Items where Subject is "bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > RNA splicing"

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Number of items at this level: 102.

A

Allemand, E., Myers, M. P., Garcia-Bernardo, J., Harel-Bellan, A., Krainer, A. R., Muchardt, C. (2016) A Broad Set of Chromatin Factors Influences Splicing. PLoS Genet, 12 (9). e1006318. ISSN 1553-7404 (Electronic)1553-7390 (Linking)

Anczukow, O., Krainer, A. R. (2016) Splicing-factor alterations in cancers. RNA, 22 (9). pp. 1285-301. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Andersen, L., Ballester, R., Marchuk, D., Saulino, A., Wigler, M. H., Collins, F. (1991) Alternative Splicing in the Proposed Catalytic Domain of the Type-1 Neurofibromatosis Gene. American Journal of Human Genetics, 49 (4). p. 21. ISSN 0002-9297

Ando, S., Sarlis, N. J., Krishnan, J., Feng, X., Refetoff, S., Zhang, M. Q., Oldfield, E. H., Yen, P. M. (2001) Aberrant alternative splicing of thyroid hormone receptor in a TSH-secreting pituitary tumor is a mechanism for hormone resistance. Molecular Endocrinology, 15 (9). pp. 1529-1538. ISSN 0888-8809

Andresen, B. S., Krainer, A. R. (2009) When the genetic code is not enough: How sequence variations can affect pre-mRNA splicing and cause (complex) disease. In: Genetics of Complex Human Diseases: A Laboratory Manual. Cold Spring Harbor Laboratory Press, pp. 165-182. ISBN 9780879698836

B

Bilodeau, P. S., Domsic, J. K., Mayeda, A., Krainer, A. R., Stoltzfus, C. M. (2001) RNA splicing at human immunodeficiency virus type 1 3 ' splice site A2 is regulated by binding of hnRNP A/B proteins to an exonic splicing silencer element. Journal of Virology, 75 (18). pp. 8487-8497. ISSN 0022-538X

Boudrez, A., Beullens, M., Groenen, P., Van Eynde, A., Vulsteke, V., Jagiello, I., Murray, M., Krainer, A. R., Stalmans, W., Bollen, M. (2000) NIPP1-mediated interaction of protein phosphatase-1 with CDC5L, a regulator of pre-mRNA splicing and mitotic entry. Journal of Biological Chemistry, 275 (33). pp. 25411-25417. ISSN 0021-9258

Broker, T. R., Chow, L. T. (1979) Alternative Rna Splicing Patterns and the Clustered Transcription and Splicing Signals of Human Adenovirus 2. In: Eucaryotic gene regulation. ICN-UCLA symposia on molecular and cellular biology, 14 (ED.). Academic Press, New York, pp. 611-636.

Burns, C. G., Ohi, R., Krainer, A. R., Gould, K. L. (1999) Evidence that Myb-related CDC5 proteins are required for pre-mRNA splicing. Proceedings of the National Academy of Sciences of the United States of America, 96 (24). pp. 13789-13794. ISSN 0027-8424

C

Caceres, J. F., Krainer, A. R. (1993) Functional analysis of pre-mRNA splicing factor SF2/ASF structural domains. EMBO Journal, 12 (12). pp. 4715-4726. ISSN 0261-4189

Caceres, J. F., Krainer, A. R. (1997) Mammalian pre-mRNA splicing factors. In: Eukaryotic mRNA processing. IRL Press at Oxford University Press. ISBN 9780199634187

Caceres, J. F., Screaton, G. R., Krainer, A. R. (1998) A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm. Genes & Development, 12 (1). pp. 55-66. ISSN 0890-9369

Caceres, J. F., Stamm, S., Helfman, D. M., Krainer, A. R. (1994) Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors. Science, 265 (5179). pp. 1706-9. ISSN 0036-8075 (Print)0036-8075

Chandler, S. D., Mayeda, A., Yeakley, J. M., Krainer, A. R., Fu, X. D. (1997) RNA splicing specificity determined by the coordinated action of RNA recognition motifs in SR proteins. Proceedings of the National Academy of Sciences of the United States of America, 94 (8). pp. 3596-3601. ISSN 0027-8424

