Items where Community is "Pappin lab"

Paper

Song, Dongyan, Cen, Yuxin, Qian, Zhe, Wu, Xiaoli S, Rivera, Keith, Wee, Tse-Luen, Demerdash, Osama E, Chang, Kenneth, Pappin, Darryl, Vakoc, Christopher R, Tonks, Nicholas K (November 2024) PTPN23-dependent ESCRT machinery functions as a cell death checkpoint. Nature Communications, 15 (1). p. 10364. ISSN 2041-1723 (Public Dataset)

Swamynathan, Manojit M, Kuang, Shan, Watrud, Kaitlin E, Doherty, Mary R, Gineste, Charlotte, Mathew, Grinu, Gong, Grace Q, Cox, Hilary, Cheng, Eileen, Reiss, David, Kendall, Jude, Ghosh, Diya, Reczek, Colleen R, Zhao, Xiang, Herzka, Tali, Špokaitė, Saulė, Dessus, Antoine N, Kim, Seung Tea, Klingbeil, Olaf, Liu, Juan, Nowak, Dawid G, Alsudani, Habeeb, Wee, Tse-Luen, Park, Youngkyu, Minicozzi, Francesca, Rivera, Keith, Almeida, Ana S, Chang, Kenneth, Chakrabarty, Ram P, Wilkinson, John E, Gimotty, Phyllis A, Diermeier, Sarah D, Egeblad, Mikala, Vakoc, Christopher R, Locasale, Jason W, Chandel, Navdeep S, Janowitz, Tobias, Hicks, James B, Wigler, Michael, Pappin, Darryl J, Williams, Roger L, Cifani, Paolo, Tuveson, David A, Laporte, Jocelyn, Trotman, Lloyd C (October 2024) Dietary pro-oxidant therapy by a vitamin K precursor targets PI 3-kinase VPS34 function. Science, 386 (6720). eadk9167. ISSN 0036-8075

Dantas, Ezequiel, Murthy, Anirudh, Ahmed, Tanvir, Ahmed, Mujmmail, Ramsamooj, Shakti, Hurd, Maurice A, Lam, Tiffany, Malbari, Murtaza, Agrusa, Christopher, Elemento, Olivier, Zhang, Chen, Pappin, Darryl J, McGraw, Timothy E, Stiles, Brendon M, Altorki, Nasser K, Goncalves, Marcus D (October 2023) TIMP1 is an early biomarker for detection and prognosis of lung cancer. Clinical and Translational Medicine, 13 (10). e1391. ISSN 2001-1326 (Public Dataset)

Yao, Min, Preall, Jonathan, Yeh, Johannes, Pappin, Darryl J, Cifani, Paolo, Zhao, Yixin, Shen, Sophia, Moresco, Philip, He, Brian, Patel, Hardik, Habowski, Amber N, King, Daniel A, Raphael, Kara L, Rishi, Arvind, Sejpal, Divyesh V, Weiss, Matthew, Tuveson, David, Fearon, Douglas T (September 2023) Plasma cells in human pancreatic ductal adenocarcinoma secrete antibodies to self-antigens. JCI Insight. e172449. ISSN 2379-3708 (Public Dataset)

Bonham, ChristopherA, Mandati, Vinay, Singh, RakeshK, Pappin, DarrylJ, Tonks, NicholasK (March 2023) Coupling substrate-trapping with proximity-labeling to identify protein tyrosine phosphatase PTP1B signaling networks. Journal of Biological Chemistry. p. 104582. ISSN 0021-9258

Yu, Allen T, Aggarwal, Disha, Pappin, Darryl, Spector, David L (December 2022) Single Oligonucleotide Capture of RNA And Temperature Elution Series ( SOCRATES ) for Identification of RNA-binding Proteins. Bio-protocol, 12 (24). e4572. ISSN 2331-8325

Paul, Shilpi, Cifani, Paolo, Pappin, Darryl, Spratt, Thomas (May 2022) Unique DNA Polymerase kappa Interactome Suggests Novel Cellular Functions. The FASEB Journal, 36 Sup (S1). ISSN 0892-6638

Brennan, Christina M, Nadella, Sandeep, Zhao, Xiang, Dima, Richard J, Jordan-Martin, Nicole, Demestichas, Breanna R, Kleeman, Sam O, Ferrer, Miriam, von Gablenz, Eva Carlotta, Mourikis, Nicholas, Rubin, Michael E, Adnani, Harsha, Lee, Hassal, Ha, Taehoon, Prum, Soma, Schleicher, Cheryl B, Fox, Sharon S, Ryan, Michael G, Pili, Christina, Goldberg, Gary, Crawford, James M, Goodwin, Sara, Zhang, Xiaoyue, Preall, Jonathan B, Costa, Ana SH, Conigliaro, Joseph, Masci, Joseph R, Yang, Jie, Tuveson, David A, Tracey, Kevin J, Janowitz, Tobias (February 2022) Oral famotidine versus placebo in non-hospitalised patients with COVID-19: a randomised, double-blind, data-intense, phase 2 clinical trial. Gut. ISSN 0017-5749

Ramsey, John S., Ammar, El-Desouky, Mahoney, Jaclyn E., Rivera, Keith, Johnson, Richard, Igwe, David O., Thannhauser, Theodore W., MacCoss, Michael J., Hall, David G., Heck, Michelle (January 2022) Host Plant Adaptation Drives Changes in Diaphorina citri Proteome Regulation, Proteoform Expression, and Transmission of ‘Candidatus Liberibacter asiaticus’, the Citrus Greening Pathogen. Phytopathology, 112 (1). pp. 101-115. ISSN 0031-949X

Sagabala, Reddy S, Londhe, Avinash D, Marquart, Krisann, Pappin, Darryl, Boivin, Benoit (2022) Role of PTP1B in the Regulation of Cholesterol Homeostasis. The FASEB Journal, 36 (S1). ISSN 0892-6638

Paul, Shilpi, Rebok, Abbey, Cifani, Paolo, Paul, Anirban, Pappin, Darryl, Huang, Tony, Spratt, Thomas (2022) Translesion DNA synthesis polymerase κ is essential to a carcinogen-induced nucleolar stress response. bioRxiv. (Submitted)

Lee, Yu-Chen, Lin, Song-Chang, Yu, Guoyu, Zhu, Ming, Song, Jian H, Rivera, Keith, Pappin, Darryl J, Logothetis, Christopher J, Panaretakis, Theocharis, Wang, Guocan, Yu-Lee, Li-Yuan, Lin, Sue-Hwa (November 2021) Prostate tumor-induced stromal reprogramming generates Tenascin C that promotes prostate cancer metastasis through YAP/TAZ inhibition. Oncogene. ISSN 0950-9232

Lee, Yu-Chen, Lin, Song-Chang, Yu, Guoyu, Zhu, Ming, Song, Jian, Rivera, Keith, Pappin, Darryl, Logothetis, Christopher, Panaretakis, Theocharis, Wang, Guocan, Yu-Lee, Li-Yuan, Lin, Sue-Hwa (November 2021) Prostate tumor-induced stromal reprogramming generates Tenascin C that promotes prostate cancer metastasis through YAP/TAZ inhibition. BioRxiv. (Unpublished)

Wei, Yiliang, Huang, Yu-Han, Skopelitis, Damianos S, Iyer, Shruti V, Costa, Ana SH, Yang, Zhaolin, Kramer, Melissa, Adelman, Emmalee R, Klingbeil, Olaf, Demerdash, Osama E, Polyanskaya, Sofya A, Chang, Kenneth, Goodwin, Sara, Hodges, Emily, McCombie, W Richard, Figueroa, Maria E, Vakoc, Christopher R (September 2021) SLC5A3-dependent myo-inositol auxotrophy in acute myeloid leukemia. Cancer Discovery. candisc.1849.2020-candisc.1849.2020. ISSN 2159-8274

Bodineau, Clément, Tomé, Mercedes, Courtois, Sarah, Costa, Ana SH, Sciacovelli, Marco, Rousseau, Benoit, Richard, Elodie, Vacher, Pierre, Parejo-Pérez, Carlos, Bessede, Emilie, Varon, Christine, Soubeyran, Pierre, Frezza, Christian, Murdoch, Piedad Del Socorro, Villar, Victor H, Durán, Raúl V (August 2021) Two parallel pathways connect glutamine metabolism and mTORC1 activity to regulate glutamoptosis. Nature Communications, 12 (1). p. 4814. ISSN 2041-1723

