Items where Subject is "microscopy"

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Albeanu, D. F., Soucy, E., Sato, T. F., Meister, M., Murthy, V. N. (2008) LED arrays as cost effective and efficient light sources for widefield microscopy. PLoS ONE, 3 (5). ISSN 19326203 (ISSN)

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Barykina, N. V., Subach, O. M., Doronin, D. A., Sotskov, V. P., Roshchina, M. A., Kunitsyna, T. A., Malyshev, A. Y., Smirnov, I. V., Azieva, A. M., Sokolov, I. S., Piatkevich, K. D., Burtsev, M. S., Varizhuk, A. M., Pozmogova, G. E., Anokhin, K. V., Subach, F. V., Enikolopov, G. N. (2016) A new design for a green calcium indicator with a smaller size and a reduced number of calcium-binding sites. Sci Rep, 6. p. 34447. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Broser, P. J., Erdogan, S., Grinevich, V., Osten, P., Sakmann, B., Wallace, D. J. (March 2008) Automated axon length quantification for populations of labelled neurons. Journal of Neuroscience Methods, 169 (1). pp. 43-54. ISSN 0165-0270

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Campbell, R. A., Eifert, R. W., Turner, G. C. (March 2014) Openstage: a low-cost motorized microscope stage with sub-micron positioning accuracy. PLoS One, 9 (2). e88977. ISSN 1932-6203

Campbell, R. A. A., Honegger, K. S., Gruntman, E., Turner, G. C. (2012) Two-Photon Imaging of Population Activity with Genetically Encoded Calcium Indicators in Living Flies. In: Genetically Encoded Functional Indicators. Neuromethods, 72 . Humana Press, pp. 113-124. ISBN 978-1-62703-013-7

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Denk, W., Svoboda, K. (March 1997) Photon upmanship: why multiphoton imaging is more than a gimmick. Neuron, 18 (3). pp. 351-7. ISSN 0896-6273

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Egeblad, M. (2012) c-fms+ myeloid cells respond to injection of E. coli in a mammary gland. [Video] (Unpublished)

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) CD11c+ dendritic-like cells migrate at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Carcinoma-associated fibroblasts in different tumor microenvironments. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Foxp3+ regulatory T cells migrate along blood vessels and at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Gr1+ myeloid cells are a patrolling subpopulation of the tumor-infiltrating myeloid cells. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Infiltration and migration of c-fms+ myeloid cells in the tumor microenvironment. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Migration of Foxp3+ regulatory T-lymphocytes is stopped in response to hypoxia. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy. Disease Models and Mechanisms, 1 (2-3). pp. 155-167. ISSN 17548403 (ISSN)

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) c-fms+ myeloid cells migrate in the normal mammary gland. [Video]

Egeblad, M., Nakasone, E. S., Werb, Z. (2010) Migration of CXCR6+ activated/memory T-cells in the tumor microenvironment. [Video]

Egeblad, M., Nakasone, E. S., Werb, Z. (2010) Migration of CXCR6+ activated/memory T-cells is stopped in response to hypoxia. [Video]

Ewald, A., Werb, Z., Egeblad, M. (2009) Dynamic, Long-Term, In Vivo Imaging of Tumor-Stroma Interactions in Mouse Models of Breast Cancer Using Spinning-Disk Confocal Microscopy. In: Live Cell Imaging: A Laboratory Manual, Second Edition. Cold Spring Harbor Laboratory Press, New York, pp. 419-439. ISBN 9780879698935

Ewald, A. J., Werb, Z., Egeblad, M. (2009) Myeloid cells extravasate and infiltrate late carcinoma lesions. [Video]

Ewald, A. J., Werb, Z., Egeblad, M. (2009) c-fms+ myeloid cells migrate in response to wounding on the surface of a normal mammary gland. [Video]

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Fu, Y.-Y., Lin, C.-W., Enikolopov, G. N., Sibley, E., Chiang, A.-S., Tang, S.-C. (August 2009) Microtome-Free 3-Dimensional Confocal Imaging Method for Visualization of Mouse Intestine With Subcellular-Level Resolution. Gastroenterology, 137 (2). pp. 453-465.

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Goldman, R. D., Swedlow, J. R., Spector, D. L. (2010) Live Cell Imaging: A Laboratory Manual. Cold Spring Harbor Laboratory Press. ISBN 9780879698935

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Harder, N., Bodnar, M., Eils, R., Spector, D. L., Rohr, K. (2011) 3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. pp. 216-219.

Harvey, C. D., Ehrhardt, A. G., Cellurale, C., Zhong, H., Yasuda, R., Davis, R. J., Svoboda, K. (December 2008) A genetically encoded fluorescent sensor of ERK activity. Proc Natl Acad Sci U S A, 105 (49). pp. 19264-9.

