Items where Community is "Mitra lab"

Paper

Liu, Yufeng, Jiang, Shengdian, Li, Yingxin, Zhao, Sujun, Yun, Zhixi, Zhao, Zuo-Han, Zhang, Lingli, Wang, Gaoyu, Chen, Xin, Manubens-Gil, Linus, Hang, Yuning, Gong, Qiaobo, Li, Yuanyuan, Qian, Penghao, Qu, Lei, Garcia-Forn, Marta, Wang, Wei, De Rubeis, Silvia, Wu, Zhuhao, Osten, Pavel, Gong, Hui, Hawrylycz, Michael, Mitra, Partha, Dong, Hongwei, Luo, Qingming, Ascoli, Giorgio A, Zeng, Hongkui, Liu, Lijuan, Peng, Hanchuan (November 2024) Neuronal diversity and stereotypy at multiple scales through whole brain morphometry. Nature Communications, 15 (1). p. 10269. ISSN 2041-1723 (Public Dataset)

Mitra, Partha, Mezias, Chris, Huo, Bingxing, Bota, Mihail, Jayakumar, Jaikishan (May 2024) Establishing neuroanatomical correspondences across mouse and marmoset brain structures. Research Square. (Submitted)

Throesch, Benjamin T, Bin Imtiaz, Muhammad Khadeesh, Muñoz-Castañeda, Rodrigo, Sakurai, Masahiro, Hartzell, Andrea L, James, Kiely N, Rodriguez, Alberto R, Martin, Greg, Lippi, Giordano, Kupriyanov, Sergey, Wu, Zhuhao, Osten, Pavel, Izpisua Belmonte, Juan Carlos, Wu, Jun, Baldwin, Kristin K (April 2024) Functional sensory circuits built from neurons of two species. Cell, 187 (9). 2143-2157.e15. ISSN 0092-8674

Verma, Richa, Jayakumar, Jaikishan, Folkerth, Rebecca, Manger, Paul R, Bota, Mihail, Majumder, Moitrayee, Pandurangan, Karthika, Savoia, Stephen, Karthik, Srinivasa, Kumarasami, Ramdayalan, Joseph, Jayaraj, Rohini, G, Vasudevan, Sudha, Srinivasan, Chitra, Lata, S, Kumar, E Harish, Rangasami, Rajeswaran, Kumutha, Jayaraman, Suresh, S, Šimić, Goran, Mitra, Partha P, Sivaprakasam, Mohanasankar (April 2024) Histological characterization and development of mesial surface sulci in the human brain at 13-15 gestational weeks through high-resolution histology. Journal of Comparative Neurology, 532 (4). e25612. ISSN 0021-9967

Gustison, Morgan L, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Phelps, Steven M (February 2024) Sexual coordination in a whole-brain map of prairie vole pair bonding. eLife, 12. RP87029. ISSN 2050-084X (Public Dataset)

Pandurangan, Karthika, Jayakumar, Jaikishan, Savoia, Stephen, Nanda, Reetuparna, Lata, S, Kumar, E Harish, S, Suresh, Vasudevan, Sudha, Srinivasan, Chitra, Joseph, Jayaraj, Sivaprakasam, Mohanasankar, Verma, Richa (February 2024) Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain. Journal of Neuroscience Methods, 405. p. 110085. ISSN 0165-0270

Mitra, Partha P, Sire, Clément (December 2023) AI without networks. bioRxiv. (Submitted)

Pandey, Kiran, Bessières, Benjamin, Sheng, Susan L, Taranda, Julian, Osten, Pavel, Sandovici, Ionel, Constancia, Miguel, Alberini, Cristina M (December 2023) Neuronal activity drives IGF2 expression from pericytes to form long-term memory. Neuron, 111 (23). 3819-3836.e8. ISSN 0896-6273

Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Flowers, Katelyn, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (December 2023) The molecular cytoarchitecture of the adult mouse brain. Nature, 624 (7991). pp. 333-342. ISSN 0028-0836

Sun, Shenghuan, Torok, Justin, Mezias, Christopher, Ma, Daren, Raj, Ashish (October 2023) Spatial cell-type enrichment predicts mouse brain connectivity. Cell Reports, 42 (10). p. 113258. ISSN 2211-1247

Jorstad, Nikolas L, Close, Jennie, Johansen, Nelson, Yanny, Anna Marie, Barkan, Eliza R, Travaglini, Kyle J, Bertagnolli, Darren, Campos, Jazmin, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Ding, Song-Lin, Gelfand, Emily, Goldy, Jeff, Hirschstein, Daniel, Kiick, Katelyn, Kroll, Matthew, Kunst, Michael, Lathia, Kanan, Long, Brian, Martin, Naomi, McMillen, Delissa, Pham, Trangthanh, Rimorin, Christine, Ruiz, Augustin, Shapovalova, Nadiya, Shehata, Soraya, Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Callaway, Edward M, Hof, Patrick R, Keene, C Dirk, Levi, Boaz P, Linnarsson, Sten, Mitra, Partha P, Smith, Kimberly, Hodge, Rebecca D, Bakken, Trygve E, Lein, Ed S (October 2023) Transcriptomic cytoarchitecture reveals principles of human neocortex organization. Science, 382 (6667). eadf6812. ISSN 0036-8075

Karthik, Srinivasa, Joseph, Jayaraj, Jayakumar, Jaikishan, Manoj, Rahul, Shetty, Mahesh, Bota, Mihail, Verma, Richa, Mitra, Partha, Sivaprakasam, Mohanasankar (September 2023) Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain. Journal of Neuroscience Methods, 397. p. 109921. ISSN 0165-0270

Peng, Hanchuan, Liu, Yufeng, Jiang, Shengdian, Li, Yingxin, Zhao, Sujun, Yun, Zhixi, Zhao, Zuo-Han, Zhang, Lingli, Wang, Gaoyu, Chen, Xin, Manubens-Gil, Linus, Hang, Yuning, Garcia-Forn, Marta, Wang, Wei, De Rubeis, Silvia, Wu, Zhuhao, Osten, Pavel, Gong, Hui, Hawrylycz, Michael, Mitra, Partha, Dong, Hong-Wei, Luo, Qingming, Ascoli, Giorgio, Zeng, Hongkui, Liu, Lijuan (July 2023) Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry. (Submitted)

James, Ranjit Immanuel, Verma, Richa, Johnson, Latif Rajesh, Manesh, Abi, Jayakumar, Jaikishan, Sen, Mousumi, Joseph, Jayaraj, Kumarasami, Ramdayalan, Mitra, Partha P, Sivaprakasam, Mohanasankar, Varghese, George M (July 2023) A Standardized Protocol for the Safe Retrieval of Infectious Postmortem Human Brain for Studying Whole-Brain Pathology. American Journal of Forensic Medicine and Pathology. ISSN 0195-7910

Corona, Alberto, Choe, Jane, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Shea, Stephen D (July 2023) A circuit from the locus coeruleus to the anterior cingulate cortex modulates offspring interactions in mice. Cell Reports, 42 (7). p. 112771. ISSN 2211-1247

Hawrylycz, Michael, Martone, Maryann E, Ascoli, Giorgio A, Bjaalie, Jan G, Dong, Hong-Wei, Ghosh, Satrajit S, Gillis, Jesse, Hertzano, Ronna, Haynor, David R, Hof, Patrick R, Kim, Yongsoo, Lein, Ed, Liu, Yufeng, Miller, Jeremy A, Mitra, Partha P, Mukamel, Eran, Ng, Lydia, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick L, Sanchez, Raymond, Regev, Aviv, Ropelewski, Alex, Scheuermann, Richard H, Tan, Shawn Zheng Kai, Thompson, Carol L, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Zeng, Hongkui, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas L, Baker, Cody, Baker, Katherine S, Baker, Pamela M, Bandrowski, Anita, Banerjee, Samik, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph R, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy P, Gee, James, Gillespie, Tom, Gouwens, Nathan, Zhang, Guo-Qiang, Halchenko, Yaroslav O, Harris, Nomi L, Herb, Brian R, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Huo, Bingxing, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth A, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Liu, Lijuan, Markuhar, Anup, Mathews, James, Mathews, Kaylee L, Mezias, Chris, Miller, Michael I, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher J, Orvis, Joshua, Puchades, Maja A, Qu, Lei, Receveur, Joseph P, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Tward, Daniel, van Velthoven, Cindy TJ, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zhang, Yun Renee, Zheng, W Jim, Zingg, Brian (June 2023) A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biology, 21 (6). e3002133. ISSN 1544-9173

Langlieb, Jonah, Sachdev, Nina S, Balderrama, Karol S, Nadaf, Naeem M, Raj, Mukund, Murray, Evan, Webber, James T, Vanderburg, Charles, Gazestani, Vahid, Tward, Daniel, Mezias, Chris, Li, Xu, Cable, Dylan M, Norton, Tabitha, Mitra, Partha, Chen, Fei, Macosko, Evan Z (March 2023) The cell type composition of the adult mouse brain revealed by single cell and spatial genomics. bioRxiv. (Submitted)

Mohan, Hemanth, An, Xu, Xu, X Hermione, Kondo, Hideki, Zhao, Shengli, Matho, Katherine S, Wang, Bor-Shuen, Musall, Simon, Mitra, Partha, Huang, Z Josh (January 2023) Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks. Nature Neuroscience. ISSN 1097-6256

Kumarasami, Ramdayalan, Verma, Richa, Pandurangan, Karthika, Ramesh, Jivitha Jyothi, Pandidurai, Sathish, Savoia, Stephen, Jayakumar, Jaikishan, Bota, Mihail, Mitra, Partha, Joseph, Jayaraj, Sivaprakasam, Mohanasankar (2023) A technology platform for standardized cryoprotection and freezing of large-volume brain tissues for high-resolution histology. Frontiers in Neuroanatomy, 17. p. 1292655. ISSN 1662-5129

