Items where Subject is "amino acid design"

Paper

Bishop, L. A., Rahman, D., Pappin, D. J., Watt, F. M. (August 1995) Identification of an 80kD protein associated with the alpha 3 beta 1 integrin as a proteolytic fragment of the alpha 3 subunit: studies with human keratinocytes. Cell Adhes Commun, 3 (3). pp. 243-55. ISSN 1061-5385 (Print)1023-7046 (Linking)

Cano, Alejandro V, Rozhoňová, Hana, Stoltzfus, Arlin, McCandlish, David M, Payne, Joshua L (February 2022) Mutation bias shapes the spectrum of adaptive substitutions. Proceedings of the National Academy of Sciences of USA, 119 (7). e2119720119-e2119720119. ISSN 0027-8424

Cavanagh, D., Davis, P. J., Pappin, D. J., Binns, M. M., Boursnell, M. E., Brown, T. D. (February 1986) Coronavirus IBV: partial amino terminal sequencing of spike polypeptide S2 identifies the sequence Arg-Arg-Phe-Arg-Arg at the cleavage site of the spike precursor propolypeptide of IBV strains Beaudette and M41. Virus Res, 4 (2). pp. 133-43. ISSN 0168-1702 (Print)0168-1702 (Linking)

Cheng, X. (February 1995) DNA modification by methyltransferases. Curr Opin Struct Biol, 5 (1). pp. 4-10. ISSN 0959-440X (Print)

Cheng, X. (1995) Structure and function of DNA methyltransferases. Annu Rev Biophys Biomol Struct, 24. pp. 293-318. ISSN 1056-8700 (Print)

Chester, N., Yu, I. J., Marshak, D. R. (March 1995) Identification and characterization of protein kinase CKII isoforms in HeLa cells. Isoform-specific differences in rates of assembly from catalytic and regulatory subunits. J Biol Chem, 270 (13). pp. 7501-14. ISSN 0021-9258 (Print)

Cho, Y. H., Friedman, E., Silva, A. J. (January 1999) Ibotenate lesions of the hippocampus impair spatial learning but not contextual fear conditioning in mice. Behavioural Brain Research, 98 (1). pp. 77-87. ISSN 0166-4328 (Print)

Cleary, M. A., Herr, W. (April 1995) Mechanisms for flexibility in DNA sequence recognition and VP16-induced complex formation by the Oct-1 POU domain. Mol Cell Biol, 15 (4). pp. 2090-100. ISSN 0270-7306 (Print)

Conklin, D. S., Galaktionov, K., Beach, D. (August 1995) 14-3-3 proteins associate with cdc25 phosphatases. Proc Natl Acad Sci U S A, 92 (17). pp. 7892-6. ISSN 0027-8424 (Print)

Das, G., Hinkley, C. S., Herr, W. (April 1995) Basal promoter elements as a selective determinant of transcriptional activator function. Nature, 374 (6523). pp. 657-60. ISSN 0028-0836 (Print)

Davey, S., Beach, D. (October 1995) RACH2, a novel human gene that complements a fission yeast cell cycle checkpoint mutation. Mol Biol Cell, 6 (10). pp. 1411-21. ISSN 1059-1524 (Print)

Di Como, C. J., Bose, R., Arndt, K. T. (January 1995) Overexpression of SIS2, which contains an extremely acidic region, increases the expression of SWI4, CLN1 and CLN2 in sit4 mutants. Genetics, 139 (1). pp. 95-107. ISSN 0016-6731 (Print)

Doseff, A. I., Arndt, K. T. (November 1995) LAS1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth. Genetics, 141 (3). pp. 857-71. ISSN 0016-6731 (Print)

Evans, R. M., Parkin, A., Roessler, M. M., Murphy, B. J., Adamson, H., Lukey, M. J., Sargent, F., Volbeda, A., Fontecilla-Camps, J. C., Armstrong, F. A. (February 2013) Principles of sustained enzymatic hydrogen oxidation in the presence of oxygen--the crucial influence of high potential Fe-S clusters in the electron relay of [NiFe]-hydrogenases. J Am Chem Soc, 135 (7). pp. 2694-707. ISSN 1520-5126

