Items where Subject is "neurobiology"

Paper

Acerbi, L, Aguillon-Rodriguez, V, Ahmadi, M, Amjad, J, Angelaki, D, Arlandis, J, Ashwood, ZC, Banga, K, Barrell, H, Bayer, HM, Benson, J, Benson, B, Bhagat, J, Birman, D, Bougrova, K, Boussard, J, Bruijns, SA, Carandini, M, Catarino, J, Cazettes, F, Dan, Y, Davatolagh, F, Dayan, P, Denève, S, Dong, LL, Engel, T, Fabbri, M, Fiete, I, Findling, C, Freitas-Silva, L, Ganguli, S, Gercek, B, Ghani, N, Gordeliy, I, Haetzel, LM, Hausser, M, Hiratani, N, Hofer, S, Hu, F, Huber, F, Hurwitz, C, Khanal, A, Krasniak, CS, Krishnagopal, S, Krumin, M, Langdon, C, Latham, P, Lau, P, Lee, H, Liu, A, Mainen, ZF, Vergara, HM, Mcgrory, C, McMannon, B, Meijer, GT, Melin, M, Meshulam, L, Miska, NJ, Mitelut, C, Mohammadi, Z, Mrsic-Flogel, T, Murakami, M, Noel, JP, Nylund, K, Vazquez, AP, Paninski, L, Pezzotta, A, Picard, S, Pillow, JW, Pouget, A, Roth, N, Roy, NA, Saniee, K, Schaeffer, R, Shi, Y, Socha, KZ, Soitu, C, Svoboda, K, Taheri, M, Tessereau, C, Urai, AE, Varol, E, Wells, MJ, Whiteway, MR, Windolf, C, Witten, I, Wool, LE, Zador, AM, Bonacchi, N, Chapuis, GA, Churchland, AK, DeWitt, EEJ, Faulkner, M, Harris, KD, Huntenburg, JM, Hunter, M, Laranjeira, IC, Rossant, C, Sasaki, M, Schartner, MM (January 2023) A modular architecture for organizing, processing and sharing neurophysiology data. Nature Methods, 20 (3). pp. 403-407. ISSN 1548-7091 (Public Dataset)

Amit, Moran, Anastasaki, Corina, Dantzer, Robert, Demir, Ihsan Ekin, Deneen, Benjamin, Dixon, Karen O, Egeblad, Mikala, Gibson, Erin M, Hervey-Jumper, Shawn L, Hondermarck, Hubert, Magnon, Claire, Monje, Michelle, Na'ara, Shorook, Pan, Yuan, Repasky, Elizabeth A, Scheff, Nicole N, Sloan, Erica K, Talbot, Sebastien, Tracey, Kevin J, Trotman, Lloyd C, Valiente, Manuel, Van Aelst, Linda, Venkataramani, Varun, Venkatesh, Humsa S, Vermeer, Paola D, Winkler, Frank, Wong, Richard J, Gutmann, David H, Borniger, Jeremy C (April 2024) Next Directions in the Neuroscience of Cancers Arising outside the CNS. Cancer Discovery, 14 (4). pp. 669-673. ISSN 2159-8274

Anaparthy, N., Ho, Y. J., Martelotto, L., Hammell, M., Hicks, J. (January 2019) Single-Cell Applications of Next-Generation Sequencing. Cold Spring Harb Perspect Med, 9 (10). ISSN 2157-1422

Aron, A.R., Ivry, R.B., Jeffery, K.J., Poldrack, R.A., Schmidt, R.A., Summerfield, C., Urai, A. E. (April 2020) How Can Neuroscientists Respond to the Climate Emergency? Neuron, 106 (1). pp. 17-20. ISSN 0896-6273

Banerjee, Arkarup, Isko, Emily, Harpole, Clifford, Zheng, Xiaoyue, Zhan, Huiqing, Davis, Martin, Zador, Anthony (September 2024) Selective expansion of motor cortical projections in the evolution of vocal novelty. bioRxiv. ISSN 2692-8205 (Submitted)

Banerjee, Arkarup, Egger, Robert, Long, Michael A (June 2021) Using focal cooling to link neural dynamics and behavior. Neuron. ISSN 0896-6273

Barabási, Dániel L, Bianconi, Ginestra, Bullmore, Ed, Burgess, Mark, Chung, SueYeon, Eliassi-Rad, Tina, George, Dileep, Kovács, István A, Makse, Hernán, Nichols, Thomas E, Papadimitriou, Christos, Sporns, Olaf, Stachenfeld, Kim, Toroczkai, Zoltán, Towlson, Emma K, Zador, Anthony M, Zeng, Hongkui, Barabási, Albert-László, Bernard, Amy, Buzsáki, György (August 2023) Neuroscience Needs Network Science. The Journal of Neuroscience, 43 (34). pp. 5989-5995. ISSN 0270-6474

Bartley, A. F., Huang, Z. J., Huber, K. M., Gibson, J. R. (October 2008) Differential Activity-Dependent, Homeostatic Plasticity of Two Neocortical Inhibitory Circuits. J Neurophysiol, 100 (4). pp. 1983-1994.