Anand, Chaitali, Maia, Pedro D, Torok, Justin, Mezias, Christopher, Raj, Ashish (December 2022) The effects of microglia on tauopathy progression can be quantified using Nexopathy in silico (Nexis) models. Scientific Reports, 12 (1). p. 21170. ISSN 2045-2322

Wu, Yuan-Ting, Bennett, Hannah C, Chon, Uree, Vanselow, Daniel J, Zhang, Qingguang, Muñoz-Castañeda, Rodrigo, Cheng, Keith C, Osten, Pavel, Drew, Patrick J, Kim, Yongsoo (June 2022) Quantitative relationship between cerebrovascular network and neuronal cell types in mice. Cell Reports, 39 (12). p. 110978. ISSN 2211-1247

Mohan, Hemanth, An, Xu, Kondo, Hideki, Zhao, Shengli, Matho, Katherine, Musall, Simon, Mitra, Partha, Huang, Z Josh (March 2022) Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks. Research Square. (Unpublished)

Ascoli, GA, Huo, BX, Mitra, PP (January 2022) Sizing up whole-brain neuronal tracing. Science Bulletin. ISSN 2095-9273

BICCN Data Ecosystem Collaboration, Hawrylycz, Michael, Martone, Maryann, Hof, Patrick, Lein, Ed, Regev, Aviv, Ascoli, Giorgio, Bjaalie, Jan, Dong, Hong-Wei, Ghosh, Satrajit, Gillis, Jesse, Hertzano, Ronna, Haynor, David, Kim, Yongsoo, Liu, Yufeng, Miller, Jeremy, Mitra, Partha, Mukamel, Eran, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick, Sanchez, Raymond, Ropelewski, Alex, Scheuermann, Richard, Tan, Shawn, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas, Baker, Pamela, Baker, Cody, Baker, Katherine, Bandrowski, Anita, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy, Gee, James, Gillespie, Tom, Gouwens, Nathan, Halchenko, Yaroslav, Harris, Nomi, Herb, Brian, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Markuhar, Anup, Mathews, James, Mathews, Kaylee, Miller, Michael, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher, Ng, Lydia, Orvis, Joshua, Puchades, Maja, Qu, Lei, Receveur, Joseph, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Thompson, Carol, Tward, Daniel, van Velthoven, Cindy, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zeng, Hongkui, Zhang, Guo-Qiang, Zhang, Yun, Zheng, Jim, Zingg, Brian (2022) The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide. bioRxiv. (Submitted)

Corona, Alberto, Choe, Jane, Muñoz-Castañeda, Rodrigo, Osten, Pavel, Shea, Stephen (2022) A circuit from the locus coeruleus to the anterior cingulate cortex modulates offspring interactions in mice. bioRxiv. (Submitted)

Taranda, Julian, Mathew, Grinu, Watrud, Kaitlin, El-Amine, Nour, Lee, Matthew F, Elowsky, Corey, Bludova, Anastasiia, Escobar Avelar, Sintia, Nowak, Dawid G, Wee, Tse-Luen, Wilkinson, John E, Trotman, Lloyd C, Osten, Pavel (November 2021) Combined whole-organ imaging at single-cell resolution and immunohistochemical analysis of prostate cancer and its liver and brain metastases. Cell Reports, 37 (7). p. 110027. ISSN 2211-1247

Matho, Katherine S, Huilgol, Dhananjay, Galbavy, William, He, Miao, Kim, Gukhan, An, Xu, Lu, Jiangteng, Wu, Priscilla, Di Bella, Daniela J, Shetty, Ashwin S, Palaniswamy, Ramesh, Hatfield, Joshua, Raudales, Ricardo, Narasimhan, Arun, Gamache, Eric, Levine, Jesse M, Tucciarone, Jason, Szelenyi, Eric, Harris, Julie A, Mitra, Partha P, Osten, Pavel, Arlotta, Paola, Huang, Z Josh (October 2021) Genetic dissection of the glutamatergic neuron system in cerebral cortex. Nature, 598 (7879). pp. 182-187. ISSN 0028-0836

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine S, Chen, Xiaoyin, Wang, Quanxin, Foster, Nicholas N, Li, Anan, Narasimhan, Arun, Hirokawa, Karla E, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael S, Chon, Uree, Wheeler, Diek W, Li, Xiangning, Wang, Yun, Naeemi, Maitham, Xie, Peng, Liu, Lijuan, Kelly, Kathleen, An, Xu, Attili, Sarojini M, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D'Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter A, Gou, Lin, Hahn, Joel D, Hatfield, Joshua T, Hintiryan, Houri, Huang, Junxiang Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Nicovich, Philip R, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong W, Wakemen, Wayne, Wang, Yimin, Yao, Shenqin, Yuan, Jing, Zhan, Huiqing, Zhu, Muye, Ng, Lydia, Zhang, Li I, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James C, Kim, Yongsoo, Chung, Kwanghun, Yang, X William, Peng, Hanchuan, Luo, Qingming, Mitra, Partha P, Zador, Anthony M, Zeng, Hongkui, Ascoli, Giorgio A, Josh Huang, Z, Osten, Pavel, Harris, Julie A, Dong, Hong-Wei (October 2021) Cellular anatomy of the mouse primary motor cortex. Nature, 598 (7879). pp. 159-166. ISSN 0028-0836

BRAIN Initiative Cell Census Network (BICCN) (October 2021) A multimodal cell census and atlas of the mammalian primary motor cortex. Nature, 598 (7879). pp. 86-102. ISSN 0028-0836

Mitra, Partha P, Sire, Clément (June 2021) Parameter-free Statistically Consistent Interpolation: Dimension-independent Convergence Rates for Hilbert kernel regression. (Submitted)

Sharma, Ashika, Jayakumar, Jaikishan, Mitra, Partha P, Chakraborti, Sutanu, Kumar, P Sreenivasa (June 2021) Application of Supervised Machine Learning to Extract Brain Connectivity Information from Neuroscience Research Articles. Interdisciplinary Sciences: Computational Life Sciences. ISSN 1913-2751

Mitra, PP (May 2021) Fitting elephants in modern machine learning by statistically consistent interpolation. Nature Machine Intelligence, 3 (5). pp. 378-386. ISSN 2522-5839

Mitra, Partha P (March 2021) Fitting Elephants. arXiv. (Submitted)

BRAIN Initiative Cell Census Network (BICCN), Adkins, Ricky, Aldridge, Andrew, Allen, Shona, Ament, Seth, An, Xu, Armand, Ethan, Ascoli, Giorgio, Bakken, Trygve, Bandrowski, Anita, Banerjee, Samik, Barkas, Nikolaos, Bartlett, Anna, Bateup, Helen, Behrens, Margarita, Berens, Philipp, Berg, Jim, Bernabucci, Matteo, Bernaerts, Yves, Bertagnolli, Darren, Biancalani, Tommaso, Boggeman, Lara, Booeshaghi, Sina, Bowman, Ian, Bravo, Héctor Corrada, Cadwell, Cathryn René, Callaway, Edward, Carlin, Benjamin, O'Connor, Carolyn, Carter, Robert, Casper, Tamara, Castanon, Rosa, Castro, Jesus Ramon, Chance, Rebecca, Chatterjee, Apaala, Chen, Huaming, Chun, Jerold, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, D'Orazi, Florence, Daigle, Tanya, Dalley, Rachel, Dee, Nick, Degatano, Kylee, Dichter, Benjamin, Diep, Dinh, Ding, Liya, Ding, Song-Lin, Dominguez, Bertha, Dong, Hong-Wei, Dong, Weixiu, Dougherty, Elizabeth, Dudoit, Sandrine, Ecker, Joseph, Eichhorn, Stephen, Fang, Rongxin, Felix, Victor, Feng, Guoping, Feng, Zhao, Fischer, Stephan, Fitzpatrick, Conor, Fong, Olivia, Foster, Nicholas, Galbavy, William, Gee, James, Ghosh, Satrajit, Giglio, Michelle, Gillespie, Thomas, Gillis, Jesse, Goldman, Melissa, Goldy, Jeff, Gong, Hui, Gou, Lin, Grauer, Michael, Halchenko, Yaroslav, Harris, Julie, Hartmanis, Leonard, Hatfield, Joshua, Hawrylycz, Mike, Helba, Brian, Herb, Brian, Hertzano, Ronna, Hintiryan, Houri, Hirokawa, Karla, Hockemeyer, Dirk, Hodge, Rebecca, Hood, Greg, Horwitz, Gregory, Hou, Xiaomeng, Hu, Lijuan, Hu, Qiwen, Huang, Josh, Huo, Bingxing, Ito-Cole, Tony, Jacobs, Matthew, Jia, Xueyan, Jiang, Shengdian, Jiang, Tao, Jiang, Xiaolong, Jin, Xin, Jorstad, Nikolas, Kalmbach, Brian, Kancherla, Jayaram, Keene, Dirk, Kelly, Kathleen, Khajouei, Farzaneh, Kharchenko, Peter, Kim, Gukhan, Ko, Andrew, Kobak, Dmitry, Konwar, Kishori, Kramer, Daniel, Krienen, Fenna, Kroll, Matthew, Kuang, Xiuli, Kuo, Hsien-Chi, Lake, Blue, Larsen, Rachael, Lathia, Kanan, Laturnus, Sophie, Lee, Angus, Lee, Cheng-Ta, Lee, Kuo-Fen, Lein, Ed, Lesnar, Phil, Li, Anan, Li, Xiangning, Li, Xu, Li, Yang Eric, Li, Yaoyao, Li, Yuanyuan, Lim, Byungkook, Linnarsson, Sten, Liu, Christine, Liu, Hanqing, Liu, Lijuan, Lucero, Jacinta, Luo, Chongyuan, Luo, Qingming, Macosko, Evan, Mahurkar, Anup, Martone, Maryann, Matho, Katherine, McCarroll, Steven, McCracken, Carrie, McMillen, Delissa, Miranda, Elanine, Mitra, Partha, Miyazaki, Paula Assakura, Mizrachi, Judith, Mok, Stephanie, Mukamel, Eran, Mulherkar, Shalaka, Nadaf, Naeem, Naeemi, Maitham, Narasimhan, Arun, Nery, Joseph, Ng, Lydia, Ngai, John, Nguyen, Thuc Nghi, Nickel, Lance, Nicovich, Philip, Niu, Sheng-Yong, Ntranos, Vasilis, Nunn, Michael, Olley, Dustin, Orvis, Joshua, Osteen, Julia, Osten, Pavel, Owen, Scott, Pachter, Lior, Palaniswamy, Ramesh, Palmer, Carter, Pang, Yan, Peng, Hanchuan, Pham, Thanh, Pinto-Duarte, Antonio, Plongthongkum, Nongluk, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Qu, Lei, Rashid, Mohammad, Reed, Nora, Regev, Aviv, Ren, Bing, Ren, Miao, Rimorin, Christine, Risso, Davide, Rivkin, Angeline, Muñoz-Castañeda, Rodrigo, Romanow, William, Ropelewski, Alexander, Roux de Bézieux, Hector, Ruan, Zongcai, Sandberg, Rickard, Savoia, Steven, Scala, Federico, Schor, Michael, Shen, Elise, Siletti, Kimberly, Smith, Jared, Smith, Kimberly, Somasundaram, Saroja, Song, Yuanyuan, Sorensen, Staci, Stafford, David, Street, Kelly, Sulc, Josef, Sunkin, Susan, Svensson, Valentine, Tan, Pengcheng, Tan, Zheng Huan, Tasic, Bosiljka, Thompson, Carol, Tian, Wei, Tickle, Timothy, Tieu, Michael, Ting, Jonathan, Tolias, Andreas Savas, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Van den Berge, Koen, van Velthoven, Cindy TJ, Vanderburg, Charles, Veldman, Matthew, Vu, Minh, Wakeman, Wayne, Wang, Peng, Wang, Quanxin, Wang, Xinxin, Wang, Yimin, Wang, Yun, Welch, Joshua, White, Owen, Williams, Elora, Xie, Fangming, Xie, Peng, Xiong, Feng, Yang, William, Yanny, Anna Marie, Yao, Zizhen, Yin, Lulu, Yu, Yang, Yuan, Jing, Z, Hongkui (October 2020) A multimodal cell census and atlas of the mammalian primary motor cortex. BioRxiv. (Unpublished)

Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine, Wang, Quanxin, Chen, Xiaoyin, Foster, Nicholas, Narasimhan, Arun, Li, Anan, Hirokawa, Karla, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris Sin, Park, Young-Gyun, Bienkowski, Michael, Chon, Uree, Wheeler, Diek, Li, Xiangning, Wang, Yun, Kelly, Kathleen, An, Xu, Attili, Sarojini, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D’Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter, Gou, Lin, Hahn, Joel, Hatfield, Joshua, Hintiryan, Houri, Huang, Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Liu, Lijuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Naeemi, Maitham, Nicovich, Philip, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong, Wakemen, Wayne, Wang, Yimin, Xie, Peng, Yao, Shenqin, Yuan, Jin, Zhu, Muye, Ng, Lydia, Zhang, Li, Lim, Byung Kook, Hawrylycz, Michael, Gong, Hui, Gee, James, Kim, Yongsoo, Peng, Hanchuan, Chuang, Kwanghun, Yang, William, Luo, Qingming, Mitra, Partha, Zador, Anthony, Zeng, Hongkui, Ascoli, Giorgio, Huang, Josh, Osten, Pavel, Harris, Julie, Dong, Hong-Wei (October 2020) Cellular Anatomy of the Mouse Primary Motor Cortex. BioRxiv. (Unpublished)

Banerjee, Samik, Magee, Lucas, Wang, Dingkang, Li, Xu, Huo, Bing-Xing, Jayakumar, Jaikishan, Matho, Katherine, Lin, Meng-Kuan, Ram, Keerthi, Sivaprakasam, Mohanasankar, Huang, Josh, Wang, Yusu, Mitra, Partha P (October 2020) Semantic segmentation of microscopic neuroanatomical data by combining topological priors with encoder-decoder deep networks. Nature Machine Intelligence, 2 (10). 585-+. ISSN 2522-5839

Pollatou, A., Ferrante, D. D. (August 2020) Out-of-focus brain image detection in serial tissue sections. J Neurosci Methods, 345. p. 108852. ISSN 0165-0270

Reichberg, S. B., Mitra, P. P., Haghamad, A., Ramrattan, G., Crawford, J. M., Berry, G. J., Davidson, K. W., Drach, A., Duong, S., Juretschko, S., Maria, N. I., Yang, Y., Ziemba, Y. C. (July 2020) Rapid Emergence of SARS-CoV-2 in the Greater New York Metropolitan Area: Geolocation, Demographics, Positivity Rates, and Hospitalization for 46,793 Persons Tested by Northwell Health. Clin Infect Dis. ISSN 1058-4838

Lee, B.C., Lin, M.K., Fu, Y., Hata, J., Miller, M.I., Mitra, P. P. (May 2020) Multimodal Cross-registration and Quantification of Metric Distortions in Marmoset Whole Brain Histology using Diffeomorphic Mappings. J Comp Neurol. ISSN 0021-9967

Matho, Katherine, Huilgol, Dhananjay, Galbavy, William, He, Miao, Kim, Gukhan, An, Xu, Lu, Jiangteng, Wu, Priscilla, Di Bella, Daniela, Shetty, Ashwin, Palaniswamy, Ramesh, Hatfield, Joshua, Raudales, Ricardo, Narasimhan, Arun, Gamache, Eric, Levine, Jesse, Tucciarone, Jason, Szelenyi, Eric, Harris, Julie, Mitra, Partha, Osten, Pavel, Arlotta, Paola, Huang, Josh (April 2020) Genetic dissection of glutamatergic neuron subpopulations and developmental trajectories in the cerebral cortex. bioRxiv. (Unpublished)

Majka, P., Bai, S., Bakola, S., Bednarek, S., Chan, J. M., Jermakow, N., Passarelli, L., Reser, D. H., Theodoni, P., Worthy, K. H., Wang, X. J., Wojcik, D. K., Mitra, P. P., Rosa, M. G. P. (February 2020) Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nat Commun, 11 (1). p. 1133. ISSN 2041-1723 (Public Dataset)

Lovell, P. V., Wirthlin, M., Kaser, T., Buckner, A. A., Carleton, J. B., Snider, B. R., McHugh, A. K., Tolpygo, A., Mitra, P. P., Mello, C. V. (February 2020) ZEBrA - Zebra finch Expression Brain Atlas: a resource for comparative molecular neuroanatomy and brain evolution studies. J Comp Neurol. ISSN 0021-9967 (Public Dataset)

Tegling, E., Mitra, P., Sandberg, H., Bamieh, B. (December 2019) On Fundamental Limitations of Dynamic Feedback Control in Regular Large-Scale Networks. Ieee Transactions on Automatic Control, 64 (12). pp. 4936-4951. ISSN 0018-9286

Griffin, A. D., Turtzo, L. C., Parikh, G. Y., Tolpygo, A., Lodato, Z., Moses, A. D., Nair, G., Perl, D. P., Edwards, N. A., Dardzinski, B. J., Armstrong, R. C., Ray-Chaudhury, A., Mitra, P. P., Latour, L. L. (October 2019) Traumatic microbleeds suggest vascular injury and predict disability in traumatic brain injury. Brain, 142 (11). pp. 3550-3564. ISSN 0006-8950

Kleinfeld, D., Luan, L., Mitra, P. P., Robinson, J. T., Sarpeshkar, R., Shepard, K., Xie, C., Harris, T. D. (August 2019) Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain? Neuron, 103 (6). pp. 1005-1015. ISSN 0896-6273

Huo, B. X., Zeater, N., Lin, M. K., Takahashi, Y. S., Hanada, M., Nagashima, J., Lee, B. C., Hata, J., Zaheer, A., Grunert, U., Miller, M. I., Rosa, M. G. P., Okano, H., Martin, P. R., Mitra, P. P. (July 2019) Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets. Eur J Neurosci. ISSN 0953-816x (Public Dataset)

Mitra, Partha P (June 2019) Understanding overfitting peaks in generalization error: Analytical risk curves for $l_2$ and $l_1$ penalized interpolation. (Submitted)

Tward, D. J., Mitra, P. P., Miller, M. I. (June 2019) ESTIMATING DIFFEOMORPHIC MAPPINGS BETWEEN TEMPLATES AND NOISY DATA: VARIANCE BOUNDS ON THE ESTIMATED CANONICAL VOLUME FORM. Quarterly of Applied Mathematics, 77 (2). pp. 467-488. ISSN 0033-569X

Ramezanali, M., Mitra, P. P., Sengupta, A. M. (May 2019) Critical Behavior and Universality Classes for an Algorithmic Phase Transition in Sparse Reconstruction. Journal of Statistical Physics, 175 (3-4). pp. 764-788. ISSN 00224715 (ISSN)

Wang, X., Tucciarone, J., Jiang, S., Yin, F., Wang, B. S., Wang, D., Jia, Y., Jia, X., Li, Y., Yang, T., Xu, Z., Akram, M. A., Wang, Y., Zeng, S., Ascoli, G. A., Mitra, P., Gong, H., Luo, Q., Huang, Z. J. (March 2019) Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Rep, 26 (11). 3145-3159.e5.

