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Mangone, M., Myers, M. P., Herr, W. (February 2010) Role of the HCF-1 Basic Region in Sustaining Cell Proliferation. PLoS ONE, 5 (2). e9020. ISSN 1932-6203 (Electronic) 1932-6203 (Linking)

Lee, S., Horn, V., Julien, E., Liu, Y., Wysocka, J., Bowerman, B., Hengartner, M. O., Herr, W. (November 2007) Epigenetic Regulation of Histone H3 Serine 10 Phosphorylation Status by HCF-1 Proteins in C. elegans and Mammalian Cells. PLoS ONE, 2 (11). e1213. ISSN 1932-6203 (Electronic)

Tyagi, S., Chabes, A. L., Wysocka, J., Herr, W. (July 2007) E2F Activation of S Phase Promoters via Association with HCF-1 and the MLL Family of Histone H3K4 Methyltransferases. Molecular Cell, 27 (1). pp. 107-119. ISSN 1097-2765

Klejman, M. P., Zhao, X. M., van Schaik, F. M. A., Herr, W., Timmers, H. T. M. (2005) Mutational analysis of BTAF1-TBP interaction: BTAF1 can rescue DNA-binding defective TBP mutants. Nucleic Acids Research, 33 (17). pp. 5426-5436. ISSN 0305-1048

Zhao, X., Herr, W. (November 2003) Role of the inhibitory DNA-binding surface of human TATA-binding protein in recruitment of human TFIIB family members. Molecular and Cellular Biology, 23 (22). pp. 8152-60. ISSN 0270-7306 (Print)

Wysocka, J., Herr, W. (June 2003) The herpes simplex virus VP16-induced complex: the makings of a regulatory switch. Trends in Biochemical Sciences, 28 (6). pp. 294-304. ISSN 09680004 (ISSN)

Chabes, A., Thelander, L. (May 2003) DNA building blocks at the foundation of better survival. Cell Cycle, 2 (3). pp. 171-3. ISSN 1551-4005

Julien, E., Herr, W. (May 2003) Proteolytic processing is necessary to separate and ensure proper cell growth and cytokinesis functions of HCF-1. Embo Journal, 22 (10). pp. 2360-2369. ISSN 0261-4189

Wysocka, J., Myers, M. P., Laherty, C. D., Eisenman, R. N., Herr, W. (April 2003) Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes and Development, 17 (7). pp. 896-911. ISSN 08909369 (ISSN)

Zhao, X. M., Schramm, L., Hernandez, N., Herr, W. (January 2003) A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members. Molecular Cell, 11 (1). pp. 151-161. ISSN 1097-2765

Julien, E., Tseng, B., Lee, S., Herr, W. (November 2002) Cell-cycle functions of the herpes simplex virus host cell factor HCF-1. Molecular Biology of the Cell, 13. 437A-437A. ISSN 1059-1524

Reilly, P. T., Wysocka, J., Herr, W. (October 2002) Inactivation of the retinoblastoma protein family can bypass the HCF-1 defect in tsBN67 cell proliferation and cytokinesis. Molecular and Cellular Biology, 22 (19). pp. 6767-6778. ISSN 0270-7306

Reilly, P. T., Herr, W. (July 2002) Spontaneous reversion of tsBN67 cell proliferation and cytokinesis defects in the absence of HCF-1 function. Experimental Cell Research, 277 (1). pp. 119-130. ISSN 0014-4827

Domkin, V., Thelander, L., Chabes, A. (May 2002) Yeast DNA damage-inducible Rnr3 has a very low catalytic activity strongly stimulated after the formation of a cross-talking Rnr1/Rnr3 complex. Journal of Biological Chemistry, 277 (21). pp. 18574-18578. ISSN 0021-9258

Zhao, X. M., Herr, W. (March 2002) A regulated two-step mechanism of TBP binding to DNA: A solvent-exposed surface of TBP inhibits TATA box recognition. Cell, 108 (5). pp. 615-627. ISSN 0092-8674

