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Zaki, A., Mitra, P. P., Rasmussen, L. K., Chatterjee, S. (March 2019) Estimate exchange over network is good for distributed hard thresholding pursuit. Signal Processing, 156. pp. 1-11. ISSN 01651684 (ISSN)

Lin, M. K., Takahashi, Y. S., Huo, B. X., Hanada, M., Nagashima, J., Hata, J., Tolpygo, A. S., Ram, K., Lee, B. C., Miller, M. I., Rosa, M. G., Sasaki, E., Iriki, A., Okano, H., Mitra, P. (February 2019) A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Elife, 8. ISSN 2050-084x

Lee, B. C., Tward, D. J., Mitra, P. P., Miller, M. I. (December 2018) On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. PLoS Comput Biol, 14 (12). e1006610. ISSN 1553-734x

Majka, P., Rosa, M. G. P., Bai, S., Chan, J. M., Huo, B. X., Jermakow, N., Lin, M. K., Takahashi, Y. S., Wolkowicz, I. H., Worthy, K. H., Rajan, R., Reser, D. H., Wójcik, D. K., Okano, H., Mitra, P. P. (October 2018) Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey. Brain Structure and Function. pp. 1-21. ISSN 18632653 (ISSN)

Allegra, N., Bamieh, B., Mitra, P., Sire, C. (January 2018) Phase transitions in distributed control systems with multiplicative noise. Journal of Statistical Mechanics-Theory and Experiment. ISSN 1742-5468

Li, Y., Wang, D., Ascoli, G. A., Mitra, P., Wang, Y. (August 2017) Metrics for comparing neuronal tree shapes based on persistent homology. PLoS One, 12 (8). e0182184. ISSN 1932-6203

Kim, Yongsoo, Yang, Guangyu Robert, Pradhan, Kith, Venkataraju, Kannan Umadevi, Bota, Mihail, García del Molino, Luis Carlos, Fitzgerald, Greg, Ram, Keerthi, He, Miao, Levine, Jesse Maurica, Mitra, Partha, Huang, Z. Josh, Wang, Xiao-Jing, Osten, Pavel (2017) Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism. Cell, 171 (2). 456-469.e22. ISSN 0092-8674

Chen, Y., McElvain, L., Tolpygo, A., Ferrante, D., Karten, H., Mitra, P., Kleinfeld, D., Freund, Y. (2017) The active atlas: Combining 3D anatomical models with texture detectors. Lecture Notes in Computer Science, 10433. pp. 3-11. ISSN 978-331966181-0

Majka, P., Chaplin, T. A., Yu, H. H., Tolpygo, A., Mitra, P. P., Wojcik, D. K., Rosa, M. G. (August 2016) Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. J Comp Neurol, 524 (11). pp. 2161-2181. ISSN 1096-9861 (Electronic)0021-9967 (Linking)

Griffin, A., Tolpygo, A., Parikh, G., Turtzo, C., Moses, A., Ray-Chaudhury, A., Dardzinksi, B., Mitra, P., Latour, L. (July 2016) MRI EVALUATION OF MICROBLEEDS MAY REVEAL ONLY THE TIP OF THE ICEBERG: A 3D HISTOLOGICAL ANALYSIS. Journal of Neurotrauma, 33 (13). A59-A59. ISSN 0897-7151

Gomez-Marin, A., Oron, E., Gakamsky, A., Dan, Valente, Benjamini, Y., Golani, I. (June 2016) Generative rules of Drosophila locomotor behavior as a candidate homology across phyla. Sci Rep, 6. p. 27555. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Jeong, M., Kim, Y., Kim, J., Ferrante, D. D., Mitra, P. P., Osten, P., Kim, D. (February 2016) Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports, 6. ISSN 20452322

Shemesh, N., Jespersen, S. N., Alexander, D. C., Cohen, Y., Drobnjak, I., Dyrby, T. B., Finsterbusch, J., Koch, M. A., Kuder, T., Laun, F., Lawrenz, M., Lundell, H., Mitra, P. P., Nilsson, M., Ozarslan, E., Topgaard, D., Westin, C. F. (January 2016) Conventions and nomenclature for double diffusion encoding NMR and MRI. Magn Reson Med, 75 (1). pp. 82-87. ISSN 1522-2594 (Electronic)0740-3194 (Linking)

Liu, J., Lee, H. J., Weitz, A. J., Fang, Z., Lin, P., Choy, M., Fisher, R., Pinskiy, V., Tolpygo, A., Mitra, P., Schiff, N., Lee, J. H. (December 2015) Frequency-selective control of cortical and subcortical networks by central thalamus. Elife, 4. e09215. ISSN 2050-084X (Electronic)2050-084X (Linking)