Chen, Y., McElvain, L. E., Tolpygo, A. S., Ferrante, D., Friedman, B., Mitra, P. P., Karten, H. J., Freund, Y., Kleinfeld, D. (March 2019) An active texture-based digital atlas enables automated mapping of structures and markers across brains. Nat Methods, 16 (4). pp. 341-350. ISSN 1548-7091

Zaki, A., Mitra, P. P., Rasmussen, L. K., Chatterjee, S. (March 2019) Estimate exchange over network is good for distributed hard thresholding pursuit. Signal Processing, 156. pp. 1-11. ISSN 01651684 (ISSN)

Miller, C. T., Hale, M. E., Okano, H., Okabe, S., Mitra, P. (February 2019) Comparative Principles for Next-Generation Neuroscience. Frontiers in Behavioral Neuroscience, 13. ISSN 1662-5153

Lin, M. K., Takahashi, Y. S., Huo, B. X., Hanada, M., Nagashima, J., Hata, J., Tolpygo, A. S., Ram, K., Lee, B. C., Miller, M. I., Rosa, M. G., Sasaki, E., Iriki, A., Okano, H., Mitra, P. (February 2019) A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Elife, 8. ISSN 2050-084x

Lee, B. C., Tward, D. J., Mitra, P. P., Miller, M. I. (December 2018) On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. PLoS Comput Biol, 14 (12). e1006610. ISSN 1553-734x

Majka, P., Rosa, M. G. P., Bai, S., Chan, J. M., Huo, B. X., Jermakow, N., Lin, M. K., Takahashi, Y. S., Wolkowicz, I. H., Worthy, K. H., Rajan, R., Reser, D. H., Wójcik, D. K., Okano, H., Mitra, P. P. (October 2018) Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey. Brain Structure and Function, 224 (1). pp. 111-131. ISSN 18632653 (ISSN)

Belkin, Mikhail, Hsu, Daniel, Mitra, Partha (June 2018) Overfitting or perfect fitting? Risk bounds for classification and regression rules that interpolate. arXiv. (Submitted)

Lee, Brian C, Lin, Meng Kuan, Fu, Yan, Hata, Junichi, Miller, Michael I, Mitra, Partha P (May 2018) Multimodal Cross-registration and Quantification of Metric Distortions in Whole Brain Histology of Marmoset using Diffeomorphic Mappings. (Submitted)

Mitra, Partha P (March 2018) Fast Convergence for Stochastic and Distributed Gradient Descent in the Interpolation Limit. (Submitted)

Allegra, N., Bamieh, B., Mitra, P., Sire, C. (January 2018) Phase transitions in distributed control systems with multiplicative noise. Journal of Statistical Mechanics-Theory and Experiment. ISSN 1742-5468

Li, Y., Wang, D., Ascoli, G. A., Mitra, P., Wang, Y. (August 2017) Metrics for comparing neuronal tree shapes based on persistent homology. PLoS One, 12 (8). e0182184. ISSN 1932-6203

Chen, Yuncong, McElvain, Lauren, Tolpygo, Alex, Ferrante, Daniel, Karten, Harvey, Mitra, Partha, Kleinfeld, David, Freund, Yoav (February 2017) The Active Atlas: Combining 3D Anatomical Models with Texture Detectors. arXiv. (Submitted)

Kim, Yongsoo, Yang, Guangyu Robert, Pradhan, Kith, Venkataraju, Kannan Umadevi, Bota, Mihail, García del Molino, Luis Carlos, Fitzgerald, Greg, Ram, Keerthi, He, Miao, Levine, Jesse Maurica, Mitra, Partha, Huang, Z. Josh, Wang, Xiao-Jing, Osten, Pavel (2017) Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism. Cell, 171 (2). 456-469.e22. ISSN 0092-8674

Chen, Y., McElvain, L., Tolpygo, A., Ferrante, D., Karten, H., Mitra, P., Kleinfeld, D., Freund, Y. (2017) The active atlas: Combining 3D anatomical models with texture detectors. Lecture Notes in Computer Science, 10433. pp. 3-11. ISSN 978-331966181-0

Vogelstein, Joshua T, Amunts, Katrin, Andreou, Andreas, Angelaki, Dora, Ascoli, Giorgio, Bargmann, Cori, Burns, Randal, Cali, Corrado, Chance, Frances, Chun, Miyoung, Church, George, Cline, Hollis, Coleman, Todd, Rochefoucauld, Stephanie de La, Denk, Winfried, Elgoyhen, Ana Belen, Cummings, Ralph Etienne, Evans, Alan, Harris, Kenneth, Hausser, Michael, Hill, Sean, Inverso, Samuel, Jackson, Chad, Jain, Viren, Kass, Rob, Kasthuri, Bobby, Kiar, Gregory, Kording, Konrad, Koushika, Sandhya, Krakauer, John, Landis, Story, Layton, Jeff, Luo, Qingming, Marblestone, Adam, Markowitz, David, McArthur, Justin, Mensh, Brett, Milham, Michael, Mitra, Partha, Neskovic, Pedja, Nicolelis, Miguel, O'Brien, Richard, Oliva, Aude, Orban, Gergo, Peng, Hanchuan, Picchini-Schaffer, Alyssa, Picciotto, Marina, Poline, Jean-Baptiste, Poo, Mu-ming, Pouget, Alex, Raghavachari, Sri, Roskams, Jane, Sejnowski, Terry, Sommer, Fritz, Spruston, Nelson, Swanson, Larry, Toga, Arthur, Vogelstein, R Jacob, Yuste, Rafael, Zador, Anthony, Huganir, Richard, Miller, Michael (August 2016) Grand Challenges for Global Brain Sciences. arXiv. (Submitted)

Majka, P., Chaplin, T. A., Yu, H. H., Tolpygo, A., Mitra, P. P., Wojcik, D. K., Rosa, M. G. (August 2016) Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. J Comp Neurol, 524 (11). pp. 2161-2181. ISSN 1096-9861 (Electronic)0021-9967 (Linking)

Griffin, A., Tolpygo, A., Parikh, G., Turtzo, C., Moses, A., Ray-Chaudhury, A., Dardzinksi, B., Mitra, P., Latour, L. (July 2016) MRI EVALUATION OF MICROBLEEDS MAY REVEAL ONLY THE TIP OF THE ICEBERG: A 3D HISTOLOGICAL ANALYSIS. Journal of Neurotrauma, 33 (13). A59-A59. ISSN 0897-7151

Gomez-Marin, A., Oron, E., Gakamsky, A., Dan, Valente, Benjamini, Y., Golani, I. (June 2016) Generative rules of Drosophila locomotor behavior as a candidate homology across phyla. Sci Rep, 6. p. 27555. ISSN 2045-2322 (Electronic)2045-2322 (Linking)

Jeong, M., Kim, Y., Kim, J., Ferrante, D. D., Mitra, P. P., Osten, P., Kim, D. (February 2016) Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports, 6. ISSN 20452322

Shemesh, N., Jespersen, S. N., Alexander, D. C., Cohen, Y., Drobnjak, I., Dyrby, T. B., Finsterbusch, J., Koch, M. A., Kuder, T., Laun, F., Lawrenz, M., Lundell, H., Mitra, P. P., Nilsson, M., Ozarslan, E., Topgaard, D., Westin, C. F. (January 2016) Conventions and nomenclature for double diffusion encoding NMR and MRI. Magn Reson Med, 75 (1). pp. 82-87. ISSN 1522-2594 (Electronic)0740-3194 (Linking)

Liu, J., Lee, H. J., Weitz, A. J., Fang, Z., Lin, P., Choy, M., Fisher, R., Pinskiy, V., Tolpygo, A., Mitra, P., Schiff, N., Lee, J. H. (December 2015) Frequency-selective control of cortical and subcortical networks by central thalamus. Elife, 4. e09215. ISSN 2050-084X (Electronic)2050-084X (Linking)

Pinskiy, V., Jones, J., Tolpygo, A. S., Franciotti, N., Weber, K., Mitra, P. P. (July 2015) High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique. PLoS One, 10 (7). e0102363. ISSN 1932-6203 (Electronic)1932-6203 (Linking)

Megjhani, M., Rey-Villamizar, N., Merouane, A., Lu, Y., Mukherjee, A., Trett, K., Chong, P., Harris, C., Shain, W., Roysam, B. (July 2015) Population-scale Three-dimensional Reconstruction and Quantitative Profiling of Microglia Arbors. Bioinformatics, 31 (13). pp. 2190-2198. ISSN 1367-4803

Okano, Hideyuki, Mitra, Partha (April 2015) Brain-mapping projects using the common marmoset. Neuroscience Research, 93. pp. 3-7. ISSN 0168-0102

Henderson, Margaret, Pinskiy, Vadim, Tolpygo, Alexander, Savoia, Stephen, Grange, Pascal, Mitra, Partha (October 2014) Automated placement of stereotactic injections using a laser scan of the skull. (Submitted)

Mitra, Partha P. (September 2014) The Circuit Architecture of Whole Brains at the Mesoscopic Scale. Neuron, 83 (6). pp. 1273-1283. ISSN 0896-6273