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (April 2023) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. bioRxiv. ISSN 2692-8205 (Submitted)

Bokil, H., Pesaran, B., Andersen, R. A., Mitra, P. P. (2005) A framework for detection and classification of events in neural activity. arXiv.

Bokil, H. S., Mitra, P. P. (2007) Non-parametric methods for the analysis of neurobiological time-series data. 46th IEEE Conference on Decision and Control, 2007. pp. 5833-5838.

Borniger, Jeremy C (October 2024) Cancer neuroscience at the brain-body interface. Genes & Development. ISSN 0890-9369

Borniger, Jeremy C (September 2021) Cancer as a tool for preclinical psychoneuroimmunology. Brain, Behavior, & Immunity - Health. p. 100351. ISSN 2666-3546

Chen, Xiaoyin, Fischer, Stephan, Rue, Mara CP, Zhang, Aixin, Mukherjee, Didhiti, Kanold, Patrick O, Gillis, Jesse, Zador, Anthony M (April 2024) Whole-cortex in situ sequencing reveals input-dependent area identity. Nature. ISSN 0028-0836

Churchland, A. (December 2016) Q&A with Anne Churchland. Neuron, 92 (5). pp. 940-942. ISSN 0896-6273

Churchland, A. K., Abbott, L. F. (February 2016) Conceptual and technical advances define a key moment for theoretical neuroscience. Nat Neurosci, 19 (3). pp. 348-9. ISSN 1546-1726 (Electronic)1097-6256 (Linking)

Cline, H. T., Wu, G.-Y., Malinow, R. (1996) In vivo development of neuronal structure and function. Cold Spring Harbor Symposia on Quantitative Biology, 61. pp. 95-104. ISSN 00917451 (ISSN)

Cohen, Yarden, Engel, Tatiana A, Langdon, Christopher, Lindsay, Grace W, Ott, Torben, Peters, Megan AK, Shine, James M, Breton-Provencher, Vincent, Ramaswamy, Srikanth (November 2022) Recent Advances at the Interface of Neuroscience and Artificial Neural Networks. The Journal of Neuroscience, 42 (45). pp. 8514-8523. ISSN 1529-2401

Crow, M., Gillis, J. (June 2019) Single cell RNA-sequencing: replicability of cell types. Current Opinion in Neurobiology, 56. pp. 69-77. ISSN 09594388 (ISSN)

Dalla, Christina, Jaric, Ivana, Pavlidi, Pavlina, Hodes, Georgia E, Kokras, Nikolaos, Bespalov, Anton, Kas, Martien J, Steckler, Thomas, Kabbaj, Mohamed, Würbel, Hanno, Marroco, Jordan, Tollkuhn, Jessica, Shansky, Rebecca, Bangasser, Debra, Becker, Jill B, McCarthy, Margaret, Ferland-Beckham, Chantelle (October 2023) Practical solutions for including Sex As a Biological Variable (SABV) in preclinical neuropsychopharmacological research. Journal of Neuroscience Methods. p. 110003. ISSN 0165-0270

Defelipe, Javier, Douglas, Rodney, Hill, Sean L, Lein, Edward S, Martin, Kevan, Rockland, Kathleen S, Segev, Idan, Shepherd, Gordon M, Tamás, Gábor (June 2016) Comments and general discussion on “The anatomical problem posed by brain complexity and size: a potential solution”. Frontiers in Neuroanatomy, 10. ISSN 1662-5129

Devor, Anna, Bandettini, Peter A, Boas, David A, Bower, James M, Buxton, Richard B, Cohen, Lawrence B, Dale, Anders M, Einevoll, Gaute T, Fox, Peter T, Franceschini, Maria Angela, Friston, Karl J, Fujimoto, James G, Geyer, Mark A, Greenberg, Joel H, Halgren, Eric, Hämäläinen, Matti S, Helmchen, Fritjof, Hyman, Bradley T, Jasanoff, Alan, Jernigan, Terry L, Judd, Lewis L, Kim, Seong-Gi, Kleinfeld, David, Kopell, Nancy J, Kutas, Marta, Kwong, Kenneth K, Larkum, Matthew E, Lo, Eng H, Magistretti, Pierre J, Mandeville, Joseph B, Masliah, Eliezer, Mitra, Partha P, Mobley, William C, Moskowitz, Michael A, Nimmerjahn, Axel, Reynolds, John H, Rosen, Bruce R, Salzberg, Brian M, Schaffer, Chris B, Silva, Gabriel A, So, Peter T C., Spitzer, Nicholas C, Tootell, Roger B, Van Essen, David C, Vanduffel, Wim, Vinogradov, Sergei A, Wald, Lawrence L, Wang, Lihong V, Weber, Bruno, Yodh, Arjun G (October 2013) The Challenge of Connecting the Dots in the B.R.A.I.N. Neuron, 80 (2). pp. 270-274. ISSN 0896-6273

