Items where Community is "Northwell Health"

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Number of items at this level: 83.

Bunk, Paul, Ergin, Ilgin, Maher, Timothy, Shah, Vyom, Bonney, Julia R, Kumar, Lokesh BSS, Chung, Charlie, Wellhausen, Nils, Moresco, Philip, Shao, Sarah, Habel, Jill, Mandati, Vinay, Rubino, Rachel, Rivadeneira, David E, Wilkinson, John E, Herrero, Laura, Westcott, Peter MK, Weinberg, Samuel E, Gill, Saar I, Agar, Nathalie YR, Beyaz, Semir (October 2026) Compartment-specific PPARδ activity controls the outcome of cancer-immune cell competition and immunotherapy efficacy. Nature Immunology. ISSN 1529-2908

Castillon, Venise Jan, Xie, Amy X, Boscenco, Sonia, Tse, Ethan, Ruthen, Neil, Wang, Jamie, Bakouny, Ziad, Waters, Michele, Fu, Chenlian, Fong, Christopher, Saleh, Mustafa, Baroud, Tarek, Park, Wungki, Shah, Urvi A, Hakimi, A Ari, Iyengar, Puneeth, Jee, Justin, White, Eileen, Gusev, Alexander, Janowitz, Tobias, Goncalves, Marcus D, Reznik, Ed (October 2026) A health-system-scale, episode-resolved multimodal atlas of cancer cachexia. Nature Medicine. ISSN 1078-8956

Liu, Ying, Janowitz, Tobias (October 2026) Activity over Abundance: ADAMTSL4 Unlocks Latent TGFβ1 in Cancer Cachexia. Cancer Discovery, 16 (10). pp. 1964-1966. ISSN 2159-8274

Dantas, Ezequiel, Shi, Yushu, Kim, Jeshua, Murthy, Anirudh, Emmanuelli, Alexander, Li, Shiri, Perrier, Tiffany, Ahmed, Tanvir, Nathoo, Isaac, Echeverria, Carolina E, Wang, Yingzhao, Abdallah, Omar, Janowitz, Tobias, Hurd, Maurice A, Suzuki-Kemuriyama, Noriko, Ebbeling, Cara B, Allison, David B, Hopkins, Benjamin D, Cantley, Lewis C, Ludwig, David S, Goncalves, Marcus D (September 2026) Effects of refined carbohydrates on immune markers after weight loss on a very-low-carbohydrate diet: A randomized controlled feeding trial. Cell Press Blue. p. 100122. ISSN 3051-3839 (Public Dataset)

Meyer, Hannah V, Dasgupta, Sanjoy, Banerjee, Amitava, Lin, Yong, Prabakar, Rishvanth K, Chapin, Sarah R, Kingsford, Carl, Navlakha, Saket (August 2026) Central T cell tolerance from sparse peptide sampling. Science Advances, 12 (34). eaeg8240. ISSN 2375-2548 (Public Dataset)

ElHarouni, Dina, Al-Jazrawe, Mushriq, Choi, Seongmin, Dede, Merve, Hinoue, Toshinori, Misek, Sean A, Noh, Heeju, Zanella, Luca, Tseng, Yuen-Yi, Francies, Hayley E, Plenker, Dennis, Kyi, Cindy W, Perez-Mayoral, Julyann, Stine, Megan J, Tonsing-Carter, Eva, Agarwal, Rachana, Zenklusen, Jean Claude, Clinton, James M, Shelton, Jennifer M, Chu, Timothy R, Hooper, William F, Loinaz, Xavi, Keskula, Paula, Tagle, Jordan, Kuhlers, Peyton C, Tercan, Bahar, Boj, Sylvia F, Vasciaveo, Alessandro, Tomassoni, Lorenzo, Crawford, James M, Walsh, Shawna, Sinai, Claire, Bhatia, Sonam, Sridevi, Priya, Patel, Hardik, Cerone, Maria Antonietta, HCMI Network, Ellrott, Kyle, Kuo, Calvin J, Elemento, Olivier, Beyaz, Semir, Corbo, Vincenzo, Spector, David L, Beroukhim, Rameen, Ferguson, Martin L, Cherniack, Andrew D, Laird, Peter W, Robine, Nicolas, McPherson, Andrew, Hoadley, Katherine A, Garnett, Mathew J, Tuveson, David A, Califano, Andrea, Spellman, Paul T, Ligon, Keith L, Gerhard, Daniela S, Staudt, Louis M, Boehm, Jesse S (August 2026) A compendium of next-generation patient-derived models for diverse cancers. Nature. ISSN 0028-0836

Seay, Kieran, Hare, Maia, Cao, Jin, Katcher, Arielle, Akerman, Meredith, Beyaz, Semir, Goldberg, Gary L, Frimer, Marina (August 2026) Response to progestin-based therapy in endometrial intraepithelial neoplasia: An exploratory biomarker study. Gynecologic Oncology Reports, 66. p. 102134. ISSN 2352-5789

Yang, Xiaochun, Steffani, Marcella, Nadella, Sandeep, Sheppard, Dean, Rieder, Florian, Rinkevich, Yuval, Kramann, Rafael, Tuveson, David A, Schwabe, Robert F (July 2026) Fibroblasts: a diverse population of cells balancing homeostasis, wound healing, regeneration, inflammation, fibrosis, and cancer across organs. JCI insight, 11 (13). ISSN 2379-3708