Cressy, M., Valente, D., Altick, A., Kockenmesiter, E., Honegger, K., Qin, H., Mitra, P. P., Dubnau, J. (May 2014) Laboratory evolution of adenylyl cyclase independent learning in Drosophila and missing heritability. Genes, Brain and Behavior, 13 (6). pp. 565-577. ISSN 16011848

Grange, P., Bohland, J. W., Okaty, B. W., Sugino, K., Bokil, H., Nelson, S. B., Ng, L., Hawrylycz, M., Mitra, P. P. (April 2014) Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America, 111 (14). pp. 5397-5402. ISSN 0027-8424

Kleinfeld, D., Mitra, P. P. (March 2014) Spectral methods for functional brain imaging. Cold Spring Harbor Protocols, 2014 (3). pp. 248-62. ISSN 1559-6095

Striedter, G. F., Belgard, T. G., Chen, C. C., Davis, F. P., Finlay, B. L., Gunturkun, O., Hale, M. E., Harris, J. A., Hecht, E. E., Hof, P. R., Hofmann, H. A., Holland, L. Z., Iwaniuk, A. N., Jarvis, E. D., Karten, H. J., Katz, P. S., Kristan, W. B., Macagno, E. R., Mitra, P. P., Moroz, L. L., Preuss, T. M., Ragsdale, C. W., Sherwood, C. C., Stevens, C. F., Stuttgen, M. C., Tsumoto, T., Wilczynski, W. (2014) NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species. Brain, Behavior and Evolution, 83 (1). pp. 1-8. ISSN 00068977 (ISSN)

Karten, H. J., Brzozowska-Prechtl, A., Lovell, P. V., Tang, D. D., Mello, C. V., Wang, H., Mitra, P. P. (November 2013) Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas. Journal of Comparative Neurology, 521 (16). pp. 3702-15. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)

Gakamsky, A., Oron, E., Valente, D., Mitra, P. P., Segal, D., Benjamini, Y., Golani, I. (October 2013) The Angular Interval between the Direction of Progression and Body Orientation in Normal, Alcohol- and Cocaine Treated Fruit Flies. PLoS ONE, 8 (10). ISSN 19326203 (ISSN)

Devor, Anna, Bandettini, Peter A, Boas, David A, Bower, James M, Buxton, Richard B, Cohen, Lawrence B, Dale, Anders M, Einevoll, Gaute T, Fox, Peter T, Franceschini, Maria Angela, Friston, Karl J, Fujimoto, James G, Geyer, Mark A, Greenberg, Joel H, Halgren, Eric, Hämäläinen, Matti S, Helmchen, Fritjof, Hyman, Bradley T, Jasanoff, Alan, Jernigan, Terry L, Judd, Lewis L, Kim, Seong-Gi, Kleinfeld, David, Kopell, Nancy J, Kutas, Marta, Kwong, Kenneth K, Larkum, Matthew E, Lo, Eng H, Magistretti, Pierre J, Mandeville, Joseph B, Masliah, Eliezer, Mitra, Partha P, Mobley, William C, Moskowitz, Michael A, Nimmerjahn, Axel, Reynolds, John H, Rosen, Bruce R, Salzberg, Brian M, Schaffer, Chris B, Silva, Gabriel A, So, Peter T C., Spitzer, Nicholas C, Tootell, Roger B, Van Essen, David C, Vanduffel, Wim, Vinogradov, Sergei A, Wald, Lawrence L, Wang, Lihong V, Weber, Bruno, Yodh, Arjun G (October 2013) The Challenge of Connecting the Dots in the B.R.A.I.N. Neuron, 80 (2). pp. 270-274. ISSN 0896-6273

Menashe, I., Grange, P., Larsen, E. C., Banerjee-Basu, S., Mitra, P. P. (July 2013) Co-expression Profiling of Autism Genes in the Mouse Brain. PLoS Computational Biology, 9 (7). ISSN 1553734X

Mitra, P. P., Rosa, M. G., Karten, H. J. (June 2013) Panoptic Neuroanatomy: Digital Microscopy of Whole Brains and Brain-Wide Circuit Mapping. Brain, Behavior and Evolution, 81 (4). pp. 203-205. ISSN 00068977 (ISSN)

Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P (February 2013) Cell-type-specific microarray data and the Allen atlas: quantitative analysis of brain-wide patterns of correlation and density. (Submitted)

Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P (January 2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. (Submitted)

Grange, Pascal, Hawrylycz, Michael, Mitra, Partha P. (2013) Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas. Quantitative Biology, 1 (1). pp. 91-100. ISSN 2095-4689

Pinskiy, V., Tolpygo, A. S., Jones, J., Weber, K., Franciotti, N., Mitra, P. P. (2013) A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal of Neuroscience Methods, 218 (2). pp. 206-21. ISSN 0165-0270

Grange, P., Bohland, J. W., Hawrylycz, M., Mitra, P. P. (November 2012) Brain Gene Expression Analysis: a MATLAB toolbox for the analysis of brain-wide gene-expression data. arXiv. (Unpublished)

Vidne, M., Ahmadian, Y., Shlens, J., Pillow, J. W., Kulkarni, J., Litke, A. M., Chichilnisky, E. J., Simoncelli, E., Paninski, L. (August 2012) Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. Journal of Computational Neuroscience, 33 (1). pp. 97-121. ISSN 09295313 (ISSN)

Grange, Pascal, Mitra, Partha P (May 2012) Computational neuroanatomy and gene expression: optimal sets of marker genes for brain regions. (Submitted)

Grange, P., Mitra, Partha P. (March 2012) Computational neuroanatomy and gene expression: Optimal sets of marker genes for brain regions. 46th Annual Conference on Information Sciences and Systems (CISS).

Helmstaedter, M., Mitra, P. P. (February 2012) Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology, 22 (1). pp. 162-169. ISSN 09594388 (ISSN)

Bamieh, B., Jovanović, M. R., Mitra, P., Patterson, S. (2012) Coherence in large-scale networks: Dimension-dependent limitations of local feedback. IEEE Transactions on Automatic Control, 57 (9). pp. 2235-2249.

Grange, Pascal, Mitra, Partha P (November 2011) Statistical analysis of co-expression properties of sets of genes in the mouse brain. (Submitted)

Grange, Pascal, Bohland, Jason, Bokil, Hemant, Nelson, Sacha, Okaty, Benjamin, Sugino, Ken, Ng, Lydia, Hawrylycz, Michael, Mitra, Partha P (November 2011) A cell-type based model explaining co-expression patterns of genes in the brain. (Submitted)

Grange, Pascal, Mitra, Partha P (May 2011) Marker Genes for Anatomical Regions in the Brain: Insights from the Allen Gene Expression Atlas. (Submitted)

Grange, Pascal, Mitra, Partha P (April 2011) Algorithmic choice of coordinates for injections into the brain: encoding a neuroanatomical atlas on a grid. (Submitted)

Bokil, H. S., Andrews, P., Kulkarni, J. E., Mehta, S., Mitra, P. P. (September 2010) Chronux: A platform for analyzing neural signals. Journal of Neuroscience Methods, 10 (Supp 1). pp. 146-151.

Bolduc, F. V., Valente, D., Nguyen, A. T., Mitra, P. P., Tully, T. (July 2010) An assay for social interaction in Drosophila fragile X mutants. Fly (Austin), 4 (3). ISSN 1933-6942 (Electronic) 1933-6934 (Linking)

Bohland, J. W., Bullock, D., Guenther, F. H. (April 2010) Neural representations and mechanisms for the performance of simple speech sequences. Journal of Cognitive Neuroscience, 22 (7). pp. 1504-1529.

Menzer, D. L., Bokil, H., Ryou, J. W., Schiff, N. D., Purpura, K. P., Mitra, P. P. (February 2010) Characterization of trial-to-trial fluctuations in local field potentials recorded in cerebral cortex of awake behaving macaque. Journal of Neuroscience Methods, 186 (2). pp. 250-261.

Bohland, J. W., Bokil, H., Pathak, S. D., Lee, C. K., Ng, L., Lau, C., Kuan, C., Hawrylycz, M., Mitra, P. P. (February 2010) Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods, 50 (2). pp. 105-112.

Erlich, Y., Gordon, A., Brand, M., Hannon, G. J., Mitra, P. P. (February 2010) Compressed genotyping. IEEE Transactions on Information Theory, 56 (2). pp. 706-723.

