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Paper

Yuan, Li, Chen, Xiaoyin, Zhan, Huiqing, Henry, Gilbert L, Zador, Anthony M (September 2024) Massive multiplexing of spatially resolved single neuron projections with axonal BARseq. Nature Communications, 15 (1). p. 8371. ISSN 2041-1723 (Public Dataset)

Shuvaev, Sergey, Lachi, Divyansha, Koulakov, Alexei, Zador, Anthony (September 2024) Encoding innate ability through a genomic bottleneck. Proceedings of the National Academy of Sciences of the United States of America, 121 (38). e2409160121. ISSN 0027-8424

Banerjee, Arkarup, Isko, Emily, Harpole, Clifford, Zheng, Xiaoyue, Zhan, Huiqing, Davis, Martin, Zador, Anthony (September 2024) Selective expansion of motor cortical projections in the evolution of vocal novelty. bioRxiv. ISSN 2692-8205 (Submitted)

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael M, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, International Brain Laboratory, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (July 2024) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools. Nature Methods, 21 (7). pp. 1316-1328. ISSN 1548-7091

Chen, Xiaoyin, Fischer, Stephan, Rue, Mara CP, Zhang, Aixin, Mukherjee, Didhiti, Kanold, Patrick O, Gillis, Jesse, Zador, Anthony M (April 2024) Whole-cortex in situ sequencing reveals input-dependent area identity. Nature. ISSN 0028-0836

Zador, Anthony (February 2024) The origins of COSYNE: Building a community. The Transmitter. ISSN 2770-0976

Zhang, Anqi, Zador, Anthony M (December 2023) Neurons in the primary visual cortex of freely moving rats encode both sensory and non-sensory task variables. PLoS Biology, 21 (12). e3002384. ISSN 1545-7885

Funamizu, A, Marbach, F, Zador, AM (October 2023) Stable sound decoding despite modulated sound representation in the auditory cortex. Current Biology, 33 (20). 4470-4483.e7. ISSN 0960-9822

Funamizu, Akihiro, Marbach, Fred, Zador, Anthony M (September 2023) Stable sound decoding despite modulated sound representation in the auditory cortex. bioRxiv. (Submitted)

Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474

Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (April 2023) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. bioRxiv. ISSN 2692-8205 (Submitted)

Zador, Anthony, Escola, Sean, Richards, Blake, Ölveczky, Bence, Bengio, Yoshua, Boahen, Kwabena, Botvinick, Matthew, Chklovskii, Dmitri, Churchland, Anne, Clopath, Claudia, DiCarlo, James, Ganguli, Surya, Hawkins, Jeff, Körding, Konrad, Koulakov, Alexei, LeCun, Yann, Lillicrap, Timothy, Marblestone, Adam, Olshausen, Bruno, Pouget, Alexandre, Savin, Cristina, Sejnowski, Terrence, Simoncelli, Eero, Solla, Sara, Sussillo, David, Tolias, Andreas S, Tsao, Doris (March 2023) Catalyzing next-generation Artificial Intelligence through NeuroAI. Nature Communications, 14 (1). p. 1597. ISSN 2041-1723

Yuan, Li, Chen, Xiaoyin, Zhan, Huiqing, Gilbert, Henry L, Zador, Anthony M (February 2023) Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq. bioRxiv. (Submitted)