Cross, Michael, Kotschi, Stefan, Wu, Warren, Luciano-Mateo, Fedra, Kwon, Young-Yon, Dantas, Ezequiel, Niazi, Taha, Chen, Shijia, Rashidfarrokhi, Ali, Pillai, Ray, Sanford, Jack, Kim, Jeshua, Hsiang, Juliya, Gamallo-Lana, Begona, Mar, Adam C, Hao, Yuan, Rajalingam, Sahith, Huang, Annie, Shan, Jackie, Issa, Habon A, Gomez, Maria, Wang, Alice R, Zhao, Xiang, Janowitz, Tobias, White, Eileen, Liu, Yin, Wong, Kwok-Kin, Segal, Leopoldo N, Hui, Sheng, Goncalves, Marcus D, Froemke, Robert C, Papagiannakopoulos, Thales (July 2026) A dietary switch promotes sensory neuron-dependent cancer-associated cachexia. Science, 393 (6806). pp. 90-97. ISSN 0036-8075

Parikh, Chaitanya N, DeMarco, Kelly D, Bhalerao, Nikita, Giwa, Hadiya K, Kane, Griffin I, Dinnell, Ronnie W, Ma, Boyang, Mori, Haruka, Brassil, Meghan L, Murphy, Katherine C, Zhao, Zhen, Johnson, Calvin, Ramani, Shriram, Zhou, Lin, Chibaya, Loretah, Qiao, Youwei, Hu, Kai, Zhu, Lihua Julie, Lewis, Brian C, Xue, Wen, Pitarresi, Jason R, Atukorale, Prabhani U, Ruscetti, Marcus (June 2026) Multiplexed cytokine and antigen mRNA administration generates durable anti-tumor immunity against pancreatic cancer. Nature Communications, 17 (1). ISSN 2041-1723

Venkataramani, Prabhadevi, Elkayam, Elad, Garg, Ankur, Cheng, Kai Fan, Altiti, Ahmad, He, Mingzhu, Thakur, Khushabu, Michalopoulou, Evdokia, Gonzalez, Camila, Felice, Christy, Van Aelst, Linda, Pappin, Darryl, Joshua-Tor, Leemor, Al-Abed, Yousef, Tonks, Nicholas K (June 2026) Small-molecule inhibitors of the protein kinase DYRK as potential therapeutic candidates in cancer. Cell Chemical Biology, 33 (6). 810-822.e7. ISSN 2451-9456 (Public Dataset)

Gingeras, Thomas R (June 2026) The Topological Regulatory Logic of noncoding RNA-mediated gene expression. Genome Research. ISSN 1088-9051

Kleeman, Sam O, Riazat-Kesh, Yosef, Carvajal, Richard, Marmarelis, Melina E, Schadendorf, Dirk, Sharon, Elad, Othus, Megan, Robert, Caroline, Skoulidis, Ferdinandos, Izar, Benjamin, Maki, Robert G, Janowitz, Tobias (June 2026) Cancer chemo-immunotherapy: time will tell. Cancer immunology research. OF1-OF4. ISSN 2326-6066

Callaway, Mackenzie K, Comfort, Lizelle, Anandan, Dhivyaa, Sharma, Ruby, Florez, Narjust, Lyons, Traci R, Germain, Doris, Cho, Kathleen R, Rochelson, Burton L, Bonanno, Clarissa, Oktay, Kutluk, Roychoudhury, Sudarshana, O’donnell, Eileen, Barakat, Richard, Marquardt, Joanne, Bianchi, Diana W, Cardonick, Elyce, Norton, Larry, Partridge, Ann H, Domchek, Susan M, Borges, Virginia F, Amant, Frédéric, Dos Santos, Camila O (May 2026) Cancer During Pregnancy: Navigating Clinical and Research Challenges. Current Oncology, 33 (5). p. 296. ISSN 1718-7729

Reyes, José, Del Priore, Isabella, Chaikovsky, Andrea C, Pasnuri, Nikhita, Elhossiny, Ahmed M, Park, Jin, Weiler, Philipp, Krause, Tobias, Moorman, Andrew, Snopkowski, Catherine, Takizawa, Meril, Burdziak, Cassandra, Ratnayeke, Nalin, Masilionis, Ignas, Ho, Yu-Jui, Chaligné, Ronan, Romesser, Paul B, Filliol, Aveline, Nawy, Tal, Morris, John P, Zhao, Zhen, Pasca Di Magliano, Marina, Alonso-Curbelo, Direna, Pe'er, Dana, Lowe, Scott W (May 2026) Oncogenic and tumor-suppressive forces converge on a progenitor niche at the benign-to-malignant transition. Cell, 189 (10). 2875-2897.e53. ISSN 0092-8674

Kouassi, Fatim M, Patel, Hardik, Karnoub, Elias-Ramzey, Tsang, Caitlin F, Hohenleitner, Julien, Basturk, Olca, Budagavi, Deepthi, Moza, Madonna, Balogun, Fiyinfolu, Habowski, Amber N, Tuveson, David A, Yu, Kenneth H (April 2026) Brain metastasis from KRAS wild-type pancreatic cancer and organoid correlates: a case report. Journal of Gastrointestinal Oncology, 17 (2). p. 101. ISSN 2078-6891

Kleeman, Sam O, Michalski, Kevin, Zhao, Xiang, Steigerwald, Ruben, Ferrer, Miriam, Levett, Llewelyn, Ertel, Ethan, Schultz, Austin, Simorowski, Noriko, Moody, Pamela, Wee, Tse-Luen, Valente, Cristina, Fox, Sharon, Makuch, Mateusz, Thomsen, Selina, Harrison, Ruby, Regan, Claire, Preall, Jonathan, Gao, Qing, Thomas, Dennis, Habel, Jill, Rubino, Rachel, Irani, Sarosh, Furukawa, Hiro, Janowitz, Tobias (March 2026) Ectopic NMDAR expression in cancer unmasks germline-encoded autoimmunity. Nature. ISSN 0028-0836 (Public Dataset)