Cheng, Derek K, Oni, Tobiloba E, Thalappillil, Jennifer S, Park, Youngkyu, Ting, Hsiu-Chi, Alagesan, Brinda, Prasad, Nadia V, Addison, Kenneth, Rivera, Keith D, Pappin, Darryl J, Van Aelst, Linda, Tuveson, David A (May 2021) Oncogenic KRAS engages an RSK1/NF1 pathway to inhibit wild-type RAS signaling in pancreatic cancer. Proceedings of the National Academy of Sciences of USA, 118 (21). e2016904118-e2016904118. ISSN 0027-8424

Yu, Allen T, Berasain, Carmen, Bhatia, Sonam, Rivera, Keith, Liu, Bodu, Rigo, Frank, Pappin, Darryl J, Spector, David L (May 2021) PHAROH lncRNA regulates Myc translation in hepatocellular carcinoma via sequestering TIAR. eLife, 10. ISSN 2050-084X

Dugourd, Aurelien, Kuppe, Christoph, Sciacovelli, Marco, Gjerga, Enio, Gabor, Attila, Emdal, Kristina B, Vieira, Vitor, Bekker-Jensen, Dorte B, Kranz, Jennifer, Bindels, Eric MJ, Costa, Ana SH, Sousa, Abel, Beltrao, Pedro, Rocha, Miguel, Olsen, Jesper V, Frezza, Christian, Kramann, Rafael, Saez-Rodriguez, Julio (January 2021) Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses. Molecular Systems Biology, 17 (1). e9730. ISSN 1744-4292

Yu, Allen, Berasain, Carmen, Bhatia, Sonam, Rivera, Keith, Liu, Bodu, Rigo, Frank, Pappin, Darryl, Spector, David (2021) PHAROH lncRNA regulates c-Myc translation in hepatocellular carcinoma via sequestering TIAR. bioRxiv. (Submitted)

Chang, K. C., Diermeier, S. D., Yu, A. T., Brine, L. D., Russo, S., Bhatia, S., Alsudani, H., Kostroff, K., Bhuiya, T., Brogi, E., Pappin, D. J., Bennett, C. F., Rigo, F., Spector, D. L. (December 2020) MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression. Nat Commun, 11 (1). p. 6438. ISSN 2041-1723

Cheng, D. K., Oni, T. E., Park, Y., Thalappillil, J. S, Ting, H.-C., Alagesan, B., Prasad, N. V., Rivera, K. D., Pappin, D. J., Van Aelst, L., Tuveson, D. A. (September 2020) Oncogenic KRAS engages an RSK1/NF1 complex in pancreatic cancer. BioRxiv. (Unpublished)

Oni, Tobiloba E, Bautista, Carmelita, Merrill, Joseph R, Goos, Jeroen ACM, Rivera, Keith D, Miyabayashi, Koji, Biffi, Giulia, Garcia, Libia, Plenker, Dennis, Patel, Hardik, Elyada, Ela, Samaritano, Maria, Yu, Kenneth H, Pappin, Darryl J, Goggins, Michael G, Hruban, Ralph H, Lewis, Jason S, Lyons, Scott K, Yeh, Johannes T, Tuveson, David A (September 2020) Detection of incipient pancreatic cancer with novel tumor-specific antibodies in mouse models. BioRxiv. (Unpublished)

Ma, Wai Kit, Scharner, Juergen, Costa, Ana SH, Jeong, Hyun Yun, Jackson, Michaela, Rigo, Frank, Bennett, C Frank, Krainer, Adrian R (September 2020) ASO-basedPKMSplice-switching Therapy Inhibits Hepatocellular Carcinoma Cell Growth. BioRxiv. (Unpublished)

Bencze, G., Bencze, S., Rivera, K. D., Watson, J. D., Orfi, L., Tonks, N. K., Pappin, D. J. (August 2020) Mito-oncology agent: fermented extract suppresses the Warburg effect, restores oxidative mitochondrial activity, and inhibits in vivo tumor growth. Sci Rep, 10 (1). p. 14174. ISSN 2045-2322

Wilson, J., Palmeri, J., Pappin, D. (August 2020) SimpliFi: a data-to-meaning analytics engine to bring omics understanding to all. J Biomol Tech, 31 (Suppl). S1. ISSN 1524-0215 (Print)1524-0215

Wilson, J.P., Ipsaro, J. J., Del Giudice, S.N., Turna, N. S., Gauss, C. M., Dusenbury, K.H., Marquart, K., Rivera, K. D., Pappin, D. J. (March 2020) Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides. J Proteome Res, 19 (4). pp. 1459-1469. ISSN 1535-3893 (Public Dataset)

Marchione, D. M., Ilieva, I., Devins, K., Sharpe, D., Pappin, D. J., Garcia, B. A., Wilson, J. P., Wojcik, J. B. (January 2020) HYPERsol: High-Quality Data from Archival FFPE Tissue for Clinical Proteomics. J Proteome Res, 19 (2). pp. 973-983. ISSN 1535-3893 (Public Dataset)

Londhe, A. D., Bergeron, A., Curley, S. M., Zhang, F., Rivera, K. D., Kannan, A., Coulis, G., Rizvi, S. H. M., Kim, S. J., Pappin, D. J., Tonks, N. K., Linhardt, R. J., Boivin, B. (December 2019) Regulation of PTP1B activation through disruption of redox-complex formation. Nat Chem Biol, 16 (2). pp. 122-125. ISSN 1552-4450

Engle, D. D., Tiriac, H., Rivera, K. D., Pommier, A., Whalen, S., Oni, T. E., Alagesan, B., Lee, E. J., Yao, M. A., Lucito, M. S., Spielman, B., Da Silva, B., Schoepfer, C., Wright, K., Creighton, B., Afinowicz, L., Yu, K. H., Grutzmann, R., Aust, D., Gimotty, P. A., Pollard, K. S., Hruban, R. H., Goggins, M. G., Pilarsky, C., Park, Y., Pappin, D. J., Hollingsworth, M. A., Tuveson, D. A. (June 2019) The glycan CA19-9 promotes pancreatitis and pancreatic cancer in mice. Science, 364 (6446). pp. 1156-1162. ISSN 0036-8075

Melnikov, S. V., Manakongtreecheep, K., Rivera, K. D., Makarenko, A., Pappin, D. J., Soll, D. (December 2018) Muller's Ratchet and Ribosome Degeneration in the Obligate Intracellular Parasites Microsporidia. Int J Mol Sci, 19 (12). ISSN 1422-0067

Parrine, D., Wu, B. S., Muhammad, B., Rivera, K., Pappin, D., Zhao, X., Lefsrud, M. (November 2018) Proteome modifications on tomato under extreme high light induced-stress. Proteome Science, 16 (1). Article no 20. ISSN 14775956 (ISSN)

Luna, Emily, van Eck, Leon, Campillo, Tony, Weinroth, Margaret, Metcalf, Jessica, Perez-Quintero, Alvaro L, Botha, Anna-Maria, Thannhauser, Theodore W, Pappin, Darryl, Tisserat, Ned A, Lapitan, Nora LV, Argueso, Cristiana T, Ode, Paul J, Heck, Michelle L, Leach, Jan E (September 2018) Bacteria Associated with Russian Wheat Aphid (Diuraphis noxia) Enhance Aphid Virulence to Wheat. Phytobiomes Journal, 2 (3). pp. 151-164. ISSN 2471-2906

Melnikov, S. V., Rivera, K. D., Ostapenko, D., Makarenko, A., Sanscrainte, N. D., Becnel, J. J., Solomon, M. J., Texier, C., Pappin, D. J., Soll, D. (July 2018) Error-prone protein synthesis in parasites with the smallest eukaryotic genome. Proc Natl Acad Sci U S A, 115 (27). E6245-6253. ISSN 0027-8424

Krishnan, N., Felice, C., Rivera, K., Pappin, D. J., Tonks, N. K. (July 2018) DPM-1001 decreased copper levels and ameliorated deficits in a mouse model of Wilson's disease. Genes Dev, 32 (13-14). pp. 944-952. ISSN 0890-9369

Naguib, A., Mathew, G., Reczek, C. R., Watrud, K., Ambrico, A., Herzka, T., Salas, I. C., Lee, M. F., El-Amine, N., Zheng, W., Di Francesco, M. E., Marszalek, J. R., Pappin, D. J., Chandel, N. S., Trotman, L. C. (April 2018) Mitochondrial Complex I Inhibitors Expose a Vulnerability for Selective Killing of Pten-Null Cells. Cell Rep, 23 (1). pp. 58-67. ISSN 2211-1247 (Electronic)

