Gegenhuber, B., Tollkuhn, J. (June 2019) Sex Differences in the Epigenome: A Cause or Consequence of Sexual Differentiation of the Brain? Genes (Basel), 10 (6). E432. ISSN 2073-4425 (Print)2073-4425
Gegenhuber, Bruno, Tollkuhn, Jessica (July 2022) Epigenetic Mechanisms of Brain Sexual Differentiation. Cold Spring Harbor Perspectives in Biology. a039099. ISSN 1943-0264
Geronimus, Lippman H., Abramson, Harold Alexander, Ingraham, Laura J. (1956) Lysergic acid diethylamide (LSD-25) XXIII. Comparative effects of LSD-25 and related ergot drugs on brain tissue respiration and on human behavior. Journal of Psychology: Interdisciplinary and Applied, 42. pp. 157-168.
Giber, K., Diana, M. A., V, M. Plattner, Dugue, G. P., Bokor, H., Rousseau, C. V., Magloczky, Z., Havas, L., Hangya, B., Wildner, H., Zeilhofer, H. U., Dieudonne, S., Acsady, L. (February 2015) A subcortical inhibitory signal for behavioral arrest in the thalamus. Nature Neuroscience, 18. pp. 562-568. ISSN 1097-6256
Goldfarb, L. G., Brown, P., Rubenstein, R., McCombie, W. R., Cervenakova, L., Graupera, G., Ligan, J., Sulima, M., Gibbs, C. J., Gajdusek, D. C. (August 1992) Genetic-characteristics of infectious forms of the transmissible spongiform encephalopathies. Annals of neurology, 32 (2). p. 233. ISSN 0364-5134
Govek, E. E., Hatten, M. E., Van Aelst, L. (June 2011) The role of Rho GTPase proteins in CNS neuronal migration. Developmental Neurobiology, 71 (6). pp. 528-553. ISSN 19328451 (ISSN)
Grange, Pascal, Mitra, Partha P (May 2011) Marker Genes for Anatomical Regions in the Brain: Insights from the Allen Gene Expression Atlas. (Submitted)
Grange, Pascal, Mitra, Partha P (November 2011) Statistical analysis of co-expression properties of sets of genes in the mouse brain. (Submitted)
Grange, P., Bohland, J. W., Hawrylycz, M., Mitra, P. P. (November 2012) Brain Gene Expression Analysis: a MATLAB toolbox for the analysis of brain-wide gene-expression data. arXiv. (Unpublished)
Grange, P., Mitra, Partha P. (March 2012) Computational neuroanatomy and gene expression: Optimal sets of marker genes for brain regions. 46th Annual Conference on Information Sciences and Systems (CISS).
Grange, P., Bohland, J. W., Okaty, B. W., Sugino, K., Bokil, H., Nelson, S. B., Ng, L., Hawrylycz, M., Mitra, P. P. (April 2014) Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5397-5402. ISSN 0027-8424
Griffin, A., Tolpygo, A., Parikh, G., Turtzo, C., Moses, A., Ray-Chaudhury, A., Dardzinksi, B., Mitra, P., Latour, L. (July 2016) MRI EVALUATION OF MICROBLEEDS MAY REVEAL ONLY THE TIP OF THE ICEBERG: A 3D HISTOLOGICAL ANALYSIS. Journal of Neurotrauma, 33 (13). A59-A59. ISSN 0897-7151
Griffin, A. D., Turtzo, L. C., Parikh, G. Y., Tolpygo, A., Lodato, Z., Moses, A. D., Nair, G., Perl, D. P., Edwards, N. A., Dardzinski, B. J., Armstrong, R. C., Ray-Chaudhury, A., Mitra, P. P., Latour, L. L. (October 2019) Traumatic microbleeds suggest vascular injury and predict disability in traumatic brain injury. Brain, 142 (11). pp. 3550-3564. ISSN 0006-8950
Grinevich, V., Kolleker, A., Eliava, M., Takada, N., Takuma, H., Fukazawa, Y., Shigemoto, R., Kuhl, D., Waters, J., Seeburg, P.H., Osten, P. (October 2009) Fluorescent Arc/Arg3.1 indicator mice: A versatile tool to study brain activity changes in vitro and in vivo. Journal of Neuroscience Methods, 184 (1). pp. 25-36.
Gruntman, Eyal (July 2012) Integration Properties of Kenyon Cells in the Drosophila melanogaster Mushroom Bodies. PhD thesis, Cold Spring Harbor Laboratory.
H
Haas, K., Jensen, K., Sin, W. C., Foa, L., Cline, H. T. (June 2002) Targeted electroporation in Xenopus tadpoles in vivo - from single cells to the entire brain. Differentiation, 70 (4-5). pp. 148-154. ISSN 0301-4681
Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W Jim, Zingg, Brian (June 2023) A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology, 21 (6). e3002133. ISSN 1544-9173
Helmstaedter, M., Mitra, P. P. (February 2012) Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology, 22 (1). pp. 162-169. ISSN 09594388 (ISSN)
Henn, F. A., Braus, D. F. (December 1999) Structural neuroimaging in schizophrenia. An integrative view of neuromorphology. European Archives of Psychiatry and Clinical Neuroscience, 249 Su. pp. 48-56. ISSN 0940-1334 (Print)0940-1334 (Linking)
Hesser, J., Manner, R., Braus, D. F., Ende, G., Henn, F. A. (June 1997) Real-time direct volume rendering in functional magnetic resonance imaging. Magnetic Resonance Materials in Physics, Biology and Medicine, 5 (2). pp. 87-91. ISSN 0968-5243 (Print)0968-5243 (Linking)
Hesser, J., Manner, R., Braus, D. F., Ende, G., Henn, F. A. (June 1997) Real-time direct volume rendering in functional magnetic resonance imaging. Magma, 5 (2). pp. 87-91. ISSN 0968-5243 (Print)0968-5243
Holtmaat, A., Bonhoeffer, T., Chow, D. K., Chuckowree, J., De Paola, V., Hofer, S. B., Hubener, M., Keck, T., Knott, G., Lee, W. C., Mostany, R., Mrsic-Flogel, T. D., Nedivi, E., Portera-Cailliau, C., Svoboda, K., Trachtenberg, J. T., Wilbrecht, L. (July 2009) Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat Protoc, 4 (8). pp. 1128-44. ISSN 1750-2799 (Electronic)
Holtmaat, A., De Paola, V., Wilbrecht, L., Knott, G. W. (September 2008) Imaging of experience-dependent structural plasticity in the mouse neocortex in vivo. Behav Brain Res, 192 (1). pp. 20-25.
Honegger, K. S., Campbell, R. A. A., Turner, G. C. (August 2011) Cellular-Resolution Population Imaging Reveals Robust Sparse Coding in the Drosophila Mushroom Body. Journal of Neuroscience, 31 (33). pp. 11772-11785. ISSN 0270-6474
Honegger, Kyle S. (March 2012) Neural coding in the Drosophila Mushroom Body. PhD thesis, Cold Spring Harbor Laboratory.
Hopfield, J. J., Brody, C. D. (February 2003) Separating objects and 'neural' computation. Comptes Rendus Biologies, 326 (2). pp. 219-222. ISSN 1631-0691
Huang, Z. J., Luo, L. (October 2015) NEUROSCIENCE. It takes the world to understand the brain. Science, 350 (6256). pp. 42-4. ISSN 1095-9203 (Electronic)0036-8075 (Linking)
Huang, Z. J., Taniguchi, H., He, M., Kuhlman, S. (February 2014) Genetic labeling of neurons in mouse brain. Cold Spring Harb Protoc, 2014 (2). pp. 150-60. ISSN 1559-6095 (Electronic)1559-6095 (Linking)
Huang, Z. J., Zeng, H. (July 2013) Genetic Approaches to Neural Circuits in the Mouse. Annual Review of Neuroscience, 36. ISSN 0147-006X
I
Iossifov, I., Rodriguez-Esteban, R., Mayzus, I., Millen, K. J., Rzhetsky, A. (November 2009) Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput Biol, 5 (11). e1000559.