Engel, Tatiana A, Schölvinck, Marieke L, Lewis, Christopher M (October 2021) The diversity and specificity of functional connectivity across spatial and temporal scales. NeuroImage, 245. p. 118692. ISSN 1053-8119

Enikolopov, G. (June 2006) NO and neural stem cells. Nitric Oxide-Biology and Chemistry, 14 (4). A6-A7. ISSN 1089-8603

Fee, M. S., Mitra, P. P., Kleinfeld, D. (1997) Central versus peripheral determinants of patterned spike activity in rat vibrissa cortex during whisking. Journal of Neurophysiology, 78 (2). pp. 1144-1149. ISSN 00223077 (ISSN)

Ferro, Austin, Arshad, Anosha, Boyd, Leah, Stanley, Tess, Berisha, Adrian, Vrudhula, Uma, Gomez, Adrian M, Borniger, Jeremy C, Cheadle, Lucas M (April 2024) The cytokine receptor Fn14 is a molecular brake on neuronal activity that mediates circadian function in vivo. bioRxiv. (Submitted)

Ferro, Austin, Auguste, Yohan SS, Cheadle, Lucas (2021) Microglia, Cytokines, and Neural Activity: Unexpected Interactions in Brain Development and Function. Frontiers in Immunology, 12. p. 703527. ISSN 1664-3224

Frenguelli, Bruno G., Malinow, Roberto (September 1996) Fluctuations in intracellular calcium responses to action potentials in single en passage presynaptic boutons of layer V neurons in neocortical slices. Learning and Memory, 3 (2-3). pp. 150-9. ISSN 1072-0502 (Print)

Gao, X., Enikolopov, G. N., Chen, J. (October 2009) Moderate traumatic brain injury promotes proliferation of quiescent neural progenitors in the adult hippocampus. Experimental Neurology, 219 (2). pp. 516-523.

Gentet, L. J., Kremer, Y., Taniguchi, H., Huang, Z. J., Staiger, J. F., Petersen, C. C. H. (February 2012) Unique functional properties of somatostatin-expressing GABAergic neurons in mouse barrel cortex. Nature Neuroscience, 15 (4). pp. 607-12. ISSN 10976256 (ISSN)

Gianfranceschi, L., Siciliano, R., Walls, J., Morales, B., Kirkwood, A., Huang, Z. J., Tonegawa, S., Maffei, L. (October 2003) Visual cortex is rescued from the effects of dark rearing by overexpression of BDNF. Proceedings of the National Academy of Sciences of the United States of America, 100 (21). pp. 12486-12491. ISSN 0027-8424

Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P. (2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. Quantitative Biology, 1 (1). pp. 91-100. ISSN 2095-4689

Grange, P., Bohland, J. W., Okaty, B. W., Sugino, K., Bokil, H., Nelson, S. B., Ng, L., Hawrylycz, M., Mitra, P. P. (April 2014) Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5397-5402. ISSN 0027-8424

Hanover, J. L., Huang, Z. J., Tonegawa, S., Stryker, M. P. (1999) Brain-derived neurotrophic factor overexpression induces precocious critical period in mouse visual cortex. Journal of Neuroscience, 19 (22). ISSN 0270-6474

Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W Jim, Zingg, Brian (June 2023) A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology, 21 (6). e3002133. ISSN 1544-9173

Henn, F. (1982) Neurotransmitters and astroglia lead to neuromodulation. Progress in Brain Research, 55. pp. 241-52. ISSN 0079-6123 (Print)0079-6123

Henn, F. A. (1995) [Neurobiology of schizophrenia]. Schweizer Archiv fur Neurologie und Psychiatrie, 146 (5). pp. 224-9. ISSN 0258-7661 (Print)0258-7661

Henn, F. A., Braus, D. F. (1999) Structural neuroimaging in schizophrenia. An integrative view of neuromorphology. European Archives of Psychiatry and Clinical Neuroscience, 249 Su. pp. 48-56. ISSN 0940-1334 (Print)0940-1334 (Linking)

Henn, F. A., Johnson, J., Edwards, E., Anderson, D. (1985) Melancholia in rodents: neurobiology and pharmacology. Psychopharmacol Bulletin, 21 (3). pp. 443-6. ISSN 0048-5764 (Print)0048-5764

Hermansen, Erik, Klindt, David A, Dunn, Benjamin A (November 2022) Uncovering 2-D toroidal representations in grid cell ensemble activity during 1-D behavior. bioRxiv. (Submitted)

