Items where Subject is "flourescence microscopy"

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Number of items at this level: 46.

A

Abdeladim, L., Matho, K. S., Clavreul, S., Mahou, P., Sintes, J. M., Solinas, X., Arganda-Carreras, I., Turney, S. G., Lichtman, J. W., Chessel, A., Bemelmans, A. P., Loulier, K., Supatto, W., Livet, J., Beaurepaire, E. (April 2019) Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy. Nat Commun, 10 (1). p. 1662. ISSN 2041-1723

Abrams, Benjamin, Pengo, Thomas, Wee, Tse-Luen, Deagle, Rebecca C, Vuillemin, Nelly, Callahan, Linda M, Smith, Megan A, Kubow, Kristopher E, Girard, Anne-Marie, Rappoport, Joshua Z, Bayles, Carol J, Cameron, Lisa A, Cole, Richard, Brown, Claire M (April 2023) Tissue-Like 3D Standard and Protocols for Microscope Quality Management. Microscopy and Microanalysis, 29 (2). pp. 616-634. ISSN 1431-9276

C

Campbell, R. A. A., Honegger, K. S., Gruntman, E., Turner, G. C. (2012) Two-Photon Imaging of Population Activity with Genetically Encoded Calcium Indicators in Living Flies. In: Genetically Encoded Functional Indicators. Neuromethods, 72 . Humana Press, pp. 113-124. ISBN 978-1-62703-013-7

E

Egeblad, M. (2012) c-fms+ myeloid cells respond to injection of E. coli in a mammary gland. [Video] (Unpublished)

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) CD11c+ dendritic-like cells migrate at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Carcinoma-associated fibroblasts in different tumor microenvironments. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Foxp3+ regulatory T cells migrate along blood vessels and at the tumor-stroma border. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Gr1+ myeloid cells are a patrolling subpopulation of the tumor-infiltrating myeloid cells. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Infiltration and migration of c-fms+ myeloid cells in the tumor microenvironment. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Migration of Foxp3+ regulatory T-lymphocytes is stopped in response to hypoxia. [Video]

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy. Disease Models and Mechanisms, 1 (2-3). pp. 155-167. ISSN 17548403 (ISSN)

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) c-fms+ myeloid cells migrate in the normal mammary gland. [Video]

Egeblad, M., Nakasone, E. S., Werb, Z. (2010) Migration of CXCR6+ activated/memory T-cells in the tumor microenvironment. [Video]

Egeblad, M., Nakasone, E. S., Werb, Z. (2010) Migration of CXCR6+ activated/memory T-cells is stopped in response to hypoxia. [Video]

Ewald, A., Werb, Z., Egeblad, M. (2009) Dynamic, Long-Term, In Vivo Imaging of Tumor-Stroma Interactions in Mouse Models of Breast Cancer Using Spinning-Disk Confocal Microscopy. In: Live Cell Imaging: A Laboratory Manual, Second Edition. Cold Spring Harbor Laboratory Press, New York, pp. 419-439. ISBN 9780879698935

Ewald, A. J., Werb, Z., Egeblad, M. (2009) Myeloid cells extravasate and infiltrate late carcinoma lesions. [Video]

Ewald, A. J., Werb, Z., Egeblad, M. (2009) c-fms+ myeloid cells migrate in response to wounding on the surface of a normal mammary gland. [Video]

G

Giovannucci, A., Friedrich, J., Gunn, P., Kalfon, J., Brown, B. L., Koay, S. A., Taxidis, J., Najafi, F., Gauthier, J. L., Zhou, P., Khakh, B. S., Tank, D. W., Chklovskii, D. B., Pnevmatikakis, E. A. (January 2019) CaImAn an open source tool for scalable calcium imaging data analysis. Elife, 8. ISSN 2050-084x

Gornet, J., Venkataraju, K. U., Narasimhan, A., Turner, N., Lee, K., Seung, H. S., Osten, P., Sumbul, U. (April 2019) Reconstructing neuronal anatomy from whole-brain images. Proceedings - International Symposium on Biomedical Imaging, 218-222 art no 8759197. ISBN 19457928 (ISSN); 9781538636411 (ISBN)

H

Harder, N., Bodnar, M., Eils, R., Spector, D. L., Rohr, K. (2011) 3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images. 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. pp. 216-219.