Bohland, J. W., Bokil, H., Allen, C. B., Mitra, P. P. (September 2009) The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PLoS ONE, 4 (9). e7200. ISSN 1932-6203 (Electronic)

Erlich, Yaniv, Gordon, Assaf, Brand, Michael, Hannon, Gregory J, Mitra, Partha P (September 2009) Compressed Genotyping. IEEE Transactions on Information Theory. (Submitted)

Feher, O., Wang, H., Saar, S., Mitra, P. P., Tchernichovski, O. (May 2009) De novo establishment of wild-type song culture in the zebra finch. Nature, 459 (7246). pp. 564-568. ISSN 0028-0836

Ng, L., Bernard, A., Lau, C., Overly, C. C., Dong, H.-W., Kuan, C., Pathak, S., Sunkin, S. M., Dang, C., Bohland, J. W., Bokil, H. S., Mitra, P. P., Puelles, L., Hohmann, J., Anderson, D. J., Lein, E. S., Jones, A. R., Hawrylycz, M. (March 2009) An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci, 12 (3). pp. 356-362. ISSN 1097-6256

Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., Haber, S. N., Hawrylycz, M., Herrera, D. G., Hilgetag, C. C., Huang, Z. J., Jones, A., Jones, E. G., Karten, H. J., Kleinfeld, D., Kotter, R., Lester, H. A., Lin, J. M., Mensh, B. D., Mikula, S., Panksepp, J., Price, J. L., Safdieh, J., Saper, C. B., Schiff, N. D., Schmahmann, J. D., Stillman, B. W., Svoboda, K., Swanson, L. W., Toga, A. W., Van Essen, D. C., Watson, J. D., Mitra, P. P. (March 2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology, 5 (3). e1000334. ISSN 1553734X

Bohland, Jason W, Wu, Caizhi, Barbas, Helen, Bokil, Hemant, Bota, Mihail, Breiter, Hans C, Cline, Hollis T, Doyle, John C, Freed, Peter J, Greenspan, Ralph J, Haber, Suzanne N, Hawrylycz, Michael, Herrera, Daniel G, Hilgetag, Claus C, Huang, Z Josh, Jones, Allan, Jones, Edward G, Karten, Harvey J, Kleinfeld, David, Kotter, Rolf, Lester, Henry A, Lin, John M, Mensh, Brett D, Mikula, Shawn, Panksepp, Jaak, Price, Joseph L, Safdieh, Joseph, Saper, Clifford B, Schiff, Nicholas D, Schmahmann, Jeremy D, Stillman, Bruce W, Svoboda, Karel, Swanson, Larry W, Toga, Arthur W, Essen, David C Van, Watson, James D, Mitra, Partha P (January 2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Computational Biology. (Submitted)

Erlich, Y., Mitra, P. P., Delabastide, M., McCombie, W. R., Hannon, G. J. (August 2008) Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nature Methods, 5 (8). 679 - 682.

Lin, J. M., Bohland, J. W., Andrews, P., Burns, G. A., Allen, C. B., Mitra, P. P. (April 2008) An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006. PLoS ONE, 3 (4). e2052. ISSN 1932-6203 (Electronic)

Saar, S., Mitra, P. P. (January 2008) A technique for characterizing the development of rhythms in bird song. PLoS ONE, 3 (1). e1641.

Bamieh, B., Jovanovic, M., Mitra, P. P., Patterson, S. (2008) Effect of topological dimension on rigidity of vehicle formations: Fundamental limitations of local feedback. IEEE Conference on Decision and Control. pp. 369-374.

Valente, D., Golani, I., Mitra, P. P. (October 2007) Analysis of the Trajectory of Drosophila melanogaster in a Circular Open Field Arena. PLoS ONE, 2 (10). e1083. ISSN 1932-6203 (Electronic)

Valente, D., Wang, H., Andrews, P., Mitra, P. P. (October 2007) Characterizing animal behavior through audio and video signal processing. IEEE Multimedia, 14 (4). pp. 32-41. ISSN 1070-986X

DeCoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (May 2007) Oscillations of local field potentials in the rat dorsal striatum during spontaneous and instructed behaviors. Journal of Neurophysiology, 97 (5). pp. 3800-3805. ISSN 0022-3077

Mitra, P. P. (April 2007) NIH Conference on Knowledge Environments for Biomedical Research (December 11-12, 2006). Neuroinformatics, 5 (2). pp. 139-140. ISSN 1539-2791

Decoteau, W. E., Thorn, C., Gibson, D. J., Courtemanche, R., Mitra, P. P., Kubota, Y., Graybiel, A. M. (March 2007) Learning-related coordination of striatal and hippocampal theta rhythms during acquisition of a procedural maze task. Proc Natl Acad Sci U S A, 104 (13). pp. 5644-9. ISSN 0027-8424 (Print)

Bokil, H. S., Purpura, K., Schoffelen, J. M., Thomson, D., Mitra, P. P. (January 2007) Comparing spectra and coherences for groups of unequal size. J Neurosci Methods, 159 (2). pp. 337-45. ISSN 0165-0270 (Print)

Bokil, H. S., Mitra, P. P. (2007) Non-parametric methods for the analysis of neurobiological time-series data. 46th IEEE Conference on Decision and Control, 2007. pp. 5833-5838.

Sengupta, A. M., Mitra, P. P. (December 2006) Capacity of multivariate channels with multiplicative noise: Random matrix techniques and large-N expansions (2). Journal of Statistical Physics, 125 (5-6). pp. 1227-1246. ISSN 0022-4715

Mitra, P. P., Maniar, H. (September 2006) Concentration maximization and local basis expansions (LBEX) for linear inverse problems. IEEE Trans Biomed Eng, 53 (9). pp. 1775-82. ISSN 0018-9294 (Print)

Mitra, P. P., Khammash, M. (September 2006) Special issue on "Control biology - Emerging field of life science that connects biology and control". Asian Journal of Control, 8 (3). III-IV. ISSN 1561-8625

Bokil, H. S., Pesaran, B., Andersen, R. A., Mitra, P. P. (August 2006) A method for detection and classification of events in neural activity. IEEE Trans Biomed Eng, 53 (8). pp. 1678-87. ISSN 0018-9294 (Print)

Bokil, H. S., Tchernichovsky, O., Mitra, P. P. (March 2006) Dynamic phenotypes: Time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics, 4 (1). pp. 119-128. ISSN 1539-2791

Womelsdorf, T., Fries, P., Mitra, P. P., Desimone, R. (2006) Gamma-band synchronization in visual cortex predicts speed of change detection. Nature, 439 (7077). pp. 733-736. ISSN 00280836

Mitra, Partha P (October 2005) Bending a slab of neural tissue. (Submitted)

Sigloch, K., Andrews, M. R., Mitra, P. P., Thomson, D. J. (June 2005) Communicating over nonstationary nonflat wireless channels. IEEE Transactions on Signal Processing, 53 (6). pp. 2216-2227. ISSN 1053587X

Deregnaucourt, S., Mitra, P. P., Feher, O., Pytte, C., Tchernichovski, O. (February 2005) How sleep affects the developmental learning of bird song. Nature, 433 (7027). pp. 710-716. ISSN 0028-0836

Mitra, P. P. (2005) Bending a slab of neural tissue. http://arXiv:q-bio/0510034v2 [q-bio.TO]. pp. 1-6.

Menzer, D., Hudson, A. E., Schiff, N. D., Bokil, H., Pesaran, B., Purpura, K. P., Mitra, P. P. (2005) Task dependent modulation of monkey frontal lobe field potentials during visual working memory. Journal of Cognitive Neuroscience. p. 146. ISSN 0898-929X

Bokil, H., Pesaran, B., Andersen, R. A., Mitra, P. P. (2005) A framework for detection and classification of events in neural activity. arXiv.

Brown, E. N., Kass, R. E., Mitra, P. P. (May 2004) Multiple neural spike train data analysis: state-of-the-art and future challenges. Nature Neuroscience, 7 (5). pp. 456-461. ISSN 1097-6256

Wegener, L. G. L., Povinelli, M. L., Green, A. G., Mitra, P. P., Stark, J. B., Littlewood, P. B. (2004) The effect of propagation nonlinearities on the information capacity of WDM optical fiber systems: cross-phase modulation and four-wave mixing. Physica D: Nonlinear Phenomena, 189 (1–2). pp. 81-99. ISSN 0167-2789

Green, A. G., Mitra, P. P., Wegener, L. G. L. (2003) Effect of chromatic dispersion on nonlinear phase noise. Optics Letters, 28 (24). pp. 2455-2457. ISSN 01469592 (ISSN)

Shenoy, K. V., Meeker, D., Cao, S., Kureshi, S. A., Pesaran, B., Buneo, C. A., Batista, A. P., Mitra, P. P., Burdick, J. W., Andersen, R. A. (2003) Neural prosthetic control signals from plan activity. NeuroReport, 14 (4). pp. 591-596. ISSN 09594965 (ISSN)

Green, AG, Littlewood, PB, Mitra, PP, Wegener, LGL (October 2002) Schrodinger equation with a spatially and temporally random potential: Effects of cross-phase modulation in optical communication. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. (Submitted)

Wang, S. S. H., Mitra, P. P., Clark, D. A. (January 2002) Brain evolution (Communications arising): How did brains evolve? Nature, 415 (6868). p. 135. ISSN 0028-0836

Ramanan, K., Sengupta, A., Ziedins, I., Mitra, P. P. (2002) Markov random field models of multicasting in tree networks. Advances in Applied Probability, 34 (1). pp. 58-84. ISSN 00018678 (ISSN)

Mitra, Partha P., Stark, Jason B., Green, Andrew G. (2002) Nonlinear Propagation and Information Theory. OPN Trends, 13 (3(Supp). S22-28.