J
James, Ranjit Immanuel, Verma, Richa, Johnson, Latif Rajesh, Manesh, Abi, Jayakumar, Jaikishan, Sen, Mousumi, Joseph, Jayaraj, Kumarasami, Ramdayalan, Mitra, Partha P, Sivaprakasam, Mohanasankar, Varghese, George M (July 2023) A Standardized Protocol for the Safe Retrieval of Infectious Postmortem Human Brain for Studying Whole-Brain Pathology. American Journal of Forensic Medicine and Pathology. ISSN 0195-7910
Janowitz, T., Menon, D. K. (April 2010) Exploring new routes for neuroprotective drug development in traumatic brain injury. Sci Transl Med, 2 (27). 27rv1. ISSN 1946-6234
Juntti, S. A., Tollkuhn, J., Wu, M. V., Fraser, E. J., Soderborg, T., Tan, S., Honda, S., Harada, N., Shah, N. M. (April 2010) The androgen receptor governs the execution, but not programming, of male sexual and territorial behaviors. Neuron, 66 (2). pp. 260-72. ISSN 1097-4199 (Electronic)0896-6273 (Linking)
K
Karakaya, Eda, Oleinik, Natalia, Edwards, Jazlyn, Tomberlin, Jensen, Barker, Randy Bent, Berber, Burak, Ericsson, Maria, Alsudani, Habeeb, Ergul, Adviye, Beyaz, Semir, Lemasters, John J, Ogretmen, Besim, Albayram, Onder (February 2024) p17/C18-ceramide-mediated mitophagy is an endogenous neuroprotective response in preclinical and clinical brain injury. PNAS Nexus, 3 (2). ISSN 2752-6542
Karten, H. J., Brzozowska-Prechtl, A., Lovell, P. V., Tang, D. D., Mello, C. V., Wang, H., Mitra, P. P. (November 2013) Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas. Journal of Comparative Neurology, 521 (16). pp. 3702-15. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)
Karthik, Srinivasa, Joseph, Jayaraj, Jayakumar, Jaikishan, Manoj, Rahul, Shetty, Mahesh, Bota, Mihail, Verma, Richa, Mitra, Partha, Sivaprakasam, Mohanasankar (September 2023) Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain. Journal of Neuroscience Methods, 397. p. 109921. ISSN 0165-0270
Kaufman, M. T., Churchland, A. K. (2013) Cognitive neuroscience: Sensory noise drives bad decisions. Nature, 496 (7444). pp. 172-173. ISSN 00280836 (ISSN)
Kay, L. M., Beshel, J. (August 2010) A Beta Oscillation Network in the Rat Olfactory System During a 2-Alternative Choice Odor Discrimination Task. Journal of Neurophysiology, 104 (2). pp. 829-839. ISSN 0022-3077
Kemper, E. M., Leenders, W., Kusters, B., Lyons, S., Buckle, T., Heerschap, A., Boogerd, W., Beijnen, J. H., van Tellingen, O. (December 2006) Development of luciferase tagged brain tumour models in mice for chemotherapy intervention studies. Eur J Cancer, 42 (18). pp. 3294-303. ISSN 0959-8049 (Print)0959-8049 (Linking)
Kepecs, A. (July 2019) Summary: Order and Disorder in Brains and Behavior. Cold Spring Harb Symp Quant Biol, 83. pp. 219-225. ISSN 0091-7451
Kepecs, A. (June 2013) The uncertainty of it all. Nature Neuroscience, 16 (6). pp. 660-2. ISSN 1097-6256
Kepecs, A., Wang, X. J. (2000) Analysis of complex bursting in cortical pyramidal neuron models. Neurocomputing, 32-33. pp. 181-187. ISSN 09252312 (ISSN)
Kim, Y., Wang, W. Z., Comte, I., Pastrana, E., Tran, P. B., Brown, J., Miller, R. J., Doetsch, F., Molnár, Z., Szele, F. G. (August 2010) Dopamine stimulation of postnatal murine subventricular zone neurogenesis via the D3 receptor. Journal of Neurochemistry, 114 (3). pp. 750-760.
Kim, Y. S., Choi, E. K., Yang, H. M., Kim, J., Yu, I. J., Marshak, D. R., Carp, R. I., Wisniewski, H. M. (1994) Increased Expression of S100-Beta in Brain of Im Mice Injected with 87v Scrapie Strain. Neurobiology of Aging, 15. S89-S89. ISSN 0197-4580
Kleinfeld, D., Mitra, P. P., Helmchen, F., Denk, W. (1998) Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. Proceedings of the National Academy of Sciences of the United States of America, 95 (26). pp. 15741-15746. ISSN 00278424 (ISSN)
Kleinfeld, D., Mitra, P. P. (March 2014) Spectral methods for functional brain imaging. Cold Spring Harbor Protocols, 2014 (3). pp. 248-62. ISSN 1559-6095
Koch, Mathilda L., Riddle, Oscar (September 1918) The chemical composition of the brain of normal and ataxic (?) pigeons. The American Journal of Physiology, 46 (1). pp. 124-136.