Pinskiy, V., Jones, J., Tolpygo, A. S., Franciotti, N., Weber, K., Mitra, P. P. (July 2015) High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique. PLoS One, 10 (7). e0102363. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Megjhani, M., Rey-Villamizar, N., Merouane, A., Lu, Y., Mukherjee, A., Trett, K., Chong, P., Harris, C., Shain, W., Roysam, B. (July 2015) Population-scale Three-dimensional Reconstruction and Quantitative Profiling of Microglia Arbors. Bioinformatics, 31 (13). pp. 2190-2198. ISSN 1367-4803

Okano, Hideyuki, Mitra, Partha (April 2015) Brain-mapping projects using the common marmoset. Neuroscience Research, 93. pp. 3-7. ISSN 0168-0102

Mitra, Partha P. (September 2014) The Circuit Architecture of Whole Brains at the Mesoscopic Scale. Neuron, 83 (6). pp. 1273-1283. ISSN 0896-6273

Cressy, M., Valente, D., Altick, A., Kockenmesiter, E., Honegger, K., Qin, H., Mitra, P. P., Dubnau, J. (May 2014) Laboratory evolution of adenylyl cyclase independent learning in Drosophila and missing heritability. Genes, Brain and Behavior, 13 (6). pp. 565-577. ISSN 16011848

Grange, P., Bohland, J. W., Okaty, B. W., Sugino, K., Bokil, H., Nelson, S. B., Ng, L., Hawrylycz, M., Mitra, P. P. (April 2014) Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5397-5402. ISSN 0027-8424

Kleinfeld, D., Mitra, P. P. (March 2014) Spectral methods for functional brain imaging. Cold Spring Harbor Protocols, 2014 (3). pp. 248-62. ISSN 1559-6095

Striedter, G. F., Belgard, T. G., Chen, C. C., Davis, F. P., Finlay, B. L., Gunturkun, O., Hale, M. E., Harris, J. A., Hecht, E. E., Hof, P. R., Hofmann, H. A., Holland, L. Z., Iwaniuk, A. N., Jarvis, E. D., Karten, H. J., Katz, P. S., Kristan, W. B., Macagno, E. R., Mitra, P. P., Moroz, L. L., Preuss, T. M., Ragsdale, C. W., Sherwood, C. C., Stevens, C. F., Stuttgen, M. C., Tsumoto, T., Wilczynski, W. (2014) NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species. Brain, Behavior and Evolution, 83 (1). pp. 1-8. ISSN 00068977 (ISSN)

Karten, H. J., Brzozowska-Prechtl, A., Lovell, P. V., Tang, D. D., Mello, C. V., Wang, H., Mitra, P. P. (November 2013) Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas. Journal of Comparative Neurology, 521 (16). pp. 3702-15. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)

Gakamsky, A., Oron, E., Valente, D., Mitra, P. P., Segal, D., Benjamini, Y., Golani, I. (October 2013) The Angular Interval between the Direction of Progression and Body Orientation in Normal, Alcohol- and Cocaine Treated Fruit Flies. PLoS ONE, 8 (10). ISSN 19326203 (ISSN)

Devor, Anna, Bandettini, Peter A, Boas, David A, Bower, James M, Buxton, Richard B, Cohen, Lawrence B, Dale, Anders M, Einevoll, Gaute T, Fox, Peter T, Franceschini, Maria Angela, Friston, Karl J, Fujimoto, James G, Geyer, Mark A, Greenberg, Joel H, Halgren, Eric, Hämäläinen, Matti S, Helmchen, Fritjof, Hyman, Bradley T, Jasanoff, Alan, Jernigan, Terry L, Judd, Lewis L, Kim, Seong-Gi, Kleinfeld, David, Kopell, Nancy J, Kutas, Marta, Kwong, Kenneth K, Larkum, Matthew E, Lo, Eng H, Magistretti, Pierre J, Mandeville, Joseph B, Masliah, Eliezer, Mitra, Partha P, Mobley, William C, Moskowitz, Michael A, Nimmerjahn, Axel, Reynolds, John H, Rosen, Bruce R, Salzberg, Brian M, Schaffer, Chris B, Silva, Gabriel A, So, Peter T C., Spitzer, Nicholas C, Tootell, Roger B, Van Essen, David C, Vanduffel, Wim, Vinogradov, Sergei A, Wald, Lawrence L, Wang, Lihong V, Weber, Bruno, Yodh, Arjun G (October 2013) The Challenge of Connecting the Dots in the B.R.A.I.N. Neuron, 80 (2). pp. 270-274. ISSN 0896-6273

Menashe, I., Grange, P., Larsen, E. C., Banerjee-Basu, S., Mitra, P. P. (July 2013) Co-expression Profiling of Autism Genes in the Mouse Brain. PLoS Computational Biology, 9 (7). ISSN 1553734X