Govek, Eve-Ellen, Wu, Zhuhao, Acehan, Devrim, Molina, Henrik, Rivera, Keith, Zhu, Xiaodong, Fang, Yin, Tessier-Lavigne, Marc, Hatten, Mary Elizabeth (March 2018) Cdc42 Regulates Neuronal Polarity during Cerebellar Axon Formation and Glial-Guided Migration. iScience, 1. pp. 35-48. ISSN 2589-0042

Lee, Y. C., Baath, J. A., Bastle, R. M., Bhattacharjee, S., Cantoria, M. J., Dornan, M., Gamero-Estevez, E., Ford, L., Halova, L., Kernan, J., Kurten, C., Li, S., Martinez, J., Sachan, N., Sarr, M., Shan, X., Subramanian, N., Rivera, K., Pappin, D., Lin, S. H. (January 2018) Impact of Detergents on Membrane Protein Complex Isolation. J Proteome Res, 17 (1). pp. 348-358. ISSN 1535-3893

Wilson, J., Turna, N. S., Banks, R., Pappin, D. J. C., Zougman, A. (August 2017) Clinical applications of universal S-Trap sample processing. Molecular & Cellular Proteomics, 16 (8; Sup). S56-S56. ISSN 1535-9476

Pattison, S. H., Gibson, D. S., Johnston, E., Peacock, S., Rivera, K., Tunney, M. M., Pappin, D. J., Elborn, J. S. (July 2017) Proteomic profile of cystic fibrosis sputum cells in adults chronically infected with Pseudomonas aeruginosa. Eur Respir J, 50 (1). ISSN 0903-1936

Chio, I. I. C., Jafarnejad, S. M., Ponz-Sarvise, M., Park, Y., Rivera, K., Palm, W., Ohlund, D., Hammell, M., Crawford, H., Schmidt, E., Thompson, C., Pappin, D., Sonenberg, N., Tuveson, D. (March 2017) NRF2 promotes tumor maintenance by modulating mRNA translation in pancreatic cancer. Cancer Research, 77 (Supple). ISSN 0008-54721538-7445

Chavez, J. D., Eng, J. K., Schweppe, D. K., Cilia, M., Rivera, K., Zhong, X., Wu, X., Allen, T., Khurgel, M., Kumar, A., Lampropoulos, A., Larsson, M., Maity, S., Morozov, Y., Pathmasiri, W., Perez-Neut, M., Pineyro-Ruiz, C., Polina, E., Post, S., Rider, M., Tokmina-Roszyk, D., Tyson, K., Vieira Parrine Sant'Ana, D., Bruce, J. E. (December 2016) A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry. PLoS One, 11 (12). e0167547. ISSN 1932-6203

Chio, Iok In Christine, Jafarnejad, Seyed Mehdi, Ponz-Sarvise, Mariano, Park, Youngkyu, Rivera, Keith, Palm, Wilhelm, Wilson, John, Sangar, Vineet, Hao, Yuan, Öhlund, Daniel, Wright, Kevin, Filippini, Dea, Lee, Eun Jung, Da Silva, Brandon, Schoepfer, Christina, Wilkinson, John Erby, Buscaglia, Jonathan M, DeNicola, Gina M, Tiriac, Herve, Hammell, Molly, Crawford, Howard C, Schmidt, Edward E, Thompson, Craig B, Pappin, Darryl J, Sonenberg, Nahum, Tuveson, David A (August 2016) NRF2 Promotes Tumor Maintenance by Modulating mRNA Translation in Pancreatic Cancer. Cell, 166 (4). pp. 963-976. ISSN 0092-8674

Herrera, V. L., Steffen, M., Moran, A. M., Tan, G. A., Pasion, K. A., Rivera, K., Pappin, D. J., Ruiz-Opazo, N. (June 2016) Confirmation of translatability and functionality certifies the dual endothelin1/VEGFsp receptor (DEspR) protein. BMC Mol Biol, 17 (1). p. 15. ISSN 1471-2199 (Electronic)1471-2199 (Linking)

Ho, J. M., Reynolds, N. M., Rivera, K., Connolly, M., Guo, L. T., Ling, J. Q., Pappin, D. J., Church, G. M., Soll, D. (February 2016) Efficient Reassignment of a Frequent Serine Codon in Wild-Type Escherichia coli. ACS Synthetic Biology, 5 (2). pp. 163-171. ISSN 2161-5063

Shen, Chen, Ipsaro, Jonathan J, Shi, Junwei, Milazzo, Joseph P, Wang, Eric, Roe, Jae-Seok, Suzuki, Yutaka, Pappin, Darryl J, Joshua-Tor, Leemor, Vakoc, Christopher R (December 2015) NSD3-Short Is an Adaptor Protein that Couples BRD4 to the CHD8 Chromatin Remodeler. Molecular Cell, 60 (6). pp. 847-859. ISSN 1097-2765

Yun, J., Mullarky, E., Lu, C., Bosch, K. N., Kavalier, A., Rivera, K., Roper, J., Chio, II, Giannopoulou, E. G., Rago, C., Muley, A., Asara, J. M., Paik, J., Elemento, O., Chen, Z., Pappin, D. J., Dow, L. E., Papadopoulos, N., Gross, S. S., Cantley, L. C. (December 2015) Vitamin C selectively kills KRAS and BRAF mutant colorectal cancer cells by targeting GAPDH. Science, 350 (6266). pp. 1391-1396. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Roe, Jae-Seok, Mercan, Fatih, Rivera, Keith, Pappin, Darryl J, Vakoc, Christopher R (June 2015) BET Bromodomain Inhibition Suppresses the Function of Hematopoietic Transcription Factors in Acute Myeloid Leukemia. Molecular Cell, 58 (6). pp. 1028-1036. ISSN 1097-2765

Akerman, M., Fregoso, O. I., Das, S., Ruse, C., Jensen, M. A., Pappin, D. J., Zhang, M. Q., Krainer, A. R. (June 2015) Differential connectivity of splicing activators and repressors to the human spliceosome. Genome Biol, 16 (1). p. 119. ISSN 1465-6914 (Electronic)1465-6906 (Linking)

Naguib, Adam, Bencze, Gyula, Cho, Hyejin, Zheng, Wu, Tocilj, Ante, Elkayam, Elad, Faehnle, Christopher R, Jaber, Nadia, Pratt, Christopher P, Chen, Muhan, Zong, Wei-Xing, Marks, Michael S, Joshua-Tor, Leemor, Pappin, Darryl J, Trotman, Lloyd C (April 2015) PTEN Functions by Recruitment to Cytoplasmic Vesicles. Molecular Cell, 58 (2). pp. 255-268. ISSN 1097-2765

Fan, G., Wrzeszczynski, K. O., Fu, C., Su, G., Pappin, D. J., Lucito, R., Tonks, N. K. (February 2015) A quantitative proteomics-based signature of platinum sensitivity in ovarian cancer cell lines. Biochem J, 465 (3). pp. 433-42. ISSN 0264-6021

Boj, Sylvia F, Hwang, Chang-Il, Baker, Lindsey A, Chio, Iok In Christine, Engle, Dannielle D, Corbo, Vincenzo, Jager, Myrthe, Ponz-Sarvise, Mariano, Tiriac, Hervé, Spector, Mona S, Gracanin, Ana, Oni, Tobiloba, Yu, Kenneth H, van Boxtel, Ruben, Huch, Meritxell, Rivera, Keith D, Wilson, John P, Feigin, Michael E, Öhlund, Daniel, Handly-Santana, Abram, Ardito-Abraham, Christine M, Ludwig, Michael, Elyada, Ela, Alagesan, Brinda, Biffi, Giulia, Yordanov, Georgi N, Delcuze, Bethany, Creighton, Brianna, Wright, Kevin, Park, Youngkyu, Morsink, Folkert H M., Molenaar, I.  Quintus, Borel Rinkes, Inne H, Cuppen, Edwin, Hao, Yuan, Jin, Ying, Nijman, Isaac J, Iacobuzio-Donahue, Christine, Leach, Steven D, Pappin, Darryl J, Hammell, Molly, Klimstra, David S, Basturk, Olca, Hruban, Ralph H, Offerhaus, George Johan, Vries, Robert G J., Clevers, Hans, Tuveson, David A (January 2015) Organoid Models of Human and Mouse Ductal Pancreatic Cancer. Cell, 160 (1-2). pp. 324-338. ISSN 0092-8674

