Svoboda, Karel Publications

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Svoboda, Karel

Number of items at this level: 88.

Paper

Oviedo, H. V., Bureau, I., Svoboda, K., Zador, A. M. (2010) The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nature Neuroscience, 13 (11). pp. 1413-1420. ISSN 1097-6256

Wilbrecht, L., Holtmaat, A., Wright, N., Fox, K., Svoboda, K. (2010) Structural plasticity underlies experience-dependent functional plasticity of cortical circuits. J Neurosci, 30 (14). pp. 4927-4932. ISSN 1529-2401 (Electronic) 0270-6474 (Linking)

Holtmaat, A., Bonhoeffer, T., Chow, D. K., Chuckowree, J., De Paola, V., Hofer, S. B., Hubener, M., Keck, T., Knott, G., Lee, W. C., Mostany, R., Mrsic-Flogel, T. D., Nedivi, E., Portera-Cailliau, C., Svoboda, K., Trachtenberg, J. T., Wilbrecht, L. (2009) Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat Protoc, 4 (8). pp. 1128-44. ISSN 1750-2799 (Electronic)

Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., Haber, S. N., Hawrylycz, M., Herrera, D. G., Hilgetag, C. C., Huang, Z. J., Jones, A., Jones, E. G., Karten, H. J., Kleinfeld, D., Kotter, R., Lester, H. A., Lin, J. M., Mensh, B. D., Mikula, S., Panksepp, J., Price, J. L., Safdieh, J., Saper, C. B., Schiff, N. D., Schmahmann, J. D., Stillman, B. W., Svoboda, K., Swanson, L. W., Toga, A. W., Van Essen, D. C., Watson, J. D., Mitra, P. P. (2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology, 5 (3). e1000334. ISSN 1553734X

Zito, K., Scheuss, V., Knott, G., Hill, T., Svoboda, K. (2009) Rapid Functional Maturation of Nascent Dendritic Spines. Neuron, 61 (2). pp. 247-258.

Harvey, C. D., Ehrhardt, A. G., Cellurale, C., Zhong, H., Yasuda, R., Davis, R. J., Svoboda, K. (2008) A genetically encoded fluorescent sensor of ERK activity. Proc Natl Acad Sci U S A, 105 (49). pp. 19264-9.

Harvey, C. D., Yasuda, R., Zhong, H., Svoboda, K. (2008) The spread of ras activity triggered by activation of a single dendritic spine. Science, 321 (5885). pp. 136-40.

Bureau, I., Shepherd, G. M., Svoboda, K. (2008) Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice. J Neurosci, 28 (20). pp. 5178-88.

Mao, T., O'Connor, D. H., Scheuss, V., Nakai, J., Svoboda, K. (2008) Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. PLoS ONE, 3 (3). e1796.

Huber, D., Petreanu, L., Ghitani, N., Ranade, S., Hromadka, T., Mainen, Z., Svoboda, K. (2008) Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature, 451 (7174). pp. 61-4.

Harvey, C. D., Svoboda, K. (2007) Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature, 450 (7173). pp. 1195-1200. ISSN 0028-0836

Sato, T. R., Gray, N. W., Mainen, Z. F., Svoboda, K. (2007) The Functional Microarchitecture of the Mouse Barrel Cortex. PLoS Biology, 5 (7). e189.

Petreanu, L. T., Huber, D., Sobczyk, A., Svoboda, K. (2007) Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections. Nat Neurosci, 10 (5). pp. 663-668. ISSN 1097-6256

Sobczyk, A., Svoboda, K. (2007) Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ current. Neuron, 53 (1). pp. 17-24. ISSN 0896-6273 (Print)

Bureau, I., Shepherd, G., Svoboda, K. (2006) Defects in the developing cortical circuits of fmr1 mutant mice. International Journal of Developmental Neuroscience, 24 (8). p. 480. ISSN 0736-5748

Bureau, I., von Saint Paul, F., Svoboda, K. (2006) Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex. PLoS Biology, 4 (12). pp. 2361-2371. ISSN 1544-9173

Gray, N. W., Weimer, R. M., Bureau, I., Svoboda, K. (2006) Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. PLoS Biol, 4 (11). e370. ISSN 1545-7885 (Electronic)