Chang, An-Yun, Castel, Stephane E., Ernst, Evan, Kim, Hyun Soo, Martienssen, Robert A. (2017) The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Cell Reports, 19 (12). pp. 2477-2489. ISSN 2211-1247

Chen, C. D., Helfman, D. M. (1999) Donor site competition is involved in the regulation of alternative splicing of the rat beta-tropomyosin pre-mRNA. Rna, 5 (2). pp. 290-301. ISSN 1355-8382 (Print)

Chew, S. L., Liu, H. X., Mayeda, A., Krainer, A. R. (1999) Evidence for the function of an exonic splicing enhancer after the first catalytic step of pre-mRNA splicing. Proceedings of the National Academy of Sciences of the United States of America, 96 (19). pp. 10655-10660. ISSN 0027-8424

Chow, L. T., Broker, T. R., Lewis, J. B. (1979) Complex splicing patterns of RNAs from the early regions of adenovirus-2. J Mol Biol, 134 (2). pp. 265-303. ISSN 0022-2836 (Print)0022-2836 (Linking)

Chow, L. T., Kilpatrick, B. A., Lewis, J. B., Grodzicker, T., Sambrook, J., Gelinas, R. E., Broker, T. R. (1979) Splicing Patterns and Pathways of Adenoviral Rna Transcripts. Journal of Supramolecular Structure, 8 (SUPPL.). p. 45.

Chow, L. T., Lewis, J. B., Broker, T. R. (1980) RNA transcription and splicing at early and intermediate times after adenovirus-2 infection. Cold Spring Harb Symp Quant Biol, 44 (1). pp. 401-414.

Conway, G. C., Krainer, A. R., Spector, D. L., Roberts, R. J. (1989) Multiple splicing factors are released from endogenous complexes during in vitro pre-mRNA splicing. Molecular & Cellular Biology, 9 (12). pp. 5273-80. ISSN 0270-7306

D

Dance, G. S. C., Sowden, M. P., Cartegni, L., Cooper, E., Krainer, A. R., Smith, H. C. (2002) Two proteins essential for apolipoprotein B mRNA editing are expressed from a single gene through alternative splicing. Journal of Biological Chemistry, 277 (15). pp. 12703-12709. ISSN 0021-9258

E

Engström, P. G., Steijger, T., Sipos, B., Grant, G. R., Kahles, A., Rätsch, G., Goldman, N., Hubbard, T. J., Harrow, J., Guigó, R., Bertone, P., Alioto, T., Behr, J., Bohnert, R., Campagna, D., Davis, C. A., Dobin, A., Gingeras, T. R., Jean, G., Kosarev, P., Li, S., Liu, J., Mason, C. E., Molodtsov, V., Ning, Z., Ponstingl, H., Prins, J. F., Ribeca, P., Seledtsov, I., Solovyev, V., Valle, G., Vitulo, N., Wang, K., Wu, T. D., Zeller, G. (2013) Systematic evaluation of spliced alignment programs for RNA-seq data. Nature Methods, 10 (12). pp. 1185-1191. ISSN 15487091 (ISSN)

Eperon, I. C., Krainer, A. R. (1994) Splicing of mRNA precursors in mammalian cells. In: RNA Processing, a practical approach. IRL, Oxford, pp. 57-101. ISBN 9780199633432

F

Fu, X. D., Mayeda, A., Maniatis, T., Krainer, A. R. (1992) General splicing factors SF2 and SC35 have equivalent activities in vitro, and both affect alternative 5' and 3' splice site selection. Proceedings of the National Academy of Sciences of the United States of America, 89 (23). pp. 11224-8. ISSN 0027-8424 (Print)0027-8424

G

Grotewold, E., Athma, P., Peterson, T. (1991) Alternatively spliced products of the maize P gene encode proteins with homology to the DNA-binding domain of myb-like transcription factors. Proc Natl Acad Sci U S A, 88 (11). pp. 4587-91. ISSN 0027-8424 (Print)0027-8424 (Linking)

Guo, W., Helfman, D. M. (1991) Alternative Rna Splicing of Beta Tropomyosin Pre-Messenger Rna Identification of Exon and Intron Elements That Inhibit the Use of the Skeletal Muscle-Specific Exon in Nonmuscle Cells. Journal of Cellular Biochemistry, 47 (Suppl ). p. 73.