Lee, S., Herr, W. (December 2001) Stabilization but not the transcriptional activity of herpes simplex virus VP16-induced complexes is evolutionarily conserved among HCF family members. Journal of Virology, 75 (24). pp. 12402-12411. ISSN 0022-538X

Babb, R., Huang, C. C., Aufiero, D. J., Herr, W. (July 2001) DNA recognition by the herpes simplex virus transactivator VP16: a novel DNA-Binding structure. Molecular and Cellular Biology, 21 (14). pp. 4700-4712. ISSN 0270-7306

Wysocka, J., Reilly, P. T., Herr, W. (June 2001) Loss of HCF-1-chromatin association precedes temperature-induced growth arrest of tsBN67 cells. Molecular and Cellular Biology, 21 (11). pp. 3820-3829. ISSN 0270-7306

Wysocka, J., Liu, Y., Kobayashi, R., Herr, W. (May 2001) Developmental and cell-cycle regulation of Caenorhabditis elegans HCF phosphorylation. Biochemistry, 40 (19). pp. 5786-5794. ISSN 0006-2960

Herr, W. (March 2001) A four-year Ph.D. degree in the biological sciences. Faseb Journal, 15 (5). A865-A865. ISSN 0892-6638

Wilson, A. C., Boutros, M., Johnson, K. M., Herr, W. (September 2000) HCF-1 amino- and carboxy-terminal subunit association through two separate sets of interaction modules: Involvement of fibronectin type 3 repeats. Molecular and Cellular Biology, 20 (18). pp. 6721-6730. ISSN 0270-7306

DeZazzo, J., Xia, S., Christensen, J., Velinzon, K., Tully, T. (October 1999) Developmental expression of an amn(+) transgene rescues the mutant memory defect of amnesiac adults. Journal of Neuroscience, 19 (20). pp. 8740-6. ISSN 1529-2401 (Electronic)

Liu, Y., Gong, W., Huang, C. C., Herr, W., Cheng, X. (July 1999) Crystal structure of the conserved core of the herpes simplex virus transcriptional regulatory protein VP16. Genes and Development, 13 (13). pp. 1692-703. ISSN 0890-9369 (Print)

Liu, M., Lee, B. H., Mathews, M. B. (May 1999) Involvement of RFX1 protein in the regulation of the human proliferating cell nuclear antigen promoter. Journal of Biological Chemistry, 274 (22). pp. 15433-9. ISSN 0021-9258 (Print)

Pinto, S., Quintana, D. G., Smith, P., Mihalek, R. M., Hou, Z. H., Boynton, S., Jones, C. J., Hendricks, M., Velinzon, K., Wohlschlegel, J. A., Austin, R. J., Lane, W. S., Tully, T., Dutta, A. (May 1999) latheo encodes a subunit of the origin recognition complex and disrupts neuronal proliferation and adult olfactory memory when mutant. Neuron, 23 (1). pp. 45-54. ISSN 0896-6273 (Print)

Liu, Y., Hengartner, M. O., Herr, W. (January 1999) Selected elements of herpes simplex virus accessory factor HCF are highly conserved in Caenorhabditis elegans. Molecular and Cellular Biology, 19 (1). pp. 909-15. ISSN 0270-7306 (Print)

Lee, B. H., Liu, M., Mathews, M. B. (February 1998) Regulation of the human proliferating cell nuclear antigen promoter by the adenovirus E1A-associated protein p107. Journal of Virology, 72 (2). pp. 1138-45. ISSN 0022-538X

Hinkley, C. S., Blasco, M. A., Funk, W. D., Feng, J., Villeponteau, B., Greider, C. W., Herr, W. (January 1998) The mouse telomerase RNA 5"-end lies just upstream of the telomerase template sequence. Nucleic Acids Research, 26 (2). pp. 532-6. ISSN 0305-1048