Acerbi, L, Aguillon-Rodriguez, V, Ahmadi, M, Amjad, J, Angelaki, D, Arlandis, J, Ashwood, ZC, Banga, K, Barrell, H, Bayer, HM, Benson, J, Benson, B, Bhagat, J, Birman, D, Bougrova, K, Boussard, J, Bruijns, SA, Carandini, M, Catarino, J, Cazettes, F, Dan, Y, Davatolagh, F, Dayan, P, Denève, S, Dong, LL, Engel, T, Fabbri, M, Fiete, I, Findling, C, Freitas-Silva, L, Ganguli, S, Gercek, B, Ghani, N, Gordeliy, I, Haetzel, LM, Hausser, M, Hiratani, N, Hofer, S, Hu, F, Huber, F, Hurwitz, C, Khanal, A, Krasniak, CS, Krishnagopal, S, Krumin, M, Langdon, C, Latham, P, Lau, P, Lee, H, Liu, A, Mainen, ZF, Vergara, HM, Mcgrory, C, McMannon, B, Meijer, GT, Melin, M, Meshulam, L, Miska, NJ, Mitelut, C, Mohammadi, Z, Mrsic-Flogel, T, Murakami, M, Noel, JP, Nylund, K, Vazquez, AP, Paninski, L, Pezzotta, A, Picard, S, Pillow, JW, Pouget, A, Roth, N, Roy, NA, Saniee, K, Schaeffer, R, Shi, Y, Socha, KZ, Soitu, C, Svoboda, K, Taheri, M, Tessereau, C, Urai, AE, Varol, E, Wells, MJ, Whiteway, MR, Windolf, C, Witten, I, Wool, LE, Zador, AM, Bonacchi, N, Chapuis, GA, Churchland, AK, DeWitt, EEJ, Faulkner, M, Harris, KD, Huntenburg, JM, Hunter, M, Laranjeira, IC, Rossant, C, Sasaki, M, Schartner, MM (January 2023) A modular architecture for organizing, processing and sharing neurophysiology data. Nature Methods, 20 (3). pp. 403-407. ISSN 1548-7091 (Public Dataset)

International Brain Laboratory, Aguillon, Valeria, Angelaki, Dora E, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana B, Wool, Lauren, Zador, Anthony M (October 2022) Correction: Standardized and reproducible measurement of decision-making in mice. eLife, 11. e84310. ISSN 2050-084X

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (October 2022) High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Cell, 185 (22). 4117-4134.e28. ISSN 0092-8674

Koch, Christof, Svoboda, Karel, Bernard, Amy, Basso, Michele A, Churchland, Anne K, Fairhall, Adrienne L, Groblewski, Peter A, Lecoq, Jérôme A, Mainen, Zachary F, Mathis, Mackenzie W, Olsen, Shawn R, Phillips, John W, Pouget, Alexandre, Saxena, Shreya, Siegle, Josh H, Zador, Anthony M (October 2022) Next-generation brain observatories. Neuron. ISSN 0896-6273

Goodwin, Daniel R, Vaughan, Alex, Leible, Daniel, Alon, Shahar, Henry, Gilbert L, Cheng, Anne, Chen, Xiaoyin, Zhang, Ruihan, Xue, Andrew G, Wassie, Asmamaw T, Sinha, Anubhav, Bando, Yosuke, Kajita, Atsushi, Marblestone, Adam H, Zador, Anthony M, Boyden, Edward S, Church, George M, Kohman, Richie E (July 2022) Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics. bioRxiv. (Submitted)

Richards, Blake, Tsao, Doris, Zador, Anthony (July 2022) The application of artificial intelligence to biology and neuroscience. Cell, 185 (15). pp. 2640-2643. ISSN 0092-8674

Zhang, Anqi, Zador, Anthony M (July 2022) Diversity and task-dependence of task representations in V1 during freely-moving decisions. bioRxiv. (Submitted)

Chen, Xiaoyin, Fischer, Stephan, Zhang, Aixin, Gillis, Jesse, Zador, Anthony (2022) Modular cell type organization of cortical areas revealed by in situ sequencing. bioRxiv. (Submitted)

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine S, Chen, Xiaoyin, Wang, Quanxin, Foster, Nicholas N, Li, Anan, Narasimhan, Arun, Hirokawa, Karla E, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael S, Chon, Uree, Wheeler, Diek W, Li, Xiangning, Wang, Yun, Naeemi, Maitham, Xie, Peng, Liu, Lijuan, Kelly, Kathleen, An, Xu, Attili, Sarojini M, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D'Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter A, Gou, Lin, Hahn, Joel D, Hatfield, Joshua T, Hintiryan, Houri, Huang, Junxiang Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Nicovich, Philip R, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong W, Wakemen, Wayne, Wang, Yimin, Yao, Shenqin, Yuan, Jing, Zhan, Huiqing, Zhu, Muye, Ng, Lydia, Zhang, Li I, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James C, Kim, Yongsoo, Chung, Kwanghun, Yang, X William, Peng, Hanchuan, Luo, Qingming, Mitra, Partha P, Zador, Anthony M, Zeng, Hongkui, Ascoli, Giorgio A, Josh Huang, Z, Osten, Pavel, Harris, Julie A, Dong, Hong-Wei (October 2021) Cellular anatomy of the mouse primary motor cortex. Nature, 598 (7879). pp. 159-166. ISSN 0028-0836