Guo, W., Mulligan, G. J., Wormsley, S., Helfman, D. M. (1991) Alternative splicing of beta-tropomyosin pre-mRNA: cis-acting elements and cellular factors that block the use of a skeletal muscle exon in nonmuscle cells. Genes Dev, 5 (11). pp. 2096-107. ISSN 0890-9369 (Print)0890-9369 (Linking)

H

Hanamura, A., Caceres, J. F., Mayeda, A., Franza, B. R., Krainer, A. R. (1998) Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. RNA, 4 (4). pp. 430-444. ISSN 1355-8382

Hannon, G. J., Maroney, P. A., Ayers, D. G., Shambaugh, J. D., Nilsen, T. W. (1990) Transcription of a nematode trans-spliced leader RNA require internal elements for both initiation and 3' end-formation. EMBO Journal, 9 (6). pp. 1915-1921. ISSN 02614189 (ISSN)

Hannon, G. J., Maroney, P. A., Denker, J. A., Nilsen, T. W. (1990) Trans splicing of nematode pre-messenger RNA in vitro. Cell, 61 (7). pp. 1247-1255. ISSN 00928674 (ISSN)

Hannon, G. J., Maroney, P. A., Nilsen, T. W. (1991) U small nuclear ribonucleoprotein requirements for nematode cis- and trans-splicing in vitro. Journal of Biological Chemistry, 266 (34). pp. 22792-22695. ISSN 00219258 (ISSN)

Hannon, G. J., Maroney, P. A., Yu, Y. T., Hannon, G. E., Nilsen, T. W. (1992) Interaction of U6 snRNA with a sequence required for function of the nematode SL RNA in trans-splicing. Science, 258 (5089). pp. 1775-1780. ISSN 00368075 (ISSN)

Hao, L. N., Tiganis, T., Tonks, N. K., Charbonneau, H. (1997) The noncatalytic C-terminal segment of the T cell protein tyrosine phosphatase regulates activity via an intramolecular mechanism. Journal of Biological Chemistry, 272 (46). pp. 29322-29329. ISSN 0021-9258

Hastings, M. L., Krainer, A. R. (2001) Functions of SR proteins in the U12-dependent AT-AC pre-mRNA splicing pathway. RNA, 7 (3). pp. 471-482. ISSN 1355-8382

Hastings, M. L., Krainer, A. R. (2001) Pre-mRNA splicing in the new millennium. Current Opinion in Cell Biology, 13 (3). pp. 302-309. ISSN 0955-0674

Helfman, D. M. (1993) Generation of Protein Isoform Diversity by Alternative Rna Splicing. Journal of General Physiology, 102 (6). A5-A5. ISSN 0022-1295

Helfman, D. M., Guo, W., Lees-Miller, J. P., Mulligan, G. J., Tsukahara, T., Wormsley, S. (1991) Alternative Rna Splicing in the Control of Cytoskeletal Protein Gene-Expression. Journal of Muscle Research and Cell Motility, 12 (5). p. 487. ISSN 0142-4319

Helfman, D. M., Guo, W., Mulligan, G. J., Tsukahara, T., Wormsley, S. (1991) Alternative Rna Splicing in the Control of Gene Expression. Journal of Cellular Biochemistry, 47 (Suppl ). p. 15.