Koch, Christof, Svoboda, Karel, Bernard, Amy, Basso, Michele A, Churchland, Anne K, Fairhall, Adrienne L, Groblewski, Peter A, Lecoq, Jérôme A, Mainen, Zachary F, Mathis, Mackenzie W, Olsen, Shawn R, Phillips, John W, Pouget, Alexandre, Saxena, Shreya, Siegle, Josh H, Zador, Anthony M (October 2022) Next-generation brain observatories. Neuron. ISSN 0896-6273
Kopec, C. D., Bowers, A. C., Pai, S. , Brody, C. D. (March 2011) Semi-automated atlas-based analysis of brain histological sections. Journal of Neuroscience Methods, 196 (1). ISSN 0165-0270
Koulen, P., Janowitz, T., Johnston, L. D., Ehrlich, B. E. (September 2000) Conservation of localization patterns of IP(3) receptor type 1 in cerebellar Purkinje cells across vertebrate species. J Neurosci Res, 61 (5). pp. 493-9. ISSN 0360-4012 (Print)0360-4012
Kuhlman, S. J. (2007) Biological Rhythms Workshop IB: Neurophysiology of SCN Pacemaker Function. Cold Spring Harbor Symposia on Quantitative Biology, 72. pp. 21-33. ISSN 00917451 (ISSN)
Kuhlman, S. J., Huang, Z. J. (April 2008) High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression. PLoS ONE, 3 (4). e2005. ISSN 1932-6203 (Electronic)
L
La Manno, Gioele, Siletti, Kimberly, Furlan, Alessandro, Gyllborg, Daniel, Vinsland, Elin, Mossi Albiach, Alejandro, Mattsson Langseth, Christoffer, Khven, Irina, Lederer, Alex R, Dratva, Lisa M, Johnsson, Anna, Nilsson, Mats, Lönnerberg, Peter, Linnarsson, Sten (July 2021) Molecular architecture of the developing mouse brain. Nature. ISSN 0028-0836
Langdon, Christopher, Genkin, Mikhail, Engel, Tatiana A (April 2023) A unifying perspective on neural manifolds and circuits for cognition. Nature Reviews Neuroscience. ISSN 1471-003X
Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Flowers, Katelyn, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (December 2023) The molecular cytoarchitecture of the adult mouse brain. Nature, 624 (7991). pp. 333-342. ISSN 0028-0836
Lazutkin, AA, Shuvaev, SA, Barykina, NV (January 2019) Click histochemistry for whole-mount staining of brain structures. MethodsX, 6. pp. 1986-1991. ISSN 2215-0161
Le, S., Zhu, J. J., Anthony, D. C., Greider, C. W., Black, P. M. (May 1998) Telomerase activity in human gliomas. Neurosurgery, 42 (5). 1120-4; discussion 1124. ISSN 0148-396X (Print)
Lee, B.C., Lin, M.K., Fu, Y., Hata, J., Miller, M.I., Mitra, P. P. (May 2020) Multimodal Cross-registration and Quantification of Metric Distortions in Marmoset Whole Brain Histology using Diffeomorphic Mappings. J Comp Neurol. ISSN 0021-9967
Li, K., Zhou, T., Liao, L., Yang, Z., Wong, C., Henn, F., Malinow, R., Yates Iii, J. R., Hu, H. (August 2013) βCaMKII in lateral habenula mediates core symptoms of depression. Science, 341 (6149). pp. 1016-1020. ISSN 00368075 (ISSN)
Li, L. M., Menon, D. K., Janowitz, T. (January 2014) Cross-sectional analysis of data from the U.S. clinical trials database reveals poor translational clinical trial effort for traumatic brain injury, compared with stroke. PLoS One, 9 (1). e84336. ISSN 1932-6203
Li, L. N., Mignone, J., Yang, M., Matic, M., Penman, S., Enikolopov, G., Hoffman, R. M. (August 2003) Nestin expression in hair follicle sheath progenitor cells. Proceedings of the National Academy of Sciences of the United States of America, 100 (17). pp. 9958-9961. ISSN 0027-8424
Lin, M. K., Takahashi, Y. S., Huo, B. X., Hanada, M., Nagashima, J., Hata, J., Tolpygo, A. S., Ram, K., Lee, B. C., Miller, M. I., Rosa, M. G., Sasaki, E., Iriki, A., Okano, H., Mitra, P. (February 2019) A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Elife, 8. ISSN 2050-084x
Liu, X., Yu, Q., Huang, Z., Zwiebel, L. J., Hall, J. C., Rosbash, M. (1991) The strength and periodicity of D. melanogaster circadian rhythms are differentially affected by alterations in period gene expression. Neuron, 6 (5). pp. 753-766. ISSN 08966273 (ISSN)
Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (February 2020) ZEBrA - Zebra finch Expression Brain Atlas: a resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol. ISSN 0021-9967 (Public Dataset)
Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (August 2020) ZEBrA: Zebra finch Expression Brain Atlas-A resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol, 528 (12). pp. 2099-2131. ISSN 0021-9967
Lu, Shaina (September 2021) The replicability of spatially-resolved transcriptomics for modern neuroscience. PhD thesis, Cold Spring Harbor Laboratory.
Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (July 2021) Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain. PLoS Biology, 19 (7). e3001341. ISSN 1545-7885
M
MacDiarmid, J. A., Langova, V., Bailey, D., Pattison, S. T., Pattison, S. L., Christensen, N., Armstrong, L. R., Brahmbhatt, V. N., Smolarczyk, K., Harrison, M. T., Costa, M., Mugridge, N. B., Sedliarou, I., Grimes, N. A., Kiss, D. L., Stillman, B., Hann, C. L., Gallia, G. L., Graham, R. M., Brahmbhatt, H. (April 2016) Targeted Doxorubicin Delivery to Brain Tumors via Minicells: Proof of Principle Using Dogs with Spontaneously Occurring Tumors as a Model. PLoS One, 11 (4). e0151832. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Maihofer, Adam X, Engchuan, Worrawat, Huguet, Guillaume, Klein, Marieke, MacDonald, Jeffrey R, Shanta, Omar, Thiruvahindrapuram, Bhooma, Jean-Louis, Martineau, Saci, Zohra, Jacquemont, Sebastien, Scherer, Stephen W, Ketema, Elizabeth, Aiello, Allison E, Amstadter, Ananda B, Avdibegović, Esmina, Babic, Dragan, Baker, Dewleen G, Bisson, Jonathan I, Boks, Marco P, Bolger, Elizabeth A, Bryant, Richard A, Bustamante, Angela C, Caldas-de-Almeida, Jose Miguel, Cardoso, Graça, Deckert, Jurgen, Delahanty, Douglas L, Domschke, Katharina, Dunlop, Boadie W, Dzubur-Kulenovic, Alma, Evans, Alexandra, Feeny, Norah C, Franz, Carol E, Gautam, Aarti, Geuze, Elbert, Goci, Aferdita, Hammamieh, Rasha, Jakovljevic, Miro, Jett, Marti, Jones, Ian, Kaufman, Milissa L, Kessler, Ronald C, King, Anthony P, Kremen, William S, Lawford, Bruce R, Lebois, Lauren AM, Lewis, Catrin, Liberzon, Israel, Linnstaedt, Sarah D, Lugonja, Bozo, Luykx, Jurjen J, Lyons, Michael J, Mavissakalian, Matig R, McLaughlin, Katie A, McLean, Samuel A, Mehta, Divya, Mellor, Rebecca, Morris, Charles Phillip, Muhie, Seid, Orcutt, Holly K, Peverill, Matthew, Ratanatharathorn, Andrew, Risbrough, Victoria B, Rizzo, Albert, Roberts, Andrea L, Rothbaum, Alex O, Rothbaum, Barbara O, Roy-Byrne, Peter, Ruggiero, Kenneth J, Rutten, Bart PF, Schijven, Dick, Seng, Julia S, Sheerin, Christina M, Sorenson, Michael A, Teicher, Martin H, Uddin, Monica, Ursano, Robert J, Vinkers, Christiaan H, Voisey, Joanne, Weber, Heike, Winternitz, Sherry, Xavier, Miguel, Yang, Ruoting, McD Young, Ross, Zoellner, Lori A, Psychiatric Genomics Consortium PTSD Working Group, Psychiatric Genomics Consortium CNV Working Group, Salem, Rany M, Shaffer, Richard A, Wu, Tianying, Ressler, Kerry J, Stein, Murray B, Koenen, Karestan C, Sebat, Jonathan, Nievergelt, Caroline M (September 2022) Rare copy number variation in posttraumatic stress disorder. Molecular Psychiatry. ISSN 1359-4184