Harvey, C. D., Ehrhardt, A. G., Cellurale, C., Zhong, H., Yasuda, R., Davis, R. J., Svoboda, K. (December 2008) A genetically encoded fluorescent sensor of ERK activity. Proc Natl Acad Sci U S A, 105 (49). pp. 19264-9.

J

Janicki, S. M., Spector, D. L. (2003) Nuclear choreography: interpretations from living cells. Current Opinion in Cell Biology, 15 (2). pp. 149-157. ISSN 0955-0674

K

Kim, Il-Han, Chen, Yi-Chun M., Spector, David L., Eils, Roland, Rohr, Karl (2011) Nonrigid registration of 2-D and 3-D dynamic cell nuclei images for improved classification of subcellular particle motion. IEEE Trans Image Process., 20 (4). pp. 1011-1022. ISSN 1941-0042

Komai, S., Denk, W., Osten, P., Brecht, M., Margrie, T. W. (2006) Two-photon targeted patching (TPTP) in vivo. Nature Protocols, 1 (2). pp. 647-52. ISSN 1745-2473

L

Lazarides, E. (1975) Tropomyosin Antibody - Specific Localization of Tropomyosin in Nonmuscle Cells. Journal of Cell Biology, 65 (3). pp. 549-561.

Lee, Ji-Sook, Wee, Tse-Luen Erika, Brown, Claire M (April 2014) Calibration of wide-field deconvolution microscopy for quantitative fluorescence imaging. Journal of Biomolecular Techniques, 25 (1). pp. 31-40. ISSN 1524-0215

M

Mubaid, Firas, Kaufman, Daniel, Wee, Tse-Luen, Nguyen-Huu, Dong-Son, Young, David, Anghelopoulou, Maria, Brown, Claire M (April 2019) Fluorescence microscope light source stability. Histochemistry and Cell Biology, 151 (4). pp. 357-366. ISSN 0948-6143

N

Nath, A., Trexler, A. J., Koo, P., Miranker, A. D., Atkins, W. M., Rhoades, E. (2010) Single-molecule fluorescence spectroscopy using phospholipid bilayer nanodiscs. Methods Enzymol, 472. pp. 89-117. ISSN 0076-6879

Niedworok, C. J., Brown, A. P., Jorge Cardoso, M., Osten, P., Ourselin, S., Modat, M., Margrie, T. W. (July 2016) aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data. Nat Commun, 7. p. 11879. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

O

Osten, P., Margrie, T. W. (June 2013) Mapping brain circuitry with a light microscope. Nat Methods, 10 (6). pp. 515-23. ISSN 1548-7105 (Electronic)1548-7091 (Linking)

R

Ragan, T., Kadiri, L. R., Venkataraju, K. U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H. S., Osten, P. (March 2012) Serial two-photon tomography for automated ex vivo mouse brain imaging. Nature Methods, 9 (3). pp. 255-258. ISSN 15487091 (ISSN)

Rajah, Abira, Boudreau, Colton G, Ilie, Alina, Wee, Tse-Luen, Tang, Kaixi, Borisov, Aleksandar Z, Orlowski, John, Brown, Claire M (August 2019) Paxillin S273 Phosphorylation Regulates Adhesion Dynamics and Cell Migration through a Common Protein Complex with PAK1 and βPIX. Scientific Reports, 9 (1). p. 11430. ISSN 2045-2322

S

Shuvaev, S. A., Lazutkin, A. A., Kedrov, A. V., Anokhin, K. V., Enikolopov, G. N., Koulakov, A. A. (2017) DALMATIAN: An Algorithm for Automatic Cell Detection and Counting in 3D. Front Neuroanat, 11. p. 117. ISSN 1662-5129 (Print)1662-5129