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (July 2021) Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain. PLoS Biology, 19 (7). e3001341. ISSN 1545-7885

International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X

Sun, Yu-Chi, Chen, Xiaoyin, Fischer, Stephan, Lu, Shaina, Zhan, Huiqing, Gillis, Jesse, Zador, Anthony M (May 2021) Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections. Nature Neuroscience. ISSN 1097-6256

Chen, Shuonan, Loper, Jackson, Chen, Xiaoyin, Vaughan, Alex, Zador, Anthony M, Paninski, Liam (March 2021) BARcode DEmixing through Non-negative Spatial Regression (BarDensr). PLoS Computational Biology, 17 (3). e1008256. ISSN 1553-734X

Ghosh, Sanchari, Zador, Anthony M (March 2021) Corticostriatal Plasticity Established by Initial Learning Persists after Behavioral Reversal. eNeuro, 8 (2). pp. 1-10. ISSN 2373-2822

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin, Kebschull, Justus, Zador, Anthony, Koulakov, Alexei, Albeanu, Dinu (2021) Wiring logic of the early rodent olfactory system revealed by high-throughput sequencing of single neuron projections. bioRxiv. (Submitted)

Kressel, A. M., Tsaava, T., Levine, Y. A., Chang, E. H., Addorisio, M. E., Chang, Q., Burbach, B. J., Carnevale, D., Lembo, G., Zador, A. M., Andersson, U., Pavlov, V. A., Chavan, S. S., Tracey, K. J. (November 2020) Identification of a brainstem locus that inhibits tumor necrosis factor. Proc Natl Acad Sci U S A, 117 (47). pp. 29803-29810. ISSN 0027-8424 (Print)0027-8424

Lu, Shaina, Ortiz, Cantin, Fürth, Daniel, Fischer, Stephan, Meletis, Konstantinos, Zador, Anthony, Gillis, Jesse (October 2020) Replicability of spatial gene expression atlas data from the adult mouse brain. bioRxiv. (Unpublished)

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine, Wang, Quanxin, Chen, Xiaoyin, Foster, Nicholas, Narasimhan, Arun, Li, Anan, Hirokawa, Karla, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael, Chon, Uree, Wheeler, Diek, Li, Xiangning, Wang, Yun, Kelly, Kathleen, An, Xu, Attili, Sarojini, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D’Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter, Gou, Lin, Hahn, Joel, Hatfield, Joshua, Hintiryan, Houri, Huang, Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Liu, Lijuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Naeemi, Maitham, Nicovich, Philip, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong, Wakemen, Wayne, Wang, Yimin, Xie, Peng, Yao, Shenqin, Yuan, Jin, Zhu, Muye, Ng, Lydia, Zhang, Li, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James, Kim, Yongsoo, Peng, Hanchuan, Chuang, Kwanghun, Yang, William, Luo, Qingming, Mitra, Partha, Zador, Anthony, Zeng, Hongkui, Ascoli, Giorgio, Huang, Josh, Osten, Pavel, Harris, Julie, Dong, Hong-Wei (October 2020) Cellular Anatomy of the Mouse Primary Motor Cortex. BioRxiv. (Unpublished)

Sun, Yu-Chi, Chen, Xiaoyin, Fischer, Stephan, Lu, Shaina, Gillis, Jesse, Zador, Anthony (August 2020) Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex. bioRxiv. (Unpublished)

Huang, Longwen, Kebschull, Justus M, Fürth, Daniel, Musall, Simon, Kaufman, Matthew T, Churchland, Anne K, Zador, Anthony M (July 2020) BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals. Cell, 182 (1). 177-188.e27. ISSN 0092-8674

Dore, K., Pao, Y., Soria Lopez, J., Aronson, S., Zhan, H., Ghosh, S., Merrill, S., Zador, A. M., Malinow, R., Kebschull, J. M. (January 2020) SYNPLA, a method to identify synapses displaying plasticity after learning. Proc Natl Acad Sci U S A, 117 (6). pp. 3214-3219. ISSN 0027-8424 (Public Dataset)