Mainen, Z. F., Maletic-Savatic, M., Shi, S. H., Hayashi, Y., Malinow, R., Svoboda, K. (June 1999) Two-photon imaging in living brain slices. Methods, 18 (2). pp. 231-39. ISSN 1046-2023 (Print)
Majka, P., Bai, S., Bakola, S., Bednarek, S., Chan, J. M., Jermakow, N., Passarelli, L., Reser, D. H., Theodoni, P., Worthy, K. H., Wang, X. J., Wojcik, D. K., Mitra, P. P., Rosa, M. G. P. (February 2020) Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nat Commun, 11 (1). p. 1133. ISSN 2041-1723 (Public Dataset)
Makaryus, R., Lee, H., Feng, T., Park, J. H., Nedergaard, M., Jacob, Z., Enikolopov, G., Benveniste, H. (September 2015) Brain Maturation in Neonatal Rodents Is Impeded by Sevoflurane Anesthesia. Anesthesiology, 123 (3). pp. 557-568. ISSN 1528-1175 (Electronic)0003-3022 (Linking)
Maletic-Savatic, M., Vingara, L. K., Manganas, L. N., Li, Y., Zhang, S., Sierra, A., Hazel, R., Smith, D., Wagshul, M. E., Henn, F., Krupp, L., Enikolopov, G., Benveniste, H., Djuric, P. M., Pelczer, I. (2008) Metabolomics of neural progenitor cells: a novel approach to biomarker discovery. Cold Spring Harb Symp Quant Biol, 73. pp. 389-401. ISSN 1943-4456 (Electronic)0091-7451 (Linking)
Manganas, L. N., Zhang, X. Y., Li, Y., Hazel, R. D., Smith, S. D., Wagshul, M. E., Henn, F. A., Benveniste, H., Djuric, P. M., Enikolopov, G. N., Maletic-Savatic, M. (November 2007) Magnetic resonance spectroscopy identifies neural progenitor cells in the live human brain. Science, 318 (5852). pp. 980-985. ISSN 0036-8075
Manoli, D. S., Tollkuhn, J. (January 2018) Gene regulatory mechanisms underlying sex differences in brain development and psychiatric disease. Ann N Y Acad Sci, 1420 (1). pp. 26-45. ISSN 0077-8923
Martin, K. A., Grant, S. G. N., Hockfield, S. (July 1992) The mas proto-oncogene is developmentally regulated in the rat central nervous system. Developmental Brain Research, 68 (1). pp. 75-82. ISSN 0165-3806
Matheson, S. F., Hu, K. Q., Brouns, M. R., Sordella, R., VanderHeide, J. D., Settleman, J. (2006) Distinct but overlapping functions for the closely related p190 RhoGAPs in neural development. Developmental Neuroscience, 28 (6). pp. 538-50. ISSN 0378-5866 (Print)
Maximov, A., Pang, Z. P. P., Tervo, D. G. R., Sudhof, T. C. (March 2007) Monitoring synaptic transmission in primary neuronal cultures using local extracellular stimulation. Journal of Neuroscience Methods, 161 (1). pp. 75-87. ISSN 0165-0270
McGinty, V. B., Hayden, B. Y., Heilbronner, S. R., Dumont, E. C., Graves, S. M., Mirrione, M. M., Hoffman, J. d., Sartor, G. C., España, R. A., Millan, E. Z., DiFeliceantonio, A. G., Marchant, N. J., Napier, T. C., Root, D. H., Borgland, S. L., Treadway, M. T., Floresco, S. B., McGinty, J. F., Haber, S. N. (2011) Emerging, Reemerging, and Forgotten Brain Areas of the Reward Circuit: Notes from the 2010 Motivational and Neural Networks Conference. Behavioural Brain Research, 225 (1). pp. 348-357. ISSN 0166-4328
Megjhani, M., Rey-Villamizar, N., Merouane, A., Lu, Y., Mukherjee, A., Trett, K., Chong, P., Harris, C., Shain, W., Roysam, B. (July 2015) Population-scale Three-dimensional Reconstruction and Quantitative Profiling of Microglia Arbors. Bioinformatics, 31 (13). pp. 2190-2198. ISSN 1367-4803
Melka, M. G., Gillis, J., Bernard, M., Abrahamowicz, M., Chakravarty, M. M., Leonard, G. T., Perron, M., Richer, L., Veillette, S., Banaschewski, T., Barker, G. J., BüChel, C., Conrod, P., Flor, H., Heinz, A., Garavan, H., Brühl, R., Mann, K., Artiges, E., Lourdusamy, A., Lathrop, M., Loth, E., Schwartz, Y., Frouin, V., Rietschel, M., Smolka, M. N., hle, A., Gallinat, J., Struve, M., Lattka, E., Waldenberger, M., Schumann, G., Pavlidis, P., Gaudet, D., Paus, T., Pausova, Z. (2013) FTO, obesity and the adolescent brain. Human Molecular Genetics, 22 (5). pp. 1050-1058. ISSN 09646906 (ISSN)
Menashe, I., Grange, P., Larsen, E. C., Banerjee-Basu, S., Mitra, P. P. (July 2013) Co-expression Profiling of Autism Genes in the Mouse Brain. PLoS Computational Biology, 9 (7). ISSN 1553734X
Milanovic, S., Radulovic, J., Laban, O., Stiedl, O., Henn, F., Spiess, J. (February 1998) Production of the Fos protein after contextual fear conditioning of C57BL/6N mice. Brain Research, 784 (1-2). pp. 37-47. ISSN 0006-8993 (Print)0006-8993 (Linking)
Miller, C. T., Hale, M. E., Okano, H., Okabe, S., Mitra, P. (February 2019) Comparative Principles for Next-Generation Neuroscience. Frontiers in Behavioral Neuroscience, 13. ISSN 1662-5153
Mirrione, M. M., Schulz, D., Lapidus, K. A., Zhang, S., Goodman, W., Henn, F. A. (2014) Increased metabolic activity in the septum and habenula during stress is linked to subsequent expression of learned helplessness behavior. Frontiers in Human Neuroscience, 8. p. 29. ISSN 1662-5161
Mitra, PP, Pesaran, B (April 1998) Analysis of Dynamic Brain Imaging Data. Biophysical Journal. (Submitted)
Mitra, P. P., Bokil, H. S. (2007) Observed Brain Dynamics. Oxford University Press, p. 408.
Mitra, P. P., Maniar, H. (September 2006) Concentration maximization and local basis expansions (LBEX) for linear inverse problems. IEEE Trans Biomed Eng, 53 (9). pp. 1775-82. ISSN 0018-9294 (Print)
Mitra, P. P., Pesaran, B. (February 1999) Analysis of dynamic brain imaging data. Biophysical Journal, 76 (2). 691-708 .