Helfman, D. M., Levy, E. T., Berthier, C., Shtutman, M., Riveline, D., Grosheva, I., Lachish-Zalait, A., Elbaum, M., Bershadsky, A. D. (October 1999) Caldesmon inhibits nonmuscle cell contractility and interferes with the formation of focal adhesions. Molecular Biology of the Cell , 10 (10). pp. 3097-112. ISSN 1059-1524 (Print)

Huang, Z. J., Taniguchi, H., He, M., Kuhlman, S. (February 2014) Cre-dependent adeno-associated virus preparation and delivery for labeling neurons in the mouse brain. Cold Spring Harb Protoc, 2014 (2). pp. 190-4. ISSN 1559-6095 (Electronic)1559-6095 (Linking)

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Kim, Y., Pradhan, K., Fitzgerald, G., Umadevi Venkataraju, K, Osten, P. (November 2013) Serial two-photon tomography-based whole-brain activity mapping in cntnap2 ko mouse model of autism. In: Neuroscience 2013, Nov 9th-13th 2013, San Diego, CA.

Kim, Il-Han, Chen, Yi-Chun M., Spector, David L., Eils, Roland, Rohr, Karl (2011) Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion. IEEE Trans Image Process., 20 (4). pp. 1011-1022. ISSN 1941-0042

Kleinfeld, D., Mitra, P. P., Helmchen, F., Denk, W. (1998) Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. Proceedings of the National Academy of Sciences of the United States of America, 95 (26). pp. 15741-15746. ISSN 00278424 (ISSN)

Koh, S. B., Mascalchi, P., Rodriguez, E., Lin, Y., Jodrell, D. I., Richards, F. M., Lyons, S. K. (January 2017) A quantitative FastFUCCI assay defines cell cycle dynamics at a single-cell level. J Cell Sci, 130 (2). pp. 512-520. ISSN 0021-9533

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Li, Siran, Stone, Howard A, Murphy, Coleen T (January 2015) A microfluidic device and automatic counting system for the study of C. elegans reproductive aging. Lab on a Chip: miniaturisation for chemistry, physics, biology, materials science and bioengineering, 15 (2). pp. 524-531. ISSN 1473-0197

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Mainen, Z. F., Malinow, R., Svoboda, K. (May 1999) Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated. Nature, 399 (6732). pp. 151-5. ISSN 0028-0836 (Print)

Maletic-Savatic, M., Malinow, R., Svoboda, K. (March 1999) Rapid dendritic morphogenesis in CA1 hippocampal dendrites induced by synaptic activity. Science, 283 (5409). pp. 1923-7. ISSN 0036-8075 (Print)

Malinow, R., Hayashi, Y., Maletic-Savatic, M., Zaman, S. H., Poncer, J-C, Shi, S. H., Esteban, J. A. (1999) Introduction of green fluorescent protein into hippocampal neurons through viral infection. In: Imaging neurons : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0879695420

Misteli, T. (1996) The mammalian Golgi apparatus during M-phase. Progress in cell cycle research, 2. pp. 267-77. ISSN 1087-2957 (Print)

Mitra, P. P., Rosa, M. G., Karten, H. J. (June 2013) Panoptic Neuroanatomy: Digital Microscopy of Whole Brains and Brain-Wide Circuit Mapping. Brain, Behavior and Evolution, 81 (4). pp. 203-205. ISSN 00068977 (ISSN)

Mizukami, Y., Ma, H. (March 1997) Determination of Arabidopsis floral meristem identity by AGAMOUS. Plant Cell, 9 (3). pp. 393-408. ISSN 1040-4651 (Print)

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Nemec, P., Osten, P. (January 2020) The evolution of brain structure captured in stereotyped cell count and cell type distributions. Curr Opin Neurobiol, 60. pp. 176-183. ISSN 0959-4388

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Petralia, R. S., Esteban, J. A., Wang, Y. X., Partridge, J. G., Zhao, H. M., Wenthold, R. J., Malinow, R. (January 1999) Selective acquisition of AMPA receptors over postnatal development suggests a molecular basis for silent synapses. Nature Neuroscience, 2 (1). pp. 31-6.