The International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolò, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Hausser, Michael, Hofer, Sonja, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Inês, Mainen, Zachary, Meijer, Guido, Miska, Nathaniel, Mrsic-Flogel, Thomas, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Sanders, Josh, Socha, Karolina, Terry, Rebecca, Urai, Anne, Vergara, Hernando, Wells, Miles, Wilson, Christian, Witten, Ilana, Wool, Lauren, Zador, Anthony (January 2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv. (Unpublished)

Chen, X., Sun, Y. C., Zhan, H., Kebschull, J. M., Fischer, S., Matho, K., Huang, Z. J., Gillis, J., Zador, A. M. (October 2019) High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing. Cell, 179 (3). 772-786.e19. ISSN 0092-8674 (Public Dataset)

Zador, A. M. (August 2019) A critique of pure learning and what artificial neural networks can learn from animal brains. Nat Commun, 10 (1). p. 3770. ISSN 2041-1723

Chen, Xiaoyin, Sun, Yu-Chi, Zhan, Huiqing, Kebschull, Justus, Fischer, Stephan, Matho, Katherine, Josh Huang, Z, Gillis, Jesse, Zador, Anthony (July 2019) High-throughput mapping of long-range neuronal projection using <i>in situ</i> sequencing. BioRxiv. (Unpublished)

Shuvaev, S. A., Baserdem, B., Zador, A. M., Koulakov, A. A. (April 2019) Network cloning using DNA barcodes. Proc Natl Acad Sci U S A, 116 (19). pp. 9610-9615. ISSN 0027-8424

Davidsson, M., Sellnow, R. C., Yonkers, R., Zador, A. M., Manfredsson, F. P. (April 2019) Serotonergic Hyperinnervation in Non-Motor Circuits in the Parkinsonian Rat. Cell Transplantation, 28 (4, SI). pp. 465-466. ISSN 0963-6897

Kebschull, J. M., Zador, A. M. (November 2018) Cellular barcoding: lineage tracing, screening and beyond. Nat Methods, 15 (11). pp. 871-879. ISSN 1548-7091

Huang, Longwen, Kebschull, Justus, Furth, Daniel, Musall, Simon, Kaufman, Matthew T., Churchland, Anne K., Zador, Anthony (September 2018) High-throughput mapping of mesoscale connectomes in individual mice. bioRxiv.

Han, Y., Kebschull, J. M., Campbell, R. A. A., Cowan, D., Imhof, F., Zador, A. M., Mrsic-Flogel, T. D. (April 2018) The logic of single-cell projections from visual cortex. Nature, 556 (7699). pp. 51-56. ISSN 0028-0836

Chen, X., Sun, Y. C., Church, G. M., Lee, J. H., Zador, A. M. (February 2018) Efficient in situ barcode sequencing using padlock probe-based BaristaSeq. Nucleic Acids Res, 46 (4). e22. ISSN 0305-1048

Peikon, I. D., Kebschull, J. M., Vagin, V. V., Ravens, D. I., Sun, Y. C., Brouzes, E., Correa, I. R., Bressan, D., Zador, A. M. (April 2017) Using high-throughput barcode sequencing to efficiently map connectomes. Nucleic Acids Res. ISSN 0305-1048

Shuvaev, Sergey A, Başerdem, Batuhan, Zador, Anthony, Koulakov, Alexei A (November 2016) Network cloning using DNA barcodes. arXiv. (Submitted)

Kebschull, Justus M, Garcia da Silva, Pedro, Reid, Ashlan P, Peikon, Ian D, Albeanu, Dinu F, Zador, Anthony M (September 2016) High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA. Neuron, 91 (5). pp. 975-987. ISSN 0896-6273 (Public Dataset)