Mitra, P. P., Rosa, M. G., Karten, H. J. (June 2013) Panoptic Neuroanatomy: Digital Microscopy of Whole Brains and Brain-Wide Circuit Mapping. Brain, Behavior and Evolution, 81 (4). pp. 203-205. ISSN 00068977 (ISSN)
Miura, K., Mainen, Z. F., Uchida, N. (June 2012) Odor Representations in Olfactory Cortex: Distributed Rate Coding and Decorrelated Population Activity. Neuron, 74 (6). pp. 1087-1098. ISSN 0896-6273
Mohan, Hemanth, An, Xu, Xu, X Hermione, Kondo, Hideki, Zhao, Shengli, Matho, Katherine S, Wang, Bor-Shuen, Musall, Simon, Mitra, Partha, Huang, Z Josh (January 2023) Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks. Nature Neuroscience. ISSN 1097-6256
Morris, D. H., Dubnau, J., Park, J. H., Rawls Jr, J. M. (August 2012) Divergent functions through alternative splicing: The Drosophila CRMP gene in pyrimidine metabolism, brain, and behavior. Genetics, 191 (4). pp. 1227-1238. ISSN 0016-6731
Muller, D., Hida, B., Guidone, G., Speth, R. C., Michurina, T. V., Enikolopov, G. N., Middendorff, R. (October 2009) Expression of Guanylyl Cyclase (GC)-A and GC-B during Brain Development: Evidence for a Role of GC-B in Perinatal Neurogenesis. Endocrinology, 150 (12). pp. 5520-5529. ISSN 0013-7227
Murray, D. W., Didier, S., Chan, A., Paulino, V., Van Aelst, L., Ruggieri, R., Tran, N. L., Byrne, A. T., Symons, M. (February 2014) Guanine nucleotide exchange factor Dock7 mediates HGF-induced glioblastoma cell invasion via Rac activation. British Journal of Cancer, 110 (5). pp. 1307-1315. ISSN 0007-0920
Murthy, M., Turner, G. (2013) Dissection of the head cuticle and sheath of living flies for whole-cell patch-clamp recordings in the brain. Cold Spring Harbor Protocols, 8 (2). pp. 134-139. ISSN 19403402 (ISSN)
N
Narasimhan, Arun, Venkataraju, Kannan Umadevi, Mizrachi, Judith, Albeanu, Dinu F, Osten, Pavel (April 2017) Oblique light-sheet tomography: fast and high resolution volumetric imaging of mouse brains. bioRxiv. (Submitted)
Navlakha, S., Kingsford, C. (November 2010) Exploring biological network dynamics with ensembles of graph partitions. Pac Symp Biocomput. pp. 166-177. ISSN 2335-6928
Nawa, H., Carnahan, J., Gall, C. (July 1995) BDNF protein measured by a novel enzyme immunoassay in normal brain and after seizure: partial disagreement with mRNA levels. Eur J Neurosci, 7 (7). pp. 1527-35. ISSN 0953-816X (Print)
Nawa, H., Pelleymounter, M. A., Carnahan, J. (June 1994) Intraventricular Administration of Bdnf Increases Neuropeptide Expression in Newborn Rat-Brain. Journal of Neuroscience, 14 (6). pp. 3751-3765. ISSN 0270-6474
Ng, L., Bernard, A., Lau, C., Overly, C. C., Dong, H.-W., Kuan, C., Pathak, S., Sunkin, S. M., Dang, C., Bohland, J. W., Bokil, H. S., Mitra, P. P., Puelles, L., Hohmann, J., Anderson, D. J., Lein, E. S., Jones, A. R., Hawrylycz, M. (March 2009) An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci, 12 (3). pp. 356-362. ISSN 1097-6256
Ng, R. H., Marshall, F. D., Henn, F. A., Sellstrom, A. (February 1977) Metabolism of carnosine and homocarnosine in subcellular fractions and neuronal and glial cell-enriched fractions of rabbit brain. Journal of Neurochemistry, 28 (2). pp. 449-52. ISSN 0022-3042
Ng, R. H., Marshall, F. D., Henn, F. A., Sellstrom, A. (February 1977) Metabolism of carnosine and homocarnosine in subcellular fractions and neuronal and glial cell-enriched fractions of rabbit brain. J Neurochem, 28 (2). pp. 449-52.
Northoff, G., Braus, D. F., Sartorius, A., Khoram-Sefat, D., Russ, M., Eckert, J., Herrig, M., Leschinger, A., Bogerts, B., Henn, F. A. (July 1999) Reduced activation and altered laterality in two neuroleptic-naive catatonic patients during a motor task in functional MRI. Psychological Medicine, 29 (4). pp. 997-1002. ISSN 0033-2917 (Print)0033-2917 (Linking)
O
Okano, Hideyuki, Mitra, Partha (April 2015) Brain-mapping projects using the common marmoset. Neuroscience Research, 93. pp. 3-7. ISSN 0168-0102
Osten, P., Margrie, T. W. (June 2013) Mapping brain circuitry with a light microscope. Nat Methods, 10 (6). pp. 515-23. ISSN 1548-7105 (Electronic)1548-7091 (Linking)
P
Pandurangan, Karthika, Jayakumar, Jaikishan, Savoia, Stephen, Nanda, Reetuparna, Lata, S, Kumar, E Harish, S, Suresh, Vasudevan, Sudha, Srinivasan, Chitra, Joseph, Jayaraj, Sivaprakasam, Mohanasankar, Verma, Richa (February 2024) Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain. Journal of Neuroscience Methods, 405. p. 110085. ISSN 0165-0270
Park, J. H., Glass, Z., Sayed, K., Michurina, T. V., Lazutkin, A., Mineyeva, O., Velmeshev, D., Ward, W. F., Richardson, A., Enikolopov, G. (June 2013) Calorie restriction alleviates the age-related decrease in neural progenitor cell division in the aging brain. European Journal of Neuroscience, 37 (12). pp. 1987-93. ISSN 0953-816X
Paus, T., Bernard, M., Chakravarty, M. M., Davey Smith, G., Gillis, J., Lourdusamy, A., Melka, M. G., Leonard, G., Pavlidis, P., Perron, M., Pike, G. B., Richer, L., Schumann, G., Timpson, N., Toro, R., Veillette, S., Pausova, Z. (2012) KCTD8 gene and brain growth in adverse intrauterine environment: A genome-wide association study. Cerebral Cortex, 22 (11). pp. 2634-2642. ISSN 10473211 (ISSN)
Peng, Hanchuan, Liu, Yufeng, Jiang, Shengdian, Li, Yingxin, Zhao, Sujun, Yun, Zhixi, Zhao, Zuo-Han, Zhang, Lingli, Wang, Gaoyu, Chen, Xin, Manubens-Gil, Linus, Hang, Yuning, Garcia-Forn, Marta, Wang, Wei, De Rubeis, Silvia, Wu, Zhuhao, Osten, Pavel, Gong, Hui, Hawrylycz, Michael, Mitra, Partha, Dong, Hong-Wei, Luo, Qingming, Ascoli, Giorgio, Zeng, Hongkui, Liu, Lijuan (July 2023) Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry. (Submitted)
Peng, Hanchuan, Xie, Peng, Liu, Lijuan, Kuang, Xiuli, Wang, Yimin, Qu, Lei, Gong, Hui, Jiang, Shengdian, Li, Anan, Ruan, Zongcai, Ding, Liya, Yao, Zizhen, Chen, Chao, Chen, Mengya, Daigle, Tanya L, Dalley, Rachel, Ding, Zhangcan, Duan, Yanjun, Feiner, Aaron, He, Ping, Hill, Chris, Hirokawa, Karla E, Hong, Guodong, Huang, Lei, Kebede, Sara, Kuo, Hsien-Chi, Larsen, Rachael, Lesnar, Phil, Li, Longfei, Li, Qi, Li, Xiangning, Li, Yaoyao, Li, Yuanyuan, Liu, An, Lu, Donghuan, Mok, Stephanie, Ng, Lydia, Nguyen, Thuc Nghi, Ouyang, Qiang, Pan, Jintao, Shen, Elise, Song, Yuanyuan, Sunkin, Susan M, Tasic, Bosiljka, Veldman, Matthew B, Wakeman, Wayne, Wan, Wan, Wang, Peng, Wang, Quanxin, Wang, Tao, Wang, Yaping, Xiong, Feng, Xiong, Wei, Xu, Wenjie, Ye, Min, Yin, Lulu, Yu, Yang, Yuan, Jia, Yuan, Jing, Yun, Zhixi, Zeng, Shaoqun, Zhang, Shichen, Zhao, Sujun, Zhao, Zijun, Zhou, Zhi, Huang, Z Josh, Esposito, Luke, Hawrylycz, Michael J, Sorensen, Staci A, Yang, X William, Zheng, Yefeng, Gu, Zhongze, Xie, Wei, Koch, Christof, Luo, Qingming, Harris, Julie A, Wang, Yun, Zeng, Hongkui (October 2021) Morphological diversity of single neurons in molecularly defined cell types. Nature, 598 (7879). pp. 174-181. ISSN 0028-0836