Naguib, A., Bencze, G., Engle, D. D., Chio, II, Herzka, T., Watrud, K., Bencze, S., Tuveson, D. A., Pappin, D. J., Trotman, L. C. (December 2014) P53 Mutations Change Phosphatidylinositol Acyl Chain Composition. Cell Reports, 10 (1). pp. 8-19. ISSN 2211-1247

Yang, M., Haase, A. D., Huang, F. K., Coulis, G., Rivera, K. D., Dickinson, B. C., Chang, C. J., Pappin, D. J., Neubert, T. A., Hannon, G. J., Boivin, B., Tonks, N. K. (August 2014) Dephosphorylation of Tyrosine 393 in Argonaute 2 by Protein Tyrosine Phosphatase 1B Regulates Gene Silencing in Oncogenic RAS-Induced Senescence. Mol Cell, 55 (5). pp. 782-790. ISSN 1097-2765

Krishnan, N., Koveal, D., Miller, D. H., Xue, B., Akshinthala, S. D., Kragelj, J., Jensen, M. R., Gauss, C. M., Page, R., Blackledge, M., Muthuswamy, S. K., Peti, W., Tonks, N. K. (May 2014) Targeting the disordered C terminus of PTP1B with an allosteric inhibitor. Nature Chemical Biology, 10 (7). pp. 558-566. ISSN 15524450

Ruse, C. I., Peacock, S., Ghiban, C., Rivera, K., Pappin, D. J., Leopold, P. (June 2013) A tool to evaluate correspondence between extraction ion chromatographic peaks and peptide-spectrum matches in shotgun proteomics experiments. Proteomics, 13 (16). pp. 2386-2397. ISSN 1615-9861 (Electronic)1615-9853 (Linking)

Schuck, S., Ruse, C., Stenlund, A. (May 2013) CK2 phosphorylation inactivates DNA binding by the papillomavirus E1 and E2 proteins. Journal of Virology, 87 (13). pp. 7668-7679. ISSN 0022-538X

Wrzeszczynski, K. O., Fan, G. F., Fu, C. X., Pappin, D. J., Lucito, R., Tonks, N. K. (April 2013) Proteomic identification of carboplatin resistance in ovarian cancer cells. Cancer Research, 73 (8 Supp). p. 2502. ISSN 0008-5472

Naguib, A., Bencze, G., Faehnle, C. R., Schalch, T., Lazar, Z., Ruse, C. I., Joshua-Tor, L., Pappin, D. J., Trotman, L. C. (April 2013) Upstream activation of PTEN. Cancer Research, 73 (8 (Sup). p. 5156. ISSN 0008-5472

Miething, C., Scuoppo, C., Lindqvist, L., Reyes, J., Ruse, C., Appelmann, I., Yoon, S., Krasnitz, A., Teruya-Feldstein, J., Pappin, D., Pelletier, J., Lowe, S. (October 2012) An oncogenome-based RNAi screen identifies a tumour suppressor network in B-cell lymphoma relying on the polyamine-hypusine axis. Onkologie, 35. p. 104. ISSN 0378-584X

Scuoppo, C., Miething, C., Lindqvist, L., Reyes, J., Ruse, C., Appelmann, I., Yoon, S., Krasnitz, A., Teruya-Feldstein, J., Pappin, D., Pelletier, J., Lowe, S. W. (July 2012) A tumour suppressor network relying on the polyamine-hypusine axis. Nature, 487 (7406). pp. 244-8. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

Kuhn, E., Whiteaker, J. R., Mani, D. R., Jackson, A. M., Zhao, L., Pope, M. E., Smith, D., Rivera, K. D., Anderson, N. L., Skates, S. J., Pearson, T. W., Paulovich, A. G., Carr, S. A. (June 2012) Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma. Molecular & Cellular Proteomics, 11 (6). ISSN 1535-9476

Khan, Z., Amini, S., Bloom, J. S., Ruse, C., Caudy, A. A., Kruglyak, L., Singh, M., Perlman, D. H., Tavazoie, S. (2011) Accurate proteome-wide protein quantification from high-resolution N-15 mass spectra. Genome Biology, 12 (12). ISSN 1474-7596

Haase, A. D., Fenoglio, S., Muerdter, F., Guzzardo, P. M., Czech, B., Pappin, D. J., Chen, C., Gordon, A., Hannon, G. J. (October 2010) Probing the initiation and effector phases of the somatic piRNA pathway in Drosophila. Genes and Development, 24 (22). pp. 2499-2504. ISSN 08909369 (ISSN)

Wu, C., Liu, T., Chen, W., Oka, S., Fu, C. X., Jain, M. R., Parrott, A. M., Baykal, A. T., Sadoshima, J., Li, H. (October 2010) Redox Regulatory Mechanism of Transnitrosylation by Thioredoxin. Molecular & Cellular Proteomics, 9 (10). pp. 2262-2275. ISSN 1535-9476

Kirchner, M., Renard, B. Y., Kothe, U., Pappin, D. J., Hamprecht, F. A., Steen, H., Steen, J. A. J. (January 2010) Computational protein profile similarity screening for quantitative mass spectrometry experiments. Bioinformatics, 26 (1). pp. 77-83. ISSN 1367-4803

Boersema, P. J., Taouatas, N., Altelaar, A. F. M., Gouw, J. W., Ross, P. L., Pappin, D. J., Heck, A. J. R., Mohammed, S. (April 2009) Straightforward and de Novo Peptide Sequencing by MALDI-MS/MS Using a Lys-N Metalloendopeptidase. Molecular & Cellular Proteomics, 8 (4). pp. 650-660. ISSN 1535-9476

Han, H., Pappin, D. J., Ross, P. L., McLuckey, S. A. (September 2008) Electron transfer dissociation of iTRAQ labeled peptide ions. J Proteome Res, 7 (9). pp. 3643-8. ISSN 1535-3893 (Print)1535-3893 (Linking)

Choe, L., D'Ascenzo, M., Relkin, N. R., Pappin, D., Ross, P., Williamson, B., Guertin, S., Pribil, P., Lee, K. H. (October 2007) 8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease. Proteomics, 7 (20). pp. 3651-60. ISSN 1615-9853 (Print)1615-9853 (Linking)

Henderson, M. J., Munoz, M. A., Saunders, D. N., Clancy, J. L., Russell, A. J., Williams, B., Pappin, D., Khanna, K. K., Jackson, S. P., Sutherland, R. L., Watts, C. K. (December 2006) EDD mediates DNA damage-induced activation of CHK2. J Biol Chem, 281 (52). pp. 39990-40000. ISSN 0021-9258 (Print)0021-9258 (Linking)

Zhang, Y., Wolf-Yadlin, A., Ross, P. L., Pappin, D. J., Rush, J., Lauffenburger, D. A., White, F. M. (September 2005) Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Mol Cell Proteomics, 4 (9). pp. 1240-50. ISSN 1535-9476 (Print)1535-9476 (Linking)

Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., Pappin, D. J. (December 2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics, 3 (12). pp. 1154-69. ISSN 1535-9476 (Print)1535-9476 (Linking)

Smirnov, I. P., Zhu, X., Taylor, T., Huang, Y., Ross, P., Papayanopoulos, I. A., Martin, S. A., Pappin, D. J. (May 2004) Suppression of alpha-cyano-4-hydroxycinnamic acid matrix clusters and reduction of chemical noise in MALDI-TOF mass spectrometry. Anal Chem, 76 (10). pp. 2958-65. ISSN 0003-2700 (Print)0003-2700 (Linking)

Wu, Y., Egerton, G., Pappin, D. J., Harrison, R. A., Wilkinson, M. C., Underwood, A., Bianco, A. E. (April 2004) The Secreted Larval Acidic Proteins (SLAPs) of Onchocerca spp. are encoded by orthologues of the alt gene family of Brugia malayi and have host protective potential. Mol Biochem Parasitol, 134 (2). pp. 213-24. ISSN 0166-6851 (Print)0166-6851 (Linking)

Goldberg, M., Stucki, M., Falck, J., D'Amours, D., Rahman, D., Pappin, D., Bartek, J., Jackson, S. P. (February 2003) MDC1 is required for the intra-S-phase DNA damage checkpoint. Nature, 421 (6926). pp. 952-6. ISSN 0028-0836 (Print)0028-0836 (Linking)