Petzold, G. C., Albeanu, D. F., Sato, T. F., Murthy, V. N. (2008) Coupling of Neural Activity to Blood Flow in Olfactory Glomeruli Is Mediated by Astrocytic Pathways. Neuron, 58 (6). pp. 897-910. ISSN 08966273 (ISSN)

Poremba, C., Scheel, C., Hero, B., Christiansen, H., Schaefer, K. L., Nakayama, J., Berthold, F., Juergens, H., Boecker, W., Dockhorn-Dworniczak, B. (July 2000) Telomerase activity and telomerase subunits gene expression patterns in neuroblastoma: A molecular and immunohistochemical study establishing prognostic tools for fresh-frozen and paraffin-embedded tissues. Journal of Clinical Oncology, 18 (13). pp. 2582-2592. ISSN 0732-183X

Powell, R. D., Halsey, C. M., Spector, D. L., Kaurin, S. L., McCann, J., Hainfeld, J. F. (1997) A covalent fluorescent-gold immunoprobe: simultaneous detection of a pre-mRNA splicing factor by light and electron microscopy. Journal of Histochemistry and Cytochemistry, 45 (7). pp. 947-956. ISSN 0022-1554

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Ragan, T., Kadiri, L. R., Venkataraju, K. U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H. S., Osten, P. (March 2012) Serial two-photon tomography for automated ex vivo mouse brain imaging. Nature Methods, 9 (3). pp. 255-258. ISSN 15487091 (ISSN)

Rajan, I., Witte, S., Cline, H. T. (February 1999) NMDA receptor activity stabilizes presynaptic retinotectal axons and postsynaptic optic tectal cell dendrites in vivo. Journal of neurobiology, 38 (3). pp. 357-68. ISSN 0022-3034 (Print)

Ropelewski, Alexander J, Rizzo, Megan A, Swedlow, Jason R, Huisken, Jan, Osten, Pavel, Khanjani, Neda, Weiss, Kurt, Bakalov, Vesselina, Engle, Michelle, Gridley, Lauren, Krzyzanowski, Michelle, Madden, Tom, Maiese, Deborah, Mandal, Meisha, Waterfield, Justin, Williams, David, Hamilton, Carol M, Huggins, Wayne (July 2022) Standard metadata for 3D microscopy. Scientific Data, 9 (1). p. 449. ISSN 2052-4463

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Sato, T. R., Gray, N. W., Mainen, Z. F., Svoboda, K. (July 2007) The Functional Microarchitecture of the Mouse Barrel Cortex. PLoS Biology, 5 (7). e189.

Sounni, N. E., Dehne, K., Van Kempen, L., Egeblad, M., Affara, N. I., Cuevas, I., Wiesen, J., Junankar, S., Korets, L., Lee, J., Shen, J., Morrison, C. J., Overall, C. M., Krane, S. M., Werb, Z., Boudreau, N., Coussens, L. M. (2010) Extravasation and stromal cell uptake of fluorescent dextran in tumors. [Video]

Spector, D. L., Godlman, R. D. (2006) Basic methods in microscopy : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.. ISBN 0879697474

Spector, David L. (2011) Immunofluorescence localization of nuclear proteins. Cold Spring Harbor Protocols, 2011 (10). pp. 1276-1280. ISSN 1559-6095

Svoboda, K. (June 1998) Shining light on spiny matters. Nature Neuroscience, 1 (2). pp. 93-4. ISSN 1097-6256

Svoboda, K., Block, S. M. (1994) Biological applications of optical forces. Annu Rev Biophys Biomol Struct, 23. pp. 247-85. ISSN 1056-8700

Svoboda, K., Denk, W., Kleinfeld, D., Tank, D. W. (January 1997) In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature, 385 (6612). pp. 161-5. ISSN 0028-0836

Svoboda, K., Tank, D. W., Denk, W. (May 1996) Direct measurement of coupling between dendritic spines and shafts. Science, 272 (5262). pp. 716-9. ISSN 0036-8075

Svoboda, K., Yasuda, R. (June 2006) Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron, 50 (6). pp. 823-39. ISSN 0896-6273 (Print)

Svoboda, Karel, Schmidt, Christoph F., Schnapp, Bruce J., Block, Steven M. (October 1993) Direct observation of kinesin stepping by optical trapping interferometry. Nature, 365 (6448). pp. 721-7. ISSN 0028-0836

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Teijeira, A., Etxeberria, I., Ponz-Sarvise, M., Melero, I. (June 2016) Immunotherapy of Cancer Visualized by Live Microscopy: Seeing Is Believing. Clin Cancer Res. ISSN 1078-0432 (Electronic)1078-0432 (Linking)

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Weimer, R. M. (2006) Preservation of C. elegans tissue via high-pressure freezing and freeze-substitution for ultrastructural analysis and immunocytochemistry. Methods Mol Biol, 351. pp. 203-21. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Wu, G. Y., Cline, H. T. (January 1998) Stabilization of dendritic arbor structure in vivo by CaMKII. Science, 279 (5348). pp. 222-6. ISSN 0036-8075 (Print)

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Yu, I. J., Spector, D. L., Bae, Y.-S., Marshak, D. R. (September 1991) Immunocytochemical localization of casein kinase II during interphase and mitosis. J Cell Biol, 114 (6). pp. 1217-32. ISSN 0021-9525