Items where Subject is "bioinformatics > genomics and proteomics > genetics & nucleic acid processing > epigenetics
bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > epigenetics"

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Authors | Item Type
Jump to: A | B | C | D | E | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | Z
Number of items at this level: 76.

A

Anderson, K., Koseki, H., Skarnes, W., Shen, M. (2010) MOUSE DEVELOPMENT,GENETICS & GENOMICS. In: 2010 meeting on MOUSE DEVELOPMENT,GENETICS & GENOMICS, October 26–October 30, 2010, Cold Spring Harbor Laboratory.

Austad, S., Campisi, J., Sinclair, D. (2010) MOLECULAR GENETICS OF AGING. In: 2010 Meeting of Molecular Genetics of Aging, September 28–October 2, 2010, Cold Spring Harbor.

B

Bar-Sagi, D., Lees, J., Sherr, C., Weiss, W. (2010) MECHANISMS & MODELS OF CANCER. In: 2010 meeting of MECHANISMS & MODELS OF CANCER, August 17–August 21, 2010, Cold Spring Harbor Laboratory.

Bastow, R., Mylne, J. S., Lister, C., Lippman, Z., Martienssen, R. A., Dean, C. (2004) Vernalization requires epigenetic silencing of FLC by histone methylation. Nature, 427 (6970). pp. 164-7. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Bergmann, J. H., Rodriguez, M. G., Martins, N. M. C., Kimura, H., Kelly, D. A., Masumoto, H., Larionov, V., Jansen, L. E. T., Earnshaw, W. C. (2011) Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore. EMBO Journal, 30 (2). pp. 328-340.

Bernstein, B., Bulyk, M., Bussemaker, H., Walhout, M. (2010) SYSTEMS BIOLOGY: GLOBAL REGULATION OF GENE EXPRESSION. In: 2010 meeting on SYSTEMS BIOLOGY: GLOBAL REGULATION OF GENE EXPRESSION, March 23–March 27, 2010.

Bhagwat, A. S., Vakoc, C. R. (2014) A new bump in the epigenetic landscape. Molecular Cell, 53 (6). pp. 857-8. ISSN 1097-2765

Borges, F., Martienssen, R. A. (2013) Establishing epigenetic variation during genome reprogramming. RNA Biology, 10 (4). pp. 490-4. ISSN 1555-8584 (Electronic)1547-6286 (Linking)

Brauch, H., Deloukas, P., Kroetz, D., Pirmohamed, M. (2010) PHARMACOGENOMICS & PERSONALIZED THERAPY. In: 2010 meeting of PHARMACOGENOMICS & PERSONALIZED THERAPY, November 17–November 21, 2010, Cold Spring Harbor Laboratory.

Brennecke, J., Malone, C. D., Aravin, A. A., Sachidanandam, R., Stark, A., Hannon, G. J. (2008) An epigenetic role for maternally inherited piRNAs in transposon silencing. Science, 322 (5906). pp. 1387-92.

Bronstein, R., Kyle, J., Abraham, A. B., Tsirka, S. E. (2017) Neurogenic to Gliogenic Fate Transition Perturbed by Loss of HMGB2. Front Mol Neurosci, 10. p. 153. ISSN 1662-5099

Byrne, M., Kidney, C., Martienssen, R. (2004) Homeobox genes in Arabidopsis and their epigenetic regulation. Developmental Biology, 271 (2). p. 553. ISSN 0012-1606

Byrne, M. E., Kidner, C. A., Martienssen, R. A. (2003) Plant stem cells: divergent pathways and common themes in shoots and roots. Current Opinion in Genetics & Development, 13 (5). pp. 551-7. ISSN 0959-437X

C

Castel, S. E., Martienssen, R. A. (2013) RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet, 14 (2). pp. 100-12. ISSN 1471-0064 (Electronic)1471-0056 (Linking)

Creasey, K. M., Zhai, J., Borges, F., Van Ex, F., Regulski, M., Meyers, B. C., Martienssen, R. A. (2014) miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature, 508 (7496). pp. 411-415. ISSN 0028-0836

D

Dos Santos, C. O., Dolzhenko, E., Hodges, E., Smith, A. D., Hannon, G. J. (2015) An Epigenetic Memory of Pregnancy in the Mouse Mammary Gland. Cell Reports. ISSN 2211-1247

Duelli, D. M., Hearn, S., Myers, M. P., Lazebnik, Y. (2005) A primate virus generates transformed human cells by fusion. J Cell Biol, 171 (3). pp. 493-503. ISSN 0021-9525 (Print)

E

Eppig, J., Fuller, M., Newmark, P. (2010) GERM CELLS. In: 2010 Meeting of Germ Cells, October 5–October 9, 2010.