Petzold, G. C., Albeanu, D. F., Sato, T. F., Murthy, V. N. (2008) Coupling of Neural Activity to Blood Flow in Olfactory Glomeruli Is Mediated by Astrocytic Pathways. Neuron, 58 (6). pp. 897-910. ISSN 08966273 (ISSN)
Peunova, N., Scheinker, V., Cline, H., Enikolopov, G. (November 2001) Nitric oxide is an essential negative regulator of cell proliferation in Xenopus brain. Journal of Neuroscience, 21 (22). pp. 8809-8818. ISSN 0270-6474
Pi, H. J., Hangya, B., Kvitsiani, D., Sanders, J. I., Huang, Z. J., Kepecs, A. (October 2013) Cortical interneurons that specialize in disinhibitory control. Nature, 503. pp. 521-24. ISSN 1476-4687 (Electronic)0028-0836 (Linking)
Pinskiy, V., Jones, J., Tolpygo, A. S., Franciotti, N., Weber, K., Mitra, P. P. (July 2015) High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique. PLoS One, 10 (7). e0102363. ISSN 1932-6203 (Electronic)1932-6203 (Linking)
Pinskiy, V., Tolpygo, A. S., Jones, J., Weber, K., Franciotti, N., Mitra, P. P. (2013) A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal of Neuroscience Methods, 218 (2). pp. 206-21. ISSN 0165-0270
Pinto, S., Quintana, D. G., Smith, P., Mihalek, R. M., Hou, Z. H., Boynton, S., Jones, C. J., Hendricks, M., Velinzon, K., Wohlschlegel, J. A., Austin, R. J., Lane, W. S., Tully, T., Dutta, A. (May 1999) latheo encodes a subunit of the origin recognition complex and disrupts neuronal proliferation and adult olfactory memory when mutant. Neuron, 23 (1). pp. 45-54. ISSN 0896-6273 (Print)
Pollatou, A., Ferrante, D. D. (August 2020) Out-of-focus brain image detection in serial tissue sections. J Neurosci Methods, 345. p. 108852. ISSN 0165-0270
Q
Qian, Yongjun, Li, Jiayun, Zhao, Shengli, Matthews, Elizabeth A, Adoff, Michael, Zhong, Weixin, An, Xu, Yeo, Michele, Park, Christine, Yang, Xiaolu, Wang, Bor-Shuen, Southwell, Derek G, Huang, Z Josh (October 2022) Programmable RNA sensing for cell monitoring and manipulation. Nature. ISSN 0028-0836
R
Ragan, T., Kadiri, L. R., Venkataraju, K. U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H. S., Osten, P. (March 2012) Serial two-photon tomography for automated ex vivo mouse brain imaging. Nature Methods, 9 (3). pp. 255-258. ISSN 15487091 (ISSN)
Regulski, M., Enikolopov, G., Tully, T. (September 2001) NO signaling in the adult Drosophila melanogaster brain. Journal of Neurochemistry, 78. p. 90. ISSN 0022-3042
Renton, Angela I, Dao, Thuy T, Johnstone, Tom, Civier, Oren, Sullivan, Ryan P, White, David J, Lyons, Paris, Slade, Benjamin M, Abbott, David F, Amos, Toluwani J, Bollmann, Saskia, Botting, Andy, Campbell, Megan EJ, Chang, Jeryn, Close, Thomas G, Doerig, Monika, Eckstein, Korbinian, Egan, Gary F, Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G, Garrido, Marta I, Ghosh, Satrajit S, Grignard, Martin, Halchenko, Yaroslav O, Hannan, Anthony J, Heinsfeld, Anibal S, Huber, Laurentius, Hughes, Matthew E, Kaczmarzyk, Jakub R, Kasper, Lars, Kuhlmann, Levin, Lou, Kexin, Mantilla-Ramos, Yorguin-Jose, Mattingley, Jason B, Meier, Michael L, Morris, Jo, Narayanan, Akshaiy, Pestilli, Franco, Puce, Aina, Ribeiro, Fernanda L, Rogasch, Nigel C, Rorden, Chris, Schira, Mark M, Shaw, Thomas B, Sowman, Paul F, Spitz, Gershon, Stewart, Ashley W, Ye, Xincheng, Zhu, Judy D, Narayanan, Aswin, Bollmann, Steffen (May 2024) Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods, 21 (2). pp. 804-808. ISSN 1548-7091
Ribary, U., Mitra, P. (2000) Thalamo-cortical spatio-temporal dynamics and its alterations in human brain pathology. NeuroImage, 11 (5, Sup). xxv-lxviii. ISSN 1053-8119
Richards, B. A., Lillicrap, T. P., Beaudoin, P., Bengio, Y., Bogacz, R., Christensen, A., Clopath, C., Costa, R. P., de Berker, A., Ganguli, S., Gillon, C. J., Hafner, D., Kepecs, A., Kriegeskorte, N., Latham, P., Lindsay, G. W., Miller, K. D., Naud, R., Pack, C. C., Poirazi, P., Roelfsema, P., Sacramento, J., Saxe, A., Scellier, B., Schapiro, A. C., Senn, W., Wayne, G., Yamins, D., Zenke, F., Zylberberg, J., Therien, D., Kording, K. P. (November 2019) A deep learning framework for neuroscience. Nat Neurosci, 22 (11). pp. 1761-1770. ISSN 1097-6256
Rockland, K. S. (March 2014) Zinc-positive and zinc-negative connections of the claustrum. Frontiers in Systems Neuroscience, 8 (MAR).
Rollins, R. A., Haghighi, F., Edwards, J. R., Das, Rajdeep, Zhang, M. Q., Ju, J., Bestor, T. H. (2006) Large-scale structure of genomic methylation patterns. Genome Research, 16 (2). pp. 157-163. ISSN 10889051
Ropelewski, Alexander J, Rizzo, Megan A, Swedlow, Jason R, Huisken, Jan, Osten, Pavel, Khanjani, Neda, Weiss, Kurt, Bakalov, Vesselina, Engle, Michelle, Gridley, Lauren, Krzyzanowski, Michelle, Madden, Tom, Maiese, Deborah, Mandal, Meisha, Waterfield, Justin, Williams, David, Hamilton, Carol M, Huggins, Wayne (July 2022) Standard metadata for 3D microscopy. Scientific Data, 9 (1). p. 449. ISSN 2052-4463
Ruiz-Ortiz, Jenelys, Tollkuhn, Jessica (January 2021) Specificity in sociogenomics: Identifying causal relationships between genes and behavior. Hormones and Behaviour, 127. p. 104882. ISSN 0018-506X
Ruthazer, E. S., Li, J., Cline, H. T. (March 2006) Stabilization of axon branch dynamics by synaptic maturation. J Neurosci, 26 (13). pp. 3594-603. ISSN 1529-2401 (Electronic)
S
Sachse, Silke, Beshel, Jennifer (October 2016) The good, the bad, and the hungry: how the central brain codes odor valence to facilitate food approach in Drosophila. Current Opinion in Neurobiology, 40. pp. 53-58. ISSN 0959-4388
Sapiro, A. L., Shmueli, A., Henry, G. L., Li, Q., Shalit, T., Yaron, O., Paas, Y., Billy Li, J., Shohat-Ophir, G. (February 2019) Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain. Proc Natl Acad Sci U S A, 116 (6). pp. 2318-2327. ISSN 0027-8424