Herr, W. (1998) The herpes simplex virus VP16-induced complex: mechanisms of combinatorial transcriptional regulation. Cold Spring Harbor Symposia on Quantitative Biology, 63. pp. 599-607. ISSN 00917451 (ISSN)

Freiman, R. N., Herr, W. (December 1997) Viral mimicry: common mode of association with HCF by VP16 and the cellular protein LZIP. Genes and Development, 11 (23). pp. 3122-7. ISSN 08909369 (ISSN)

Babb, R., Cleary, M. A., Herr, W. (December 1997) OCA-B is a functional analog of VP16 but targets a separate surface of the Oct-1 POU domain. Molecular and Cellular Biology, 17 (12). pp. 7295-305. ISSN 0270-7306 (Print)

Wilson, A. C., Freiman, R. N., Goto, H., Nishimoto, T., Herr, W. (October 1997) VP16 targets an amino-terminal domain of HCF involved in cell cycle progression. Molecular and Cellular Biology, 17 (10). pp. 6139-46. ISSN 0270-7306

Cleary, M. A., Pendergrast, P. S., Herr, W. (August 1997) Structural flexibility in transcription complex formation revealed by protein-DNA photocrosslinking. Proceedings of the National Academy of Sciences, 94 (16). pp. 8450-5. ISSN 0027-8424 (Print)

Lai, J. S., Herr, W. (July 1997) Interdigitated residues within a small region of VP16 interact with Oct-1, HCF, and DNA. Molecular and Cellular Biology, 17 (7). pp. 3937-46. ISSN 0270-7306 (Print)

Tansey, W. P., Herr, W. (March 1997) TAFs: guilt by association? Cell, 88 (6). pp. 729-32. ISSN 0092-8674

Atanasoski, S., Schreiber, E., Fontana, A., Herr, W. (March 1997) N-Oct 5 is generated by in vitro proteolysis of the neural POU-domain protein N-Oct 3. Oncogene, 14 (11). pp. 1287-94. ISSN 0950-9232 (Print)

Tansey, William P., Herr, Winship (February 1997) Selective use of TBP and TFIIB revealed by a TATA-TBP-TFIIB array with altered specificity. Science, 275 (5301). pp. 829-31. ISSN 0036-8075 (Print)

Huang, C. C., Herr, W. (June 1996) Differential control of transcription by homologous homeodomain coregulators. Mol Cell Biol, 16 (6). pp. 2967-76. ISSN 0270-7306 (Print)

Tansey, W. P., Herr, W. (November 1995) The ability to associate with activation domains in vitro is not required for the TATA box-binding protein to support activated transcription in vivo. Proc Natl Acad Sci U S A, 92 (23). pp. 10550-4. ISSN 0027-8424 (Print)

Wilson, A. C., Peterson, M. G., Herr, W. (October 1995) The HCF repeat is an unusual proteolytic cleavage signal. Genes Dev, 9 (20). pp. 2445-58. ISSN 0890-9369 (Print)

Herr, W., Cleary, M. A. (July 1995) The POU domain: versatility in transcriptional regulation by a flexible two-in-one DNA-binding domain. Genes Dev, 9 (14). pp. 1679-93. ISSN 0890-9369 (Print)

Das, G., Hinkley, C. S., Herr, W. (April 1995) Basal promoter elements as a selective determinant of transcriptional activator function. Nature, 374 (6523). pp. 657-60. ISSN 0028-0836 (Print)

Herr, Winship, Kingston, Robert (April 1995) Chromosomes and expression mechanisms. Current Opinion in Genetics & Development, 5 (2). pp. 151-152.