Knott, G. W., Holtmaat, A. J. G. D., Wilbrecht, L., Welker, E., Svoboda, K. (2006) Spine growth precedes synapse formation in the adult neocortex in vivo. Nature Neuroscience, 9 (9). pp. 1117-1124. ISSN 10976256

Scheuss, V., Yasuda, R., Sobczyk, A., Svoboda, K. (2006) Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. J Neurosci, 26 (31). pp. 8183-94. ISSN 1529-2401 (Electronic)

Holtmaat, A. J. G. D., Wilbrecht, L., Knott, G. W., Welker, E., Svoboda, K. (2006) Experience-dependent and cell-type-specific spine growth in the neocortex. Nature, 441 (7096). pp. 979-83. ISSN 1476-4687 (Electronic)

Svoboda, K., Yasuda, R. (2006) Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron, 50 (6). pp. 823-39. ISSN 0896-6273 (Print)

De Paola, V., Holtmaat, A. J. G. D., Knott, G. W., Song, S., Wilbrecht, L., Caroni, P., Svoboda, K. (2006) Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron, 49 (6). pp. 861-75. ISSN 0896-6273 (Print)

Yasuda, Ryohei, Harvey, Christopher D., Zhong, Haining, Sobczyk, Aleksander, Van Aelst, Linda, Svoboda, Karel (2006) Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature Neuroscience, 9 (2). pp. 283-291. ISSN 10976256

Karpova, A. Y., Tervo, D. G., Gray, N. W., Svoboda, K. (2005) Rapid and reversible chemical inactivation of synaptic transmission in genetically targeted neurons. Neuron, 48 (5). pp. 727-35. ISSN 0896-6273 (Print)

Portera-Cailliau, Carlos, Weimer, Robby M., De Paola, Vincenzo, Caroni, Pico, Svoboda, Karel (2005) Diverse modes of axon elaboration in the developing neocortex. PLoS Biol, 3 (8). e272. ISSN 1545-7885 (Electronic)

Sobczyk, A., Scheuss, V., Svoboda, K. (2005) NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. J Neurosci, 25 (26). pp. 6037-46. ISSN 1529-2401 (Electronic)

Shepherd, G. M., Svoboda, K. (2005) Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. J Neurosci, 25 (24). pp. 5670-9. ISSN 0270-6474

Egger, V., Svoboda, K., Mainen, Z. F. (2005) Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. J Neurosci, 25 (14). pp. 3521-30. ISSN 1529-2401 (Electronic)

Holtmaat, A. J. G. D., Trachtenberg, J. T., Wilbrecht, L., Shepherd, G. M., Zhang, Xi., Knott, G. W., Svoboda, Karel. (2005) Transient and persistent dendritic spines in the neocortex in vivo. Neuron, 45 (2). pp. 279-91. ISSN 0896-6273 (Print)

Di Cristo, G., Wu, C., Chattopadhyaya, B., Ango, F., Knott, G., Welker, E., Svoboda, K., Huang, Z. J. (2004) Subcellular domain-restricted GABAergic innervation in primary visual cortex in the absence of sensory and thalamic inputs. Nature Neuroscience, 7 (11). pp. 1184-6. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Pologruto, T. A., Yasuda, R., Svoboda, K. (2004) Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. J Neurosci, 24 (43). pp. 9572-9. ISSN 1529-2401 (Electronic)

Zito, K., Knott, G., Shepherd, G. M., Shenolikar, S., Svoboda, K. (2004) Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron, 44 (2). pp. 321-34. ISSN 0896-6273 (Print)

Chklovskii, D. B., Mel, B. W., Svoboda, K. (2004) Cortical rewiring and information storage. Nature, 431 (7010). pp. 782-788. ISSN 0028-0836

Brecht, M., Fee, M. S., Garaschuk, O., Helmchen, F., Margrie, T. W., Svoboda, K., Osten, P. (2004) Novel approaches to monitor and manipulate single neurons in vivo. Journal of Neuroscience, 24 (42). pp. 9223-9227. ISSN 0270-6474