Sartorius, A., Henn, F. A. (2007) Deep brain stimulation of the lateral habenula in treatment resistant major depression. Med Hypotheses, 69 (6). pp. 1305-8. ISSN 0306-9877 (Print)0306-9877 (Linking)
Sartorius, A., Ruf, M., Kief, C., Demirakca, T., Bailer, J., Ende, G., Henn, F. A., Meyer-Lindenberg, A., Dressing, H. (August 2008) Abnormal amygdala activation profile in pedophilia. Eur Arch Psychiatry Clin Neurosci, 258 (5). pp. 271-7. ISSN 0940-1334 (Print)0940-1334 (Linking)
Schmack, K., Sterzer, P. (June 2019) Delusions: sticking with conclusions. Brain, 142 (6). pp. 1497-1500. ISSN 0006-8950
Schmitt, A., May, B., Muller, B., Jatzko, A., Petroianu, G., Braus, D. F., Henn, F. A. (November 2003) Effects of chronic haloperidol and clozapine treatment on AMPA and kainate receptor binding in rat brain. Pharmacopsychiatry, 36 (6). pp. 292-6. ISSN 0176-3679 (Print)0176-3679 (Linking)
Sharma, Ashika, Jayakumar, Jaikishan, Mitra, Partha P, Chakraborti, Sutanu, Kumar, P Sreenivasa (June 2021) Application of Supervised Machine Learning to Extract Brain Connectivity Information from Neuroscience Research Articles. Interdisciplinary Sciences: Computational Life Sciences. ISSN 1913-2751
Shen, Yang, Dasgupta, Sanjoy, Navlakha, Saket (September 2023) Reducing Catastrophic Forgetting With Associative Learning: A Lesson From Fruit Flies. Neural Computation. pp. 1-23. ISSN 0899-7667
Sheppard, J. P., Wang, J. P., Wong, P. C. M. (January 2011) Large-Scale Cortical Functional Organization and Speech Perception across the Lifespan. PLoS ONE, 6 (1). ISSN 1932-6203
Shuai, Y. C., Zhang, Y. S., Gao, L. W., Zhong, Y. (March 2011) Stress Resistance Conferred by Neuronal Expression of Dominant-Negative Rac in Adult Drosophila melanogaster. Journal of Neurogenetics, 25 (1-2). pp. 35-39. ISSN 0167-7063
Shuvaev, Sergey, Amelchenko, Evgeny, Smagin, Dmitry, Kudryavtseva, Natalia, Enikolopov, Grigori, Koulakov, Alexei (March 2023) A normative theory of social conflict. (Submitted)
Shuvaev, Sergey, Lazutkin, Alexander, Kiryanov, Roman, Anokhin, Konstantin, Enikolopov, Grigori, Koulakov, Alexei A (March 2022) Spatiotemporal 3D image registration for mesoscale studies of brain development. Scientific Reports, 12 (1). p. 3648. ISSN 2045-2322
Srivastava, S., Osten, P., Vilim, F. S., Khatri, L., Inman, G., States, B., Daly, C., DeSouza, S., Abagyan, R., Valtschanoff, J. G., Weinberg, R. J., Ziff, E. B. (1998) Novel anchorage of GluR2/3 to the postsynaptic density by the AMPA receptor-binding protein ABP. Neuron, 21 (3). pp. 581-591. ISSN 08966273 (ISSN)
Stamm, S., Casper, D., Lees-Miller, J. P., Helfman, D. M. (November 1993) Brain-specific tropomyosins TMBr-1 and TMBr-3 have distinct patterns of expression during development and in adult brain. Proc Natl Acad Sci U S A, 90 (21). pp. 9857-61. ISSN 0027-8424 (Print)
Stark, K. L., Xu, B., Bagchi, A., Lai, W. S., Liu, H., Hsu, R., Wan, X., Pavlidis, P., Mills, A. A., Karayiorgou, M., Gogos, J. A. (June 2008) Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model. Nat Genet, 40 (6). pp. 751-760.
Stevens, C. F., Zador, A. (1995) The enigma of the brain. Current Biology, 5 (12). pp. 1370-1371.
Sugrue, M. M., Brugge, J. S., Marshak, D. R., Greengard, P., Gustafson, E. L. (August 1990) Immunocytochemical localization of the neuron-specific form of the c-src gene product, pp60c-src(+), in rat brain. J Neurosci, 10 (8). pp. 2513-27. ISSN 0270-6474 (Print)0270-6474 (Linking)
Sun, Shenghuan, Torok, Justin, Mezias, Christopher, Ma, Daren, Raj, Ashish (October 2023) Spatial cell-type enrichment predicts mouse brain connectivity. Cell Reports, 42 (10). p. 113258. ISSN 2211-1247
Suresh, Hamsini, Crow, Megan, Jorstad, Nikolas, Hodge, Rebecca, Lein, Ed, Dobin, Alexander, Bakken, Trygve, Gillis, Jesse (2022) Conserved coexpression at single cell resolution across primate brains. (Submitted)
Szelenyi, Eric, Fisenne, Danielle, Knox, Joseph E., Harris, Julie A., Gornet, James A., Palaniswamy, Ramesh, Kim, Yongsoo, Venkataraju, Kannan U., Osten, Pavel (November 2018) A brain network basis of Fragile X syndrome behavioral penetrance determined by X chromosome inactivation in female mice. bioRxiv.
T
Tai, Y., Jia, Y. (May 2017) TRPC Channels and Neuron Development, Plasticity, and Activities. Adv Exp Med Biol, 976. pp. 95-110. ISSN 0065-2598 (Print)0065-2598
Tervo, D. G. R., Karpova, A. Y. (October 2007) Rapidly inducible, genetically targeted inactivation of neural and synaptic activity in vivo. Current Opinion in Neurobiology, 17 (5). 581-586 .
Thompson, Dane A, Tsaava, Tea, Rishi, Arvind, Nadella, Sandeep, Mishra, Lopa, Tuveson, David A, Pavlov, Valentin A, Brines, Michael, Tracey, Kevin J, Chavan, Sangeeta S (2023) Optogenetic stimulation of the brainstem dorsal motor nucleus ameliorates acute pancreatitis. Frontiers in Immunology, 14. p. 1166212. ISSN 1664-3224
Tollkuhn, J., Xu, X., Shah, N. M. (August 2010) A custody battle for the mind: evidence for extensive imprinting in the brain. Neuron, 67 (3). pp. 359-62. ISSN 1097-4199 (Electronic)0896-6273 (Linking)
Trotman, L. C. (November 2011) Talk from Lloyd Trotman at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)
Tsigankov, D., Koulakov, A. A. (December 2010) Sperry versus Hebb: topographic mapping in Isl2/EphA3 mutant mice. BMC Neurosci, 11. p. 155. ISSN 1471-2202 (Electronic) 1471-2202 (Linking)
Turner, G. C. (November 2012) Talk from Glenn Turner at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)
U
Ueda, H.R., Dodt, H.-U., Osten, P., Economo, M.N., Chandrashekar, J., Keller, P.J. (May 2020) Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy. Neuron, 106 (3). pp. 369-387. ISSN 0896-6273
Urai, Anne E, Doiron, Brent, Leifer, Andrew M, Churchland, Anne K (January 2022) Large-scale neural recordings call for new insights to link brain and behavior. Nature Neuroscience. ISSN 1097-6256
Uziel, T., Karginov, F. V., Xie, S. Q., Parker, J. S., Wang, Y. D., Gajjar, A., He, L., Ellison, D., Gilbertson, R. J., Hannon, G. J., Roussel, M. F. (February 2009) The miR-17 similar to 92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma. Proceedings of the National Academy of Sciences of the United States of America, 106 (8). pp. 2812-2817. ISSN 0027-8424
V