Karakaya, Eda, Berber, Burak, Eskiocak, Onur, Edwards, Jazlyn, Barker, Randy Bent, Jamil, Sarah, Li, Weiguo, Abdul, Yasir, Ericsson, Maria, Stein, Thor, McKee, Ann, Ergul, Adviye, Beyaz, Semir, Albayram, Onder (March 2026) Eicosapentaenoic acid reprograms cerebrovascular metabolism and impairs repair after brain injury, with relevance to chronic traumatic encephalopathy. Cell Reports, 45 (4). p. 117135. ISSN 2211-1247

Huang, Jing, Zhu, Xin-Hua, Trotman, Lloyd C, Tsao, Che-Kai (March 2026) The Role of Gut Microbiome in Prostate Cancer: Current Evidence and Emerging Opportunities. Cancers, 18 (6). p. 998. ISSN 2072-6694

Bencze, Gyula, Venkataramani, Prabhadevi, Elkayam, Elad, Rivera, Keith D, Garg, Ankur, Szabadakai, Istvan, Orfi, Laszlo, Joshua-Tor, Leemor, Pappin, Darryl J, Tonks, Nicholas K (March 2026) Identification and Validation of an Inhibitor of the Protein Kinases PIM and DYRK. Journal of Medicinal Chemistry, 69 (7). pp. 7920-7932. ISSN 0022-2623 (Public Dataset)

Gawdi, Rohin, Hohenleitner, Julien T, Weiss, Matthew J (March 2026) Reassessing Medicaid expansion analyses in the National Cancer Database: the perils of misclassified state expansion status. Journal of Gastrointestinal Surgery, 30 (3). p. 102343. ISSN 1091-255X

King, Daniel A, John, Kristen M, Tenner, Joseph, Nadella, Sandeep, Zavadsky, Tiffany, Carvino, Anthony, Khan, Shama, Croocks, Rolando, McEvoy, Tara, Beyer, Kristen, Mercieca, Rita, Valente, Cristina, Bingham, Bernadette, Cohn, Elizabeth G, Habowski, Amber N, Tuveson, David A, Barish, Matthew A, Carvajal, Richard (February 2026) Computationally Assisted Patient Finding for Navigation to Optimize Pancreatic Cancer Care Access. Oncologist. oyag037. ISSN 1083-7159

Chung, Charlie, Yueh, Brian, Subhash, Santhilal, Eskiocak, Onur, Nizam, Aaron, Viola, Marissa, Belleau, Pascal, Kredentser, Ariel, Kapedani, Arisa, Krasnitz, Alexander, Simon, Ken, Meier, Werner, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (February 2026) Ancestrally diverse autologous patient-derived organoid - immune cell co-culture platform for addressing immunotherapeutic outcome disparities in high-grade endometrial cancer. Cancer Research Communications. ISSN 2767-9764

Tsang, Caitlin F, Patel, Hardik, Kouassi, Fatim M, Khandakar, Binny, St Surin, Luce G, Rouse, James A, Utama, Raditya, Budagavi, Deepthi, Hohenleitner, Julien T, Chunton, Adeline, Zhao, Zhen, Fox, Sharon S, Valente, Cristina C, Weiss, Matthew J, Rishi, Arvind, King, Daniel A, Crawford, James M, Habowski, Amber N, Tuveson, David A (January 2026) Utility of pancreatic tumor scrapings for organoid development and precision medicine strategies. Journal of Pathology. ISSN 0022-3417 (Public Dataset)

Aggarwal, D, Wee, TL, Satpathy, S, Russo, S, Spector, DL (December 2025) Longitudinal tracking of MALAT1 level over a breast cancer patient's course of treatment and disease progression. Molecular Therapy Oncology, 33 (4). p. 201070. ISSN 2950-3299 (In Press)

Eskiocak, Onur, Gewolb, Joseph, Shah, Vyom, Rouse, James A, Chowdhury, Saria, Akyildiz, Erdogan O, Fernández-Maestre, Inés, Boyer, Jacob A, Filliol, Aveline, Harris, Alexander S, Utama, Raditya, Guo, Guangran, Castro-Hernández, Carolina, Nnuji-John, Emmanuella, Chung, Charlie, Anderson, Arianna, Flowers, Sara, Habel, Jill, Romesser, Paul B, Levine, Ross L, Lowe, Scott W, Sadelain, Michel, Beyaz, Semir, Amor, Corina (November 2025) Anti-uPAR CAR T cells reverse and prevent aging-associated defects in intestinal regeneration and fitness. Nature Aging. ISSN 2662-8465 (Public Dataset)

Alpsoy, Aktan, Ipsaro, Jonathan J, Skopelitis, Damianos, Pal, Sujay, Chung, Frank S, Carpenter, Shannon, Desmarais, John J, Wu, Xiaoli S, Chang, Kenneth, DiMare, Matthew T, Harten, Erin, Bergman, Staci, Kinney, Justin B, Engelman, Jeffrey A, Bhang, Hyo-Eun C, Joshua-Tor, Leemor, Vakoc, Christopher R (November 2025) Structural basis of DNA-dependent coactivator recruitment by the tuft cell master regulator POU2F3. Cell Reports. p. 116572. ISSN 2211-1247 (Public Dataset)

Cunniff, Patrick J, Sivetz, Nicole, Skopelitis, Damianos, Klingbeil, Olaf, Toobian, Daniel, Maia-Silva, Diogo, Egeblad, Mikala, Vakoc, Christopher R (November 2025) KLF5 enables dichotomous lineage programs in pancreatic cancer via the AAA+ ATPase coactivators RUVBL1 and RUVBL2. Nature Communications, 16 (1). p. 9996. ISSN 2041-1723 (Public Dataset)