Mitra, P. P., Rosa, M. G., Karten, H. J. (June 2013) Panoptic Neuroanatomy: Digital Microscopy of Whole Brains and Brain-Wide Circuit Mapping. Brain, Behavior and Evolution, 81 (4). pp. 203-205. ISSN 00068977 (ISSN)

Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P. (2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. Quantitative Biology, 1 (1). pp. 91-100. ISSN 2095-4689

Pinskiy, V., Tolpygo, A. S., Jones, J., Weber, K., Franciotti, N., Mitra, P. P. (2013) A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal of Neuroscience Methods, 218 (2). pp. 206-21. ISSN 0165-0270

Grange, P., Bohland, J. W., Hawrylycz, M., Mitra, P. P. (November 2012) Brain Gene Expression Analysis: a MATLAB toolbox for the analysis of brain-wide gene-expression data. arXiv. (Unpublished)

Vidne, M., Ahmadian, Y., Shlens, J., Pillow, J. W., Kulkarni, J., Litke, A. M., Chichilnisky, E. J., Simoncelli, E., Paninski, L. (August 2012) Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. Journal of Computational Neuroscience, 33 (1). pp. 97-121. ISSN 09295313 (ISSN)

Grange, P., Mitra, Partha P. (March 2012) Computational neuroanatomy and gene expression: Optimal sets of marker genes for brain regions. 46th Annual Conference on Information Sciences and Systems (CISS).

Helmstaedter, M., Mitra, P. P. (February 2012) Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology, 22 (1). pp. 162-169. ISSN 09594388 (ISSN)

Bamieh, B., Jovanović, M. R., Mitra, P., Patterson, S. (2012) Coherence in large-scale networks: Dimension-dependent limitations of local feedback. IEEE Transactions on Automatic Control, 57 (9). pp. 2235-2249.

Bokil, H. S., Andrews, P., Kulkarni, J. E., Mehta, S., Mitra, P. P. (September 2010) Chronux: A platform for analyzing neural signals. Journal of Neuroscience Methods, 10 (Supp 1). pp. 146-151.

Bolduc, F. V., Valente, D., Nguyen, A. T., Mitra, P. P., Tully, T. (July 2010) An assay for social interaction in Drosophila fragile X mutants. Fly (Austin), 4 (3). ISSN 1933-6942 (Electronic) 1933-6934 (Linking)

Bohland, J. W., Bullock, D., Guenther, F. H. (April 2010) Neural representations and mechanisms for the performance of simple speech sequences. Journal of Cognitive Neuroscience, 22 (7). pp. 1504-1529.

Menzer, D. L., Bokil, H., Ryou, J. W., Schiff, N. D., Purpura, K. P., Mitra, P. P. (February 2010) Characterization of trial-to-trial fluctuations in local field potentials recorded in cerebral cortex of awake behaving macaque. Journal of Neuroscience Methods, 186 (2). pp. 250-261.

Bohland, J. W., Bokil, H., Pathak, S. D., Lee, C. K., Ng, L., Lau, C., Kuan, C., Hawrylycz, M., Mitra, P. P. (February 2010) Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods, 50 (2). pp. 105-112.

Erlich, Y., Gordon, A., Brand, M., Hannon, G. J., Mitra, P. P. (February 2010) Compressed genotyping. IEEE Transactions on Information Theory, 56 (2). pp. 706-723.

Bohland, J. W., Bokil, H., Allen, C. B., Mitra, P. P. (September 2009) The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PLoS ONE, 4 (9). e7200. ISSN 1932-6203 (Electronic)

Feher, O., Wang, H., Saar, S., Mitra, P. P., Tchernichovski, O. (May 2009) De novo establishment of wild-type song culture in the zebra finch. Nature, 459 (7246). pp. 564-568. ISSN 0028-0836

Ng, L., Bernard, A., Lau, C., Overly, C. C., Dong, H.-W., Kuan, C., Pathak, S., Sunkin, S. M., Dang, C., Bohland, J. W., Bokil, H. S., Mitra, P. P., Puelles, L., Hohmann, J., Anderson, D. J., Lein, E. S., Jones, A. R., Hawrylycz, M. (March 2009) An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci, 12 (3). pp. 356-362. ISSN 1097-6256

Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., Haber, S. N., Hawrylycz, M., Herrera, D. G., Hilgetag, C. C., Huang, Z. J., Jones, A., Jones, E. G., Karten, H. J., Kleinfeld, D., Kotter, R., Lester, H. A., Lin, J. M., Mensh, B. D., Mikula, S., Panksepp, J., Price, J. L., Safdieh, J., Saper, C. B., Schiff, N. D., Schmahmann, J. D., Stillman, B. W., Svoboda, K., Swanson, L. W., Toga, A. W., Van Essen, D. C., Watson, J. D., Mitra, P. P. (March 2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology, 5 (3). e1000334. ISSN 1553734X

Erlich, Y., Mitra, P. P., Delabastide, M., McCombie, W. R., Hannon, G. J. (August 2008) Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nature Methods, 5 (8). 679 - 682.