Horowitz, D. S., Kobayashi, R., Krainer, A. R. (1997) A new cyclophilin and the human homologues of yeast Prp3 and Prp4 form a complex associated with U4/U6 snRNPs. Rna-a Publication of the Rna Society, 3 (12). pp. 1374-1387. ISSN 1355-8382

Horowitz, D. S., Krainer, A. R. (1997) A human protein required for the second step of pre-mRNA splicing is functionally related to a yeast splicing factor. Genes & Development, 11 (1). pp. 139-151. ISSN 0890-9369

Hou, V. C., Lersch, R., Gee, S. L., Ponthier, J. L., Lo, A. J., Wu, M., Turck, C. W., Koury, M., Krainer, A. R., Mayeda, A., Conboy, J. G. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. Embo Journal, 21 (22). pp. 6195-6204. ISSN 0261-4189

Hua, Yimin, Sahashi, Kentaro, Rigo, Frank, Hung, Gene, Bennett, C. Frank, Krainer, AdrianR (2013) Correction of RNA Splicing with Antisense Oligonucleotides as a Therapeutic Strategy for a Neurodegenerative Disease. In: Chembiomolecular Science. Springer Japan, pp. 301-313. ISBN 978-4-431-54037-3

Huang, S., Spector, D. L. (1997) Pre-mRNA splicing: Nuclear organization of factors and substrates. In: Eukaryotic mRNA processing. Frontiers in Molecular Biology . IRL Press at Oxford University Press, pp. 37-67. ISBN 9780199634187

J

Jimenez-Garcia, L. F., Spector, D. L. (1992) Reorganization of the Pre-Messenger-Rna Splicing Apparatus Upon Adenovirus Infection. Molecular Biology of the Cell, 3. A322-A322. ISSN 1059-1524

K

Khoo, B., Krainer, A. R. (2009) Splicing therapeutics in SMN2 and APOB. Current Opinion in Molecular Therapeutics, 11 (2). pp. 108-115. ISSN 1464-8431

Kilpatrick, B. A., Gelinas, R. E., Broker, T. R., Chow, L. T. (1979) Comparison of late mRNA splicing among class B and class C adenoviruses. Journal of Virology, 30 (3). pp. 899-912. ISSN 0022-538X

Krainer, A. (2012) Pre-mRNA Splicing Mechanisms, Misregulation in Disease, and Therapeutic Strategies. Blood, 120 (21). ISSN 0006-4971

Krainer, A. R. (2011) Oligonucleotide therapeutics for correcting defective RNA splicing. FEBS Journal, 278 (Issue ). p. 11. ISSN 1742-464X

Krainer, A. R. (2015) Splicing: still so much to learn. RNA, 21 (4). pp. 500-1. ISSN 1355-8382

Krainer, A. R. (2011) Talk from Adrian Krainer at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

Krainer, A. R., Maniatis, T. (1985) Multiple factors including the small nuclear ribonucleoproteins U1 and U2 are necessary for pre-mRNA splicing in vitro. Cell, 42 (3). pp. 725-36. ISSN 0092-8674 (Print)0092-8674

Krainer, A. R., Maniatis, T. (1988) RNA splicing. In: Frontiers in Molecular Biology: Transcription and splicing. IRL Press, Oxford, pp. 131-206. ISBN 9781852210809

Krainer, A. R., Maniatis, T., Ruskin, B., Green, M. R. (1984) Normal and mutant human beta-globin pre-mRNAs are faithfully and efficiently spliced in vitro. Cell, 36 (4). pp. 993-1005. ISSN 0092-8674 (Print)0092-8674

Krainer, A. R., Mayeda, A., Helfman, D., Conway, G. C., Kozak, D. (1991) Biochemistry of Mammalian Nuclear Pre-Messenger Rna Splicing and Splice Site Selection. Journal of Cellular Biochemistry, 47 (Suppl ). p. 45.