Panepinto, Maria C, Minicozzi, Francesca, Cifani, Paolo (October 2025) High Dynamic Range Peptide Mass Spectrometry Using Segmented Precursor Ion Accumulation. Analytical Chemistry. ISSN 0003-2700

Ciccone, Michael F, Anandan, Dhivyaa, Chatterjee, Deeptiman, Chen, Chen, Trousdell, Marygrace C, Anderson, Rebecca, Lewis, Steven M, Callaway, Mackenzie K, Zhao, Chris Z, Hanasoge Somasundara, Amritha Varshini, Russo, Suzanne, Yang, Shih-Ting, Zhao, Yixin, Ostrander, Julie, Wilkinson, John E, Pomerantz, William CK, Siepel, Adam, Spector, David L, Tollkuhn, Jessica, Dos Santos, Camila O (October 2025) Loss of BPTF restores estrogen response and suppresses metastasis of mammary tumors. Nature Communications, 16 (1). p. 9168. ISSN 2041-1723 (Public Dataset)

Li, Siran, Alexander, Joan, Kendall, Jude, Andrews, Peter, Rose, Elizabeth, Orjuela, Hope, Park, Sarah, Podszus, Craig, Shanley, Liam, Ranade, Nissim, Morris, Patrick, Stauder, Danielle, Bradford, Daniel, Laster, Zachary, Ronemus, Michael, Rishi, Arvind, Frimer, Marina, Ma, Rong, Donoho, David L, Goldberg, Gary L, Wigler, Michael, Levy, Dan (September 2025) Hybrid BAG-seq: DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples. Genome Biology, 26 (1). p. 314. ISSN 1474-760X (Public Dataset)

Lewis, Steven M, Tellez-Perez, Lucia, Henry, Samantha, Zheng, Xingyu, Navlakha, Saket, Dos Santos, Camila O (September 2025) MaGNet: A Network-Based Method for Quantitative Analysis of the Mammary Ductal Tree in Developing Female Mice. Journal of Mammary Gland Biology and Neoplasia, 30 (1). p. 13. ISSN 1573-7039

Knox, Jennifer J, O'Kane, Grainne, King, Daniel, Laheru, Daniel, Habowski, Amber N, Yu, Kenneth, Perez, Kimberly, Aguirre, Andrew J, Coyne, Zachary, Harvey, Harry, McLaughlin, Ronan A, Jang, Raymond W, Grant, Robert C, Elimova, Elena C, Renouf, Daniel J, Fischer, Sandra, Duan, Kai, Ramotar, Stephanie, Jang, Gun Ho, Zhang, Amy, Devoe, Craig E, Singh, Harshabad, Pishvaian, Michael J, Froeling, Fieke EM, Saif, Wasif, O'Reilly, Eileen M, Tsang, Erica S, Wolpin, Brian M, Wilson, Julie M, Dodd, Anna, Pugh, Trevor J, Ye, Xiang Y, Gallinger, Steven, Tuveson, David A, Notta, Faiyaz, Jaffee, Elizabeth M (September 2025) PASS-01: Randomized Phase II Trial of Modified FOLFIRINOX Versus Gemcitabine/Nab-Paclitaxel and Molecular Correlatives for Previously Untreated Metastatic Pancreatic Cancer. Journal of Clinical Oncology. JCO2500436. ISSN 0732-183X

Barbi, Mali, Lee, Chung-Shien, Rahman, Husneara, Cheng, Kit Ling, John, Veena S (September 2025) Toxicity and efficacy of lenvatinib plus pembrolizumab in advanced endometrial cancer: a real-world retrospective analysis. Frontiers in Oncology, 15. p. 1622253. ISSN 2234-943X

Fechtmeyer, Phoebe H, Martinez, Cameron, Yeh, Johannes T-H (September 2025) Temporal and Spatial Characterization of CUL3KLHL20-Driven Targeted Degradation of BET Family BRD Proteins by the Macrocycle-Based Degrader BTR2004. ACS Chemical Biology. ISSN 1554-8929

Janowitz, Tobias (September 2025) Of hope from fading will: Interoceptive signaling and the behavioral biology of cachexia. Neuron, 113 (17). pp. 2729-2733. ISSN 0896-6273

Wang, Zifei, Homer, Joshua A, Zegeye, Elias K, Dada, Lucas, Wolan, Dennis W, Kitamura, Seiya, Moses, John E (August 2025) Diversity oriented clicking for modular synthesis. Nature Reviews Methods Primers, 5 (1). ISSN 2662-8449

Thakir, Tuba Mansoor, Wang, Alice R, Decker-Farrell, Amanda R, Ferrer, Miriam, Guin, Rohini N, Kleeman, Sam, Levett, Llewelyn, Zhao, Xiang, Janowitz, Tobias (August 2025) Cancer therapy and cachexia. Journal of Clinical Investigation, 135 (15). ISSN 1558-8238

Adrover, Jose M, Han, Xiao, Sun, Lijuan, Fujii, Takeo, Sivetz, Nicole, Daßler-Plenker, Juliane, Evans, Clary, Peters, Jessica, He, Xue-Yan, Cannon, Courtney D, Ho, Won Jin, Raptis, George, Powers, R Scott, Egeblad, Mikala (July 2025) Neutrophils drive vascular occlusion, tumour necrosis and metastasis. Nature. ISSN 0028-0836 (Public Dataset)

Xu, Wenbo, Bhatia, Sonam, Sahin, Yunus, Spector, David L (June 2025) LINC01235 is an Upstream Regulator of the NFIB Gene and the NOTCH Pathway in Triple Negative Breast Cancer. Molecular Cancer Research. ISSN 1541-7786