Vogelstein, Joshua T, Amunts, Katrin, Andreou, Andreas, Angelaki, Dora, Ascoli, Giorgio, Bargmann, Cori, Burns, Randal, Cali, Corrado, Chance, Frances, Chun, Miyoung, Church, George, Cline, Hollis, Coleman, Todd, Rochefoucauld, Stephanie de La, Denk, Winfried, Elgoyhen, Ana Belen, Cummings, Ralph Etienne, Evans, Alan, Harris, Kenneth, Hausser, Michael, Hill, Sean, Inverso, Samuel, Jackson, Chad, Jain, Viren, Kass, Rob, Kasthuri, Bobby, Kiar, Gregory, Kording, Konrad, Koushika, Sandhya, Krakauer, John, Landis, Story, Layton, Jeff, Luo, Qingming, Marblestone, Adam, Markowitz, David, McArthur, Justin, Mensh, Brett, Milham, Michael, Mitra, Partha, Neskovic, Pedja, Nicolelis, Miguel, O'Brien, Richard, Oliva, Aude, Orban, Gergo, Peng, Hanchuan, Picchini-Schaffer, Alyssa, Picciotto, Marina, Poline, Jean-Baptiste, Poo, Mu-ming, Pouget, Alex, Raghavachari, Sri, Roskams, Jane, Sejnowski, Terry, Sommer, Fritz, Spruston, Nelson, Swanson, Larry, Toga, Arthur, Vogelstein, R Jacob, Yuste, Rafael, Zador, Anthony, Huganir, Richard, Miller, Michael (August 2016) Grand Challenges for Global Brain Sciences. arXiv. (Submitted)

Kebschull, J. M., Garcia da Silva, P., Zador, A. M. (May 2016) A New Defective Helper RNA to Produce Recombinant Sindbis Virus that Infects Neurons but does not Propagate. Front Neuroanat, 10. p. 56. ISSN 1662-5129 (Electronic)1662-5129 (Linking)

Kebschull, J. M., Zador, A. M. (December 2015) Sources of PCR-induced distortions in high-throughput sequencing data sets. Nucleic Acids Res, 43 (21). e143. ISSN 1362-4962 (Electronic)0305-1048 (Linking)

Lee, A. M., Tai, L. H., Zador, A., Wilbrecht, L. (June 2015) Between the primate and 'reptilian' brain: Rodent models demonstrate the role of corticostriatal circuits in decision making. Neuroscience, 296. pp. 66-74. ISSN 0306-4522

Xiong, Q., Znamenskiy, P., Zador, A. M. (May 2015) Selective corticostriatal plasticity during acquisition of an auditory discrimination task. Nature, 521 (7552). pp. 348-351. ISSN 0028-0836

Jaramillo, S., Zador, A. M. (September 2014) Mice and rats achieve similar levels of performance in an adaptive decision-making task. Frontiers in Systems Neuroscience, 8. Article no.173. ISSN 1662-5137

Oyibo, Hassana K., Znamenskiy, Petr, Oviedo, Hysell V., Zador, Anthony M. (September 2014) Long-term Cre-mediated retrograde tagging of neurons using a novel recombinant pseudorabies virus. Frontiers in Neuroanatomy, 8 (SEP). Art. no.86. ISSN 16625129

Livneh, U., Zador, A. (August 2014) Sensory systems: Sound processing takes motor control. Nature, 513 (7517). pp. 180-181. ISSN 0028-0836

Peikon, I. D., Gizatullina, D. I., Zador, A. M. (July 2014) In vivo generation of DNA sequence diversity for cellular barcoding. Nucleic Acids Res, 42 (16). ISSN 0305-1048

Jaramillo, S., Borges, K., Zador, A. M. (April 2014) Auditory Thalamus and Auditory Cortex Are Equally Modulated by Context during Flexible Categorization of Sounds. Journal of Neuroscience, 34 (15). pp. 5291-301. ISSN 0270-6474

Znamenskiy, P., Zador, A. M. (May 2013) Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination. Nature, 497. pp. 482-485. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Hromadka, T., Zador, A. M., DeWeese, M. R. (2013) Up states are rare in awake auditory cortex. Journal of Neurophysiology, 109 (8). pp. 1989-1995. ISSN 0022-3077

Yang, Y., Zador, A. M. (October 2012) Differences in sensitivity to neural timing among cortical areas. Journal of Neuroscience, 32 (43). pp. 15142-15147. ISSN 02706474

Zador, A. M., Dubnau, J., Oyibo, H. K., Zhan, H., Cao, G., Peikon, I. D. (October 2012) Sequencing the Connectome. PLoS Biology, 10 (10). ISSN 1544-9173

Xiong, Q., Oviedo, H. V., Trotman, L. C., Zador, A. M. (February 2012) PTEN Regulation of Local and Long-Range Connections in Mouse Auditory Cortex. Journal of Neuroscience, 32 (5). pp. 1643-52. ISSN 0270-6474