Lin, J. M., Bohland, J. W., Andrews, P., Burns, G. A., Allen, C. B., Mitra, P. P. (April 2008) An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006. PLoS ONE, 3 (4). e2052. ISSN 1932-6203 (Electronic)

Saar, S., Mitra, P. P. (January 2008) A technique for characterizing the development of rhythms in bird song. PLoS ONE, 3 (1). e1641.

Bamieh, B., Jovanovic, M., Mitra, P. P., Patterson, S. (2008) Effect of topological dimension on rigidity of vehicle formations: Fundamental limitations of local feedback. IEEE Conference on Decision and Control. pp. 369-374.

Valente, D., Golani, I., Mitra, P. P. (October 2007) Analysis of the Trajectory of Drosophila melanogaster in a Circular Open Field Arena. PLoS ONE, 2 (10). e1083. ISSN 1932-6203 (Electronic)

Valente, D., Wang, H., Andrews, P., Mitra, P. P. (October 2007) Characterizing animal behavior through audio and video signal processing. IEEE Multimedia, 14 (4). pp. 32-41. ISSN 1070-986X

DeCoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (May 2007) Oscillations of local field potentials in the rat dorsal striatum during spontaneous and instructed behaviors. Journal of Neurophysiology, 97 (5). pp. 3800-3805. ISSN 0022-3077

Mitra, P. P. (April 2007) NIH Conference on Knowledge Environments for Biomedical Research (December 11-12, 2006). Neuroinformatics, 5 (2). pp. 139-140. ISSN 1539-2791

Decoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (March 2007) Learning-related coordination of striatal and hippocampal theta rhythms during acquisition of a procedural maze task. Proc Natl Acad Sci U S A, 104 (13). pp. 5644-9. ISSN 0027-8424 (Print)

Bokil, H. S., Purpura, K., Schoffelen, J. M., Thomson, D., Mitra, P. P. (January 2007) Comparing spectra and coherences for groups of unequal size. J Neurosci Methods, 159 (2). pp. 337-45. ISSN 0165-0270 (Print)

Bokil, H. S., Mitra, P. P. (2007) Non-parametric methods for the analysis of neurobiological time-series data. 46th IEEE Conference on Decision and Control, 2007. pp. 5833-5838.

Sengupta, A. M., Mitra, P. P. (December 2006) Capacity of multivariate channels with multiplicative noise: Random matrix techniques and large-N expansions (2). Journal of Statistical Physics, 125 (5-6). pp. 1227-1246. ISSN 0022-4715

Mitra, P. P., Maniar, H. (September 2006) Concentration maximization and local basis expansions (LBEX) for linear inverse problems. IEEE Trans Biomed Eng, 53 (9). pp. 1775-82. ISSN 0018-9294 (Print)

Mitra, P. P., Khammash, M. (September 2006) Special issue on "Control biology - Emerging field of life science that connects biology and control". Asian Journal of Control, 8 (3). III-IV. ISSN 1561-8625

Bokil, H. S., Pesaran, B., Andersen, R. A., Mitra, P. P. (August 2006) A method for detection and classification of events in neural activity. IEEE Trans Biomed Eng, 53 (8). pp. 1678-87. ISSN 0018-9294 (Print)

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Womelsdorf, T., Fries, P., Mitra, P. P., Desimone, R. (2006) Gamma-band synchronization in visual cortex predicts speed of change detection. Nature, 439 (7077). pp. 733-736. ISSN 00280836

Sigloch, K., Andrews, M. R., Mitra, P. P., Thomson, D. J. (June 2005) Communicating over nonstationary nonflat wireless channels. IEEE Transactions on Signal Processing, 53 (6). pp. 2216-2227. ISSN 1053587X

Deregnaucourt, S., Mitra, P. P., Feher, O., Pytte, C., Tchernichovski, O. (February 2005) How sleep affects the developmental learning of bird song. Nature, 433 (7027). pp. 710-716. ISSN 0028-0836

Mitra, P. P. (2005) Bending a slab of neural tissue. http://arXiv:q-bio/0510034v2 [q-bio.TO]. pp. 1-6.

Menzer, D., Hudson, A. E., Schiff, N. D., Bokil, H., Pesaran, B., Purpura, K. P., Mitra, P. P. (2005) Task dependent modulation of monkey frontal lobe field potentials during visual working memory. Journal of Cognitive Neuroscience. p. 146. ISSN 0898-929X

Bokil, H., Pesaran, B., Andersen, R. A., Mitra, P. P. (2005) A framework for detection and classification of events in neural activity. arXiv.