Koh, Kexin, Scott, Rachel, Cespedes Feliciano, Elizabeth M, Janowitz, Tobias, Goncalves, Marcus D, White, Eileen P, Laird, Barry JA, Haase, Kerstin, Jamal-Hanjani, Mariam (April 2025) Cancer-Associated Cachexia: Bridging Clinical Findings with Mechanistic Insights in Human Studies. Cancer Discovery. OF1-OF26. ISSN 2159-8290

Bhowmick, Krishanu, Yang, Xiaochun, Mohammad, Taj, Xiang, Xiyan, Molmenti, Christine L, Mishra, Bibhuti, Dasarathy, Srinivasan, Krainer, Adrian R, Hassan, Md Imtaiyaz, Crandall, Keith A, Mishra, Lopa (April 2025) Microbial metabolite ammonia disrupts TGF-β signaling to promote colon cancer. Journal of Biological Chemistry, 301 (6). p. 108559. ISSN 0021-9258 (Public Dataset)

Li, Katrina, Mathew, Brandon, Saldanha, Ethan, Ghosh, Puja, Krainer, Adrian R, Dasarathy, Srinivasan, Huang, Hai, Xiang, Xiyan, Mishra, Lopa (April 2025) New insights into biomarkers and risk stratification to predict hepatocellular cancer. Molecular Medicine, 31 (1). p. 152. ISSN 1528-3658

Shakiba, Mojdeh, Tuveson, David A (April 2025) Macrophages and fibroblasts as regulators of the immune response in pancreatic cancer. Nature Immunology. ISSN 1529-2908

Tonelli, Claudia, Deschênes, Astrid, Gaeth, Victoria A, Jensen, Amanda, Vithlani, Nandan, Yao, Melissa A, Zhao, Zhen, Park, Youngkyu, Tuveson, David A (April 2025) FGFR2 Abrogation Intercepts Pancreatic Ductal Adenocarcinoma Development. Cancer Research. ISSN 0008-5472 (Public Dataset)

Zhou, Edward, Yang, Jung-In, Habowski, Amber N, Deschênes, Astrid, Belleau, Pascal, Ha, Taehoon, Tzanavaris, Chris J, Boyd, Jeff, Hollweg, Christopher A, Zhu, Xinhua, Tuveson, David A, King, Daniel A (April 2025) GATA6 Amplification Is Associated With Improved Survival in TP53-Mutated Unresectable Pancreatic Cancer. Pancreas, 54 (4). e303-e309. ISSN 1536-4828

Liu, Ying, Dantas, Ezequiel, Ferrer, Miriam, Miao, Ting, Qadiri, Mujeeb, Liu, Yifang, Comjean, Aram, Davidson, Emma E, Perrier, Tiffany, Ahmed, Tanvir, Hu, Yanhui, Goncalves, Marcus D, Janowitz, Tobias, Perrimon, Norbert (April 2025) Hepatic gluconeogenesis and PDK3 upregulation drive cancer cachexia in flies and mice. Nature Metabolism, 7 (4). pp. 823-841. ISSN 2522-5812 (Public Dataset)

Ferguson, L Paige, Tuveson, David A (April 2025) Road Map to Defeat Pancreatic Cancer. Annual Review of Cancer Biology, 9 (1). pp. 1-20. ISSN 2472-3428

Battison, Alexandria S, Merrill, Joseph R, Borniger, Jeremy C, Lyons, Scott K (March 2025) The regulation of reporter transgene expression for diverse biological imaging applications. npj Imaging, 3 (1). ISSN 2948-197X

Voss, Dillon M, Kral, Alexander J, Sim, GeunYoung, Utama, Raditya, Lin, Kuan-Ting, Cizmeciyan, Chris, Schafer, Balazs, Cunniff, Patrick J, Vakoc, Christopher R, Caruthers, Marvin H, Mishra, Lopa, Krainer, Adrian R (February 2025) PKM splice-switching ASOs induce upregulation of dual-specificity phosphatases and dephosphorylation of ERK1/2 in hepatocellular carcinoma. Journal of Biological Chemistry. p. 108345. ISSN 0021-9258

Fuller, Sophia, Alexeeff, Stacey, Caan, Bette, Dasilva Goncalves, Marcus, Dunne, Richard F, Janowitz, Tobias, Jamal-Hanjani, Mariam, Sundaresan, Tilak K, Cespedes Feliciano, Elizabeth M (February 2025) Early identification of weight loss trajectories in advanced cancer and associations with survival. Journal of the National Cancer Institute. djaf030. ISSN 0027-8874

Wang, Z, Vishwakarma, DS, Sun, S, Huang, Q, Pati, S, Johnson, RM, Rufrano, MR, Gembicky, M, Homer, JA, Moses, JE (January 2025) Phosphorus Fluoride Exchange (PFEx) Click Chemistry: 2-Substituted-Alkynyl-1-Cyclotriphosphazene (SACP) Hubs for Diversity Oriented Clicking. Advanced Synthesis and Catalysis. ISSN 1615-4150

Liang, Heng, Fisher, Matthew L, Wu, Caizhi, Ballon, Carlos, Sun, Xueqin, Mills, Alea A (November 2024) PRMT5/WDR77 Enhances the Proliferation of Squamous Cell Carcinoma via the ΔNp63α-p21 Axis. Cancers, 16 (22). p. 3789. ISSN 2072-6694 (Public Dataset)