Van Aelst, L., Caroni, P. (August 2010) Signaling mechanisms. Curr Opin Neurobiol, 20. pp. 1-3. ISSN 1873-6882 (Electronic) 0959-4388 (Linking)
Vasquez, J.H., Borniger, J. C. (March 2020) Neuroendocrine and Behavioral Consequences of Hyperglycemia in Cancer. Endocrinology, 161 (5). ISSN 0013-7227
Verma, Richa, Jayakumar, Jaikishan, Folkerth, Rebecca, Manger, Paul R, Bota, Mihail, Majumder, Moitrayee, Pandurangan, Karthika, Savoia, Stephen, Karthik, Srinivasa, Kumarasami, Ramdayalan, Joseph, Jayaraj, Rohini, G, Vasudevan, Sudha, Srinivasan, Chitra, Lata, S, Kumar, E Harish, Rangasami, Rajeswaran, Kumutha, Jayaraman, Suresh, S, Šimić, Goran, Mitra, Partha P, Sivaprakasam, Mohanasankar (April 2024) Histological characterization and development of mesial surface sulci in the human brain at 13-15 gestational weeks through high-resolution histology. Journal of Comparative Neurology, 532 (4). e25612. ISSN 0021-9967
Vogelstein, Joshua T, Amunts, Katrin, Andreou, Andreas, Angelaki, Dora, Ascoli, Giorgio, Bargmann, Cori, Burns, Randal, Cali, Corrado, Chance, Frances, Chun, Miyoung, Church, George, Cline, Hollis, Coleman, Todd, Rochefoucauld, Stephanie de La, Denk, Winfried, Elgoyhen, Ana Belen, Cummings, Ralph Etienne, Evans, Alan, Harris, Kenneth, Hausser, Michael, Hill, Sean, Inverso, Samuel, Jackson, Chad, Jain, Viren, Kass, Rob, Kasthuri, Bobby, Kiar, Gregory, Kording, Konrad, Koushika, Sandhya, Krakauer, John, Landis, Story, Layton, Jeff, Luo, Qingming, Marblestone, Adam, Markowitz, David, McArthur, Justin, Mensh, Brett, Milham, Michael, Mitra, Partha, Neskovic, Pedja, Nicolelis, Miguel, O'Brien, Richard, Oliva, Aude, Orban, Gergo, Peng, Hanchuan, Picchini-Schaffer, Alyssa, Picciotto, Marina, Poline, Jean-Baptiste, Poo, Mu-ming, Pouget, Alex, Raghavachari, Sri, Roskams, Jane, Sejnowski, Terry, Sommer, Fritz, Spruston, Nelson, Swanson, Larry, Toga, Arthur, Vogelstein, R Jacob, Yuste, Rafael, Zador, Anthony, Huganir, Richard, Miller, Michael (August 2016) Grand Challenges for Global Brain Sciences. arXiv. (Submitted)
W
Walker, W. H., Borniger, J. C. (June 2019) Molecular Mechanisms of Cancer-Induced Sleep Disruption. Int J Mol Sci, 20 (11). ISSN 1422-0067
Walker II, W. H., Borniger, J. C., Surbhi, . , Zalenski, A. A., Muscarella, S. L., Fitzgerald, J. A., Zhang, N., Gaudier-Diaz, M. M., DeVries, A. C. (August 2017) Mammary Tumors Induce Central Pro-inflammatory Cytokine Expression, but Not Behavioral Deficits in Balb/C Mice. Sci Rep, 7 (1). p. 8152. ISSN 2045-2322 (Electronic)2045-2322 (Linking)
Wang, Julia Huiming (June 2023) Interpretable Brain State Manifold for Characterizing Heterogeneity. PhD thesis, Cold Spring Harbor Laboratory.
Wang, J. X., Furukawa, H. (January 2019) Dissecting diverse functions of NMDA receptors by structural biology. Curr Opin Struct Biol, 54. pp. 34-42. ISSN 0959-440x
Wang, S. S. H., Mitra, P. P., Clark, D. A. (January 2002) Brain evolution (Communications arising): How did brains evolve? Nature, 415 (6868). p. 135. ISSN 0028-0836
Watakabe, A., Kobayashi, R., Helfman, D. M. (September 1996) N-tropomodulin: a novel isoform of tropomodulin identified as the major binding protein to brain tropomyosin. Journal of Cell Science, 109 (Pt 9). pp. 2299-310. ISSN 0021-9533
Weber-Fahr, W., Bachert, P., Henn, F. A., Braus, D. F., Ende, G. (July 2003) Signal enhancement through heteronuclear polarisation transfer in in-vivo 31P MR spectroscopy of the human brain. MAGMA, 16 (2). pp. 68-76. ISSN 0968-5243 (Print)0968-5243 (Linking)
Wen, Q., Chklovskii, D. B. (December 2005) Segregation of the brain into gray and white matter: a design minimizing conduction delays. PLoS Comput Biol, 1 (7). e78. ISSN 1553-7358 (Electronic)
Wen, Q., Chklovskii, D. B. (May 2008) A cost-benefit analysis of neuronal morphology. J Neurophysiol, 99 (5). pp. 2320-8.
Weyn-Vanhentenryck, Sebastien M., Mele, A., Yan, Q., Sun, S., Farny, N., Zhang, Z., Xue, C., Herre, M., Silver, Pamela A., Zhang, Michael Q., Krainer, Adrian R., Darnell, Robert B., Zhang, C. (March 2014) HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism. Cell Reports, 6 (6). pp. 1139-1152. ISSN 22111247 (ISSN)
Wu, Yuan-Ting, Bennett, Hannah C, Chon, Uree, Vanselow, Daniel J, Zhang, Qingguang, Muñoz-Castañeda, Rodrigo, Cheng, Keith C, Osten, Pavel, Drew, Patrick J, Kim, Yongsoo (June 2022) Quantitative relationship between cerebrovascular network and neuronal cell types in mice. Cell Reports, 39 (12). p. 110978. ISSN 2211-1247
X
Xia, S., Miyashita, T., Fu, T. F., Lin, W. Y., Wu, C. L., Pyzocha, L., Lin, I. R., Saitoe, M., Tully, T., Chiang, A. S. (April 2005) NMDA receptors mediate olfactory learning and memory in Drosophila. Curr Biol, 15 (7). pp. 603-15. ISSN 0960-9822 (Print)
Xu, J., Cheng, Y., Lai, A., Lv, Z., Campbell, R. A., Yu, H., Luo, C., Shan, B., Xu, L., Xu, X. (May 2015) Autoantibodies Affect Brain Density Reduction in Nonneuropsychiatric Systemic Lupus Erythematosus Patients. J Immunol Res, 2015. p. 920718. ISSN 2314-7156 (Electronic)2314-7156 (Linking)
Y
Yang, Y., Zador, A. M. (October 2012) Differences in sensitivity to neural timing among cortical areas. Journal of Neuroscience, 32 (43). pp. 15142-15147. ISSN 02706474
Yang, Y. T., Wang, C. L., Van Aelst, L. (August 2012) DOCK7 interacts with TACC3 to regulate interkinetic nuclear migration and cortical neurogenesis. Nature Neuroscience, 15 (9). pp. 1201-10. ISSN 1097-6256
Yao, M, Tudi, A, Jiang, T, An, X, Sun, Q, Li, A, Huang, ZJ, Gong, H, Li, X (April 2023) Long-range connectome of pyramidal neurons in the sensorimotor cortex. iScience, 26 (4). p. 106316. ISSN 2589-0042
Z
Zador, A. M. (August 2019) A critique of pure learning and what artificial neural networks can learn from animal brains. Nat Commun, 10 (1). p. 3770. ISSN 2041-1723
Zador, A. M., Dubnau, J., Oyibo, H. K., Zhan, H., Cao, G., Peikon, I. D. (October 2012) Sequencing the Connectome. PLoS Biology, 10 (10). ISSN 1544-9173
Zhang, X., Li, B. (November 2018) A Pathway to Avoiding Threats? Neuron, 100 (4). pp. 780-782. ISSN 0896-6273
Zheng, H. (November 2011) Talk from Hongwu Zheng at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)
Zhu, J. J., Lo, F. S. (March 2000) Recurrent inhibitory circuitry in the deep layers of the rabbit superior colliculus. Journal of Physiology, 523 (3). pp. 731-740. ISSN 0022-3751