Brown, E. N., Kass, R. E., Mitra, P. P. (May 2004) Multiple neural spike train data analysis: state-of-the-art and future challenges. Nature Neuroscience, 7 (5). pp. 456-461. ISSN 1097-6256

Wegener, L. G. L., Povinelli, M. L., Green, A. G., Mitra, P. P., Stark, J. B., Littlewood, P. B. (2004) The effect of propagation nonlinearities on the information capacity of WDM optical fiber systems: cross-phase modulation and four-wave mixing. Physica D: Nonlinear Phenomena, 189 (1–2). pp. 81-99. ISSN 0167-2789

Green, A. G., Mitra, P. P., Wegener, L. G. L. (2003) Effect of chromatic dispersion on nonlinear phase noise. Optics Letters, 28 (24). pp. 2455-2457. ISSN 01469592 (ISSN)

Shenoy, K. V., Meeker, D., Cao, S., Kureshi, S. A., Pesaran, B., Buneo, C. A., Batista, A. P., Mitra, P. P., Burdick, J. W., Andersen, R. A. (2003) Neural prosthetic control signals from plan activity. NeuroReport, 14 (4). pp. 591-596. ISSN 09594965 (ISSN)

Wang, S. S. H., Mitra, P. P., Clark, D. A. (January 2002) Brain evolution (Communications arising): How did brains evolve? Nature, 415 (6868). p. 135. ISSN 0028-0836

Ramanan, K., Sengupta, A., Ziedins, I., Mitra, P. P. (2002) Markov random field models of multicasting in tree networks. Advances in Applied Probability, 34 (1). pp. 58-84. ISSN 00018678 (ISSN)

Mitra, Partha P., Stark, Jason B., Green, Andrew G. (2002) Nonlinear Propagation and Information Theory. OPN Trends, 13 (3(Supp). S22-28.

Green, A. G., Littlewood, P. B., Mitra, P. P., Wegener, L. G. L. (2002) Schrödinger equation with a spatially and temporally random potential: Effects of cross-phase modulation in optical communication. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 66 (4). 046627/1-046627/12. ISSN 15393755 (ISSN)

Pesaran, B., Pezaris, J. S., Sahani, M., Mitra, P. P., Andersen, R. A. (2002) Temporal structure in neuronal activity during working memory in macaque parietal cortex. Nature Neuroscience, 5 (8). pp. 805-811. ISSN 10976256 (ISSN)

Tchernichovski, O., Mitra, P. P. (2002) Towards quantification of vocal imitation in the zebra finch. Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology, 188 (11-12). pp. 867-878. ISSN 03407594 (ISSN)

Narimanov, E. E., Mitra, P. P. (2002) The channel capacity of a fiber optics communication system: Perturbation theory. Journal of Lightwave Technology, 20 (3). pp. 530-537. ISSN 07338724 (ISSN)

Tchernichovski, O., Mitra, P. P., Lints, T., Nottebohm, F. (2001) Dynamics of the vocal imitation process: How a zebra finch learns its song. Science, 291 (5513). pp. 2564-2569. ISSN 00368075 (ISSN)

Stark, J. B., Mitra, P., Sengupta, A. (2001) Information capacity of nonlinear wavelength division multiplexing fiber optic transmission line. Optical Fiber Technology, 7 (4). pp. 275-288. ISSN 10685200 (ISSN)

Mitra, P. P., Stark, J. B. (2001) Nonlinear limits to the information capacity of optical fibre communications. Nature, 411 (6841). pp. 1027-1030. ISSN 00280836 (ISSN)

Jarvis, M. R., Mitra, P. P. (2001) Sampling properties of the spectrum and coherency of sequences of action potentials. Neural Computation, 13 (4). pp. 717-749. ISSN 08997667 (ISSN)

Clark, D. A., Mitra, P. P., Wang, S. S. H. (2001) Scalable architecture in mammalian brains. Nature, 411 (6834). pp. 189-193. ISSN 00280836 (ISSN)

Andrews, M. R., Mitra, P. P., Decarvalho, R. (2001) Tripling the capacity of wireless communications using electromagnetic polarization. Nature, 409 (6818). pp. 316-318. ISSN 00280836 (ISSN)

Jarvis, M. R., Mitra, P. P. (2000) Apnea patients characterized by 0.02 Hz peak in the multitaper spectrogram of electrocardiogram signals. Computers in Cardiology 2000. pp. 769-772.