Swamynathan, Manojit M, Kuang, Shan, Watrud, Kaitlin E, Doherty, Mary R, Gineste, Charlotte, Mathew, Grinu, Gong, Grace Q, Cox, Hilary, Cheng, Eileen, Reiss, David, Kendall, Jude, Ghosh, Diya, Reczek, Colleen R, Zhao, Xiang, Herzka, Tali, Špokaitė, Saulė, Dessus, Antoine N, Kim, Seung Tea, Klingbeil, Olaf, Liu, Juan, Nowak, Dawid G, Alsudani, Habeeb, Wee, Tse-Luen, Park, Youngkyu, Minicozzi, Francesca, Rivera, Keith, Almeida, Ana S, Chang, Kenneth, Chakrabarty, Ram P, Wilkinson, John E, Gimotty, Phyllis A, Diermeier, Sarah D, Egeblad, Mikala, Vakoc, Christopher R, Locasale, Jason W, Chandel, Navdeep S, Janowitz, Tobias, Hicks, James B, Wigler, Michael, Pappin, Darryl J, Williams, Roger L, Cifani, Paolo, Tuveson, David A, Laporte, Jocelyn, Trotman, Lloyd C (October 2024) Dietary pro-oxidant therapy by a vitamin K precursor targets PI 3-kinase VPS34 function. Science, 386 (6720). eadk9167. ISSN 0036-8075

Barbi, Mali, Gowthaman, Divya, Katcher, Arielle, Gorman, Megan, Yueh, Brian, Nizam, Aaron, Chung, Charlie, Akyildiz, Erdogan Oguzhan, Frimer, Marina, Goldberg, Gary L, Beyaz, Semir (October 2024) Generation and Maintenance of Patient-Derived Endometrial Cancer Organoids. Bio-protocol, 14 (20). e5093. ISSN 2331-8325

Loh, Liyen, Carcy, Salomé, Krovi, Harsha S, Domenico, Joanne, Spengler, Andrea, Lin, Yong, Torres, Joshua, Prabakar, Rishvanth K, Palmer, William, Norman, Paul J, Stone, Matthew, Brunetti, Tonya, Meyer, Hannah V, Gapin, Laurent (September 2024) Unraveling the phenotypic states of human innate-like T cells: Comparative insights with conventional T cells and mouse models. Cell Reports, 43 (9). p. 114705. ISSN 2211-1247 (Public Dataset)

Yang, Xiaochun, Bhowmick, Krishanu, Rao, Shuyun, Xiang, Xiyan, Ohshiro, Kazufumi, Amdur, Richard L, Hassan, Md Imtaiyaz, Mohammad, Taj, Crandall, Keith, Cifani, Paolo, Shetty, Kirti, Lyons, Scott K, Merrill, Joseph R, Vegesna, Anil K, John, Sahara, Latham, Patricia S, Crawford, James M, Mishra, Bibhuti, Dasarathy, Srinivasan, Wang, Xin Wei, Yu, Herbert, Wang, Zhanwei, Huang, Hai, Krainer, Adrian R, Mishra, Lopa (August 2024) Aldehydes alter TGF-β signaling and induce obesity and cancer. Cell Reports, 43 (9). p. 114676. ISSN 2211-1247 (Public Dataset)

Klingbeil, Olaf, Skopelitis, Damianos, Tonelli, Claudia, Yoshimoto, Toyoki, Alpsoy, Aktan, Panepinto, Maria C, Minicozzi, Francesca, Merrill, Joseph R, Cafiero, Amanda M, Aggarwal, Disha, Russo, Suzanne, Ha, Taehoon, Demerdash, Osama E, Wee, Tse-Luen, Spector, David L, Lyons, Scott K, Tuveson, David A, Cifani, Paolo, Vakoc, Christopher R (July 2024) MARK2/MARK3 kinases are catalytic co-dependencies of YAP/TAZ in human cancer. Cancer Discovery. ISSN 2159-8274 (Public Dataset)

Vishwakarma, Dharmendra S, Moses, John E (July 2024) Benzene‐1,3‐disulfonyl fluoride and Benzene‐1,3,5‐trisulfonyl fluoride: Low‐Cost, Stable, and Selective Reagents for SuFEx‐Driven Deoxyazidation. Advanced Synthesis and Catalysis. ISSN 1615-4150

Bermejo-Rodriguez, Camino, Araos Henríquez, Joaquín, Caligiuri, Giuseppina, Pinto Teles, Sara, Park, Youngkyu, Evans, Anthony, Barrera, Lawrence N, Neesse, Albrecht, Grutzmann, Robert, Aust, Daniela, Rümmele, Petra, Knösel, Thomas, Narita, Masako, Narita, Masashi, Campbell, Fiona, Öhlund, Daniel, Pilarsky, Christian, Dow, Lukas E, Humbert, Patrick O, Biffi, Giulia, Tuveson, David A, Perez-Mancera, Pedro A (July 2024) Scribble Deficiency Promotes Pancreatic Ductal Adenocarcinoma Development and Metastasis. Cancer Research. ISSN 0008-5472 (Public Dataset)

Boire, Adrienne, Burke, Katy, Cox, Thomas R, Guise, Theresa, Jamal-Hanjani, Mariam, Janowitz, Tobias, Kaplan, Rosandra, Lee, Rebecca, Swanton, Charles, Vander Heiden, Matthew G, Sahai, Erik (June 2024) Why do patients with cancer die? Nature Reviews Cancer. ISSN 1474-175X

Maia-Silva, Diogo, Cunniff, Patrick J, Schier, Allison C, Skopelitis, Damianos, Trousdell, Marygrace C, Moresco, Philip, Gao, Yuan, Kechejian, Vahag, He, Xue-Yan, Sahin, Yunus, Wan, Ledong, Alpsoy, Aktan, Liverpool, Jynelle, Krainer, Adrian R, Egeblad, Mikala, Spector, David L, Fearon, Douglas T, Dos Santos, Camila O, Taatjes, Dylan J, Vakoc, Christopher R (June 2024) Interaction between MED12 and ΔNp63 activates basal identity in pancreatic ductal adenocarcinoma. Nature Genetics. ISSN 1061-4036