Krainer, A. R., Reed, R., Maniatis, T. (1985) Mechanisms of human β-globin pre-mRNA splicing. In: Proceedings of the Robert A. Welch Foundation Conferences on Chemical Research. Robert A. Welch Foundation, pp. 353-378. ISBN 0557-1588

Krainer, A. R., Reed, R., Maniatis, T. (1985) Sequences and factors involved in pre-mRNA splicing in vitro. In: Sequence specificity in transcription and translation: proceedings of a conference from a UCLA symposium held in Steamboat Springs, Colorado, April, 1985. A.R. Liss, New York, pp. 461-473. ISBN 9780845126295

L

Lees-Miller, J. P., Goodwin, L. O., Helfman, D. M. (1990) Three novel brain tropomyosin isoforms are expressed from the rat alpha-tropomyosin gene through the use of alternative promoters and alternative RNA processing. Mol Cell Biol, 10 (4). pp. 1729-42. ISSN 0270-7306 (Print)0270-7306 (Linking)

Lees-Miller, J. P., Yan, A., Helfman, D. M. (1990) Structure and complete nucleotide sequence of the gene encoding rat fibroblast tropomyosin 4. J Mol Biol, 213 (3). pp. 399-405. ISSN 0022-2836 (Print)0022-2836 (Linking)

Liu, H. X., Cartegni, L., Zhang, M. Q., Krainer, A. R. (2001) A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nature Genetics, 27 (1). pp. 55-58. ISSN 1061-4036

Liu, H. X., Chew, S. L., Cartegni, L., Zhang, M. Q., Krainer, A. R. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Molecular and Cellular Biology, 20 (3). pp. 1063-1071. ISSN 0270-7306

Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R., Krainer, A. R., Barta, A. (1999) atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes & Development, 13 (8). pp. 987-1001. ISSN 0890-9369

M

Majerciak, V., Yamanegi, K., Allemand, E., Kruhlak, M., Krainer, A. R., Zheng, Z. M. (2008) Kaposi sarcoma-associated herpesvirus ORF57 functions as a viral splicing factor and promotes the expression of intron-containing viral lytic genes in spliceosome-mediated RNA splicing. J Virol, 82 (6). pp. 2792-2801.

Maroney, P. A., Hannon, G. J., Denker, J. A., Nilsen, T. W. (1990) The nematode spliced leader RNA participates in trans-splicing as an Sm snRNP. Embo Journal, 9 (11). pp. 3667-3673. ISSN 0261-4189

Maroney, P. A., Hannon, G. J., Shambaugh, J. D., Nilsen, T. W. (1991) Intramolecular base pairing between the nematode spliced leader and its 5' splice site is not essential for trans-splicing in vitro. EMBO Journal, 10 (12). pp. 3869-3875. ISSN 02614189 (ISSN)

Mayeda, A., Badolato, J., Kobayashi, R., Zhang, M. Q., Gardiner, E. M., Krainer, A. R. (1999) Purification and characterization of human RNPS1: a general activator of pre-mRNA splicing. EMBO Journal, 18 (16). pp. 4560-4570. ISSN 0261-4189

Mayeda, A., Krainer, A. R. (2012) In vitro splicing assays. In: Alternative pre-mRNA Splicing: Theory and Protocols. Wiley, pp. 321-330. ISBN 9783527636785

Mayeda, A., Krainer, A. R. (1999) Mammalian in vitro splicing assays. Methods in Molecular Biology, 118. pp. 315-21. ISSN 1064-3745 (Print)1064-3745

Mayeda, A., Krainer, A. R. (1999) Preparation of HeLa cell nuclear and cytosolic S100 extracts for in vitro splicing. Methods in Molecular Biology, 118. pp. 309-14. ISSN 1064-3745 (Print)1064-3745

Mayeda, A., Munroe, S. H., Xu, R. M., Krainer, A. R. (1998) Distinct functions of the closely related tandem RNA-recognition motifs of hnRNP A1. RNA, 4 (9). pp. 1111-1123. ISSN 1355-8382

Mayeda, A., Screaton, G. R., Chandler, S. D., Fu, X. D., Krainer, A. R. (1999) Substrate specificities of SR proteins in constitutive splicing are determined by their RNA recognition motifs and composite pre-mRNA exonic elements. Molecular and Cellular Biology, 19 (3). pp. 1853-1863. ISSN 0270-7306