Higashiyama, H., Hirose, F., Yamaguchi, M., Inoue, Y. H., Fujikake, N., Matsukage, A., Kakizuka, A. (March 2002) Identification of ter94, Drosophila VCP, as a modulator of polyglutamine-induced neurodegeneration. Cell Death and Differentiation, 9 (3). pp. 264-273. ISSN 1350-9047

Homsy, J., Zaidi, S., Shen, Y., Ware, J. S., Samocha, K. E., Karczewski, K. J., DePalma, S. R., McKean, D., Wakimoto, H., Gorham, J., Jin, S. C., Deanfield, J., Giardini, A., Porter G.A, Jr., Kim, R., Bilguvar, K., López-Giráldez, F., Tikhonova, I., Mane, S., Romano-Adesman, A., Qi, H., Vardarajan, B., Ma, L., Daly, M., Roberts, A. E., Russell, M. W., Mital, S., Newburger, J. W., Gaynor, J. W., Breitbart, R. E., Iossifov, I., Ronemus, M., Sanders, S. J., Kaltman, J. R., Seidman, J. G., Brueckner, M., Gelb, B. D., Goldmuntz, E., Lifton, R. P., Seidman, C. E., Chung, W. K. (December 2015) De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies. Science, 350 (6265). pp. 1262-1266. ISSN 00368075

Huang, Z. J. (May 2009) Activity-dependent development of inhibitory synapses and innervation pattern: role of GABA signalling and beyond. Journal of Physiology-London, 587 (9). pp. 1881-1888. ISSN 0022-3751

Huang, Z. J., Satterlie, R. A. (1990) Neuronal mechanisms underlying behavioral switching in a pteropod mollusc. Journal of Comparative Physiology - A Sensory, Neural, and Behavioral Physiology, 166 (6). pp. 875-887. ISSN 03407594 (ISSN)

Huilgol, D., Tole, S. (July 2016) Cell migration in the developing rodent olfactory system. Cell Mol Life Sci, 73 (13). pp. 2467-2490. ISSN 1420-9071 (Electronic)1420-682X (Linking)

Hwang, William L, Perrault, Ella N, Birbrair, Alexander, Mattson, Brandi J, Gutmann, David H, Mabbott, Donald J, Cukierman, Edna, Repasky, Elizabeth A, Sloan, Erica K, Zong, Hui, Demir, Ihsan Ekin, Saloman, Jami L, Borniger, Jeremy C, Hu, Jian, Dietrich, Jorg, Breunig, Joshua J, Çifcibaşı, Kaan, Ahmad Kasm, Khalil Ali, Valiente, Manuel, Wintermark, Max, Acharya, Munjal M, Scheff, Nicole N, D'Silva, Nisha J, Vermeer, Paola D, Wong, Richard J, Talbot, Sebastien, Hervey-Jumper, Shawn L, Wang, Timothy C, Ye, Yi, Pan, Yuan, Bunimovich, Yuri L, Amit, Moran (October 2024) Integrating priorities at the intersection of cancer and neuroscience. Cancer Cell. S1535-6108(24)00362. ISSN 1535-6108

International Brain Laboratory, Aguillon-Rodriguez, Valeria, Angelaki, Dora, Bayer, Hannah, Bonacchi, Niccolo, Carandini, Matteo, Cazettes, Fanny, Chapuis, Gaelle, Churchland, Anne K, Dan, Yang, Dewitt, Eric, Faulkner, Mayo, Forrest, Hamish, Haetzel, Laura, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Khanal, Anup, Krasniak, Christopher, Laranjeira, Ines, Mainen, Zachary F, Meijer, Guido, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Murakami, Masayoshi, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Rossant, Cyrille, Sanders, Joshua, Socha, Karolina, Terry, Rebecca, Urai, Anne E, Vergara, Hernando, Wells, Miles, Wilson, Christian J, Witten, Ilana B, Wool, Lauren E, Zador, Anthony M (May 2021) Standardized and reproducible measurement of decision-making in mice. eLife, 10. ISSN 2050-084X

Jarczok, M. N., Aguilar-Raab, C., Koenig, J., Kaess, M., Borniger, J. C., Nelson, R. J., Hall, M., Ditzen, B., Thayer, J. F., Fischer, J. E. (July 2018) The Heart's rhythm 'n' blues: Sex differences in circadian variation patterns of vagal activity vary by depressive symptoms in predominantly healthy employees. Chronobiol Int, 35 (7). pp. 896-909. ISSN 1525-6073 (Electronic)0742-0528 (Linking)

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice. Elife, 8. ISSN 2050-084x (Public Dataset)