Green, A. G., Littlewood, P. B., Mitra, P. P., Wegener, L. G. L. (2002) Schrödinger equation with a spatially and temporally random potential: Effects of cross-phase modulation in optical communication. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 66 (4). 046627/1-046627/12. ISSN 15393755 (ISSN)

Pesaran, B., Pezaris, J. S., Sahani, M., Mitra, P. P., Andersen, R. A. (2002) Temporal structure in neuronal activity during working memory in macaque parietal cortex. Nature Neuroscience, 5 (8). pp. 805-811. ISSN 10976256 (ISSN)

Tchernichovski, O., Mitra, P. P. (2002) Towards quantification of vocal imitation in the zebra finch. Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology, 188 (11-12). pp. 867-878. ISSN 03407594 (ISSN)

Narimanov, E. E., Mitra, P. P. (2002) The channel capacity of a fiber optics communication system: Perturbation theory. Journal of Lightwave Technology, 20 (3). pp. 530-537. ISSN 07338724 (ISSN)

Tchernichovski, O., Mitra, P. P., Lints, T., Nottebohm, F. (2001) Dynamics of the vocal imitation process: How a zebra finch learns its song. Science, 291 (5513). pp. 2564-2569. ISSN 00368075 (ISSN)

Stark, J. B., Mitra, P., Sengupta, A. (2001) Information capacity of nonlinear wavelength division multiplexing fiber optic transmission line. Optical Fiber Technology, 7 (4). pp. 275-288. ISSN 10685200 (ISSN)

Mitra, P. P., Stark, J. B. (2001) Nonlinear limits to the information capacity of optical fibre communications. Nature, 411 (6841). pp. 1027-1030. ISSN 00280836 (ISSN)

Jarvis, M. R., Mitra, P. P. (2001) Sampling properties of the spectrum and coherency of sequences of action potentials. Neural Computation, 13 (4). pp. 717-749. ISSN 08997667 (ISSN)

Clark, D. A., Mitra, P. P., Wang, S. S. H. (2001) Scalable architecture in mammalian brains. Nature, 411 (6834). pp. 189-193. ISSN 00280836 (ISSN)

Andrews, M. R., Mitra, P. P., Decarvalho, R. (2001) Tripling the capacity of wireless communications using electromagnetic polarization. Nature, 409 (6818). pp. 316-318. ISSN 00280836 (ISSN)

Mitra, Partha P, Stark, Jason B (November 2000) Nonlinear limits to the information capacity of optical fiber communications. (Submitted)

Sengupta, Anirvan Mayukh, Mitra, Partha Pratim (October 2000) Capacity of multivariate channels with multiplicative noise: I.Random matrix techniques and large-N expansions for full transfer matrices. (Submitted)

Jarvis, MR, Mitra, PP (February 2000) Sampling Properties of the Spectrum and Coherency of Sequences of Action Potentials. (Submitted)

Jarvis, M. R., Mitra, P. P. (2000) Apnea patients characterized by 0.02 Hz peak in the multitaper spectrogram of electrocardiogram signals. Computers in Cardiology 2000. pp. 769-772.

Ribary, U., Mitra, P. (2000) Thalamo-cortical spatio-temporal dynamics and its alterations in human brain pathology. NeuroImage, 11 (5, Sup). xxv-lxviii. ISSN 1053-8119

Tchernichovski, O., Nottebohm, F., Ho, C. E., Pesaran, B., Mitra, P. P. (2000) A procedure for an automated measurement of song similarity. Animal Behaviour, 59 (6). pp. 1167-1176. ISSN 00033472 (ISSN)

Llinas, R. R., Ribary, U., Jeanmonod, D., Kronberg, E., Mitra, P. P. (December 1999) Thalamocortical dysrhythmia: A neurological and neuropsychiatric syndrome characterized by magnetoencephalography. Proceedings of the National Academy of Sciences, 96 (26). pp. 15222-15227.

Mitra, P. P., Pesaran, B. (February 1999) Analysis of dynamic brain imaging data. Biophysical Journal, 76 (2). 691-708 .

Sengupta, A. M., Mitra, P. P. (1999) Distributions of singular values for some random matrices. Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 60 (3). pp. 3389-3392. ISSN 1063651X (ISSN)

Tchernichovski, O., Lints, T., Mitra, P. P., Nottebohm, F. (1999) Vocal imitation in zebra finches is inversely related to model abundance. Proceedings of the National Academy of Sciences of the United States of America, 96 (22). pp. 12901-12904. ISSN 00278424 (ISSN)

Mitra, PP, Pesaran, B (April 1998) Analysis of Dynamic Brain Imaging Data. Biophysical Journal. (Submitted)

Pesaran, B, Mitra, PP (January 1998) Idl Signal Processing Library 1.0. (Submitted)

Kleinfeld, D., Mitra, P. P., Helmchen, F., Denk, W. (1998) Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. Proceedings of the National Academy of Sciences of the United States of America, 95 (26). pp. 15741-15746. ISSN 00278424 (ISSN)

Brener, I., Mitra, P. P., Lee, D. D., Thomson, D. J., Philen, D. L. (1998) High-resolution zero-dispersion wavelength mapping in single-mode fiber. Optics Letters, 23 (19). pp. 1520-1522. ISSN 01469592 (ISSN)

Fee, M. S., Shraiman, B., Pesaran, B., Mitra, P. P. (1998) The role of nonlinear dynamics of the syrinx in the vocalizations of a songbird. Nature, 395 (6697). pp. 67-71. ISSN 00280836 (ISSN)

Sengupta, AM, Mitra, PP (September 1997) Distributions of Singular Values for Some Random Matrices. (Submitted)

Kupferman, R., Mitra, P. P., Hohenberg, P. C., Wang, S. S. H. (1997) Analytical calculation of intracellular calcium wave characteristics. Biophysical Journal, 72 (6). pp. 2430-2444. ISSN 00063495 (ISSN)

Fee, M. S., Mitra, P. P., Kleinfeld, D. (1997) Central versus peripheral determinants of patterned spike activity in rat vibrissa cortex during whisking. Journal of Neurophysiology, 78 (2). pp. 1144-1149. ISSN 00223077 (ISSN)

Mitra, P. P. (1997) Diffusion in porous materials as probed by pulsed gradient NMR measurements. Physica A: Statistical Mechanics and its Applications, 241 (1-2). pp. 122-127. ISSN 03784371 (ISSN)

Kleinfeld, D., Mitra, P. P., Fee, M. S. (1997) Motor modulation of sensory input: Exploratory whisking by rat as a model system. Somatosensory and Motor Research, 14 (1). p. 63. ISSN 0899-0220

Schwartz, L. M., Hürlimann, M. D., Dunn, K. J., Mitra, P. P., Bergman, D. J. (1997) Restricted diffusion and the return to the origin probability at intermediate and long times. Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 55 (4). pp. 4225-4234. ISSN 1063651X (ISSN)

Prechtl, J. C., Cohen, L. B., Pesaran, B., Mitra, P. P., Kleinfeld, D. (1997) Visual stimuli induce waves of electrical activity in turtle cortex. Proceedings of the National Academy of Sciences of the United States of America, 94 (14). pp. 7621-7626. ISSN 00278424 (ISSN)

Mitra, P. P., Ogawa, S., Hu, X., Uǧurbil, K. (1997) The nature of spatiotemporal changes in cerebral hemodynamics as manifested in functional magnetic resonance imaging. Magnetic Resonance in Medicine, 37 (4). pp. 511-518. ISSN 07403194 (ISSN)

Fee, M. S., Mitra, P. P., Kleinfeld, D. (November 1996) Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability. Journal of Neuroscience Methods, 69 (2). pp. 175-188. ISSN 0165-0270

Fordham, E. J., Mitra, P. P., Latour, L. L. (1996) Effective Diffusion Times in Multiple-Pulse PFG Diffusion Measurements in Porous Media. Journal of Magnetic Resonance, Series A, 121 (2). pp. 187-192. ISSN 1064-1858

De Swiet, T. M., Mitra, P. P. (1996) Possible systematic errors in single-shot measurements of the trace of the diffusion tensor. Journal of Magnetic Resonance - Series B, 111 (1). pp. 15-22. ISSN 10641866 (ISSN)

Schwartz, L. M., Bergman, D. J., Dunn, K. J., Mitra, P. P. (1996) Self-diffusion in periodic porous media: A comparison of numerical simulation and eigenvalue methods. Magnetic Resonance Imaging, 14 (7-8). pp. 737-743. ISSN 0730725X (ISSN)

Ogawa, S., Mitra, P. P., Hu, X., Ugurbi, K. (1996) Spatio-temporal patterns revealed in denoised fMRI data. Electroencephalography and clinical neurophysiology. Supplement, 47. pp. 5-14. ISSN 04248155 (ISSN)

Fee, M. S., Mitra, P. P., Kleinfeld, D. (1996) Variability of extracellular spike waveforms of cortical neurons. Journal of Neurophysiology, 76 (6). pp. 3823-3833. ISSN 00223077 (ISSN)

Svoboda, K., Mitra, P. P., Block, S. M. (April 1995) Fluctuation analysis of kinesin movement. Biophys J, 68 (4 Supp). 69S. ISSN 0006-3495 (Print)

Mitra, P. P., Halperin, B. I. (1995) Effects of Finite Gradient-Pulse Widths in Pulsed-Field-Gradient Diffusion Measurements. Journal of Magnetic Resonance, Series A, 113 (1). pp. 94-101. ISSN 10641858 (ISSN)

Mitra, P. P. (1995) Multiple wave-vector extensions of the NMR pulsed-field-gradient spin-echo diffusion measurement. Physical Review B, 51 (21). pp. 15074-15078. ISSN 01631829 (ISSN)

Latour, L. L., Kleinberg, R. L., Mitra, P. P., Sotak, C. H. (1995) Pore-Size Distributions and Tortuosity in Heterogeneous Porous Media. Journal of Magnetic Resonance, Series A, 112 (1). pp. 83-91. ISSN 10641858 (ISSN)

Mitra, P. P., Latour, L. L., Kleinberg, R. L., Sotak, C. H. (1995) Pulsed Field Gradient NMR Measurements of Restricted Diffusion and the Return to the Origin Probability. Journal of Magnetic Resonance, Series A, 114 (1). pp. 47-58. ISSN 10641858 (ISSN)

Bergman, D. J., Dunn, K. J., Schwartz, L. M., Mitra, P. P. (1995) Self-diffusion in a periodic porous medium: A comparison of different approaches. Physical Review E, 51 (4). pp. 3393-3400. ISSN 1063651X (ISSN)

Svoboda, K., Mitra, P. P., Block, S. M. (December 1994) Fluctuation analysis of motor protein movement and single enzyme kinetics. Proc Natl Acad Sci U S A, 91 (25). pp. 11782-6. ISSN 0027-8424

