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Paper

Oviedo, H. V., Bureau, I., Svoboda, K., Zador, A. M. (2010) The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nature Neuroscience, 13 (11). pp. 1413-1420. ISSN 1097-6256

Wood, L., Gray, N. W., Zhou, Z. L., Greenberg, M. E., Shepherd, G. M. G. (2009) Synaptic Circuit Abnormalities of Motor-Frontal Layer 2/3 Pyramidal Neurons in an RNA Interference Model of Methyl-CpG-Binding Protein 2 Deficiency. J Neurosci, 29 (40). pp. 12440-12448. ISSN 0270-6474

Holtmaat, A., Bonhoeffer, T., Chow, D. K., Chuckowree, J., De Paola, V., Hofer, S. B., Hubener, M., Keck, T., Knott, G., Lee, W. C., Mostany, R., Mrsic-Flogel, T. D., Nedivi, E., Portera-Cailliau, C., Svoboda, K., Trachtenberg, J. T., Wilbrecht, L. (2009) Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat Protoc, 4 (8). pp. 1128-44. ISSN 1750-2799 (Electronic)

Zhong, H., Sia, G.-M., Sato, T. R., Gray, N. W., Mao, T., Khuchua, Z., Huganir, R. L., Svoboda, K. (2009) Subcellular Dynamics of Type II PKA in Neurons. Neuron, 62 (3). pp. 363-374.

Hugel, S., Abegg, M., De Paola, V., Caroni, P., Gahwiler, B. H., McKinney, R. A. (2009) Dendritic Spine Morphology Determines Membrane-Associated Protein Exchange between Dendritic Shafts and Spine Heads. Cerebral Cortex, 19 (3). pp. 697-702. ISSN 1047-3211

Zito, K., Scheuss, V., Knott, G., Hill, T., Svoboda, K. (2009) Rapid Functional Maturation of Nascent Dendritic Spines. Neuron, 61 (2). pp. 247-258.

Harvey, C. D., Ehrhardt, A. G., Cellurale, C., Zhong, H., Yasuda, R., Davis, R. J., Svoboda, K. (2008) A genetically encoded fluorescent sensor of ERK activity. Proc Natl Acad Sci U S A, 105 (49). pp. 19264-9.

Holtmaat, A., De Paola, V., Wilbrecht, L., Knott, G. W. (2008) Imaging of experience-dependent structural plasticity in the mouse neocortex in vivo. Behav Brain Res, 192 (1). pp. 20-25.

Harvey, C. D., Yasuda, R., Zhong, H., Svoboda, K. (2008) The spread of ras activity triggered by activation of a single dendritic spine. Science, 321 (5885). pp. 136-40.

Mao, T., O'Connor, D. H., Scheuss, V., Nakai, J., Svoboda, K. (2008) Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. PLoS ONE, 3 (3). e1796.

Huber, D., Petreanu, L., Ghitani, N., Ranade, S., Hromadka, T., Mainen, Z., Svoboda, K. (2008) Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature, 451 (7174). pp. 61-4.

Harvey, C. D., Svoboda, K. (2007) Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature, 450 (7173). pp. 1195-1200. ISSN 0028-0836

Tervo, D. G. R., Karpova, A. Y. (2007) Rapidly inducible, genetically targeted inactivation of neural and synaptic activity in vivo. Current Opinion in Neurobiology, 17 (5). 581-586 .

Maximov, A., Pang, Z. P. P., Tervo, D. G. R., Sudhof, T. C. (2007) Monitoring synaptic transmission in primary neuronal cultures using local extracellular stimulation. Journal of Neuroscience Methods, 161 (1). pp. 75-87. ISSN 0165-0270

Izumo, M., Sato, T. R., Straume, M., Johnson, C. H. (2006) Quantitative analyses of circadian gene expression in mammalian cell cultures. PLoS Computational Biology, 2 (10). pp. 1248-1261. ISSN 1553734X

Jura, N., Scotto-Lavino, E., Sobczyk, A., Bar-Sagi, D. (2006) Differential modification of Ras proteins by ubiquitination. Molecular Cell, 21 (5). pp. 679-687. ISSN 10972765

Yasuda, Ryohei, Harvey, Christopher D., Zhong, Haining, Sobczyk, Aleksander, Van Aelst, Linda, Svoboda, Karel (2006) Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature Neuroscience, 9 (2). pp. 283-291. ISSN 10976256

Karpova, A. Y., Tervo, D. G., Gray, N. W., Svoboda, K. (2005) Rapid and reversible chemical inactivation of synaptic transmission in genetically targeted neurons. Neuron, 48 (5). pp. 727-35. ISSN 0896-6273 (Print)