Jaramillo, E. S., Zador, A. M. (December 2010) The auditory cortex mediates the perceptual effects of acoustic temporal expectation. Nat Neurosci, 14 (2). pp. 246-51. ISSN 1546-1726 (Electronic) 1097-6256 (Linking)

Oviedo, H. V., Bureau, I., Svoboda, K., Zador, A. M. (October 2010) The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nature Neuroscience, 13 (11). pp. 1413-1420. ISSN 1097-6256

Asari, H., Zador, A. M. (August 2009) Long-Lasting Context Dependence Constrains Neural Encoding Models in Rodent Auditory Cortex. J Neurophysiol, 102 (5). pp. 2638-56.

Hromadka, T., Zador, A. M. (August 2009) Representations in auditory cortex. Current Opinion in Neurobiology, 19 (4). 430-433 . ISSN 0959-4388

Lima, S. Q., Hromadka, T., Znamenskiy, P., Zador, A. M. (July 2009) PINP: a new method of tagging neuronal populations for identification during in vivo electrophysiological recording. PLoS ONE, 4 (7). e6099. ISSN 1932-6203 (Electronic)

Otazu, G. H., Tai, L. H., Yang, Y., Zador, A. M. (May 2009) Engaging in an auditory task suppresses responses in auditory cortex. Nature Neuroscience, 12 (5). 646 - 654 . ISSN 1097-6256

Koulakov, A. A., Hromadka, T., Zador, A. M. (March 2009) Correlated Connectivity and the Distribution of Firing Rates in the Neocortex. J Neurosci, 29 (12). pp. 3685-3694. ISSN 0270-6474

Yang, Y., DeWeese, M. R., Otazu, G. H., Zador, A. M. (November 2008) Millisecond-scale differences in neural activity in auditory cortex can drive decisions. Nat Neurosci, 11 (11). pp. 1262-3. ISSN 1546-1726 (Electronic)

Hromádka, T., Deweese, M. R., Zador, A. M. (January 2008) Sparse representation of sounds in the unanesthetized auditory cortex. PLoS Biology, 6 (1). e16. ISSN 1545-7885 (Electronic)

Zador, A. M., Mombaerts, P. (August 2007) Neuronal circuitry and population activity. Current Opinion in Neurobiology, 17 (4). pp. 395-6. ISSN 0959-4388 (Print)

Hromádka, T., Zador, A. M. (July 2007) Toward the mechanisms of auditory attention. Hear Res, 229 (1-2). pp. 180-5. ISSN 0378-5955 (Print)

DeWeese, M. R., Zador, A. M. (November 2006) Non-Gaussian membrane potential dynamics imply sparse, synchronous activity in auditory cortex. J Neurosci, 26 (47). pp. 12206-18. ISSN 1529-2401 (Electronic)

Asari, H., Pearlmutter, B. A., Zador, A. M. (July 2006) Sparse representations for the cocktail party problem. Journal of Neuroscience, 26 (28). pp. 7477-7490. ISSN 02706474

DeWeese, M. R., Zador, A. M. (February 2006) Neurobiology: Efficiency measures. Nature, 439 (7079). pp. 920-921. ISSN 00280836

DeWeese, M. R., Hromádka, T., Zador, A. M. (November 2005) Reliability and representational bandwidth in the auditory cortex. Neuron, 48 (3). pp. 479-88. ISSN 0896-6273 (Print)

DeWeese, M. R., Zador, A. M. (October 2005) Neural gallops across auditory streams. Neuron, 48 (1). pp. 5-7. ISSN 0896-6273 (Print)

Malinow, R., Rumpel, S., Zador, A. M., Ledoux, J. (October 2005) AMPA receptor trafficking and GluR1 - Response. Science, 310 (5746). pp. 234-235. ISSN 0036-8075

Wehr, M., Zador, A. M. (August 2005) Synaptic mechanisms of forward suppression in rat auditory cortex. Neuron, 47 (3). pp. 437-45. ISSN 0896-6273 (Print)

Rumpel, S., LeDoux, J., Zador, A. M., Malinow, R. (April 2005) Postsynaptic receptor trafficking underlying a form of associative learning. Science, 308 (5718). pp. 83-8. ISSN 1095-9203 (Electronic)