Diao, A., Rahman, D., Pappin, D. J., Lucocq, J., Lowe, M. (January 2003) The coiled-coil membrane protein golgin-84 is a novel rab effector required for Golgi ribbon formation. Journal of Cell Biology, 160 (2). pp. 201-12. ISSN 0021-9525

Unwin, R. D., Harnden, P., Pappin, D., Rahman, D., Whelan, P., Craven, R. A., Selby, P. J., Banks, R. E. (January 2003) Serological and proteomic evaluation of antibody responses in the identification of tumor antigens in renal cell carcinoma. Proteomics, 3 (1). pp. 45-55. ISSN 1615-9853 (Print)1615-9853 (Linking)

Pappin, D. J. (2003) Peptide mass fingerprinting using MALDI-TOF mass spectrometry. Methods in Molecular Biology, 211. pp. 211-9. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Uchiyama, K., Jokitalo, E., Kano, F., Murata, M., Zhang, X., Canas, B., Newman, R., Rabouille, C., Pappin, D., Freemont, P., Kondo, H. (December 2002) VCIP135, a novel essential factor for p97/p47-mediated membrane fusion, is required for Golgi and ER assembly in vivo. J Cell Biol, 159 (5). pp. 855-66. ISSN 0021-9525 (Print)0021-9525 (Linking)

Zegerman, P., Canas, B., Pappin, D., Kouzarides, T. (April 2002) Histone H3 lysine 4 methylation disrupts binding of nucleosome remodeling and deacetylase (NuRD) repressor complex. J Biol Chem, 277 (14). pp. 11621-4. ISSN 0021-9258 (Print)0021-9258 (Linking)

Ragno, S., Romano, M., Howell, S., Pappin, D. J., Jenner, P. J., Colston, M. J. (September 2001) Changes in gene expression in macrophages infected with Mycobacterium tuberculosis: a combined transcriptomic and proteomic approach. Immunology, 104 (1). pp. 99-108. ISSN 0019-2805 (Print)0019-2805 (Linking)

Corrigall, V. M., Bodman-Smith, M. D., Fife, M. S., Canas, B., Myers, L. K., Wooley, P., Soh, C., Staines, N. A., Pappin, D. J., Berlo, S. E., van Eden, W., van Der Zee, R., Lanchbury, J. S., Panayi, G. S. (February 2001) The human endoplasmic reticulum molecular chaperone BiP is an autoantigen for rheumatoid arthritis and prevents the induction of experimental arthritis. J Immunol, 166 (3). pp. 1492-8. ISSN 0022-1767 (Print)0022-1767 (Linking)

Banks, R. E., Dunn, M. J., Hochstrasser, D. F., Sanchez, J. C., Blackstock, W., Pappin, D. J., Selby, P. J. (November 2000) Proteomics: new perspectives, new biomedical opportunities. Lancet, 356 (9243). pp. 1749-56. ISSN 0140-6736 (Print)0140-6736 (Linking)

Perraudeau, M., Taylor, P. R., Stauss, H. J., Lindstedt, R., Bygrave, A. E., Pappin, D. J., Ellmerich, S., Whitten, A., Rahman, D., Canas, B., Walport, M. J., Botto, M., Altmann, D. M. (October 2000) Altered major histocompatibility complex class II peptide loading in H2-O-deficient mice. Eur J Immunol, 30 (10). pp. 2871-80. ISSN 0014-2980 (Print)0014-2980 (Linking)

Hanakahi, L. A., Bartlet-Jones, M., Chappell, C., Pappin, D., West, S. C. (September 2000) Binding of inositol phosphate to DNA-PK and stimulation of double-strand break repair. Cell, 102 (6). pp. 721-9. ISSN 0092-8674 (Print)0092-8674 (Linking)

Meyer, H. H., Shorter, J. G., Seemann, J., Pappin, D., Warren, G. (May 2000) A complex of mammalian ufd1 and npl4 links the AAA-ATPase, p97, to ubiquitin and nuclear transport pathways. EMBO J, 19 (10). pp. 2181-92. ISSN 0261-4189 (Print)0261-4189 (Linking)

Navaratnam, D. S., Fernando, F. S., Priddle, J. D., Giles, K., Clegg, S. M., Pappin, D. J., Craig, I., Smith, A. D. (May 2000) Hydrophobic protein that copurifies with human brain acetylcholinesterase: amino acid sequence, genomic organization, and chromosomal localization. J Neurochem, 74 (5). pp. 2146-53. ISSN 0022-3042 (Print)0022-3042 (Linking)

van Ham, M., van Lith, M., Lillemeier, B., Tjin, E., Gruneberg, U., Rahman, D., Pastoors, L., van Meijgaarden, K., Roucard, C., Trowsdale, J., Ottenhoff, T., Pappin, D., Neefjes, J. (April 2000) Modulation of the major histocompatibility complex class II-associated peptide repertoire by human histocompatibility leukocyte antigen (HLA)-DO. J Exp Med, 191 (7). pp. 1127-36. ISSN 0022-1007 (Print)0022-1007 (Linking)

Reeves, E. P., Dekker, L. V., Forbes, L. V., Wientjes, F. B., Grogan, A., Pappin, D. J., Segal, A. W. (December 1999) Direct interaction between p47phox and protein kinase C: evidence for targeting of protein kinase C by p47phox in neutrophils. Biochemical Journal, 344 Pt. pp. 859-66. ISSN 0264-6021 (Print)0264-6021 (Linking)

Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S. (December 1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20 (18). pp. 3551-67. ISSN 0173-0835 (Print)0173-0835 (Linking)

Young, J. D., Lawrence, A. J., MacLean, A. G., Leung, B. P., McInnes, I. B., Canas, B., Pappin, D. J., Stevenson, R. D. (December 1999) Thymosin beta 4 sulfoxide is an anti-inflammatory agent generated by monocytes in the presence of glucocorticoids. Nature Medicine, 5 (12). pp. 1424-7. ISSN 1078-8956 (Print)1078-8956 (Linking)

Karimi-Busheri, F., Daly, G., Robins, P., Canas, B., Pappin, D. J., Sgouros, J., Miller, G. G., Fakhrai, H., Davis, E. M., Le Beau, M. M., Weinfeld, M. (August 1999) Molecular characterization of a human DNA kinase. Journal of Biological Chemistry, 274 (34). pp. 24187-94. ISSN 0021-9258 (Print)0021-9258 (Linking)

Hoss, M., Robins, P., Naven, T. J., Pappin, D. J., Sgouros, J., Lindahl, T. (July 1999) A human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein. EMBO Journal, 18 (13). pp. 3868-75. ISSN 0261-4189 (Print)0261-4189 (Linking)

Banks, R. E., Dunn, M. J., Forbes, M. A., Stanley, A., Pappin, D., Naven, T., Gough, M., Harnden, P., Selby, P. J. (April 1999) The potential use of laser capture microdissection to selectively obtain distinct populations of cells for proteomic analysis--preliminary findings. Electrophoresis, 20 (4-5). pp. 689-700. ISSN 0173-0835 (Print)0173-0835 (Linking)

Hanley, S. Z., Pappin, D. J., Rahman, D., White, A. J., Elborough, K. M., Slabas, A. R. (March 1999) Re-evaluation of the primary structure of Ralstonia eutropha phasin and implications for polyhydroxyalkanoic acid granule binding. FEBS Letters, 447 (1). pp. 99-105. ISSN 0014-5793 (Print)0014-5793 (Linking)

Tugal, T., Zou-Yang, X. H., Gavin, K., Pappin, D., Canas, B., Kobayashi, R., Hunt, T., Stillman, B. (December 1998) The Orc4p and Orc5p Subunits of the Xenopus and Human Origin Recognition Complex Are Related to Orc1p and Cdc6p. Journal of Biological Chemistry, 273 (49). pp. 32421-32429. ISSN 0021-9258

Lowe, M., Rabouille, C., Nakamura, N., Watson, R., Jackman, M., Jamsa, E., Rahman, D., Pappin, D. J., Warren, G. (September 1998) Cdc2 kinase directly phosphorylates the cis-Golgi matrix protein GM130 and is required for Golgi fragmentation in mitosis. Cell, 94 (6). pp. 783-93. ISSN 0092-8674 (Print)0092-8674 (Linking)