Ribary, U., Mitra, P. (2000) Thalamo-cortical spatio-temporal dynamics and its alterations in human brain pathology. NeuroImage, 11 (5, Sup). xxv-lxviii. ISSN 1053-8119

Tchernichovski, O., Nottebohm, F., Ho, C. E., Pesaran, B., Mitra, P. P. (2000) A procedure for an automated measurement of song similarity. Animal Behaviour, 59 (6). pp. 1167-1176. ISSN 00033472 (ISSN)

Llinas, R. R., Ribary, U., Jeanmonod, D., Kronberg, E., Mitra, P. P. (December 1999) Thalamocortical dysrhythmia: A neurological and neuropsychiatric syndrome characterized by magnetoencephalography. Proceedings of the National Academy of Sciences, 96 (26). pp. 15222-15227.

Mitra, P. P., Pesaran, B. (February 1999) Analysis of dynamic brain imaging data. Biophysical Journal, 76 (2). 691-708 .

Sengupta, A. M., Mitra, P. P. (1999) Distributions of singular values for some random matrices. Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 60 (3). pp. 3389-3392. ISSN 1063651X (ISSN)

Tchernichovski, O., Lints, T., Mitra, P. P., Nottebohm, F. (1999) Vocal imitation in zebra finches is inversely related to model abundance. Proceedings of the National Academy of Sciences of the United States of America, 96 (22). pp. 12901-12904. ISSN 00278424 (ISSN)

Kleinfeld, D., Mitra, P. P., Helmchen, F., Denk, W. (1998) Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. Proceedings of the National Academy of Sciences of the United States of America, 95 (26). pp. 15741-15746. ISSN 00278424 (ISSN)

Brener, I., Mitra, P. P., Lee, D. D., Thomson, D. J., Philen, D. L. (1998) High-resolution zero-dispersion wavelength mapping in single-mode fiber. Optics Letters, 23 (19). pp. 1520-1522. ISSN 01469592 (ISSN)

Fee, M. S., Shraiman, B., Pesaran, B., Mitra, P. P. (1998) The role of nonlinear dynamics of the syrinx in the vocalizations of a songbird. Nature, 395 (6697). pp. 67-71. ISSN 00280836 (ISSN)

Kupferman, R., Mitra, P. P., Hohenberg, P. C., Wang, S. S. H. (1997) Analytical calculation of intracellular calcium wave characteristics. Biophysical Journal, 72 (6). pp. 2430-2444. ISSN 00063495 (ISSN)

Fee, M. S., Mitra, P. P., Kleinfeld, D. (1997) Central versus peripheral determinants of patterned spike activity in rat vibrissa cortex during whisking. Journal of Neurophysiology, 78 (2). pp. 1144-1149. ISSN 00223077 (ISSN)

Mitra, P. P. (1997) Diffusion in porous materials as probed by pulsed gradient NMR measurements. Physica A: Statistical Mechanics and its Applications, 241 (1-2). pp. 122-127. ISSN 03784371 (ISSN)

Kleinfeld, D., Mitra, P. P., Fee, M. S. (1997) Motor modulation of sensory input: Exploratory whisking by rat as a model system. Somatosensory and Motor Research, 14 (1). p. 63. ISSN 0899-0220

Schwartz, L. M., Hürlimann, M. D., Dunn, K. J., Mitra, P. P., Bergman, D. J. (1997) Restricted diffusion and the return to the origin probability at intermediate and long times. Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 55 (4). pp. 4225-4234. ISSN 1063651X (ISSN)

Prechtl, J. C., Cohen, L. B., Pesaran, B., Mitra, P. P., Kleinfeld, D. (1997) Visual stimuli induce waves of electrical activity in turtle cortex. Proceedings of the National Academy of Sciences of the United States of America, 94 (14). pp. 7621-7626. ISSN 00278424 (ISSN)

Mitra, P. P., Ogawa, S., Hu, X., Uǧurbil, K. (1997) The nature of spatiotemporal changes in cerebral hemodynamics as manifested in functional magnetic resonance imaging. Magnetic Resonance in Medicine, 37 (4). pp. 511-518. ISSN 07403194 (ISSN)

Fee, M. S., Mitra, P. P., Kleinfeld, D. (November 1996) Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability. Journal of Neuroscience Methods, 69 (2). pp. 175-188. ISSN 0165-0270

Fordham, E. J., Mitra, P. P., Latour, L. L. (1996) Effective Diffusion Times in Multiple-Pulse PFG Diffusion Measurements in Porous Media. Journal of Magnetic Resonance, Series A, 121 (2). pp. 187-192. ISSN 1064-1858

De Swiet, T. M., Mitra, P. P. (1996) Possible systematic errors in single-shot measurements of the trace of the diffusion tensor. Journal of Magnetic Resonance - Series B, 111 (1). pp. 15-22. ISSN 10641866 (ISSN)