Svoboda, K. (2004) Do spines and dendrites distribute dye evenly? Trends in Neurosciences, 27 (8). pp. 445-446. ISSN 0166-2236

Maravall, M., Stern, E. A., Svoboda, K. (2004) Development of intrinsic properties and excitability of layer 2/3 pyramidal neurons during a critical period for sensory maps in rat barrel cortex. J Neurophysiol, 92 (1). pp. 144-56. ISSN 0022-3077 (Print)

Wang, Y. L., Guo, H. F., Pologruto, T. A., Hannan, F., Hakker, I., Svoboda, K., Zhong, Y. (2004) Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. Journal of Neuroscience, 24 (29). pp. 6507-6514. ISSN 0270-6474

Bureau, I., Shepherd, G. M., Svoboda, K. (2004) Precise development of functional and anatomical columns in the neocortex. Neuron, 42 (5). pp. 789-801. ISSN 0896-6273 (Print)

Maravall, M., Koh, I. Y., Lindquist, W. B., Svoboda, K. (2004) Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortex. Cereb Cortex, 14 (6). pp. 655-64. ISSN 1047-3211 (Print)

Nimchinsky, E. A., Yasuda, R., Oertner, T. G., Svoboda, K. (2004) The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. J Neurosci, 24 (8). pp. 2054-64. ISSN 1529-2401 (Electronic)

Yasuda, R., Nimchinsky, E. A., Scheuss, V., Pologruto, T. A., Oertner, T. G., Sabatini, B. L., Svoboda, K. (2004) Imaging calcium concentration dynamics in small neuronal compartments. Sci STKE, 2004 (219). pl5. ISSN 1525-8882 (Electronic)

Svoboda, K., Ugurbil, K. (2003) New technologies: probing neurons and their networks - Editorial Overview. Current Opinion in Neurobiology, 13 (5). pp. 568-569. ISSN 0959-4388

Yasuda, R., Sabatini, B. L., Svoboda, K. (2003) Plasticity of calcium channels in dendritic spines. Nature Neuroscience, 6 (9). pp. 948-55. ISSN 1097-6256

Egger, V., Svoboda, K., Mainen, Z. F. (2003) Mechanisms of lateral inhibition in the olfactory bulb: Efficiency and modulation of spike-evoked calcium influx into granule cells. Journal of Neuroscience, 23 (20). pp. 7551-7558. ISSN 0270-6474

Pologruto, T. A., Sabatini, B. L., Svoboda, K. (2003) ScanImage: flexible software for operating laser scanning microscopes. Biomedical Engineering Online, 2. p. 13. ISSN 1475-925X (Electronic)

Shepherd, G. M., Pologruto, T. A., Svoboda, K. (2003) Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron, 38 (2). pp. 277-89. ISSN 0896-6273 (Print)

Takahashi, T., Svoboda, K., Malinow, R. (2003) Experience strengthening transmission by driving AMPA receptors into synapses. Science, 299 (5612). pp. 1585-1588. ISSN 0036-8075

Svoboda, K., Yasuda, R., Sabatini, B. (2003) Using [Ca2+] imaging to probe synaptic channels at the level of single molecules. Biophysical Journal, 84 (2). 479A-479A. ISSN 0006-3495

Trachtenberg, J. T., Chen, B. E., Knott, G. W., Feng, G. P., Sanes, J. R., Welker, E., Svoboda, K. (2002) Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature, 420 (6917). pp. 788-794. ISSN 0028-0836

Zito, K., Svoboda, K. (2002) Activity-dependent synaptogenesis in the adult mammalian cortex. Neuron, 35 (6). pp. 1015-1017. ISSN 0896-6273

Oertner, T. G., Svoboda, K. (2002) Subliminal messages in hippocampal pyramidal cells. Journal of Physiology, 543 (2). p. 397. ISSN 0022-3751

Oertner, T. G., Sabatini, B. L., Nimchinsky, E. A., Svoboda, K. (2002) Facilitation at single synapses probed with optical quantal analysis. Nature Neuroscience, 5 (7). pp. 657-664. ISSN 1097-6256