Mason, G. G., Murray, R. Z., Pappin, D., Rivett, A. J. (July 1998) Phosphorylation of ATPase subunits of the 26S proteasome. FEBS Letters, 430 (3). pp. 269-74. ISSN 0014-5793 (Print)0014-5793 (Linking)

Banks, R. E., Forbes, M. A., Searles, J., Pappin, D., Canas, B., Rahman, D., Kaufmann, S., Walters, C. E., Jackson, A., Eves, P., Linton, G., Keen, J., Walker, J. J., Selby, P. J. (April 1998) Evidence for the existence of a novel pregnancy-associated soluble variant of the vascular endothelial growth factor receptor, Flt-1. Molecular Human Reproduction, 4 (4). pp. 377-86. ISSN 1360-9947 (Print)1360-9947 (Linking)

van Ham, S. M., Tjin, E. P., Lillemeier, B. F., Gruneberg, U., van Meijgaarden, K. E., Pastoors, L., Verwoerd, D., Tulp, A., Canas, B., Rahman, D., Ottenhoff, T. H., Pappin, D. J., Trowsdale, J., Neefjes, J. (December 1997) HLA-DO is a negative modulator of HLA-DM-mediated MHC class II peptide loading. Curr Biol, 7 (12). pp. 950-7. ISSN 0960-9822 (Print)0960-9822 (Linking)

Cotterill, L. A., Stauss, H. J., Millrain, M. M., Pappin, D. J., Rahman, D., Canas, B., Chandler, P., Stackpoole, A., Simpson, E., Robinson, P. J., Dyson, P. J. (September 1997) Qa-1 interaction and T cell recognition of the Qa-1 determinant modifier peptide. European Journal of Immunology, 27 (9). pp. 2123-32. ISSN 1521-4141 (Electronic)0014-2980 (Linking)

Kondo, H., Rabouille, C., Newman, R., Levine, T. P., Pappin, D., Freemont, P., Warren, G. (July 1997) p47 is a cofactor for p97-mediated membrane fusion. Nature, 388 (6637). pp. 75-8. ISSN 0028-0836 (Print)0028-0836 (Linking)

Rodriguez-Viciana, P., Warne, P. H., Khwaja, A., Marte, B. M., Pappin, D., Das, P., Waterfield, M. D., Ridley, A., Downward, J. (May 1997) Role of phosphoinositide 3-OH kinase in cell transformation and control of the actin cytoskeleton by Ras. Cell, 89 (3). pp. 457-67. ISSN 0092-8674 (Print)0092-8674 (Linking)

Gut, I. G., Jeffery, W. A., Pappin, D. J. C., Beck, S. (1997) Analysis of DNA by 'charge tagging' and matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry, 11 (1). pp. 43-50. ISSN 09514198 (ISSN)

Pappin, D. J. (1997) Peptide mass fingerprinting using MALDI-TOF mass spectrometry. Methods in molecular biology (Clifton, N.J.), 64. pp. 165-173. ISSN 10643745 (ISSN)

Spengler, B., Luetzenkirchen, F., Metzger, S., Chaurand, P., Kaufmann, R., Jeffery, W., Bartlet-Jones, M., Pappin, D. J. C. (1997) Peptide sequencing of charged derivatives by postsource decay MALDI mass spectrometry. International Journal of Mass Spectrometry and Ion Processes, 169-17. pp. 127-140. ISSN 01681176 (ISSN)

Coffer, A., Cavailles, V., Knowles, P., Pappin, D. (August 1996) Biochemical characterization and novel isolation of pure estrogen receptor hormone-binding domain. J Steroid Biochem Mol Biol, 58 (5-6). pp. 467-77. ISSN 0960-0760 (Print)0960-0760 (Linking)

Blackford, J., Reid, H. W., Pappin, D. J., Bowers, F. S., Wilkinson, J. M. (March 1996) A monoclonal antibody, 3/22, to rabbit CD11c which induces homotypic T cell aggregation: evidence that ICAM-1 is a ligand for CD11c/CD18. Eur J Immunol, 26 (3). pp. 525-31. ISSN 0014-2980 (Print)0014-2980 (Linking)

Salmeron, A., Ahmad, T. B., Carlile, G. W., Pappin, D., Narsimhan, R. P., Ley, S. C. (February 1996) Activation of MEK-1 and SEK-1 by Tpl-2 proto-oncoprotein, a novel MAP kinase kinase kinase. Embo Journal, 15 (4). pp. 817-26. ISSN 0261-4189

Otto, W. R., Rao, J., Cox, H. M., Kotzian, E., Lee, C. Y., Goodlad, R. A., Lane, A., Gorman, M., Freemont, P. A., Hansen, H. F., Pappin, D., Wright, N. A. (January 1996) Effects of pancreatic spasmolytic Polypeptide (PSP) on epithelial cell function. European Journal of Biochemistry, 235 (1-2). pp. 64-72. ISSN 0014-2956 (Print)0014-2956 (Linking)

Palmer, R. H., Schonwasser, D. C., Rahman, D., Pappin, D. J., Herget, T., Parker, P. J. (January 1996) PRK1 phosphorylates MARCKS at the PKC sites: serine 152, serine 156 and serine 163. Febs Letters, 378 (3). pp. 281-5. ISSN 0014-5793

Lahooti, H., White, R., Hoare, S. A., Rahman, D., Pappin, D. J., Parker, M. G. (December 1995) Identification of phosphorylation sites in the mouse oestrogen receptor. J Steroid Biochem Mol Biol, 55 (3-4). pp. 305-13. ISSN 0960-0760 (Print)0960-0760 (Linking)

Herget, T., Oehrlein, S. A., Pappin, D. J., Rozengurt, E., Parker, P. J. (October 1995) The myristoylated alanine-rich C-kinase substrate (MARCKS) is sequentially phosphorylated by conventional, novel and atypical isotypes of protein kinase C. Eur J Biochem, 233 (2). pp. 448-57. ISSN 0014-2956 (Print)0014-2956 (Linking)

Bishop, L. A., Rahman, D., Pappin, D. J., Watt, F. M. (August 1995) Identification of an 80kD protein associated with the alpha 3 beta 1 integrin as a proteolytic fragment of the alpha 3 subunit: studies with human keratinocytes. Cell Adhes Commun, 3 (3). pp. 243-55. ISSN 1061-5385 (Print)1023-7046 (Linking)

Wei, Y. F., Robins, P., Carter, K., Caldecott, K., Pappin, D. J., Yu, G. L., Wang, R. P., Shell, B. K., Nash, R. A., Schar, P. (June 1995) Molecular cloning and expression of human cDNAs encoding a novel DNA ligase IV and DNA ligase III, an enzyme active in DNA repair and recombination. Mol Cell Biol, 15 (6). pp. 3206-16. ISSN 0270-7306 (Print)0270-7306 (Linking)

Sutton, C. W., Pemberton, K. S., Cottrell, J. S., Corbett, J. M., Wheeler, C. H., Dunn, M. J., Pappin, D. J. (1995) Identification of myocardial proteins from two-dimensional gels by peptide mass fingerprinting. Electrophoresis, 16 (3). pp. 308-316. ISSN 01730835 (ISSN)

Robins, P., Pappin, D. J., Wood, R. D., Lindahl, T. (November 1994) Structural and functional homology between mammalian DNase IV and the 5'-nuclease domain of Escherichia coli DNA polymerase I. J Biol Chem, 269 (46). pp. 28535-8. ISSN 0021-9258 (Print)0021-9258 (Linking)

Kiefer, P., Acland, P., Pappin, D., Peters, G., Dickson, C. (September 1994) Competition between nuclear localization and secretory signals determines the subcellular fate of a single CUG-initiated form of FGF3. EMBO J, 13 (17). pp. 4126-36. ISSN 0261-4189 (Print)0261-4189 (Linking)

Bartlet-Jones, M., Jeffery, W. A., Hansen, H. F., Pappin, D. J. (September 1994) Peptide ladder sequencing by mass spectrometry using a novel, volatile degradation reagent. Rapid Commun Mass Spectrom, 8 (9). pp. 737-42. ISSN 0951-4198 (Print)0951-4198 (Linking)

Ley, S. C., Verbi, W., Pappin, D. J., Druker, B., Davies, A. A., Crumpton, M. J. (January 1994) Tyrosine phosphorylation of alpha tubulin in human T lymphocytes. Eur J Immunol, 24 (1). pp. 99-106. ISSN 0014-2980 (Print)0014-2980 (Linking)