Schwartz, L. M., Bergman, D. J., Dunn, K. J., Mitra, P. P. (1996) Self-diffusion in periodic porous media: A comparison of numerical simulation and eigenvalue methods. Magnetic Resonance Imaging, 14 (7-8). pp. 737-743. ISSN 0730725X (ISSN)

Ogawa, S., Mitra, P. P., Hu, X., Ugurbi, K. (1996) Spatio-temporal patterns revealed in denoised fMRI data. Electroencephalography and clinical neurophysiology. Supplement, 47. pp. 5-14. ISSN 04248155 (ISSN)

Fee, M. S., Mitra, P. P., Kleinfeld, D. (1996) Variability of extracellular spike waveforms of cortical neurons. Journal of Neurophysiology, 76 (6). pp. 3823-3833. ISSN 00223077 (ISSN)

Svoboda, K., Mitra, P. P., Block, S. M. (April 1995) Fluctuation analysis of kinesin movement. Biophys J, 68 (4 Supp). 69S. ISSN 0006-3495 (Print)

Mitra, P. P., Halperin, B. I. (1995) Effects of Finite Gradient-Pulse Widths in Pulsed-Field-Gradient Diffusion Measurements. Journal of Magnetic Resonance, Series A, 113 (1). pp. 94-101. ISSN 10641858 (ISSN)

Mitra, P. P. (1995) Multiple wave-vector extensions of the NMR pulsed-field-gradient spin-echo diffusion measurement. Physical Review B, 51 (21). pp. 15074-15078. ISSN 01631829 (ISSN)

Latour, L. L., Kleinberg, R. L., Mitra, P. P., Sotak, C. H. (1995) Pore-Size Distributions and Tortuosity in Heterogeneous Porous Media. Journal of Magnetic Resonance, Series A, 112 (1). pp. 83-91. ISSN 10641858 (ISSN)

Mitra, P. P., Latour, L. L., Kleinberg, R. L., Sotak, C. H. (1995) Pulsed Field Gradient NMR Measurements of Restricted Diffusion and the Return to the Origin Probability. Journal of Magnetic Resonance, Series A, 114 (1). pp. 47-58. ISSN 10641858 (ISSN)

Bergman, D. J., Dunn, K. J., Schwartz, L. M., Mitra, P. P. (1995) Self-diffusion in a periodic porous medium: A comparison of different approaches. Physical Review E, 51 (4). pp. 3393-3400. ISSN 1063651X (ISSN)

Svoboda, K., Mitra, P. P., Block, S. M. (December 1994) Fluctuation analysis of motor protein movement and single enzyme kinetics. Proc Natl Acad Sci U S A, 91 (25). pp. 11782-6. ISSN 0027-8424

Latour, L. L., Svoboda, K., Mitra, P. P., Sotak, C. H. (February 1994) Time-dependent diffusion of water in a biological model system. Proc Natl Acad Sci U S A, 91 (4). pp. 1229-33. ISSN 0027-8424

Kleinberg, R. L., Kenyon, W. E., Mitra, P. P. (1994) Mechanism of NMR Relaxation of Fluids in Rock. Journal of Magnetic Resonance, Series A, 108 (2). pp. 206-214. ISSN 10641858 (ISSN)

Sen, P. N., Schwartz, L. M., Mitra, P. P. (1994) Probing the structure of porous media using NMR spin echoes. Magnetic Resonance Imaging, 12 (2). pp. 227-230. ISSN 0730-725X

Schwartz, L. M., Sen, P. N., Mitra, P. P. (1994) Simulations of pulsed field gradient spin-echo measurements in porous media. Magnetic Resonance Imaging, 12 (2). pp. 241-244. ISSN 0730-725X

Sen, P. N., Schwartz, L. M., Mitra, P. P., Halperin, B. I. (1994) Surface relaxation and the long-time diffusion coefficient in porous media: Periodic geometries. Physical Review B, 49 (1). pp. 215-225. ISSN 01631829 (ISSN)

Mitra, P. P., Halperin, B. I. (1994) Understanding far-infrared absorption in the S=1 antiferromagnetic chain compound NENP. Physical Review Letters, 72 (6). pp. 912-915. ISSN 00319007 (ISSN)

Svoboda, K., Latour, L. L., Mitra, P. P., Sotak, C. H. (February 1993) Surface-to-Volume Ratio and Membrane-Permeability Derived from Time-Dependent Diffusion of Water through Biological Membranes. Biophysical Journal, 64 (2). A131-A131. ISSN 0006-3495

Mitra, P. P., Sen, P. N., Schwartz, L. M. (1993) Short-time behavior of the diffusion coefficient as a geometrical probe of porous media. Physical Review B, 47 (14). pp. 8565-8574. ISSN 01631829 (ISSN)