Ezhkova, E., Pasolli, H. A., Parker, J. S., Stokes, N., Su, I. H., Hannon, G. J., Tarakhovsky, A., Fuchs, E. (2009) Ezh2 Orchestrates Gene Expression for the Stepwise Differentiation of Tissue-Specific Stem Cells. Cell, 136 (6). pp. 1122-1135. ISSN 0092-8674

Ezhkova, E., Tansey, W. P. (2004) Proteasomal ATPases link ubiquitylation of histone H2B to methylation of histone H3. Mol Cell, 13 (3). pp. 435-42. ISSN 1097-2765 (Print)

G

Gingeras, T. R. (2012) Important lessons from a complex genome. In: 22nd IUBMB & 37th FEBS Congress, Sept 4th-9th 2012, Seville, Spain.

H

Hall, I. M., Grewal, S. I. S. (2003) Structure and function of heterochromatin: implications for epigenetic gene silencing and genome organization. In: RNAi : a guide to gene silencing. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. , pp. 205-232. ISBN 978-087969641-2

Heard, E., Martienssen, R. A. (2014) Transgenerational Epigenetic Inheritance: Myths and Mechanisms. Cell, 157 (1). pp. 95-109. ISSN 0092-8674

Hodges, E., Molaro, A., Dos Santos, C. O., Thekkat, P., Song, Q., Uren, P. J., Park, J. H., Butler, J., Rafii, S., McCombie, W. R., Smith, A. D., Hannon, G. J. (2011) Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment. Molecular Cell, 44 (1). pp. 17-28. ISSN 1097-2765

Hsu, H. C., Stillman, B., Xu, R. M. (2005) Structural basis for origin recognition complex 1 protein-silence information regulator 1 protein interaction in epigenetic silencing. Proc Natl Acad Sci U S A, 102 (24). pp. 8519-24. ISSN 0027-8424 (Print)

I

Irvine, D. V., Goto, D. B., Vaughn, M. W., Nakaseko, Y., McCombie, W. R., Yanagida, M., Martienssen, R. (2009) Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing. Genome research, 19 (6). pp. 1077-83. ISSN 1088-9051 (Print)1088-9051 (Linking)

J

Jones, P. A., Archer, T. K., Baylin, S. B., Beck, S., Berger, S., Bernstein, B. E., Carpten, J. D., Clark, S. J., Costello, J. F., Doerge, R. W., Esteller, M., Feinberg, A. P., Gingeras, T. R., Greally, J. M., Henikoff, S., Herman, J. G., Jackson-Grusby, L., Jenuwein, T., Jirtle, R. L., Kim, Y. J., Laird, P. W., Lim, B., Martienssen, R., Polyak, K., Stunnenberg, H., Tlsty, T. D., Tycko, B., Ushijima, T., Zhu, J., Pirrotta, V., Allis, C. D., Elgin, S. C., Rine, J., Wu, C. (2008) Moving AHEAD with an international human epigenome project. Nature, 454 (7205). pp. 711-715. ISSN 00280836 (ISSN)

Jones, P. A., Martienssen, R. A. (2005) A Blueprint for a Human Epigenome Project: The AACR Human Epigenome Workshop. Cancer Res, 65 (24). pp. 11241-6. ISSN 0008-5472 (Print)

K

Kloc, A., Zaratiegui, M., Nora, E., Martienssen, R. (2008) RNA interference guides histone modification during the S phase of chromosomal replication. Current biology, 18 (7). pp. 490-5. ISSN 0960-9822 (Print)0960-9822 (Linking)

Knott, S. R. V., Peace, J. M., Ostrow, A. Z., Gan, Y., Rex, A. E., Viggiani, C. J., Tavaré, S., Aparicio, O. M. (2012) Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell, 148 (1-2). pp. 99-111. ISSN 00928674 (ISSN)

Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., Ziller, M. J., Amin, V., Whitaker, J. W., Schultz, M. D., Ward, L. D., Sarkar, A., Quon, G., Sandstrom, R. S., Eaton, M. L., Wu, Y. C., Pfenning, A. R., Wang, X., Claussnitzer, M., Liu, Y., Coarfa, C., Harris, R. A., Shoresh, N., Epstein, C. B., Gjoneska, E., Leung, D., Xie, W., Hawkins, R. D., Lister, R., Hong, C., Gascard, P., Mungall, A. J., Moore, R., Chuah, E., Tam, A., Canfield, T. K., Hansen, R. S., Kaul, R., Sabo, P. J., Bansal, M. S., Carles, A., Dixon, J. R., Farh, K. H., Feizi, S., Karlic, R., Kim, A. R., Kulkarni, A., Li, D., Lowdon, R., Elliott, G., Mercer, T. R., Neph, S. J., Onuchic, V., Polak, P., Rajagopal, N., Ray, P., Sallari, R. C., Siebenthall, K. T., Sinnott-Armstrong, N. A., Stevens, M., Thurman, R. E., Wu, J., Zhang, B., Zhou, X., Beaudet, A. E., Boyer, L. A., De Jager, P. L., Farnham, P. J., Fisher, S. J., Haussler, D., Jones, S. J., Li, W., Marra, M. A., McManus, M. T., Sunyaev, S., Thomson, J. A., Tlsty, T. D., Tsai, L. H., Wang, W., Waterland, R. A., Zhang, M. Q., Chadwick, L. H., Bernstein, B. E., Costello, J. F., Ecker, J. R., Hirst, M., Meissner, A., Milosavljevic, A., Ren, B., Stamatoyannopoulos, J. A., Wang, T., Kellis, M. (2015) Integrative analysis of 111 reference human epigenomes. Nature, 518 (7539). pp. 317-30. ISSN 0028-0836

L

Li, F., Martienssen, R. A., Cande, W. Z. (2011) Coordination of DNA replication and histone modification by the Rik1-Dos2 complex. Nature, 475 (7355). 244-U2562. ISSN 0028-0836

Li, Y., Mukherjee, I., Thum, K. E., Tanurdzic, M., Katari, M. S., Obertello, M., Edwards, M. B., McCombie, W. R., Martienssen, R. A., Coruzzi, G. M. (2015) The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology, 16 (1). p. 79. ISSN 1474-7596

Lippman, Z. B. (2004) Transposons, heterochromatin, and epigenetic landscapes in Arabidopsis thaliana. PhD thesis, Cold Spring Harbor Laboratory.

Lodha, M., Marco, C. F., Timmermans, M. C. P. (2008) Genetic and epigenetic regulation of stem cell homeostasis in plants. Cold Spring Harbor Symposia on Quantitative Biology, 73. pp. 243-51. ISSN 00917451 (ISSN)

M

Martienssen, R. (1996) Epigenetic phenomena: Paramutation and gene silencing in plants. Current Biology, 6 (7). pp. 810-813. ISSN 0960-9822

Martienssen, R. A. (1996) Epigenetic Silencing of Mu Transposable Elements in Maize. In: Epigenetic Mechanisms of Gene Regulation. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., p. 593. ISBN 0270-1847

Martienssen, R. A., Colot, V. (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science, 293 (5532). pp. 1070-1074. ISSN 0036-8075

Martienssen, R. A., Kloc, A., Slotkin, R. K., Tanurdzic, M. (2008) Epigenetic inheritance and reprogramming in plants and fission yeast. Cold Spring Harbor symposia on quantitative biology, 73. pp. 265-71. ISSN 1943-4456 (Electronic)0091-7451 (Linking)

Martienssen, Robert A., Doerge, R. W., Colot, Vincent (2005) Epigenomic mapping in Arabidopsis using tiling microarrays. Chromosome Res, 13 (3). pp. 299-308. ISSN 0967-3849 (Print)

May, B. P., Lippman, Z. B., Fang, Y., Spector, D. L., Martienssen, R. A. (2005) Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet, 1 (6). e79. ISSN 1553-7404 (Electronic)

Mills, A. A. (2010) Throwing the cancer switch: reciprocal roles of polycomb and trithorax proteins. Nat Rev Cancer, 10 (10). pp. 669-82. ISSN 1474-1768 (Electronic) 1474-175X (Linking)

Min, J. R., Zhang, X., Cheng, X. D., Grewal, S. I. S., Xu, R. M. (2002) Structure of the SET domain histone lysine methyltransferase Clr4. Nature Structural Biology, 9 (11). pp. 828-832. ISSN 1072-8368

Morikawa, H., Ohkura, N., Vandenbon, A., Itoh, M., Nagao-Sato, S., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R., Standley, D. M., Date, H., Sakaguchi, S., FANTOM Consortium, (2014) Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5289-94. ISSN 0027-8424