Lovering, R., Hanson, I. M., Borden, K. L., Martin, S., O'Reilly, N. J., Evan, G. I., Rahman, D., Pappin, D. J., Trowsdale, J., Freemont, P. S. (March 1993) Identification and preliminary characterization of a protein motif related to the zinc finger. Proc Natl Acad Sci U S A, 90 (6). pp. 2112-6. ISSN 0027-8424 (Print)0027-8424 (Linking)

Beck, S., Hanson, I., Kelly, A., Pappin, D. J., Trowsdale, J. (1992) A homologue of the Drosophila female sterile homeotic (fsh) gene in the class II region of the human MHC. DNA Seq, 2 (4). pp. 203-10. ISSN 1042-5179 (Print)1026-7913 (Linking)

Coffer, A., Fellows, J., Young, S., Pappin, D., Rahman, D. (August 1991) Purification and characterization of biologically active scatter factor from ras-transformed NIH 3T3 conditioned medium. Biochem J, 278 ( . pp. 35-41. ISSN 0264-6021 (Print)0264-6021 (Linking)

Bodwell, J. E., Orti, E., Coull, J. M., Pappin, D. J., Smith, L. I., Swift, F. (April 1991) Identification of phosphorylated sites in the mouse glucocorticoid receptor. J Biol Chem, 266 (12). pp. 7549-55. ISSN 0021-9258 (Print)0021-9258 (Linking)

Coull, J. M., Pappin, D. J., Mark, J., Aebersold, R., Koster, H. (April 1991) Functionalized membrane supports for covalent protein microsequence analysis. Anal Biochem, 194 (1). pp. 110-20. ISSN 0003-2697 (Print)0003-2697 (Linking)

Robson, C. N., Milne, A. M., Pappin, D. J., Hickson, I. D. (March 1991) Isolation of cDNA clones encoding an enzyme from bovine cells that repairs oxidative DNA damage in vitro: homology with bacterial repair enzymes. Nucleic Acids Res, 19 (5). pp. 1087-92. ISSN 0305-1048 (Print)0305-1048 (Linking)

Pappin, D. J., Coull, J. M., Koster, H. (May 1990) Solid-phase sequence analysis of proteins electroblotted or spotted onto polyvinylidene difluoride membranes. Anal Biochem, 187 (1). pp. 10-9. ISSN 0003-2697 (Print)0003-2697 (Linking)

Coull, J. M., Pappin, D. J. (1990) A rapid fluorescent staining procedure for proteins electroblotted onto PVDF membranes. Journal of Protein Chemistry, 9. p. 259.

Wales, R., Newman, B. J., Rose, S. A., Pappin, D., Gray, J. C. (November 1989) Characterization of cDNA clones encoding the extrinsic 23 kDa polypeptide of the oxygen-evolving complex of photosystem II in pea. Plant Mol Biol, 13 (5). pp. 573-82. ISSN 0167-4412 (Print)0167-4412 (Linking)

Koh-Luar, S. I., Parish, J. H., Bleasby, A. J., Pappin, D. J. C., Ainley, K., Johansen, F. E., McPherson, M. J., Radfors, A. (1989) Exported proteins of Neurospora crassa: 1-glucoamylase. Enzyme and Microbial Technology, 11 (10). pp. 692-695. ISSN 01410229 (ISSN)

Wallace, T. P., Stewart, A. C., Pappin, D., Howe, C. J. (1989) Gene sequence for the 9 kDa component of Photosystem II from the cyanobacterium Phormidium laminosum indicates similarities between cyanobacterial and other leader sequences. Molecular & General Genetics, 216 (2-3). pp. 334-339. ISSN 00268925 (ISSN)

Wales, R., Newman, B. J., Pappin, D., Gray, J. C. (1989) The extrinsic 33 kDa polypeptide of the oxygen-evolving complex of photosystem II is a putative calcium-binding protein and is encoded by a multi-gene family in pea. Plant Molecular Biology, 12 (4). pp. 439-451. ISSN 01674412 (ISSN)

Shewry, P. R., Tatham, A. S., Pappin, D. J., Keen, J. (November 1988) N-terminal amino-acid sequences show that D-hordein of barley and high molecular-weight (HMW) secalins of rye are homologous with HMW glutenin subunits of wheat. Cereal Chemistry, 65 (6). pp. 510-511. ISSN 0009-0352

March, J. F., Pappin, D. J., Casey, R. (March 1988) Isolation and characterization of a minor legumin and its constituent polypeptides from Pisum sativum (pea). Biochem J, 250 (3). pp. 911-5. ISSN 0264-6021 (Print)0264-6021 (Linking)

Dunn, P. P., Packman, L. C., Pappin, D. J., Gray, J. C. (February 1988) N-terminal amino acid sequence analysis of the subunits of pea photosystem I. Febs Letters, 228 (1). pp. 157-61. ISSN 0014-5793

Bowles, D. J., Pappin, D. J. (February 1988) Traffic and assembly of concanavalin A. Trends Biochem Sci, 13 (2). pp. 60-4. ISSN 0968-0004 (Print)0968-0004 (Linking)

Keen, Jeffrey N., Pappin, Darryl J. C., Evans, Leonard V. (1988) Amino Acid Sequence Analysis Of The Small Subunit Of Ribulose Bisphosphate Carboxylase From Fucus (Phaeophyceae)1. Journal of Phycology, 24 (3). pp. 324-327. ISSN 1529-8817

Findlay, J. B. C., Pappin, D. J., Eliopoulos, E. E. (1988) The primary structure, chemistry and molecular modelling of rhodopsin. Progress in Retinal Research, 7. pp. 63-87. ISSN 02784327 (ISSN)

Hooper, N. M., Keen, J., Pappin, D. J., Turner, A. J. (October 1987) Pig kidney angiotensin converting enzyme. Purification and characterization of amphipathic and hydrophilic forms of the enzyme establishes C-terminal anchorage to the plasma membrane. Biochem J, 247 (1). pp. 85-93. ISSN 0264-6021 (Print)0264-6021 (Linking)

Shewry, P. R., Parmar, S., Pappin, D. J. (April 1987) Characterization and genetic control of the prolamins of Haynaldia villosa: relationship to cultivated species of the Triticeae (rye, wheat, and barley). Biochem Genet, 25 (3-4). pp. 309-25. ISSN 0006-2928 (Print)0006-2928 (Linking)

Cavaggioni, A., Sorbi, R. T., Keen, J. N., Pappin, D. J., Findlay, J. B. (February 1987) Homology between the pyrazine-binding protein from nasal mucosa and major urinary proteins. FEBS Letters, 212 (2). pp. 225-8. ISSN 00145793 (ISSN)

Pierpoint, W. S., Tatham, A. S., Pappin, D. J. C. (1987) Identification of the virus-induced protein of tobacco leaves that resembles the sweet-protein thaumatin. Physiological and Molecular Plant Pathology, 31 (2). pp. 291-298. ISSN 0885-5765

Fulcher, I. S., Pappin, D. J., Kenny, A. J. (November 1986) The N-terminal amino acid sequence of pig kidney endopeptidase-24.11 shows homology with pro-sucrase-isomaltase. Biochem J, 240 (1). pp. 305-8. ISSN 0264-6021 (Print)0264-6021 (Linking)

Findlay, J. B., Pappin, D. J. (September 1986) The opsin family of proteins. Biochem J, 238 (3). pp. 625-42. ISSN 0264-6021 (Print)0264-6021 (Linking)

Short, M. N., Turner, D. S., March, J. F., Pappin, D. J., Parente, A., Davies, J. W. (July 1986) The primary structure of papaya mosaic virus coat protein. Virology, 152 (1). pp. 280-3. ISSN 0042-6822 (Print)0042-6822 (Linking)

Fawell, S. E., Pappin, D. J., McDonald, C. J., Higgins, S. J. (May 1986) Androgen-regulated proteins of rat seminal vesicle secretion constitute a structurally related family present in the copulatory plug. Mol Cell Endocrinol, 45 (2-3). pp. 205-13. ISSN 0303-7207 (Print)0303-7207 (Linking)

Bowles, D. J., Marcus, S. E., Pappin, D. J., Findlay, J. B., Eliopoulos, E., Maycox, P. R., Burgess, J. (April 1986) Posttranslational processing of concanavalin A precursors in jackbean cotyledons. J Cell Biol, 102 (4). pp. 1284-97. ISSN 0021-9525 (Print)0021-9525 (Linking)