Koh, I. Y. Y., Lindquist, W. B., Zito, K., Nimchinsky, E. A., Svoboda, K. (2002) An image analysis algorithm for dendritic spines. Neural Computation, 14 (6). pp. 1283-1310. ISSN 0899-7667

Sabatini, B. L., Oertner, T. G., Svoboda, K. (2002) The life cycle of Ca2+ ions in dendritic spines. Neuron, 33 (3). pp. 439-452. ISSN 0896-6273

Nimchinsky, E. A., Sabatini, B. L., Svoboda, K. (2002) Structure and function of dendritic spines. Annual Review of Physiology, 64. pp. 313-353. ISSN 0066-4278

O'Donnell, W. T., Zito, K., Burbach, B., Svoboda, K., Warren, S. T. (2001) Identification of genes differentially expressed in wildtype and Fmr1 knockout mouse barrel cortex. American Journal of Human Genetics, 69 (4). p. 577. ISSN 0002-9297

Stern, E. A., Maravall, M., Svoboda, K. (2001) Rapid development and plasticity of layer 2/3 maps in rat barrel cortex in vivo. Neuron, 31 (2). pp. 305-315. ISSN 0896-6273

Nimchinsky, E. A., Oberlander, A. M., Svoboda, K. (2001) Abnormal development of dendritic spines in FMR1 knock-out mice. Journal of Neuroscience, 21 (14). pp. 5139-5146. ISSN 0270-6474

Sabatini, B. L., Maravall, M., Svoboda, K. (2001) Ca2+ signaling in dendritic spines. Current Opinion in Neurobiology, 11 (3). pp. 349-356. ISSN 0959-4388

Wang, Y. L., Wright, N. J. D., Guo, H. F., Xie, Z. P., Svoboda, K., Malinow, R., Smith, D. P., Zhong, Y. (2001) Genetic manipulation of the odor-evoked distributed neural activity in the Drosophila mushroom body. Neuron, 29 (1). pp. 267-276. ISSN 0896-6273

Sabatini, B. L., Svoboda, K. (2000) Analysis of calcium channels in single spines using optical fluctuation analysis. Nature, 408 (6812). pp. 589-593. ISSN 0028-0836

Chen, B. E., Lendvai, B., Nimchinsky, E. A., Burbach, B., Fox, K., Svoboda, K. (2000) Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo. Learning & Memory, 7 (6). pp. 433-441. ISSN 1072-0502

Cox, C. L., Denk, W., Tank, D. W., Svoboda, K. (2000) Action potentials reliably invade axonal arbors of rat neocortical neurons. Proceedings of the National Academy of Sciences of the United States of America, 97 (17). pp. 9724-9728. ISSN 0027-8424

Lendvai, B., Chen, B., Svoboda, K. (2000) Sensory deprivation induces plasticity of dendritic spines in layer 2/3 of the developing rat barrel cortex in vivo. Journal of Physiology, 526. 63P-63P. ISSN 0022-3751

Maravall, M., Mainen, Z. F., Sabatini, B. L., Svoboda, K. (2000) Estimating intracellular calcium concentrations and buffering without wavelength ratioing. Biophysical Journal, 78 (5). pp. 2655-2667. ISSN 0006-3495

Lendvai, B., Stern, E. A., Chen, B., Svoboda, K. (2000) Experience-dependent plasticity of dendritic spines in the developing rat barrel cortex in vivo. Nature, 404 (6780). pp. 876-881. ISSN 0028-0836

Helmchen, F., Svoboda, K., Denk, W., Tank, D. W. (1999) In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons. Nature Neuroscience, 2 (11). pp. 989-96. ISSN 1097-6256

Shi, S. H., Hayashi, Y., Petralia, R. S., Zaman, S. H., Wenthold, R. J., Svoboda, K., Malinow, R. (1999) Rapid spine delivery and redistribution of AMPA receptors after synaptic NMDA receptor activation. Science, 284 (5421). pp. 1811-6. ISSN 0036-8075 (Print)

Mainen, Z. F., Maletic-Savatic, M., Shi, S. H., Hayashi, Y., Malinow, R., Svoboda, K. (1999) Two-photon imaging in living brain slices. Methods, 18 (2). pp. 231-39. ISSN 1046-2023 (Print)