Mayeda, A., Zahler, A. M., Krainer, A. R., Roth, M. B. (1992) Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing. Proceedings of the National Academy of Sciences of the United States of America, 89 (4). pp. 1301-1304. ISSN 0027-8424

Monroe, S. H., Mayeda, A., Krainer, A. R. (1994) Role of hnRNP A1 structural domains in messenger-RNA splicing and RNA-RNA annealing. Journal of Cellular Biochemistry. p. 116. ISSN 0730-2312

Murray, M. V. (1999) Role of phosphorylation in pre-mRNA splicing. Frontiers of Hormone Research, 25. pp. 83-100. ISSN 0301-3073 (Print)

N

Nilsson, C. E., Petersen-Mahrt, S., Durot, C., Shtrichman, R., Krainer, A. R., Kleinberger, T., Akusjarvi, G. (2001) The adenovirus E4-ORF4 splicing enhancer protein interacts with a subset of phosphorylated SR proteins. EMBO Journal, 20 (4). pp. 864-871. ISSN 0261-4189

Nomakuchi, T. T., Rigo, F., Aznarez, I., Krainer, A. R. (2016) Antisense oligonucleotide-directed inhibition of nonsense-mediated mRNA decay. Nat Biotechnol, 34 (2). pp. 164-166. ISSN 1546-1696 (Electronic)1087-0156 (Linking)

Nussaume, L., Harrison, K., Klimyuk, V., Martienssen, R., Sundaresan, V., Jones, J. D. G. (1995) Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator. Molecular & General Genetics, 249 (1). pp. 91-101. ISSN 0026-8925

O

Okunola, H. L., Krainer, A. R. (2009) Cooperative-binding and splicing-repressive properties of hnRNP A1. Mol Cell Biol, 29 (20). pp. 5620-5631.

P

Potashkin, J., Frendewey, D. (1989) Splicing of the U6 RNA precursor is impaired in fission yeast pre-mRNA splicing mutants. Nucleic Acids Res, 17 (19). pp. 7821-31. ISSN 0305-1048

R

Rigo, F., Hua, Y. M., Chun, S. J., Prakash, T. P., Krainer, A. R., Bennett, C. F. (2012) Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing. Nature Chemical Biology, 8 (6). pp. 555-561. ISSN 1552-4450

Roca, X., Krainer, A. R. (2013) RNA Splicing. In: Brenner's Encyclopedia of Genetics. Elsevier Science. ISBN 9780080961569

Roca, X., Krainer, A. R. (2009) Recognition of atypical 5' splice sites by shifted base-pairing to U1 snRNA. Nat Struct Mol Biol, 16 (2). pp. 176-182.

Roca, X., Krainer, A. R. (2009) A splicing component adapted to gene silencing. Nat Biotechnol, 27 (3). pp. 250-1. ISSN 1546-1696 (Electronic)1087-0156 (Linking)

Ruskin, B., Krainer, A. R., Maniatis, T., Green, M. R. (1984) Excision of an intact intron as a novel lariat structure during pre-mRNA splicing in vitro. Cell, 38 (1). pp. 317-31. ISSN 0092-8674 (Print)0092-8674

S

Sacco-Bubulya, P. A., Spector, D. L. (2001) Interchromatin granule clusters are essential for coordinating transcription and pre-mRNA splicing. Molecular Biology of the Cell, 12. 103A-103A. ISSN 1059-1524

Selvakumar, M., Helfman, D. M. (1999) Exonic splicing enhancers contribute to the use of both 3' and 5' splice site usage of rat beta-tropomyosin pre-mRNA. Rna, 5 (3). pp. 378-94. ISSN 1355-8382 (Print)

Shi, H., Xu, R. M. (2003) Crystal structure of the Drosophila Mago nashi-Y14 complex. Genes & Development, 17 (8). pp. 971-976. ISSN 0890-9369

Sleigh, M. J. (1978) Spliced Messenger-Rnas of Adenovirus 2 and Sv40 - Review. Proceedings of the Australian Biochemical Society, 11. Q9-Q9. ISSN 0067-1703