Cavanagh, D., Davis, P. J., Pappin, D. J. (February 1986) Coronavirus IBV glycopolypeptides: locational studies using proteases and saponin, a membrane permeabilizer. Virus Res, 4 (2). pp. 145-56. ISSN 0168-1702 (Print)0168-1702 (Linking)

Cavanagh, D., Davis, P. J., Pappin, D. J., Binns, M. M., Boursnell, M. E., Brown, T. D. (February 1986) Coronavirus IBV: partial amino terminal sequencing of spike polypeptide S2 identifies the sequence Arg-Arg-Phe-Arg-Arg at the cleavage site of the spike precursor propolypeptide of IBV strains Beaudette and M41. Virus Res, 4 (2). pp. 133-43. ISSN 0168-1702 (Print)0168-1702 (Linking)

McDonald, C., Fawell, S., Pappin, D., Higgins, S. (1986) Electroelution of proteins from SDS gels. Trends in Genetics, 2 (C). p. 35. ISSN 01689525 (ISSN)

Roberts, L. M., Lamb, F. I., Pappin, D. J., Lord, J. M. (December 1985) The primary sequence of Ricinus communis agglutinin. Comparison with ricin. J Biol Chem, 260 (29). pp. 15682-6. ISSN 0021-9258 (Print)0021-9258 (Linking)

Binns, M. M., Boursnell, M. E., Cavanagh, D., Pappin, D. J., Brown, T. D. (April 1985) Cloning and sequencing of the gene encoding the spike protein of the coronavirus IBV. J Gen Virol, 66 ( P. pp. 719-26. ISSN 0022-1317 (Print)0022-1317 (Linking)

McPherson, M. J., Baron, A. J., Pappin, D. J., Wootton, J. C. (November 1984) Respiratory nitrate reductase of Escherichia coli. Sequence identification of the large subunit gene. FEBS Lett, 177 (2). pp. 260-4. ISSN 0014-5793 (Print)0014-5793 (Linking)

Pappin, D. J., Findlay, J. B., Eliopoulos, E., Brett, M. (February 1984) Sequence variability in the retinal-attachment domain of mammalian rhodopsins. Biochem J, 217 (3). pp. 605-13. ISSN 0264-6021 (Print)0264-6021 (Linking)

Pappin, D. J. C., Eliopoulos, E., Brett, M., Findlay, J. B. C. (1984) A structural model for ovine rhodopsin. International Journal of Biological Macromolecules, 6 (2). pp. 73-76. ISSN 01418130 (ISSN)

Findlay, J. B., Barclay, P. L., Brett, M., Davison, M., Pappin, D. J., Thompson, P. (1984) The structure of mammalian rod opsins. Vision Res, 24 (11). pp. 1501-8. ISSN 0042-6989 (Print)0042-6989 (Linking)

Eliopoulos, E., Geddes, A. J., Brett, M., Pappin, D. J. C., Findlay, J. B. (1982) A structural model for the chromophore-binding domain of ovine rhodopsin. International Journal of Biological Macromolecules, 4 (5). pp. 263-268. ISSN 01418130 (ISSN)

Findlay, J. B., Brett, M., Pappin, D. J. (September 1981) Primary structure of C-terminal functional sites in ovine rhodopsin. Nature, 293 (5830). pp. 314-7. ISSN 0028-0836 (Print)0028-0836 (Linking)

Book Section

Pappin, D. J. C., Rahman, D., Hansen, H. F., Bartlet-Jones, M., Jeffery, W., Bleasby, A. J. (1996) Chemistry, Mass Spectrometry and Peptide-Mass Databases: Evolution of Methods for the Rapid Identification and Mapping of Cellular Proteins. In: Mass Spectrometry in the Biological Sciences. Humana Press, pp. 135-150. ISBN 978-1-4612-6671-6

Pappin, D. J., Rahman, D., Hansen, H. F., Jeffery, W., Sutton, C. W. (1995) Peptide-mass fingerprinting as a tool for the rapid identification and mapping of cellular proteins. In: Methods in Protein Structure Analysis. Plenum Publishing Corp, New York, pp. 161-173.

Bures, E. J., Nika, H., Chow, D. T., Hess, D., Morrison, H. D., Bartlet-Jones, M., Pappin, D. J., Aebersold, R. (1995) Synthesis, evaluation, and application of a panel of novel reagents for stepwise degradation of proteins. In: Methods in Protein Structure Analysis. Plenum Publishing Corp, New York.

Bartlet-Jones, M., Jeffery, W. A., Hansen, H. F., Pappin, D. J. C. (1995) The use of a volatile N-terminal degradation reagent for rapid, high-sensitivity sequence analysis of peptides by generation of sequence ladders. In: Techniques in Protein Chemistry. Academic Press, pp. 3-11. ISBN 1080-8914

Pappin, Darryl J. C., Coull, James M., Koester, Hubert (1990) New Approaches to Covalent Sequence Analysis. In: Current Research in Protein Chemistry. Academic Press, pp. 191-202. ISBN 978-0-12-721955-4

Findlay, J. B., Pappin, D. J., Keen, J. (1989) Automated solid-phase microsequencing. In: Protein Sequencing: A Practical Approach. IRL Publishers, Oxford, pp. 69-84.

Coull, J. M., Dixon, J. D., Laursen, R. A., Köster, H., Pappin, D. (1989) Development of Membrane Supports for the Solid-phase Sequence Analysis of Proteins and Peptides. In: Methods in Protein Sequence Analysis. Springer Berlin Heidelberg, pp. 69-78. ISBN 978-3-642-73836-4

Laursen, R. A., Dixon, J. D., Liang, S., Nguyen, D. M., Kelcourse, T., Udell, L., Pappin, D. (1989) A Second Generation Solid-phase Protein Sequencer: The Prosequencer™. In: Methods in Protein Sequence Analysis. Springer Berlin Heidelberg, pp. 61-68. ISBN 978-3-642-73836-4

Conference or Workshop Item

Paul, S, Heinbaugh, A, Paul, A, Cifani, P, Pappin, D, Spratt, T (2023) Novel role of Translesion DNA synthesis polymerase kappa in the nucleolus and in nucleolar stress response recovery. In: Annual Meeting of the American-Society-for-Cell-Biology/ European-Molecular-Biology-Organisation, DEC 03-07, 2022, Washington, DC.

Londhe, Avinash, Rizvi, Syed Husain Mustafa, Rivera, Keith, Kim, Seung Jun, Pappin, Darryl, Boivin, Ben, Zhang, Fuming, Linhardt, Robert (November 2020) Characterization of Peptide Activators of Protein Tyrosine Phosphatase 1B. In: 27th Annual Conference of the Society-for-Redox-Biology-and-Medicine (SfRBM).

Londhe, Avinash, Boivin, Ben, Bergeron, Alexandre, Rizvi, Syed Husain Mustafa, Kim, Seung Jun, Rivera, Keith, Pappin, Darryl, Tonks, Nicholas (December 2019) 6Characterization of PTP1B Activation by Small Molecules. In: 26th Annual Meeting of the Society-for-Redox-Biology-and-Medicine (SFRBM).

Marchione, Dylan M, Ilieva, Ilyana, Garcia, Benjamin A, Pappin, Darryl J, Wojcik, John B, Wilson, John P (August 2019) HYPERsol: flash-frozen results from archival FFPE samples for clinical proteomics. In: Molecular and Cellular Proteomics.

Naguib, Adam, Bencze, Gylua, Cho, Hyejin, Zheng, Wu, Tocilj, Ante, Elkayam, Elad, Faehnle, Christopher R, Jaber, Nadia, Pratt, Christopher, Chen, Muhan, Zong, Wei-Xing, Marks, Michael S, Joshua-Tor, Leemor, Pappin, Darryl J, Trotman, Lloyd C (August 2015) PTEN function is controlled by recruitment to cytoplasmic vesicles. In: AACR 106th Annual Meeting 2015.

Sherman, N. E., Yates, N. A., Shabanowitz, J., Hunt, D. F., Jeffery, W., Bartlet-Jones, M., Pappin, D. J. (May 1995) A novel N-terminal derivative designed to simplify peptide fragmentation. In: 43rd ASMS Conference on Mass Spectrometry and Allied Topics, May 21st-26th, Atlanta, GA. (Unpublished)

Video

Pappin, D. J. (November 2012) Talk from Darryl Pappin at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)