Mukhopadhyay, S., Sengupta, A. M. (2013) The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state. PLoS Computational Biology, 9 (7). e1003121. ISSN 1553-7358 (Electronic)1553-734X (Linking)

Mulder, K. W., Wang, X., Escriu, C., Ito, Y., Schwarz, R. F., Gillis, J., Sirokmany, G., Donati, G., Uribe-Lewis, S., Pavlidis, P., Murrell, A., Markowetz, F., Watt, F. M. (2012) Diverse epigenetic strategies interact to control epidermal differentiation. Nature Cell Biology, 14 (7). pp. 753-763. ISSN 1465-7392

N

Nagaraj, V. H., Mukhopadhyay, S., Dayarian, A., Sengupta, A. M. (2014) Breaking an Epigenetic Chromatin Switch: Curious Features of Hysteresis in Saccharomyces cerevisiae Telomeric Silencing. PLoS One, 9 (12). e113516. ISSN 1932-6203

Nakayama, J., Allshire, R. C., Klar, A. J. S., Grewal, S. I. S. (2001) Role for DNA polymerase alpha in epigenetic control of transcriptional silencing in fission yeast. Embo Journal, 20 (11). pp. 2857-2866. ISSN 0261-4189

Nakayama, J., Rice, J. C., Strahl, B. D., Allis, C. D., Grewal, S. I. S. (2001) Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science, 292 (5514). pp. 110-113. ISSN 0036-8075

O

Ordway, J. M., Bedell, J. A., Citek, R. W., Nunberg, A., Garrido, A., Kendall, R., Stevens, J. R., Cao, D., Doerge, R. W., Korshunova, Y., Holemon, H., McPherson, J. D., Lakey, N., Leon, J., Martienssen, R. A., Jeddeloh, J. A. (2006) Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis, 27 (12). pp. 2409-23. ISSN 0143-3334 (Print)0143-3334 (Linking)

Ordway, J. M., Budiman, M. A., Korshunova, Y., Maloney, R. K., Bedell, J. A., Citek, R. W., Bacher, B., Peterson, S., Rohlfing, T., Hall, J., Brown, R., Lakey, N., Doerge, R. W., Martienssen, R. A., Leon, J., McPherson, J. D., Jeddeloh, J. A. (2007) Identification of novel high-frequency DNA methylation changes in breast cancer. PLoS ONE, 2 (12). e1314.

P

Pichugina, T., Sugawara, T., Kaykov, A., Schierding, W., Masuda, K., Uewaki, J., Grand, R. S., Allison, J. R., Martienssen, R. A., Nurse, P., Ueno, M., O'Sullivan, J. M. (2016) A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe. Sci Rep, 6. p. 18757. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

R

Revill, Kate, Wang, Tim, Lachenmayer, Anja, Kojima, Kensuke, Harrington, Andrew, Li, Jinyu, Hoshida, Yujin, Llovet, Josep M., Powers, R. Scott (2013) Genome-wide Methylation Analysis and Epigenetic Unmasking Identify Tumor Suppressor Genes in Hepatocellular Carcinoma. Gastroenterology, 145 (6). pp. 1424-1435. ISSN 0016-5085

Roche, B., Arcangioli, B., Martienssen, R. A. (2017) Transcriptional reprogramming in cellular quiescence. RNA Biol, 14 (7). pp. 843-853. ISSN 1547-6286

Rollins, F. (2011) The genetics and epigenetics of erlotinib resistance in non-small cell lung cancer. PhD thesis, Cold Spring Harbor Laboratory.

S

Sabin, L. R., Delas, M. J., Hannon, G. J. (2013) Dogma derailed: the many influences of RNA on the genome. Molecular Cell, 49 (5). pp. 783-94. ISSN 1097-2765

Schatz, M. C. (2017) Nanopore sequencing meets epigenetics. Nat Methods, 14 (4). pp. 347-348. ISSN 1548-7091

Singer, T., Yordan, C., Martienssen, R. A. (2001) Robertson's Mutator transposons in A-thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes & Development, 15 (5). pp. 591-602. ISSN 0890-9369

Slotkin, R. K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J. D., Feijo, J. A., Martienssen, R. A. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136 (3). pp. 461-72. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Slotkin, R. Keith, Martienssen, Robert (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet, 8 (4). pp. 272-85. ISSN 1471-0056 (Print)

Stewart, D., Stillman, B. (2004) Epigenetics. In: Cold Spring Harbor Symposia on Quantitative Biology LXIX: Epigenetics, Cold Spring Harbor.