Chklovskii, D. B., Mel, B. W., Svoboda, K. (2004) Cortical rewiring and information storage. Nature, 431 (7010). pp. 782-788. ISSN 0028-0836

Brecht, M., Fee, M. S., Garaschuk, O., Helmchen, F., Margrie, T. W., Svoboda, K., Osten, P. (2004) Novel approaches to monitor and manipulate single neurons in vivo. Journal of Neuroscience, 24 (42). pp. 9223-9227. ISSN 0270-6474

Shimabukuro, K., Yasuda, R., Muneyuki, E., Hara, K. Y., Kinosita, K., Yoshida, M. (2003) Catalysis and rotation of F-1 motor: Cleavage of ATP at the catalytic site occurs in 1 ms before 40 degrees substep rotation. Proceedings of the National Academy of Sciences of the United States of America, 100 (25). pp. 14731-14736. ISSN 0027-8424

Svoboda, K., Ugurbil, K. (2003) New technologies: probing neurons and their networks - Editorial Overview. Current Opinion in Neurobiology, 13 (5). pp. 568-569. ISSN 0959-4388

Yasuda, R., Sabatini, B. L., Svoboda, K. (2003) Plasticity of calcium channels in dendritic spines. Nature Neuroscience, 6 (9). pp. 948-55. ISSN 1097-6256

Yasuda, R., Masaike, T., Adachi, K., Noji, H., Itoh, H., Kinosita, K. (2003) The ATP-waiting conformation of rotating F1-ATPase revealed by single-pair fluorescence resonance energy transfer. Proceedings of the National Academy of Sciences of the United States of America, 100 (16). pp. 9314-8. ISSN 0027-8424

Egger, V., Svoboda, K., Mainen, Z. F. (2003) Mechanisms of lateral inhibition in the olfactory bulb: Efficiency and modulation of spike-evoked calcium influx into granule cells. Journal of Neuroscience, 23 (20). pp. 7551-7558. ISSN 0270-6474

Shepherd, G. M., Raastad, M. (2003) Axonal varicosity distributions along parallel fibers: a new angle on a cerebellar circuit. Cerebellum, 2 (2). pp. 110-3. ISSN 1473-4222 (Print)

Pologruto, T. A., Sabatini, B. L., Svoboda, K. (2003) ScanImage: flexible software for operating laser scanning microscopes. Biomedical Engineering Online, 2. p. 13. ISSN 1475-925X (Electronic)

Shepherd, G. M., Pologruto, T. A., Svoboda, K. (2003) Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron, 38 (2). pp. 277-89. ISSN 0896-6273 (Print)

Takahashi, T., Svoboda, K., Malinow, R. (2003) Experience strengthening transmission by driving AMPA receptors into synapses. Science, 299 (5612). pp. 1585-1588. ISSN 0036-8075

Svoboda, K., Yasuda, R., Sabatini, B. (2003) Using [Ca2+] imaging to probe synaptic channels at the level of single molecules. Biophysical Journal, 84 (2). 479A-479A. ISSN 0006-3495

Zito, K. (2003) The flip side of synapse elimination. Neuron, 37 (1). pp. 1-2. ISSN 0896-6273 (Print)

Trachtenberg, J. T., Chen, B. E., Knott, G. W., Feng, G. P., Sanes, J. R., Welker, E., Svoboda, K. (2002) Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature, 420 (6917). pp. 788-794. ISSN 0028-0836

Oertner, T. G. (2002) Functional imaging of single synapses in brain slices. Experimental Physiology, 87 (6). pp. 733-736. ISSN 0958-0670

Zito, K., Svoboda, K. (2002) Activity-dependent synaptogenesis in the adult mammalian cortex. Neuron, 35 (6). pp. 1015-1017. ISSN 0896-6273

Oertner, T. G., Svoboda, K. (2002) Subliminal messages in hippocampal pyramidal cells. Journal of Physiology, 543 (2). p. 397. ISSN 0022-3751

Oertner, T. G., Sabatini, B. L., Nimchinsky, E. A., Svoboda, K. (2002) Facilitation at single synapses probed with optical quantal analysis. Nature Neuroscience, 5 (7). pp. 657-664. ISSN 1097-6256

Koh, I. Y. Y., Lindquist, W. B., Zito, K., Nimchinsky, E. A., Svoboda, K. (2002) An image analysis algorithm for dendritic spines. Neural Computation, 14 (6). pp. 1283-1310. ISSN 0899-7667

Shepherd, G. M. G., Raastad, M., Andersen, P. (2002) General and variable features of varicosity spacing along unmyelinated axons in the hippocampus and cerebellum. Proceedings of the National Academy of Sciences of the United States of America, 99 (9). pp. 6340-6345. ISSN 0027-8424