Henry, Samantha, Lewis, Steven Macauley, Cyrill, Samantha Leeanne, Callaway, Mackenzie Kate, Chatterjee, Deeptiman, Hanasoge Somasundara, Amritha Varshini, Jones, Gina, He, Xue-Yan, Caligiuri, Giuseppina, Ciccone, Michael Francis, Diaz, Isabella Andrea, Biswas, Amelia Aumalika, Hernandez, Evelyn, Ha, Taehoon, Wilkinson, John Erby, Egeblad, Mikala, Tuveson, David Arthur, Dos Santos, Camila Oresco (April 2024) Host response during unresolved urinary tract infection alters female mammary tissue homeostasis through collagen deposition and TIMP1. Nature Communications, 15 (1). p. 3282. ISSN 2041-1723 (Public Dataset)

Amit, Moran, Anastasaki, Corina, Dantzer, Robert, Demir, Ihsan Ekin, Deneen, Benjamin, Dixon, Karen O, Egeblad, Mikala, Gibson, Erin M, Hervey-Jumper, Shawn L, Hondermarck, Hubert, Magnon, Claire, Monje, Michelle, Na'ara, Shorook, Pan, Yuan, Repasky, Elizabeth A, Scheff, Nicole N, Sloan, Erica K, Talbot, Sebastien, Tracey, Kevin J, Trotman, Lloyd C, Valiente, Manuel, Van Aelst, Linda, Venkataramani, Varun, Venkatesh, Humsa S, Vermeer, Paola D, Winkler, Frank, Wong, Richard J, Gutmann, David H, Borniger, Jeremy C (April 2024) Next Directions in the Neuroscience of Cancers Arising outside the CNS. Cancer Discovery, 14 (4). pp. 669-673. ISSN 2159-8274

Homer, Joshua A, Koelln, Rebecca A, Barrow, Andrew S, Gialelis, Timothy L, Boiarska, Zlata, Steinohrt, Nikita S, Lee, Erinna F, Yang, Wen-Hsuan, Johnson, Robert M, Chung, Taemoon, Habowski, Amber N, Vishwakarma, Dharmendra S, Bhunia, Debmalya, Avanzi, Charlotte, Moorhouse, Adam D, Jackson, Mary, Tuveson, David A, Lyons, Scott K, Lukey, Michael J, Fairlie, W Douglas, Haider, Shozeb M, Steinmetz, Michel O, Prota, Andrea E, Moses, John E (March 2024) Modular synthesis of functional libraries by accelerated SuFEx click chemistry. Chemical Science, 15 (11). pp. 3879-3892. ISSN 2041-6520 (Public Dataset)

Ubhi, Tajinder, Zaslaver, Olga, Quaile, Andrew T, Plenker, Dennis, Cao, Pinjiang, Pham, Nhu-An, Békési, Angéla, Jang, Gun-Ho, O'Kane, Grainne M, Notta, Faiyaz, Moffat, Jason, Wilson, Julie M, Gallinger, Steven, Vértessy, Beáta G, Tuveson, David A, Röst, Hannes L, Brown, Grant W (March 2024) Cytidine deaminases APOBEC3C and APOBEC3D promote DNA replication stress resistance in pancreatic cancer cells. Nature Cancer. ISSN 2662-1347 (Public Dataset)

Ortiz, Jenelys Ruiz, Lewis, Steven M, Ciccone, Michael, Chatterjee, Deeptiman, Henry, Samantha, Siepel, Adam, Dos Santos, Camila O (January 2024) Single-Cell Transcription Mapping of Murine and Human Mammary Organoids Responses to Female Hormones. Journal of Mammary Gland Biology and Neoplasia, 29 (1). p. 3. ISSN 1083-3021 (Public Dataset)

Alpsoy, Aktan, Wu, Xiaoli S, Pal, Sujay, Klingbeil, Olaf, Kumar, Pramod, El Demerdash, Osama, Nalbant, Benan, Vakoc, Christopher R (January 2024) IκBζ is a dual-use coactivator of NF-κB and POU transcription factors. Molecular Cell. S1097-2765(24)00008. ISSN 1097-2765 (Public Dataset)

Amor, Corina, Fernández-Maestre, Inés, Chowdhury, Saria, Ho, Yu-Jui, Nadella, Sandeep, Graham, Courtenay, Carrasco, Sebastian E, Nnuji-John, Emmanuella, Feucht, Judith, Hinterleitner, Clemens, Barthet, Valentin JA, Boyer, Jacob A, Mezzadra, Riccardo, Wereski, Matthew G, Tuveson, David A, Levine, Ross L, Jones, Lee W, Sadelain, Michel, Lowe, Scott W (January 2024) Prophylactic and long-lasting efficacy of senolytic CAR T cells against age-related metabolic dysfunction. Nature Aging. ISSN 2662-8465 (Public Dataset)

Tonelli, Claudia, Yordanov, Georgi N, Hao, Yuan, Deschênes, Astrid, Hinds, Juliene, Belleau, Pascal, Klingbeil, Olaf, Brosnan, Erin, Doshi, Abhishek, Park, Youngkyu, Hruban, Ralph H, Vakoc, Christopher R, Dobin, Alexander, Preall, Jonathan, Tuveson, David A (January 2024) A mucus production programme promotes classical pancreatic ductal adenocarcinoma. Gut. ISSN 0017-5749

Homer, Joshua A, Sun, Shoujun, Koelln, Rebecca A, Moses, John E (January 2024) Protocol for producing phosphoramidate using phosphorus fluoride exchange click chemistry. STAR Protocols, 5 (1). p. 102824. ISSN 2666-1667