Karakaya, Eda, Oleinik, Natalia, Edwards, Jazlyn, Tomberlin, Jensen, Barker, Randy Bent, Berber, Burak, Ericsson, Maria, Alsudani, Habeeb, Ergul, Adviye, Beyaz, Semir, Lemasters, John J, Ogretmen, Besim, Albayram, Onder (February 2024) p17/C18-ceramide-mediated mitophagy is an endogenous neuroprotective response in preclinical and clinical brain injury. PNAS Nexus, 3 (2). ISSN 2752-6542

Kepecs, A. (May 2011) Neuroscience: My brain made me do it. Nature, 473 (7347). pp. 280-281. ISSN 0028-0836

Kim, Y. S., Choi, E. K., Yang, H. M., Kim, J., Yu, I. J., Marshak, D. R., Carp, R. I., Wisniewski, H. M. (1994) Increased Expression of S100-Beta in Brain of Im Mice Injected with 87v Scrapie Strain. Neurobiology of Aging, 15. S89-S89. ISSN 0197-4580

Kinney, Brian, Sahu, Shubham, Stec, Natalia, Hills-Muckey, Kelly, Adams, Dexter W, Wang, Jing, Jaremko, Matt, Joshua-Tor, Leemor, Keil, Wolfgang, Hammell, Christopher M (August 2023) A circadian-like gene network programs the timing and dosage of heterochronic miRNA transcription during C. elegans development. Developmental Cell. S1534-5807(23)00402. ISSN 1534-5807

Klindt, David (December 2022) Controlling neural network smoothness for neural algorithmic reasoning. Transactions on Machine Learning Research.

Klindt, David (October 2022) Understanding neural coding on latent manifolds by sharing features and dividing ensembles. arXiv. (Submitted)

Kopec, C. D., Bowers, A. C., Pai, S. , Brody, C. D. (March 2011) Semi-automated atlas-based analysis of brain histological sections. Journal of Neuroscience Methods, 196 (1). ISSN 0165-0270

Kumarasami, Ramdayalan, Verma, Richa, Pandurangan, Karthika, Ramesh, Jivitha Jyothi, Pandidurai, Sathish, Savoia, Stephen, Jayakumar, Jaikishan, Bota, Mihail, Mitra, Partha, Joseph, Jayaraj, Sivaprakasam, Mohanasankar (2023) A technology platform for standardized cryoprotection and freezing of large-volume brain tissues for high-resolution histology. Frontiers in Neuroanatomy, 17. p. 1292655. ISSN 1662-5129

La Manno, Gioele, Siletti, Kimberly, Furlan, Alessandro, Gyllborg, Daniel, Vinsland, Elin, Mossi Albiach, Alejandro, Mattsson Langseth, Christoffer, Khven, Irina, Lederer, Alex R, Dratva, Lisa M, Johnsson, Anna, Nilsson, Mats, Lönnerberg, Peter, Linnarsson, Sten (July 2021) Molecular architecture of the developing mouse brain. Nature. ISSN 0028-0836

Langdon, Christopher, Engel, Tatiana (2022) Latent circuit inference from heterogeneous neural responses during cognitive tasks. bioRxiv. (Submitted)

Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Flowers, Katelyn, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (December 2023) The molecular cytoarchitecture of the adult mouse brain. Nature, 624 (7991). pp. 333-342. ISSN 0028-0836

Lazarus, M. S., Huang, Z. J. (August 2011) Distinct maturation profiles of perisomatic and dendritic targeting GABAergic interneurons in the mouse primary visual cortex during the critical period of ocular dominance plasticity. Journal of Neurophysiology, 106 (2). pp. 775-787. ISSN 0022-3077

Liu, H. C., Enikolopov, G., Chen, Y. Z. (September 2012) Cul4B regulates neural progenitor cell growth. BMC Neuroscience, 13. p. 13. ISSN 1471-2202

Luo, Pei X, Zakharenkov, Hannah Cortez, Torres, Lisette Y, Rios, Roberto A, Gegenhuber, Bruno, Black, Alexis M, Xu, Christine K, Minie, Vanessa A, Tran, Amy M, Tollkuhn, Jessica, Trainor, Brian C (May 2022) Oxytocin receptor behavioral effects and cell types in the bed nucleus of the stria terminalis. Hormones and Behaviour, 143. p. 105203. ISSN 0018-506X

Macpherson, Tom, Churchland, Anne, Sejnowski, Terry, DiCarlo, James, Kamitani, Yukiyasu, Takahashi, Hidehiko, Hikida, Takatoshi (September 2021) Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research. Neural Networks. ISSN 0893-6080

Marshak, D. R. (1990) S100 beta as a neurotrophic factor. Prog Brain Res, 86. pp. 169-81. ISSN 0079-6123 (Print)0079-6123 (Linking)

Masse, N. Y., Turner, G. C., Jefferis, G. S. X. E. (August 2009) Olfactory Information Processing in Drosophila. Current Biology, 19 (16). R700-R713. ISSN 0960-9822