Zito, K., Murthy, V. N. (2002) Dendritic spines. Current Biology, 12 (1). R5-R5. ISSN 0960-9822

Sabatini, B. L., Oertner, T. G., Svoboda, K. (2002) The life cycle of Ca2+ ions in dendritic spines. Neuron, 33 (3). pp. 439-452. ISSN 0896-6273

Nimchinsky, E. A., Sabatini, B. L., Svoboda, K. (2002) Structure and function of dendritic spines. Annual Review of Physiology, 64. pp. 313-353. ISSN 0066-4278

O'Donnell, W. T., Zito, K., Burbach, B., Svoboda, K., Warren, S. T. (2001) Identification of genes differentially expressed in wildtype and Fmr1 knockout mouse barrel cortex. American Journal of Human Genetics, 69 (4). p. 577. ISSN 0002-9297

Stern, E. A., Maravall, M., Svoboda, K. (2001) Rapid development and plasticity of layer 2/3 maps in rat barrel cortex in vivo. Neuron, 31 (2). pp. 305-315. ISSN 0896-6273

Nimchinsky, E. A., Oberlander, A. M., Svoboda, K. (2001) Abnormal development of dendritic spines in FMR1 knock-out mice. Journal of Neuroscience, 21 (14). pp. 5139-5146. ISSN 0270-6474

Hof, P. R., Nimchinsky, E. A., Perl, D. P., Erwin, J. M. (2001) An unusual population of pyramidal neurons in the anterior cingulate cortex of hominids contains the calcium-binding protein calretinin. Neuroscience Letters, 307 (3). pp. 139-142. ISSN 0304-3940

Sabatini, B. L., Maravall, M., Svoboda, K. (2001) Ca2+ signaling in dendritic spines. Current Opinion in Neurobiology, 11 (3). pp. 349-356. ISSN 0959-4388

Oertner, T. G., Brotz, T. M., Borst, A. (2001) Mechanisms of dendritic calcium signaling in fly neurons. Journal of Neurophysiology, 85 (1). pp. 439-447. ISSN 0022-3077

Allman, J. M., Hakeem, A., Erwin, J. M., Nimchinsky, E., Hof, P. (2001) The anterior cingulate cortex - The evolution of an interface between emotion and cognition. Annals of the New York Academy of Sciences, 935. pp. 107-117. ISSN 0077-8923

Sabatini, B. L., Svoboda, K. (2000) Analysis of calcium channels in single spines using optical fluctuation analysis. Nature, 408 (6812). pp. 589-593. ISSN 0028-0836

Chen, B. E., Lendvai, B., Nimchinsky, E. A., Burbach, B., Fox, K., Svoboda, K. (2000) Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo. Learning & Memory, 7 (6). pp. 433-441. ISSN 1072-0502

Cox, C. L., Denk, W., Tank, D. W., Svoboda, K. (2000) Action potentials reliably invade axonal arbors of rat neocortical neurons. Proceedings of the National Academy of Sciences of the United States of America, 97 (17). pp. 9724-9728. ISSN 0027-8424

Lendvai, B., Chen, B., Svoboda, K. (2000) Sensory deprivation induces plasticity of dendritic spines in layer 2/3 of the developing rat barrel cortex in vivo. Journal of Physiology, 526. 63P-63P. ISSN 0022-3751

Maravall, M., Mainen, Z. F., Sabatini, B. L., Svoboda, K. (2000) Estimating intracellular calcium concentrations and buffering without wavelength ratioing. Biophysical Journal, 78 (5). pp. 2655-2667. ISSN 0006-3495

Mittoux, V., Joseph, J. M., Conde, F., Palfi, S., Dautry, C., Poyot, T., Bloch, J., Deglon, N., Ouary, S., Nimchinsky, E. A., Brouillet, E., Hof, P. R., Peschanski, M., Aebischer, P., Hantraye, P. (2000) Restoration of cognitive and motor functions by ciliary neurotrophic factor in a primate model of Huntington's disease. Human Gene Therapy, 11 (8). pp. 1177-1187. ISSN 1043-0342

Lendvai, B., Stern, E. A., Chen, B., Svoboda, K. (2000) Experience-dependent plasticity of dendritic spines in the developing rat barrel cortex in vivo. Nature, 404 (6780). pp. 876-881. ISSN 0028-0836

Helmchen, F., Svoboda, K., Denk, W., Tank, D. W. (1999) In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons. Nature Neuroscience, 2 (11). pp. 989-96. ISSN 1097-6256

Shi, S. H., Hayashi, Y., Petralia, R. S., Zaman, S. H., Wenthold, R. J., Svoboda, K., Malinow, R. (1999) Rapid spine delivery and redistribution of AMPA receptors after synaptic NMDA receptor activation. Science, 284 (5421). pp. 1811-6. ISSN 0036-8075 (Print)