Stephens, C., Harlow, E. (1987) Differential splicing yields novel adenovirus 5 E1A mRNAs that encode 30 kd and 35 kd proteins. Embo J, 6 (7). pp. 2027-35. ISSN 0261-4189

Sun, Q., Mayeda, A., Hampson, R. K., Krainer, A. R., Rottman, F. M. (1993) General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer. Genes & Development, 7 (12b). pp. 2598-608. ISSN 0890-9369 (Print)0890-9369

T

Thorsen, K., Mansilla, F., Schepeler, T., Oster, B., Rasmussen, M. H., Dyrskjot, L., Karni, R., Akerman, M., Krainer, A. R., Laurberg, S., Andersen, C. L., Orntoft, T. F. (2011) Alternative splicing of SLC39A14 in colorectal cancer is regulated by the Wnt pathway. Molecular and Cellular Proteomics, 10 (1).

Tilgner, H., Knowles, D. G., Johnson, R., Davis, C. A., Chakrabortty, S., Djebali, S., Curado, J., Snyder, M., Gingeras, T. R., Guigo, R. (2012) Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for IncRNAs. Genome Research, 22 (9). pp. 1616-1625. ISSN 1088-9051

V

van Oordt, W. V., Diaz-Meco, M. T., Lozano, J., Krainer, A. R., Moscat, J., Caceres, J. F. (2000) The MKK3/6-p38-signaling cascade alters the subcellular distribution of hnRNP A1 and modulates alternative splicing regulation. Journal of Cell Biology, 149 (2). pp. 307-316. ISSN 0021-9525

W

Wanner, L. A., Li, G., Ware, D., Somssich, I. E., Davis, K. R. (1995) The phenylalanine ammonia-lyase gene family in Arabidopsis thaliana. Plant Mol Biol, 27 (2). pp. 327-38. ISSN 0167-4412 (Print)

Wu, J., Akerman, M., Sun, S., McCombie, W. R., Krainer, A. R., Zhang, M. Q. (2011) SpliceTrap: a method to quantify alternative splicing under single cellular conditions. Bioinformatics, 27 (21). 3010-3016 . ISSN 1367-4803

Wu, Q., Krainer, A. R. (1999) AT-AC Pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes. Molecular and Cellular Biology, 19 (5). pp. 3225-3236. ISSN 0270-7306

Wu, Q., Krainer, A. R. (1998) Purine-rich enhancers function in the AT-AC pre-mRNA splicing pathway and do so independently of intact U1 snRNP. RNA, 4 (12). pp. 1664-1673. ISSN 1355-8382

Wu, X., Wang, S. H., Sun, J., Krainer, A. R., Hua, Y., Prior, T. W. (2017) A-44G transition in SMN2 intron 6 protects patients with spinal muscular atrophy. Hum Mol Genet. ISSN 0964-6906

X

Xiong, H. Y., Alipanahi, B., Lee, L. J., Bretschneider, H., Merico, D., Yuen, R. K., Hua, Y., Gueroussov, S., Najafabadi, H. S., Hughes, T. R., Morris, Q., Barash, Y., Krainer, A. R., Jojic, N., Scherer, S. W., Blencowe, B. J., Frey, B. J. (2014) RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science, 347 (6218). ISSN 0036-8075

Z

Zhang, C., Li, W. H., Krainer, A. R., Zhang, M. Q. (2008) RNA landscape of evolution for optimal exon and intron discrimination. Proc Natl Acad Sci U S A, 105 (15). 5797-5802 .

Zhang, M. Q., Marr, T. G. (1993) A weight array method for splicing signal analysis. Comput Appl Biosci, 9 (5). pp. 499-509. ISSN 0266-7061 (Print)

Zhu, J., Krainer, A. R. (2000) Pre-mRNA splicing in the absence of an SR protein RS domain. Genes & Development, 14 (24). pp. 3166-3178. ISSN 0890-9369

This list was generated on Wed Jul 19 20:54:59 2017 EDT.
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