Metzler, M., Li, B., Gan, L., Georgiou, J., Gutekunst, C. A., Wang, Y., Torre, E., Devon, R. S., Oh, R., Legendre-Guillemin, V., Rich, M., Alvarez, C., Gertsenstein, M., McPherson, P. S., Nagy, A., Wang, Y. T., Roder, J. C., Raymond, L. A., Hayden, M. R. (July 2003) Disruption of the endocytic protein HIP1 results in neurological deficits and decreased AMPA receptor trafficking. Embo Journal, 22 (13). pp. 3254-66. ISSN 0261-4189 (Print)0261-4189

Miller, C. T., Hale, M. E., Okano, H., Okabe, S., Mitra, P. (February 2019) Comparative Principles for Next-Generation Neuroscience. Frontiers in Behavioral Neuroscience, 13. ISSN 1662-5153

Mitchell, K. J., Huang, Z. J., Moghaddam, B., Sawa, A. (November 2011) Following the genes: A framework for animal modeling of psychiatric disorders. BMC Biology, 9 (11). Article 76. ISSN 17417007

Mitra, Partha, Mezias, Chris, Huo, Bingxing, Bota, Mihail, Jayakumar, Jaikishan (May 2024) Establishing neuroanatomical correspondences across mouse and marmoset brain structures. Research Square. (Submitted)

Monje, M., Borniger, J., D'Silva, N.J., Deneen, B., Dirks, P.B., Fattahi, F., Frenette, P.S., Garzia, L., Gutmann, D.H., Hanahan, D., Hervey-Jumper, S.L., Hondermarck, H., Hurov, J.B., Kepecs, A., Knox, S.M., Lloyd, A.C., Magnon, C., Saloman, J.L., Segal, R.A., Sloan, E.K., Sun, X., Taylor, M.D., Tracey, K.J., Trotman, L. C., Tuveson, D. A., Wang, T.C., White, R.A., Winkler, F. (April 2020) Roadmap for the Emerging Field of Cancer Neuroscience. Cell, 181 (2). pp. 219-222. ISSN 0092-8674

Nowlan, Alexandra C, Kelahan, Clancy, Shea, Stephen D (February 2022) Multisensory integration of social signals by a pathway from the basal amygdala to the auditory cortex in maternal mice. bioRxiv. (Unpublished)

Odoemene, O., Pisupati, S., Nguyen, H., Churchland, A. K. (October 2018) Visual evidence accumulation guides decision-making in unrestrained mice. J Neurosci, 38 (47). pp. 10143-10155. ISSN 0270-6474 (Public Dataset)

Pisano, Thomas J, Dhanerawala, Zahra M, Kislin, Mikhail, Bakshinskaya, Dariya, Engel, Esteban A, Hansen, Ethan J, Hoag, Austin T, Lee, Junuk, de Oude, Nina L, Venkataraju, Kannan Umadevi, Verpeut, Jessica L, Hoebeek, Freek E, Richardson, Ben D, Boele, Henk-Jan, Wang, Samuel S-H (September 2021) Homologous organization of cerebellar pathways to sensory, motor, and associative forebrain. Cell reports, 36 (12). p. 109721. ISSN 2211-1247

Preiser, Samuel A., Davenport, Charles Benedict (September 1918) Neurofibromatosis. The American Journal of the Medical Sciences , 4 (156). p. 507.

Ranade, S., Pi, H.J., Kepecs, A. (September 2014) Neuroscience: Waiting for Serotonin. Current Biology, 24 (17). R803-R805. ISSN 0960-9822

Redish, A David, Kepecs, Adam, Anderson, Lisa M, Calvin, Olivia L, Grissom, Nicola M, Haynos, Ann F, Heilbronner, Sarah R, Herman, Alexander B, Jacob, Suma, Ma, Sisi, Vilares, Iris, Vinogradov, Sophia, Walters, Cody J, Widge, Alik S, Zick, Jennifer L, Zilverstand, Anna (February 2022) Computational validity: using computation to translate behaviours across species. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1844). p. 20200525. ISSN 0962-8436

Richards, Blake, Tsao, Doris, Zador, Anthony (July 2022) The application of artificial intelligence to biology and neuroscience. Cell, 185 (15). pp. 2640-2643. ISSN 0092-8674

Riddle, Oscar (December 1928) Can we control sex? Science and Invention Magazine.