Mainen, Z. F., Maletic-Savatic, M., Shi, S. H., Hayashi, Y., Malinow, R., Svoboda, K. (1999) Two-photon imaging in living brain slices. Methods, 18 (2). pp. 231-39. ISSN 1046-2023 (Print)

Mainen, Z. F., Malinow, R., Svoboda, K. (1999) Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated. Nature, 399 (6732). pp. 151-5. ISSN 0028-0836 (Print)

Maletic-Savatic, M., Malinow, R., Svoboda, K. (1999) Rapid dendritic morphogenesis in CA1 hippocampal dendrites induced by synaptic activity. Science, 283 (5409). pp. 1923-7. ISSN 0036-8075 (Print)

Svoboda, K., Mainen, Z. F. (1999) Synaptic [Ca2+]: intracellular stores spill their guts. Neuron, 22 (3). pp. 427-30. ISSN 0896-6273 (Print)

Svoboda, K., Helmchen, F., Denk, W., Tank, D. W. (1999) Spread of dendritic excitation in layer 2/3 pyramidal neurons in rat barrel cortex in vivo. Nature Neuroscience, 2 (1). pp. 65-73. ISSN 1097-6256 (Print)

Svoboda, K. (1998) Shining light on spiny matters. Nature Neuroscience, 1 (2). pp. 93-4. ISSN 1097-6256

Denk, W., Svoboda, K. (1997) Photon upmanship: why multiphoton imaging is more than a gimmick. Neuron, 18 (3). pp. 351-7. ISSN 0896-6273

Svoboda, K., Denk, W., Kleinfeld, D., Tank, D. W. (1997) In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature, 385 (6612). pp. 161-5. ISSN 0028-0836

Svoboda, K. (1996) New insights into the workings of the ultimate swimming machine. Biophysical Journal, 71 (2). pp. 539-40. ISSN 0006-3495

Denk, W., Yuste, R., Svoboda, K., Tank, D. W. (1996) Imaging calcium dynamics in dendritic spines. Curr Opin Neurobiol, 6 (3). pp. 372-8. ISSN 0959-4388

Svoboda, K., Tank, D. W., Denk, W. (1996) Direct measurement of coupling between dendritic spines and shafts. Science, 272 (5262). pp. 716-9. ISSN 0036-8075

Yin, Hong, Wang, Michelle D., Svoboda, Karel, Landick, Robert, Block, Steven M., Gelles, Jeff (1995) Transcription against an applied force. Science, 270 (5242). pp. 1653-7. ISSN 0036-8075

Svoboda, K., Block, S. M. (1994) Force and velocity measured for single kinesin molecules. Cell, 77 (5). pp. 773-84. ISSN 0092-8674

Svoboda, K., Block, S. M. (1994) Biological applications of optical forces. Annu Rev Biophys Biomol Struct, 23. pp. 247-85. ISSN 1056-8700

Svoboda, Karel, Schmidt, Christoph F., Schnapp, Bruce J., Block, Steven M. (1993) Direct observation of kinesin stepping by optical trapping interferometry. Nature, 365 (6448). pp. 721-7. ISSN 0028-0836

Schmidt, Christoph F., Svoboda, Karel, Lei, Ning, Petsche, Irena B., Berman, Lonny E., Safinya, Cyrus R., Grest, Gary S. (1993) Existence of a flat phase in red cell membrane skeletons. Science, 259 (5097). pp. 952-5. ISSN 0036-8075

Svoboda, K., Schmidt, C. F., Branton, D., Block, S. M. (1992) Conformation and elasticity of the isolated red blood cell membrane skeleton. Biophys J, 63 (3). pp. 784-93. ISSN 0006-3495 (Print)0006-3495 (Linking)

Book Section

Chen, B., Trachtenberg, J.T., Holtmaat, A. J., Svoboda, K. (2005) Long-term, high-resolution imaging in the neocortex in vivo. In: Live cell imaging: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 423-424. ISBN 0879696826

Svoboda, K., Tank, D. W., Stepnoski, R. A. , Denk, W. (2000) Two-photon Imaging of Neuronal Function in the Neocortex In Vivo. In: Imaging neurons: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0-87969-542-0

Thesis

Harvey, C. D. (2008) Dynamics of Plasticity and Signaling at Individual Synapses. PhD thesis, Cold Spring Harbor Laboratory.

Tervo, D. G. (2007) Development of Molecular Systems for the Inactivation of Synaptic Transmission. PhD thesis, Cold Spring Harbor Laboratory.

This list was generated on Sun Oct 22 02:27:38 2017 EDT.
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