Mainen, Z. F., Malinow, R., Svoboda, K. (1999) Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated. Nature, 399 (6732). pp. 151-5. ISSN 0028-0836 (Print)

Maletic-Savatic, M., Malinow, R., Svoboda, K. (1999) Rapid dendritic morphogenesis in CA1 hippocampal dendrites induced by synaptic activity. Science, 283 (5409). pp. 1923-7. ISSN 0036-8075 (Print)

Svoboda, K., Mainen, Z. F. (1999) Synaptic [Ca2+]: intracellular stores spill their guts. Neuron, 22 (3). pp. 427-30. ISSN 0896-6273 (Print)

Svoboda, K., Helmchen, F., Denk, W., Tank, D. W. (1999) Spread of dendritic excitation in layer 2/3 pyramidal neurons in rat barrel cortex in vivo. Nature Neuroscience, 2 (1). pp. 65-73. ISSN 1097-6256 (Print)

Svoboda, K. (1998) Shining light on spiny matters. Nature Neuroscience, 1 (2). pp. 93-4. ISSN 1097-6256

Denk, W., Svoboda, K. (1997) Photon upmanship: why multiphoton imaging is more than a gimmick. Neuron, 18 (3). pp. 351-7. ISSN 0896-6273

Svoboda, K., Denk, W., Kleinfeld, D., Tank, D. W. (1997) In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature, 385 (6612). pp. 161-5. ISSN 0028-0836

Svoboda, K. (1996) New insights into the workings of the ultimate swimming machine. Biophysical Journal, 71 (2). pp. 539-40. ISSN 0006-3495

Denk, W., Yuste, R., Svoboda, K., Tank, D. W. (1996) Imaging calcium dynamics in dendritic spines. Curr Opin Neurobiol, 6 (3). pp. 372-8. ISSN 0959-4388

Svoboda, K., Tank, D. W., Denk, W. (1996) Direct measurement of coupling between dendritic spines and shafts. Science, 272 (5262). pp. 716-9. ISSN 0036-8075

Yin, Hong, Wang, Michelle D., Svoboda, Karel, Landick, Robert, Block, Steven M., Gelles, Jeff (1995) Transcription against an applied force. Science, 270 (5242). pp. 1653-7. ISSN 0036-8075

Block, S. M., Svoboda, K. (1995) Analysis of high resolution recordings of motor movement. Biophys J, 68 (4 Supp). 230S-239S; discussion 239S. ISSN 0006-3495

Svoboda, K., Block, S. M. (1994) Force and velocity measured for single kinesin molecules. Cell, 77 (5). pp. 773-84. ISSN 0092-8674

Svoboda, K., Block, S. M. (1994) Biological applications of optical forces. Annu Rev Biophys Biomol Struct, 23. pp. 247-85. ISSN 1056-8700

Svoboda, Karel, Schmidt, Christoph F., Schnapp, Bruce J., Block, Steven M. (1993) Direct observation of kinesin stepping by optical trapping interferometry. Nature, 365 (6448). pp. 721-7. ISSN 0028-0836

Schmidt, Christoph F., Svoboda, Karel, Lei, Ning, Petsche, Irena B., Berman, Lonny E., Safinya, Cyrus R., Grest, Gary S. (1993) Existence of a flat phase in red cell membrane skeletons. Science, 259 (5097). pp. 952-5. ISSN 0036-8075

Svoboda, K., Schmidt, C. F., Branton, D., Block, S. M. (1992) Conformation and elasticity of the isolated red blood cell membrane skeleton. Biophys J, 63 (3). pp. 784-93. ISSN 0006-3495 (Print)0006-3495 (Linking)

Book Section

Chen, B., Trachtenberg, J.T., Holtmaat, A. J., Svoboda, K. (2005) Long-term, high-resolution imaging in the neocortex in vivo. In: Live cell imaging: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 423-424. ISBN 0879696826

Svoboda, K., Tank, D. W., Stepnoski, R. A. , Denk, W. (2000) Two-photon Imaging of Neuronal Function in the Neocortex In Vivo. In: Imaging neurons: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0-87969-542-0

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