Latour, L. L., Svoboda, K., Mitra, P. P., Sotak, C. H. (February 1994) Time-dependent diffusion of water in a biological model system. Proc Natl Acad Sci U S A, 91 (4). pp. 1229-33. ISSN 0027-8424

Kleinberg, R. L., Kenyon, W. E., Mitra, P. P. (1994) Mechanism of NMR Relaxation of Fluids in Rock. Journal of Magnetic Resonance, Series A, 108 (2). pp. 206-214. ISSN 10641858 (ISSN)

Sen, P. N., Schwartz, L. M., Mitra, P. P. (1994) Probing the structure of porous media using NMR spin echoes. Magnetic Resonance Imaging, 12 (2). pp. 227-230. ISSN 0730-725X

Schwartz, L. M., Sen, P. N., Mitra, P. P. (1994) Simulations of pulsed field gradient spin-echo measurements in porous media. Magnetic Resonance Imaging, 12 (2). pp. 241-244. ISSN 0730-725X

Sen, P. N., Schwartz, L. M., Mitra, P. P., Halperin, B. I. (1994) Surface relaxation and the long-time diffusion coefficient in porous media: Periodic geometries. Physical Review B, 49 (1). pp. 215-225. ISSN 01631829 (ISSN)

Mitra, P. P., Halperin, B. I. (1994) Understanding far-infrared absorption in the S=1 antiferromagnetic chain compound NENP. Physical Review Letters, 72 (6). pp. 912-915. ISSN 00319007 (ISSN)

Svoboda, K., Latour, L. L., Mitra, P. P., Sotak, C. H. (February 1993) Surface-to-Volume Ratio and Membrane-Permeability Derived from Time-Dependent Diffusion of Water through Biological Membranes. Biophysical Journal, 64 (2). A131-A131. ISSN 0006-3495

Mitra, P. P., Sen, P. N., Schwartz, L. M. (1993) Short-time behavior of the diffusion coefficient as a geometrical probe of porous media. Physical Review B, 47 (14). pp. 8565-8574. ISSN 01631829 (ISSN)

Latour, L. L., Mitra, P. P., Kleinberg, R. L., Sotak, C. H. (1993) Time-Dependent Diffusion Coefficient of Fluids in Porous Media as a Probe of Surface-to-Volume Ratio. Journal of Magnetic Resonance, Series A, 101 (3). pp. 342-346. ISSN 10641858 (ISSN)

Mitra, P. P., Sen, P. N., Schwartz, L. M., Le Doussal, P. (1992) Diffusion propagator as a probe of the structure of porous media. Physical Review Letters, 68 (24). pp. 3555-3558. ISSN 00319007 (ISSN)

Mitra, P. P., Sen, P. N. (1992) Effects of microgeometry and surface relaxation on NMR pulsed-field- gradient experiments: Simple pore geometries. Physical Review B, 45 (1). pp. 143-156. ISSN 01631829 (ISSN)

Mitra, P. P., Sen, P. N. (1992) Effects of surface relaxation on NMR pulsed field gradient experiments in porous media. Physica A: Statistical Mechanics and its Applications, 186 (1-2). pp. 109-114. ISSN 03784371 (ISSN)

Sarma, D. D., Krishnamurthy, H. R., Nimkar, S., Ramasesha, S., Mitra, P. P., Ramakrishnan, T. V. (1992) Electronic structure of high-Tc superconductors and related compounds. Pramana, 38 (5). L531-L538. ISSN 03044289 (ISSN)

Mitra, P. P., Halperin, B. I., Affleck, I. (1992) Temperature dependence of the electron-spin-resonance spectrum of the chain-end S=1/2 modes in an S=1 antiferromagnetic chain. Physical Review B, 45 (10). pp. 5299-5306. ISSN 01631829 (ISSN)

Bose, I. I., Mitra, P. (July 1991) Frustrated spin-1/2 model in two dimensions with a known ground state. Physical Review. B, Condensed Matter, 44 (1). pp. 443-445. ISSN 0163-1829 (Print)0163-1829

Mitra, P. P., Le Doussal, P. (1991) Long-time magnetization relaxation of spins diffusing in a random field. Physical Review B, 44 (21). pp. 12035-12038. ISSN 01631829 (ISSN)

Book Section

Günay, Cengiz, Smolinski, Tomasz G, Lytton, William W, Morse, Thomas M, Gleeson, Padraig, Crook, Sharon, Steuber, Volker, Silver, Angus, Voicu, Horatiu, Andrews, Peter, Bokil, Hemant, Maniar, Hiren, Loader, Catherine, Mehta, Samar, Kleinfeld, David, Thomson, David, Mitra, Partha P., Aaron, Gloster, Fellous, Jean-Marc (2008) Computational Intelligence in Electrophysiology: Trends and Open Problems. In: Applications of Computational Intelligence in Biology. Studies in Computational Intelligence, 122 . Springer Berlin Heidelberg, pp. 325-359. ISBN 978-3-540-78533-0

Deregnaucourt, S., Mitra, P. P., Feher, O., Maul, K. K., Lints, T. J., Tchernichovski, O. (2004) Song development: In search of the error-signal. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 364-376. ISBN 0077-8923

Tchernichovski, O., Lints, T. J., Deregnaucourt, S., Cimenser, A., Mitra, P. P. (2004) Studying the song development process rationale and methods. In: Behavioral Neurobiology of Birdsong. Annals of the New York Academy of Sciences, 1016 . New York Acad Sciences, New York, pp. 348-363. ISBN 0077-8923

Conference or Workshop Item

Wu, Yuan-Ting, Bennett, Hannah, Chon, URee, Vanselow, Daniel, Zhang, Qingguang, Munoz-Castaneda, Rodrigo, Cheng, Keith, Osten, Pavel, Drew, Patrick, Kim, Yongsoo (2022) Quantitative relationship between the cerebrovascular network and neuronal cell types in mice. In: BRAIN and BRAIN-PET 2022.

Sharma, A, Jayakumar, J, Sankaran, N, Mitra, PP, Chakraborti, S, Sreenivasa Kumar, P (January 2021) ConnExt-BioBERT: Leveraging Transfer Learning for Brain-Connectivity Extraction from Neuroscience Articles. In: International Conference on Brain Informatics.

Tward, D, Li, X, Huo, B, Lee, B, Mitra, P, Miller, M (January 2019) 3D Mapping of Serial Histology Sections with Anomalies Using a Novel Robust Deformable Registration Algorithm. In: Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy.

Belkin, M., Hsu, D., Mitra, P. P. (December 2018) Overfitting or perfect fitting? Risk bounds for classification and regression rules that interpolate. In: 32nd Conference on Neural Information Processing Systems, NeurIPS 2018, Montreal, Canada.

Tward, DJ, Lee, B, Mitra, P, Miller, MI (July 2017) Performance of image matching in the computational anatomy gateway: CPU and GPU implementations in opencl. In: PEARC17: Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact.

Tolpygo, Alexander, Lodato, Z, Ferrante, D, Chaudhury, AR, Dardinski, B, Griffin, A, Moses, A, Nair, G, Parikh, G, Perl, DP, Mitra, PP, Latour, L (July 2016) ADVANCES TOWARD 3D HISTOLOGICAL RECONSTRUCTION OF TRAUMATIC VASCULAR INJURY. In: 34th Annual National Neurotrauma Symposium.

Ramezanali, Mohammad, Mitra, Partha P, Sengupta, Anirvan M (2016) Mean Field Analysis of Sparse Reconstruction with Correlated Variables. In: European Signal Processing Conference, 29 Aug 2016 - 2 Sep 2016.

Rosa, M, Majka, P, Chaplin, T, Yu, H-H, Wojcik, D, Mitra, P (August 2015) Mapping neural connections in primates - an expanding role for cortical connectivity atlases. In: 25th Biennial Meeting of the International-Society-for-Neurochemistry Jointly with the 13th Meeting of the Asian-Pacific-Society-for-Neurochemistry in Conjunction with the 35th Meeting of the Australasian-Neuroscience-Society.

Andrews, P. , Saar, S., Wang, H., Valente, D., Serkhane, J., Tchernichovsky, O., Golani, I., Mitra, P. P. (October 2006) Multimedia signal processing for behavioral quantification in neuroscience. In: International Multimedia Conference: Proceedings of the 14th annual ACM international conference on Multimedia , Santa Barbara, CA.

Mitra, P. P., Maniar, H. D. (2005) Local basis expansions for MEG Source Localization. In: 5th International Conference on Bioelectromagnetism & Symposium on Noninvasive Functional Source Imaging, Minneapolis.

Maniar, H. D., Mitra, P. P. (2005) The concentration problem for vector fields. In: 5th International Conference on Bioelectromagnetism & Symposium on Noninvasive Functional Source Imaging, Minneapolis.

Mitra, PP (2002) Capacity of fiber: Nonlinear propagation and information theory. In: 15th Annual Meeting of the IEEE-Lasers-and-Electro-Optics-Society.

Niyogi, P, Mitra, P, Sondhi, MM (January 1998) A Detection Framework for Locating Phonetic Events. In: UNSPECIFIED.

Book

Mitra, P. P. (November 2018) Fast convergence for stochastic and distributed gradient descent in the interpolation limit. European Signal Processing Conference, EUSIPCO, pp. 1890-1894. ISBN 22195491 (ISSN); 9789082797015 (ISBN)

Mitra, P. P., Bokil, H. S. (2007) Observed Brain Dynamics. Oxford University Press, p. 408.

Video

Mitra, P. P. (November 2011) Talk from Partha Mitra at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)