Sounni, N. E., Dehne, K., Van Kempen, L., Egeblad, M., Affara, N. I., Cuevas, I., Wiesen, J., Junankar, S., Korets, L., Lee, J., Shen, J., Morrison, C. J., Overall, C. M., Krane, S. M., Werb, Z., Boudreau, N., Coussens, L. M. (2010) Extravasation and stromal cell uptake of fluorescent dextran in tumors. [Video]

Spector, David L. (2011) Immunofluorescence localization of nuclear proteins. Cold Spring Harbor Protocols, 2011 (10). pp. 1276-1280. ISSN 1559-6095

Svoboda, K., Yasuda, R. (June 2006) Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron, 50 (6). pp. 823-39. ISSN 0896-6273 (Print)

Szadai, Zoltán, Pi, Hyun-Jae, Chevy, Quentin, Ócsai, Katalin, Albeanu, Dinu F, Chiovini, Balázs, Szalay, Gergely, Katona, Gergely, Kepecs, Adam, Rózsa, Balázs (November 2022) Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment. eLife, 11. e78815. ISSN 2050-084X

T

Tektonidis, Marco, Kim, Il-Han, Chen, Yi-Chun M., Eils, Roland, Spector, David L., Rohr, Karl (January 2015) Non-Rigid Multi-Frame registration of cell nuclei in live cell fluorescence microscopy image data. Medical Image Analysis, 19 (1). pp. 1-14. ISSN 1361-8415

Tran, Thu M, Demesa-Arevalo, Edgar, Kitagawa, Munenori, Garcia-Aguilar, Marcelina, Grimanelli, Daniel, Jackson, David (April 2021) An Optimized Whole-Mount Immunofluorescence Method for Shoot Apices. Curr Protoc, 1 (4). e101. ISSN 2691-1299

W

Wang, X., Tucciarone, J., Jiang, S., Yin, F., Wang, B. S., Wang, D., Jia, Y., Jia, X., Li, Y., Yang, T., Xu, Z., Akram, M. A., Wang, Y., Zeng, S., Ascoli, G. A., Mitra, P., Gong, H., Luo, Q., Huang, Z. J. (March 2019) Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Rep, 26 (11). 3145-3159.e5.

Wang, K., Feramisco, J. R., Ash, J. F. (1982) Fluorescent Localization of Contractile-Proteins in Tissue-Culture Cells. Methods in Enzymology, 85. pp. 514-562.

Wee, Tse-Luen, Mau, Yi-Wen, Fang, Chia-Yi, Hsu, Hsiang-Ling, Han, Chau-Chung, Chang, Huan-Cheng (2009) Preparation and characterization of green fluorescent nanodiamonds for biological applications. Diamond and Related Materials, 18 (2-3). pp. 567-573. ISSN 0925-9635

Wee, Tse-Luen, Tzeng, Yan-Kai, Han, Chau-Chung, Chang, Huan-Cheng, Fann, Wunshain, Hsu, Jui-Hung, Chen, Kuan-Ming, Yu, Yueh-Chung (September 2007) Two-photon excited fluorescence of nitrogen-vacancy centers in proton-irradiated type Ib diamond. Journal of Physical Chemistry A, 111 (38). pp. 9379-9386. ISSN 1089-5639

Wee, Tse-Luen Erika, Schmidt, Luciana C, Scaiano, Juan C (2012) Photooxidation of 9-Anthraldehyde Catalyzed by Gold Nanoparticles: Solution and Single Nanoparticle Studies Using Fluorescence Lifetime Imaging. Journal of Physical Chemistry C, 116 (45). pp. 24373-24379. ISSN 1932-7447

Y

Yasuda, Ryohei, Harvey, Christopher D., Zhong, Haining, Sobczyk, Aleksander, Van Aelst, Linda, Svoboda, Karel (2006) Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature Neuroscience, 9 (2). pp. 283-291. ISSN 10976256

Yu, I. J., Spector, D. L., Bae, Y.-S., Marshak, D. R. (September 1991) Immunocytochemical localization of casein kinase II during interphase and mitosis. J Cell Biol, 114 (6). pp. 1217-32. ISSN 0021-9525

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