Cleary, M. A., Herr, W. (April 1995) Mechanisms for flexibility in DNA sequence recognition and VP16-induced complex formation by the Oct-1 POU domain. Mol Cell Biol, 15 (4). pp. 2090-100. ISSN 0270-7306 (Print)

Wilson, A. C., Parrish, J. E., Massa, H. F., Nelson, D. L., Trask, B. J., Herr, W. (January 1995) The gene encoding the VP16-accessory protein HCF (HCFC1) resides in human Xq28 and is highly expressed in fetal tissues and the adult kidney. Genomics, 25 (2). pp. 462-8. ISSN 0888-7543 (Print)

Tansey, William P., Ruppert, Siegfried, Tjian, Robert, Herr, Winship (November 1994) Multiple regions of TBP participate in the response to transcriptional activators in vivo. Genes Dev, 8 (22). pp. 2756-69. ISSN 0890-9369 (Print)

Tanaka, M., Clouston, W. M., Herr, W. (September 1994) The Oct-2 glutamine-rich and proline-rich activation domains can synergize with each other or duplicates of themselves to activate transcription. Mol Cell Biol, 14 (9). pp. 6046-55. ISSN 0270-7306 (Print)

Tanaka, M., Herr, W. (September 1994) Reconstitution of transcriptional activation domains by reiteration of short peptide segments reveals the modular organization of a glutamine-rich activation domain. Mol Cell Biol, 14 (9). pp. 6056-67. ISSN 0270-7306 (Print)

Klemm, J. D., Rould, M. A., Aurora, R., Herr, W., Pabo, C. O. (April 1994) Crystal-Structure of the Oct-1 Pou Domain Bound to an Octamer Site - DNA Recognition with Tethered DNA-Binding Modules. Cell, 77 (1). pp. 21-32. ISSN 0092-8674

Hinkley, C. S., Tanaka, M., Herr, W. (February 1994) Detailed Mutagenesis of a Reiterated 18-Amino-Acid Glutamine-Rich Activation Domain. Journal of Cellular Biochemistry. p. 31. ISSN 0730-2312

Das, G., Hinkley, C., Tanaka, M., Herr, W. (February 1994) Functional Specificity of Promoter Selective Activation Domains. Journal of Cellular Biochemistry. p. 29. ISSN 0730-2312

Tansey, W. P., Herr, W. (February 1994) In-Vivo Analysis of the Human Tata-Binding Protein - Surfaces Required for Activated Transcription in Human-Cells. Journal of Cellular Biochemistry, Supp (18C). p. 38. ISSN 0730-2312

Das, G., Herr, W. (November 1993) Enhanced activation of the human histone H2B promoter by an Oct-1 variant generated by alternative splicing. J Biol Chem, 268 (33). pp. 25026-32. ISSN 0021-9258 (Print)

Wilson, A. C., LaMarco, K., Peterson, M. G., Herr, W. (July 1993) The VP16 accessory protein HCF is a family of polypeptides processed from a large precursor protein. Cell, 74 (1). pp. 115-25. ISSN 0092-8674 (Print)

Wilson, A. C., Cleary, M. A., Lai, J. S., LaMarco, K., Peterson, M. G., Herr, W. (June 1993) Combinatorial control of transcription: the herpes simplex virus VP16-induced complex. Cold Spring Harb Symp Quant Biol, 58. pp. 167-78. ISSN 0091-7451 (Print)

Sturm, R. A., Cassady, J. L., Das, G., Romo, A., Evans, G. A. (May 1993) Chromosomal Structure and Expression of the Human Otf1 Locus Encoding the Oct-1 Protein. Genomics, 16 (2). pp. 333-341. ISSN 0888-7543

Assamunt, N., Mortishiresmith, R. J., Aurora, R., Herr, W., Wright, P. E. (April 1993) The Solution Structure of the Oct-1 Pou-Specific Domain Reveals a Striking Similarity to the Bacteriophage-Lambda Repressor DNA-Binding Domain. Cell, 73 (1). pp. 193-205. ISSN 0092-8674

Herr, W. (February 1993) The Sv40 Enhancer - Transcriptional Regulation through a Hierarchy of Combinatorial Interactions. Seminars in Virology, 4 (1). pp. 3-13. ISSN 1044-5773