Stillman, B., Stewart, D. (2006) Regulatory RNAs. Cold Spring Harb Symp Quant Biol, 71. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

T

Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T. J., Slotkin, R. K., Sosinski, B., Thompson, W. F., Doerge, R. W., Martienssen, R. A. (2008) Epigenomic consequences of immortalized plant cell suspension culture. PLoS biology, 6 (12). pp. 2880-95. ISSN 1545-7885 (Electronic)1544-9173 (Linking)

Turco, G. M., Kajala, K., Kunde-Ramamoorthy, G., Ngan, C. Y., Olson, A., Deshphande, S., Tolkunov, D., Waring, B., Stelpflug, S., Klein, P., Schmutz, J., Kaeppler, S., Ware, D., Wei, C. L., Etchells, J. P., Brady, S. M. (2017) DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor. New Phytol, 214 (3). pp. 1213-1229. ISSN 0028-646x

U

Underwood, Charles J., Henderson, Ian R., Martienssen, Robert A. (2017) Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology, 36. pp. 135-141. ISSN 1369-5266

V

Vakoc, C. R., Garcia-Manero, G., Look, A. T. (2014) Cancer therapy resistance: chasing epigenetics. Nature Medicine, 20 (4). pp. 340-341. ISSN 1078-8956

Vakoc, C. R., Tuveson, D. A. (2017) Untangling the genetics from the epigenetics in pancreatic cancer metastasis. Nat Genet, 49 (3). pp. 323-324. ISSN 1061-4036

Vakoc, C. R., Zuber, J., Lowe, S., Wang, E., Rappaport, A. R., Shi, J. W. (2010) An RNA1 Screen Reveals a Pattern of Addiction to Epigenetic Pathways That Distinguishes MLL AF9 Leukemia From Normal Hematopoietic Cells. Blood, 116 (21). p. 35. ISSN 0006-4971

Vaughn, M. W., Tanurdzic, M., Lippman, Z. B., Jiang, H., Carrasquillo, R., Rabinowicz, P. D., Dedhia, N., McCombie, W. R., Agier, N., Bulski, A., Colot, V., Doerge, R. W., Martienssen, R. A. (2007) Epigenetic natural variation in Arabidopsis thaliana. PLoS Biology, 5 (7). pp. 1617-1629. ISSN 1544-9173

W

Weil, C., Martienssen, R. (2008) Epigenetic interactions between transposons and genes: lessons from plants. Current opinion in genetics & development, 18 (2). pp. 188-92. ISSN 0959-437X (Print)0959-437X (Linking)

Wrzeszczynski, K. O., Varadan, V., Byrnes, J., Lum, E., Kamalakaran, S., Levine, D. A., Dimitrova, N., Zhang, M. Q., Lucito, R. (2011) Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer. PLoS ONE, 6 (12). ISSN 1932-6203

Wrzeszczynski, K. O., Varadan, V., Kamalakaran, S., Levine, D. A., Dimitrova, N., Lucito, R. (2013) Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer. Methods Mol Biol, 1049. pp. 35-51. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Z

Zaratiegui, B. M., Irvine, D. V., Martienssen, R. A. (2007) Noncoding RNAs and gene silencing. Cell, 128 (4). pp. 763-76. ISSN 0092-8674 (Print)

Zaratiegui, M., Martienssen, R. A. (2012) SnapShot: Small RNA-Mediated Epigenetic Modifications. Cell, 151 (2). 456-456 e1. ISSN 1097-4172 (Electronic)0092-8674 (Linking)

Zhang, Z. G., Hayashi, M. K., Merkel, O., Stillman, B., Xu, R. M. (2002) Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing. Embo Journal, 21 (17). pp. 4600-4611. ISSN 0261-4189

Zuber, J., Shi, J., Wang, E., Rappaport, A. R., Herrmann, H., Sison, E. A., Magoon, D., Qi, J., Blatt, K., Wunderlich, M., Taylor, M. J., Johns, C., Chicas, A., Mulloy, J. C., Kogan, S. C., Brown, P., Valent, P., Bradner, J. E., Lowe, S. W., Vakoc, C. R. (2011) RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia. Nature, 478 (7370). pp. 524-528. ISSN 0028-0836

This list was generated on Tue Sep 26 05:00:13 2017 EDT.
CSHL HomeAbout CSHLResearchEducationNews & FeaturesCampus & Public EventsCareersGiving