Sharma, Ashika, Jayakumar, Jaikishan, Mitra, Partha P, Chakraborti, Sutanu, Kumar, P Sreenivasa (June 2021) Application of Supervised Machine Learning to Extract Brain Connectivity Information from Neuroscience Research Articles. Interdisciplinary Sciences: Computational Life Sciences. ISSN 1913-2751

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Sierra, A., Encinas, J. M., Deudero, J. J. P., Chancey, J. H., Enikolopov, G., Overstreet-Wadiche, L. S., Tsirka, S. E., Maletic-Savatic, M. (October 2011) Microglial phagocytosis shapes adult hippocampal neurogenesis. Glia, 59. S17-S17. ISSN 0894-1491

Silva, Talita M, Borniger, Jeremy C, Alves, Michele Joana, Alzate Correa, Diego, Zhao, Jing, Fadda, Paolo, Toland, Amanda Ewart, Takakura, Ana C, Moreira, Thiago S, Czeisler, Catherine M, Otero, José Javier (April 2021) Machine learning approaches reveal subtle differences in breathing and sleep fragmentation in Phox2b-derived astrocytes ablated mice. Journal of Neurophysiology, 125 (4). pp. 1164-1179. ISSN 0022-3077

Smiley, Kristina O, Munley, Kathleen M, Aghi, Krisha, Lipshutz, Sara E, Patton, Tessa M, Pradhan, Devaleena S, Solomon-Lane, Tessa K, Sun, Simón ED (November 2023) Sex diversity in the 21st century: Concepts, frameworks, and approaches for the future of neuroendocrinology. Hormones and Behaviour, 157. p. 105445. ISSN 0018-506X

Striedter, G. F., Belgard, T. G., Chen, C. C., Davis, F. P., Finlay, B. L., Gunturkun, O., Hale, M. E., Harris, J. A., Hecht, E. E., Hof, P. R., Hofmann, H. A., Holland, L. Z., Iwaniuk, A. N., Jarvis, E. D., Karten, H. J., Katz, P. S., Kristan, W. B., Macagno, E. R., Mitra, P. P., Moroz, L. L., Preuss, T. M., Ragsdale, C. W., Sherwood, C. C., Stevens, C. F., Stuttgen, M. C., Tsumoto, T., Wilczynski, W. (2014) NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species. Brain, Behavior and Evolution, 83 (1). pp. 1-8. ISSN 00068977 (ISSN)

Sun, Yu-Chi, Chen, Xiaoyin, Fischer, Stephan, Lu, Shaina, Gillis, Jesse, Zador, Anthony (August 2020) Integrating barcoded neuroanatomy with spatial transcriptional profiling reveals cadherin correlates of projections shared across the cortex. bioRxiv. (Unpublished)

Tan, Z., Hu, H., Huang, Z. J., Agmon, A. (February 2008) Robust but delayed thalamocortical activation of dendritic-targeting inhibitory interneurons. Proc Natl Acad Sci U S A, 105 (6). pp. 2187-2192.

Taniguchi, H., He, M., Wu, P., Kim, S., Paik, R., Sugino, K., Kvitsani, D., Fu, Y., Lu, J., Lin, Y., Miyoshi, G., Shima, Y., Fishell, G., Nelson, S. B., Huang, Z.  J. (September 2011) A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex. Neuron, 71 (6). pp. 995-1013. ISSN 0896-6273

Tollkuhn, Jessica (May 2024) Parental-care puzzle in mice solved by thinking outside the brain. Nature. ISSN 0028-0836

Walker, W. H., Borniger, J. C., Gaudier-Diaz, M. M., Hecmarie Melendez-Fernandez, O., Pascoe, J. L., Courtney DeVries, A., Nelson, R. J. (May 2019) Acute exposure to low-level light at night is sufficient to induce neurological changes and depressive-like behavior. Mol Psychiatry. ISSN 1476-5578

Wu, X., Fu, Y., Knott, G., Lu, J., Di Cristo, G., Huang, Z. J. (January 2012) GABA Signaling Promotes Synapse Elimination and Axon Pruning in Developing Cortical Inhibitory Interneurons. Journal of Neuroscience, 32 (1). pp. 331-43. ISSN 0270-6474

Xavier, Andre M, Lin, Qianyu, Kang, Chris J, Cheadle, Lucas (June 2024) A single-cell transcriptomic atlas of sensory-dependent gene expression in developing mouse visual cortex. bioRxiv. ISSN 2692-8205 (Public Dataset)

Xia, Ruobing, Chen, Xiaomo, Engel, Tatiana A, Moore, Tirin (February 2024) Common and distinct neural mechanisms of attention. Trends in Cognitive Sciences. ISSN 1364-6613

Yang, Huan, Zeng, Qiong, Silverman, Harold A, Gunasekaran, Manojkumar, George, Sam J, Devarajan, Alex, Addorisio, Meghan E, Li, Jianhua, Tsaava, Téa, Shah, Vivek, Billiar, Timothy R, Wang, Haichao, Brines, Michael, Andersson, Ulf, Pavlov, Valentin A, Chang, Eric H, Chavan, Sangeeta S, Tracey, Kevin J (August 2021) HMGB1 released from nociceptors mediates inflammation. Proceedings of the National Academy of Sciences of USA, 118 (33). e2102034118-e2102034118. ISSN 0027-8424