Cleary, M. A., Stern, S., Tanaka, M., Herr, W. (January 1993) Differential positive control by Oct-1 and Oct-2: activation of a transcriptionally silent motif through Oct-1 and VP16 corecruitment. Genes Dev, 7 (1). pp. 72-83. ISSN 0890-9369 (Print)

Cleary, M. A., Stern, S., Tanaka, M., Herr, W. (January 1993) Selective Positive Control of a Homeodomain Protein - Vp16 Recruits Oct-1 but Not Oct-2 to an Oct-U Responsive Site. Journal of Cellular Biochemistry, 53 (s17B). p. 104. ISSN 0730-2312

Lai, J. S., Cleary, M. A., Herr, W. (January 1993) A Single Amino-Acid Exchange Transfers Vp16-Induced Positive Control from the Oct-1 to the Oct-2 Homeodomain. Journal of Cellular Biochemistry, 53 (17B). p. 81. ISSN 0730-2312

Thomann, W., Herr, W. (January 1993) Transcriptional Activation of Messenger-Rna Promoters by the Octamer Motif in Nonlymphoid Cells. Journal of Cellular Biochemistry, 53 (17A). p. 94. ISSN 0730-2312

Phares, W., Franza, B. R., Herr, W. (December 1992) The Kb Enhancer Motifs in Human-Immunodeficiency-Virus Type-1 and Simian Virus-40 Recognize Different Binding Activities in Human Jurkat and H9 T-Cells - Evidence for Nf-Kb-Independent Activation of the Kb Motif. Journal of Virology, 66 (12). pp. 7490-7498. ISSN 0022-538X

Lai, J. S., Cleary, M. A., Herr, W. (November 1992) A single amino acid exchange transfers VP16-induced positive control from the Oct-1 to the Oct-2 homeo domain. Genes Dev, 6 (11). pp. 2058-65. ISSN 0890-9369 (Print)0890-9369 (Linking)

Lai, J. S., Herr, W. (August 1992) Ethidium bromide provides a simple tool for identifying genuine DNA-independent protein associations. Proc Natl Acad Sci U S A, 89 (15). pp. 6958-62. ISSN 0027-8424 (Print)0027-8424 (Linking)

Tanaka, M., Lai, J. S., Herr, W. (February 1992) Promoter-selective activation domains in Oct-1 and Oct-2 direct differential activation of an snRNA and mRNA promoter. Cell, 68 (4). pp. 755-67. ISSN 0092-8674 (Print)0092-8674 (Linking)

Aurora, R., Herr, W. (February 1992) Segments of the POU domain influence one another's DNA-binding specificity. Mol Cell Biol, 12 (2). pp. 455-67. ISSN 0270-7306 (Print)0270-7306 (Linking)

Aurora, R., Herr, W., Porter, D., Knutson, J. R., Hensley, P. (January 1992) Fluorescence Analysis of the Recognition of DNA Target Sequences by Oct-1, a Pou Class Homeodomain Protein. Faseb Journal, 6 (1). A487-A487. ISSN 0892-6638

Stern, S., Herr, W. (December 1991) The herpes simplex virus trans-activator VP16 recognizes the Oct-1 homeo domain: evidence for a homeo domain recognition subdomain. Genes Dev, 5 (12B). pp. 2555-66. ISSN 0890-9369 (Print)0890-9369 (Linking)

Phares, W., Herr, W. (May 1991) Functional similarities between human immunodeficiency virus type 1 and simian virus 40 kappa B proto-enhancers. J Virol, 65 (5). pp. 2200-10. ISSN 0022-538X (Print)0022-538X (Linking)

Herr, W. (April 1991) Gene activation. An agent of suppression. Nature, 350 (6319). pp. 554-5. ISSN 0028-0836 (Print)0028-0836 (Linking)

Ondek, B., Herr, W. (March 1991) Stable growth of simian virus 40 recombinants containing multimerized enhancers. J Virol, 65 (3). pp. 1596-9. ISSN 0022-538X (Print)0022-538X (Linking)

Stern, S., Herr, W. (1991) Interactions of the Transcriptional Transactivator Vp16 with the Oct-1 Homeodomain DNA and Hcf. Journal of Biomolecular Structure & Dynamics, 8 (6). A217.