Xiang, Xiyan, Bhowmick, Krishanu, Shetty, Kirti, Ohshiro, Kazufumi, Yang, Xiaochun, Wong, Linda L, Yu, Herbert, Latham, Patricia S, Satapathy, Sanjaya K, Brennan, Christina, Dima, Richard J, Chambwe, Nyasha, Sharifova, Gulru, Cacaj, Fellanza, John, Sahara, Crawford, James M, Huang, Hai, Dasarathy, Srinivasan, Krainer, Adrian R, He, Aiwu R, Amdur, Richard L, Mishra, Lopa (2024) Mechanistically based blood proteomic markers in the TGF-β pathway stratify risk of hepatocellular cancer in patients with cirrhosis. Genes and Cancer, 15. pp. 1-14. ISSN 1947-6019

Lee, Hassal, Bates, Alexander, Marshall, Andrea, Callier, Shawneequa, Chambwe, Nyasha, Janowitz, Tobias (2023) Analysis and optimization of equitable US cancer clinical trial center access by travel time. Journal of Clinical Oncology, 41 (16). ISSN 0732-183X

Chen, W. C., Tareen, A., Kinney, J. B. (October 2018) Density Estimation on Small Data Sets. Physical Review Letters, 121 (16). p. 160605. ISSN 00319007 (ISSN)

Albrengues, J., Shields, M. A., Ng, D., Park, C. G., Ambrico, A., Poindexter, M. E., Upadhyay, P., Uyeminami, D. L., Pommier, A., Kuttner, V., Bruzas, E., Maiorino, L., Bautista, C., Carmona, E. M., Gimotty, P. A., Fearon, D. T., Chang, K., Lyons, S. K., Pinkerton, K. E., Trotman, L. C., Goldberg, M. S., Yeh, J. T., Egeblad, M. (September 2018) Neutrophil extracellular traps produced during inflammation awaken dormant cancer cells in mice. Science, 361 (6409). ISSN 0036-8075

Krishnan, N., Felice, C., Rivera, K., Pappin, D. J., Tonks, N. K. (July 2018) DPM-1001 decreased copper levels and ameliorated deficits in a mouse model of Wilson's disease. Genes Dev, 32 (13-14). pp. 944-952. ISSN 0890-9369

Tiriac, H., Belleau, P., Engle, D. D., Plenker, D., Deschenes, A., Somerville, T., Froeling, F. E. M., Burkhart, R. A., Denroche, R. E., Jang, G. H., Miyabayashi, K., Young, C. M., Patel, H., Ma, M., LaComb, J. F., Palmaira, R. L. D., Javed, A. A., Huynh, J. A., Johnson, M., Arora, K., Robine, N., Shah, M., Sanghvi, R., Goetz, A. B., Lowder, C. Y., Martello, L., Driehuis, E., Lecomte, N., Askan, G., Iacobuzio-Donahue, C. A., Clevers, H., Wood, L. D., Hruban, R. H., Thompson, E. D., Aguirre, A. J., Wolpin, B. M., Sasson, A., Kim, J., Wu, M., Bucobo, J. C., Allen, P. J., Sejpal, D. V., Nealon, W., Sullivan, J. D., Winter, J. M., Gimotty, P. A., Grem, J. L., DiMaio, D. J., Buscaglia, J. M., Grandgenett, P. M., Brody, J. R., Hollingsworth, M. A., O'Kane, G. M., Notta, F., Kim, E. J., Crawford, J. M., Devoe, C. E., Ocean, A., Wolfgang, C. L., Yu, K. H., Li, E., Vakoc, C. R., Hubert, B., Fischer, S. E., Wilson, J. M., Moffitt, R. A., Knox, J. J., Krasnitz, A., Gallinger, S., Tuveson, D. A. (May 2018) Organoid profiling identifies common responders to chemotherapy in pancreatic cancer. Cancer Discovery, 8 (9). pp. 1112-1129. ISSN 21598274 (Public Dataset)

Giuliano, C. J., Lin, A., Smith, J. C., Palladino, A. C., Sheltzer, J. M. (February 2018) MELK expression correlates with tumor mitotic activity but is not required for cancer growth. Elife, 7. ISSN 2050-084x

Krishnan, N., Konidaris, K. F., Gasser, G., Tonks, N. K. (February 2018) A potent, selective and orally bioavailable inhibitor of the protein tyrosine phosphatase PTP1B improves insulin and leptin signaling in animal models. J Biol Chem, 293 (5). pp. 1517-1525. ISSN 0021-9258

Lee, Je H. (July 2017) De Novo Gene Expression Reconstruction in Space. Trends in Molecular Medicine, 23 (7). pp. 583-593. ISSN 1471-4914

Lin, A., Giuliano, C. J., Sayles, N. M., Sheltzer, J. M. (March 2017) CRISPR/Cas9 mutagenesis invalidates a putative cancer dependency targeted in on-going clinical trials. Elife, 6. e24179. ISSN 2050-084x

Lee, J. H. (March 2017) Quantitative approaches for investigating the spatial context of gene expression. Wiley Interdiscip Rev Syst Biol Med, 9 (2). ISSN 1939-005X (Electronic)1939-005X (Linking)

Pal, D., Pertot, A., Shirole, N. H., Yao, Z., Anaparthy, N., Garvin, T., Cox, H., Chang, K., Rollins, F., Kendall, J., Edwards, L., Singh, V. A., Stone, G. C., Schatz, M. C., Hicks, J., Hannon, G., Sordella, R. (January 2017) TGF-beta reduces DNA ds-break repair mechanisms to heighten genetic diversity and adaptability of CD44+/CD24- cancer cells. Elife, 6. ISSN 2050-084X (Electronic)2050-084X (Linking)

This list was generated on Mon Nov 2 18:54:49 2026 EST.