Yin, W., Borniger, J. C., Wang, X., Maguire, S. M., Munselle, M. L., Bezner, K. S., Tesfamariam, H. M., Garcia, A. N., Hofmann, H. A., Nelson, R. J., Gore, A. C. (November 2019) Estradiol treatment improves biological rhythms in a preclinical rat model of menopause. Neurobiol Aging, 83. pp. 1-10. ISSN 1558-1497

Zador, Anthony (February 2024) The origins of COSYNE: Building a community. The Transmitter. ISSN 2770-0976

Zador, Anthony, Escola, Sean, Richards, Blake, Ölveczky, Bence, Bengio, Yoshua, Boahen, Kwabena, Botvinick, Matthew, Chklovskii, Dmitri, Churchland, Anne, Clopath, Claudia, DiCarlo, James, Ganguli, Surya, Hawkins, Jeff, Körding, Konrad, Koulakov, Alexei, LeCun, Yann, Lillicrap, Timothy, Marblestone, Adam, Olshausen, Bruno, Pouget, Alexandre, Savin, Cristina, Sejnowski, Terrence, Simoncelli, Eero, Solla, Sara, Sussillo, David, Tolias, Andreas S, Tsao, Doris (March 2023) Catalyzing next-generation Artificial Intelligence through NeuroAI. Nature Communications, 14 (1). p. 1597. ISSN 2041-1723

Zeisel, A., Hochgerner, H., Lönnerberg, P., Johnsson, A., Memic, F., van der Zwan, J., Häring, M., Braun, E., Borm, L. E., La Manno, G., Codeluppi, S., Furlan, A., Lee, K., Skene, N., Harris, K. D., Hjerling-Leffler, J., Arenas, E., Ernfors, P., Marklund, U., Linnarsson, S. (August 2018) Molecular Architecture of the Mouse Nervous System. Cell. ISSN 00928674 (ISSN)

Zeraati, R, Buendía, V, Engel, TA, Levina, A (April 2024) Topology-dependent coalescence controls scaling exponents in finite networks. Physical Review Research, 6 (2). ISSN 2643-1564

Zhang, Anqi, Zador, Anthony M (July 2022) Diversity and task-dependence of task representations in V1 during freely-moving decisions. bioRxiv. (Submitted)

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

Book Section

Svoboda, K., Tank, D. W., Stepnoski, R. A. , Denk, W. (2000) Two-photon Imaging of Neuronal Function in the Neocortex In Vivo. In: Imaging neurons: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0-87969-542-0

Zador, A (April 2024) The Connectome as a DNA Sequencing Problem. In: The Future of the Brain: Essays by the World's Leading Neuroscientists. Princeton University Press, pp. 40-49.

Conference or Workshop Item

Gonschorek, Dominic, Hoefling, Larissa, Szatko, Klaudia P, Franke, Katrin, Schubert, Timm, Dunn, Benjamin A, Berens, Philipp, Klindt, David A, Euler, Thomas (2021) Removing Inter-Experimental Variability from Functional Data in Systems Neuroscience. In: Advances in Neural Information Processing Systems.

Klindt, David A, Ecker, Alexander S, Euler, Thomas, Bethge, Matthias (2017) Neural system identification for large populations separating "what" and "where". In: 31st Conference on Neural Information Processing Systems (NIPS 2017), Long Beach, CA.

Thesis

Corona, Alberto (March 2023) Sex-dependent neural activity underlying parenting behavior in mice. PhD thesis, Cold Spring Harbor Laboratory.

Gruntman, Eyal (July 2012) Integration Properties of Kenyon Cells in the Drosophila melanogaster Mushroom Bodies. PhD thesis, Cold Spring Harbor Laboratory.

Honegger, Kyle S. (March 2012) Neural coding in the Drosophila Mushroom Body. PhD thesis, Cold Spring Harbor Laboratory.

John, K.A. (March 2009) Characterization of the role of DOCK7 in neuronal development. PhD thesis, Cold Spring Harbor Laboratory.

Pagliaro, Alexa H (May 2023) A disrupted parvalbumin network state impairs maternal behavior in a mouse model of Rett Syndrome. PhD thesis, Cold Spring Harbor Laboratory.

Video

Dubnau, J. T. (November 2012) Talk from Josh Dubnau at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Dataset

Churchland, A. K., Musall, Simon, Kaufman, Matthew T., Juavinett, A. L., Gluf, S. (October 2019) Dataset from: Single-trial neural dynamics are dominated by richly varied movements. [Dataset]

Juavinett, A. L., Bekheet, G., Churchland, A. K. (August 2019) Chronically-implanted Neuropixels probes enable high yield recordings in freely moving mice: dataset. [Dataset]

Other

Wei, Yi, Koulakov, Alexei (March 2014) Supplementary information for “Long-term memory stabilized by noise-induced rehearsal”. Unpublished. (Unpublished)