Herr, W., Aurora, R., Cleary, M., Das, G., Stern, S., Tanaka, M. (1991) Mechanisms of Transcriptional Activation by Pou Homeodomain Proteins Oct-1 and Oct-2. Journal of Cellular Biochemistry, 47 (Suppl ). p. 162.

Aurora, R., Herr, W. (1991) Oct-1 Binds to Diverse Target Sequences through Interactions with Multiple Regions of the Pou-Domain. Journal of Cellular Biochemistry, 47 (Suppl ). p. 170.

Clouston, W. M. (November 1990) The angiotensinogen gene of Swiss mice is closely linked to a retrovirus-like element. DNA and Cell Biology, 9 (9). pp. 623-630. ISSN 1044-5498

Hsieh, C. L., Sturm, R., Herr, W., Francke, U. (April 1990) The gene for the ubiquitous octamer-binding protein Oct-1 is on human chromosome 1, region cen-q32, and near Ly-22 and Ltw-4 on mouse chromosome 1. Genomics, 6 (4). pp. 666-672. ISSN 0888-7543

Tanaka, M., Herr, W. (February 1990) Differential transcriptional activation by Oct-1 and Oct-2: interdependent activation domains induce Oct-2 phosphorylation. Cell, 60 (3). pp. 375-86. ISSN 0092-8674 (Print)0092-8674 (Linking)

Phares, W., Franza, R., Herr, W. (1990) Relationship between the Kb Sites in the Hiv and Sv-40 Transcriptional Enhancers. Journal of Cellular Biochemistry, 44 (S14D). p. 125.

Stern, S., Tanaka, M., Herr, W. (October 1989) The Oct-1 homoeodomain directs formation of a multiprotein-DNA complex with the HSV transactivator VP16. Nature, 341 (6243). pp. 624-30. ISSN 1476-4687

Sturm, R. A., Herr, W. (December 1988) The POU domain is a bipartite DNA-binding structure. Nature, 336 (6199). pp. 601-4. ISSN 0028-0836

Sturm, R. A., Das, G., Herr, W. (December 1988) The ubiquitous octamer-binding protein Oct-1 contains a POU domain with a homeo box subdomain. Genes Dev, 2 (12A). pp. 1582-99. ISSN 0890-9369

Baumruker, T., Sturm, R., Herr, W. (November 1988) OBP100 binds remarkably degenerate octamer motifs through specific interactions with flanking sequences. Genes Dev, 2 (11). pp. 1400-13. ISSN 0890-9369

Shepard, A., Clarke, J., Herr, W. (September 1988) Simian virus 40 Revertant Enhancers Exhibit Restricted Host Ranges for Enhancer Function. Journal of Virology, 62 (9). pp. 3364-3370. ISSN 0022-538X

Ondek, B., Gloss, L., Herr, W. (April 1988) Sv-40 Enhancer Elements Are Composed on Interchangeable Subunits. Journal of Cellular Biochemistry , 38 (S12D). p. 217. ISSN 0733-1959

Book Section

Herr, W. (1991) Regulation of Eukaryotic Rna Polymerase Ii Transcription by Sequence-Specific DNA-Binding Proteins. In: The hormonal control of gene transcription. Molecular aspects of cellular regulation, 6 . Elsevier Science Publishers, Amsterdam, pp. 25-26. ISBN 0444802258

Thesis

Mangone, M. (March 2006) Analysis of the HCF-1 basic region and its role in sustaining cell proliferation. PhD thesis, Cold Spring Harbor Laboratory.

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