Deweese, M. R., Zador, A. M. (September 2004) Shared and private variability in the auditory cortex. J Neurophysiol, 92 (3). pp. 1840-55. ISSN 0022-3077 (Print)

Machens, C. K., Wehr, M. S., Zador, A. M. (February 2004) Linearity of cortical receptive fields measured with natural sounds. J Neurosci, 24 (5). pp. 1089-100. ISSN 1529-2401 (Electronic)

Machens, C. K., Zador, A. M. (December 2003) Auditory modeling gets an edge. Journal of Neurophysiology, 90 (6). pp. 3581-3582. ISSN 0022-3077

Wehr, M., Zador, A. M. (November 2003) Balanced inhibition underlies tuning and sharpens spike timing in auditory cortex. Nature, 426 (6965). pp. 442-6. ISSN 1476-4687 (Electronic)

DeWeese, M. R., Wehr, M., Zador, A. M. (August 2003) Binary spiking in auditory cortex. Journal of Neuroscience, 23 (21). pp. 7940-7949. ISSN 0270-6474

Zador, A. M. (December 2001) Synaptic connectivity and computation. Nature Neuroscience, 4 (12). pp. 1157-1158. ISSN 1097-6256

Natschlger, T., Maass, W., Zador, A. M. (2001) Efficient temporal processing with biologically realistic dynamic synapses. Network: Computation in Neural Systems, 12 (1). pp. 75-87.

Zador, A. M. (November 2000) The basic unit of computation. Nat Neurosci, 3 Supp. p. 1167. ISSN 1097-6256 (Print)

deCharms, R. C., Zador, A. M. (2000) Neural representation and the cortical code. Annual Review of Neuroscience, 23. 613-+. ISSN 0147-006X

Maass, W., Zador, A. M. (1999) Dynamic stochastic synapses as computational units. Neural Computation, 11 (4). pp. 903-917. ISSN 08997667 (ISSN)

Reinagel, P., Zador, A. M. (1999) Natural scene statistics at the centre of gaze. Network: Computation in Neural Systems, 10 (4). pp. 341-350. ISSN 0954898X (ISSN)

Zador, A. (1999) Thalamocortical synapses: Sparse but stentorian. Neuron, 23 (2). pp. 198-200.

DeWeese, M., Zador, A. M. (1998) Asymmetric Dynamics in Optimal Variance Adaptation. Neural Computation, 10 (5). pp. 1179-1202. ISSN 08997667 (ISSN)

Burac̆as, G. T., Zador, A. M., DeWeese, M. R., Albright, T. D. (1998) Efficient Discrimination of Temporal Patterns by Motion-Sensitive Neurons in Primate Visual Cortex. Neuron, 20 (5). pp. 959-969. ISSN 0896-6273

Zador, A. M. (1998) Impact of synaptic unreliability on the information transmitted by spiking neurons. Journal of Neurophysiology, 79 (3). pp. 1219-1229. ISSN 00223077 (ISSN)

Stevens, C. F., Zador, A. M. (1998) Input synchrony and the irregular firing of cortical neurons. Nature Neuroscience, 1 (3). pp. 210-217. ISSN 10976256 (ISSN)

Zador, A. M., Dobrunz, L. E. (1997) Dynamic synapses in the cortex. Neuron, 19 (1). pp. 1-4.

Mainen, Z. F., Carnevale, N. T., Zador, A. M., Claiborne, B. J., Brown, T. H. (1996) Electrotonic architecture of hippocampal CA1 pyramidal neurons based on three-dimensional reconstructions. Journal of Neurophysiology, 76 (3). pp. 1904-1923. ISSN 00223077 (ISSN)

Smetters, D. K., Zador, A. (1996) Synaptic transmission: Noisy synapses and noisy neurons. Current Biology, 6 (10). pp. 1217-1218.

Bulsara, A. R., Zador, A. M. (1996) Threshold detection of wideband signals: A noise-induced maximum in the mutual information. Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 54 (3). R2185-R2188. ISSN 1063651X (ISSN)

Zador, A. M., Pearlmutter, B. A. (1996) VC Dimension of an Integrate-and-Fire Neuron Model. Neural Computation, 8 (3). pp. 611-624.