Latour, L. L., Mitra, P. P., Kleinberg, R. L., Sotak, C. H. (1993) Time-Dependent Diffusion Coefficient of Fluids in Porous Media as a Probe of Surface-to-Volume Ratio. Journal of Magnetic Resonance, Series A, 101 (3). pp. 342-346. ISSN 10641858 (ISSN)

Mitra, P. P., Sen, P. N., Schwartz, L. M., Le Doussal, P. (1992) Diffusion propagator as a probe of the structure of porous media. Physical Review Letters, 68 (24). pp. 3555-3558. ISSN 00319007 (ISSN)

Mitra, P. P., Sen, P. N. (1992) Effects of microgeometry and surface relaxation on NMR pulsed-field- gradient experiments: Simple pore geometries. Physical Review B, 45 (1). pp. 143-156. ISSN 01631829 (ISSN)

Mitra, P. P., Sen, P. N. (1992) Effects of surface relaxation on NMR pulsed field gradient experiments in porous media. Physica A: Statistical Mechanics and its Applications, 186 (1-2). pp. 109-114. ISSN 03784371 (ISSN)

Sarma, D. D., Krishnamurthy, H. R., Nimkar, S., Ramasesha, S., Mitra, P. P., Ramakrishnan, T. V. (1992) Electronic structure of high-Tc superconductors and related compounds. Pramana, 38 (5). L531-L538. ISSN 03044289 (ISSN)

Mitra, P. P., Halperin, B. I., Affleck, I. (1992) Temperature dependence of the electron-spin-resonance spectrum of the chain-end S=1/2 modes in an S=1 antiferromagnetic chain. Physical Review B, 45 (10). pp. 5299-5306. ISSN 01631829 (ISSN)

Bose, I. I., Mitra, P. (July 1991) Frustrated spin-1/2 model in two dimensions with a known ground state. Physical Review. B, Condensed Matter, 44 (1). pp. 443-445. ISSN 0163-1829 (Print)0163-1829

Mitra, P. P., Le Doussal, P. (1991) Long-time magnetization relaxation of spins diffusing in a random field. Physical Review B, 44 (21). pp. 12035-12038. ISSN 01631829 (ISSN)

Book Section

Günay, Cengiz, Smolinski, Tomasz G, Lytton, William W, Morse, Thomas M, Gleeson, Padraig, Crook, Sharon, Steuber, Volker, Silver, Angus, Voicu, Horatiu, Andrews, Peter, Bokil, Hemant, Maniar, Hiren, Loader, Catherine, Mehta, Samar, Kleinfeld, David, Thomson, David, Mitra, Partha P., Aaron, Gloster, Fellous, Jean-Marc (2008) Computational Intelligence in Electrophysiology: Trends and Open Problems. In: Applications of Computational Intelligence in Biology. Studies in Computational Intelligence, 122 . Springer Berlin Heidelberg, pp. 325-359. ISBN 978-3-540-78533-0

Deregnaucourt, S., Mitra, P. P., Feher, O., Maul, K. K., Lints, T. J., Tchernichovski, O. (2004) Song development: In search of the error-signal. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 364-376. ISBN 0077-8923

Tchernichovski, O., Lints, T. J., Deregnaucourt, S., Cimenser, A., Mitra, P. P. (2004) Studying the song development process rationale and methods. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 348-363. ISBN 0077-8923

Conference or Workshop Item

Andrews, P. , Saar, S., Wang, H., Valente, D., Serkhane, J., Tchernichovsky, O., Golani, I., Mitra, P. P. (October 2006) Multimedia signal processing for behavioral quantification in neuroscience. In: International Multimedia Conference: Proceedings of the 14th annual ACM international conference on Multimedia , Santa Barbara, CA.

Mitra, P. P., Maniar, H. D. (2005) Local basis expansions for MEG Source Localization. In: 5th International Conference on Bioelectromagnetism & Symposium on Noninvasive Functional Source Imaging, Minneapolis.

Maniar, H. D., Mitra, P. P. (2005) The concentration problem for vector fields. In: 5th International Conference on Bioelectromagnetism & Symposium on Noninvasive Functional Source Imaging, Minneapolis.


Mitra, P. P. (November 2018) Fast convergence for stochastic and distributed gradient descent in the interpolation limit. European Signal Processing Conference, EUSIPCO, pp. 1890-1894. ISBN 22195491 (ISSN); 9789082797015 (ISBN)

Mitra, P. P., Bokil, H. S. (2007) Observed Brain Dynamics. Oxford University Press, p. 408.


Mitra, P. P. (November 2011) Talk from Partha Mitra at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

This list was generated on Wed Feb 20 09:26:34 2019 EST.
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