Stevens, C. F., Zador, A. (1995) The enigma of the brain. Current Biology, 5 (12). pp. 1370-1371.

Zador, A. M., Agmon-Snir, H., Segev, I. (1995) The morphoelectrotonic transform: A graphical approach to dendritic function. Journal of Neuroscience, 15 (3 I). pp. 1669-1682. ISSN 02706474 (ISSN)

Zador, A., Koch, C. (1994) Linearized models of calcium dynamics: Formal equivalence to the cable equation. Journal of Neuroscience, 14 (8). pp. 4705-4715. ISSN 02706474 (ISSN)

Koch, C., Zador, A. M. (1993) The function of dendritic spines: Devices subserving biochemical rather than electrical compartmentalization. Journal of Neuroscience, 13 (2). pp. 413-422. ISSN 02706474 (ISSN)

Koch, C., Zador, A. M., Brown, T. H. (1992) Dendritic spines: Convergence of theory and experiment. Science, 256 (5059). pp. 973-974. ISSN 00368075 (ISSN)

Zador, A. M., Koch, C., Brown, T. H. (1990) Biophysical model of a Hebbian synapse. Proceedings of the National Academy of Sciences of the United States of America, 87 (17). pp. 6718-6722. ISSN 00278424 (ISSN)

Book Section

Zador, A (April 2024) The Connectome as a DNA Sequencing Problem. In: The Future of the Brain: Essays by the World's Leading Neuroscientists. Princeton University Press, pp. 40-49.

Pearlmutter, B. A., Asari, H., Zador, A. M. (2005) Neuronal predictions of sparse linear representations. In: 4th European Congress on Acoustics. Hirzel, L147-L152.

Pearlmutter, B. A., Zador, A. M. (2004) Monaural source separation using spectral cues. In: Independent Component Analysis and Blind Signal Separation. Lecture Notes in Computer Science, 3195 . Springer-Verlag Berlin, Berlin, pp. 478-485. ISBN 0302-9743

Conference or Workshop Item

Bhattasali, NX, Zador, AM, Engel, TA (January 2022) Neural Circuit Architectural Priors for Embodied Control. In: UNSPECIFIED.

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (2022) High-throughput sequencing of olfactory single neuron projections reveals non-random spatial organization. In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Chen, Yushu, Chen, Xiaoyin, Kebschull, Justus M, Koulakov, Alexei, Zador, Anthony M, Albeanu, Dinu F (September 2019) The logic of olfactory bulb outputs revealed by high-throughput single-neuron projection mapping using sequencing. In: UNSPECIFIED.

Davidsson, M., Sellnow, R. C., Yonkers, R., Zador, A. M., Manfredsson, F. P. (April 2019) Using MAPseq to Assess Serotonergic Hyperinnervation in Non-Motor Circuits in the Parkinsonian Rat. In: 22nd Annual Meeting of the American-Society-of-Gene-and-Cell-Therapy (ASGCT).

Zador, A. M., Pearlmutter, B. A. (1996) VC dimension of an integrate-and-fire neuron model. In: Proceedings of the 9th Annual Conference on Computational Learning Theory.

Brown, T. H., Mainen, Z. F., Zador, A. M., Claiborne, B. J. (1990) Self-organization of Hebbian synapses in Hippocampal neurons. In: Proceedings of the 1990 conference on Advances in neural information processing systems 3, Denver, Colorado, United States.

Book

DeWeese, M. R., Zador, A. M. (2003) Binary coding in auditory cortex. Neural Information Processing Systems Foundation.

Machens, C. K., Wehr, M., Zador, A. M. (2002) Spectro-temporal receptive fields of subthreshold responses in auditory cortex. Neural Information Processing Systems Foundation.

Natschläger, T., Maass, W., Sontag, E. D., Zador, A. (2000) Processing of time series by neural circuits with biologically realistic synaptic dynamics. Neural Information Processing Systems Foundation.

Brown, T. H., Claiborne, B. J., Zador, A. M. (1991) Nonlinear Pattern Separation in Single Hippocampal Neurons with Active Dendritic Membrane. Neural Information Processing Systems Foundation.

Video

Zador, A. M. (November 2012) Talk from Tony Zador at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Other

Zador, Anthony M (February 2023) Charles F. Stevens (1934-2022). Springer Science and Business Media LLC.