Fawell, S. E., Pappin, D. J., McDonald, C. J., Higgins, S. J. (May 1986) Androgen-regulated proteins of rat seminal vesicle secretion constitute a structurally related family present in the copulatory plug. Mol Cell Endocrinol, 45 (2-3). pp. 205-13. ISSN 0303-7207 (Print)0303-7207 (Linking)

Ford, E., Strubin, M., Hernandez, N. (November 1998) The Oct-1 POU domain activates snRNA gene transcription by contacting a region in the SNAPc largest subunit that bears sequence similarities to the Oct-1 coactivator OBF-1. Genes and Development, 12 (22). pp. 3528-40. ISSN 08909369 (ISSN)

Fraser, A. G., James, C., Evan, G. I., Hengartner, M. O. (March 1999) Caenorhabditis elegans inhibitor of apoptosis protein (IAP) homologue BIR-1 plays a conserved role in cytokinesis. Current Biology, 9 (6). pp. 292-301. ISSN 0960-9822 (Print)

Fulcher, I. S., Pappin, D. J., Kenny, A. J. (November 1986) The N-terminal amino acid sequence of pig kidney endopeptidase-24.11 shows homology with pro-sucrase-isomaltase. Biochem J, 240 (1). pp. 305-8. ISSN 0264-6021 (Print)0264-6021 (Linking)

Galaktionov, K., Jessus, C., Beach, D. (May 1995) Raf1 interaction with Cdc25 phosphatase ties mitogenic signal transduction to cell cycle activation. Genes Dev, 9 (9). pp. 1046-58. ISSN 0890-9369 (Print)

Geng, F., Tansey, W. P. (2008) Polyubiquitylation of Histone H2B. Mol Biol Cell, 19 (9). pp. 3616-3284.

Gimona, M., Watakabe, A., Helfman, D. M. (October 1995) Specificity of dimer formation in tropomyosins: influence of alternatively spliced exons on homodimer and heterodimer assembly. Proc Natl Acad Sci U S A, 92 (21). pp. 9776-80. ISSN 0027-8424 (Print)

Gong, W., O'Gara, M., Blumenthal, R. M., Cheng, X. (July 1997) Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment. Nucleic Acids Research, 25 (14). pp. 2702-15. ISSN 0305-1048

Green, S. R., Manche, L., Mathews, M. B. (January 1995) Two functionally distinct RNA-binding motifs in the regulatory domain of the protein kinase DAI. Mol Cell Biol, 15 (1). pp. 358-64. ISSN 0270-7306 (Print)

Greenberg, M., DeTulleo, L., Rapoport, I., Skowronski, J., Kirchhausen, T. (November 1998) A dileucine motif in HIV-1 Nef is essential for sorting into clathrin-coated pits and for downregulation of CD4. Current Biology, 8 (22). pp. 1239-42. ISSN 0960-9822

Hanley, S. Z., Pappin, D. J., Rahman, D., White, A. J., Elborough, K. M., Slabas, A. R. (March 1999) Re-evaluation of the primary structure of Ralstonia eutropha phasin and implications for polyhydroxyalkanoic acid granule binding. FEBS Letters, 447 (1). pp. 99-105. ISSN 0014-5793 (Print)0014-5793 (Linking)

Henry, R. W., Ford, E., Mital, R., Mittal, V., Hernandez, N. (1998) Crossing the line between RNA polymerases: transcription of human snRNA genes by RNA polymerases II and III. Cold Spring Harbor Symposia on Quantitative Biology, 63. pp. 111-20. ISSN 00917451 (ISSN)

Henry, R. W., Sadowski, C. L., Kobayashi, R., Hernandez, N. (April 1995) A TBP-TAF complex required for transcription of human snRNA genes by RNA polymerase II and III. Nature, 374 (6523). pp. 653-6. ISSN 0028-0836 (Print)

Hernandez, A., Lyon, G. J., Schneider, M. J., St Germain, D. L. (1999) Isolation and characterization of the mouse gene for the type 3 iodothyronine deiodinase. Endocrinology, 140 (1). pp. 124-130. ISSN 0013-7227

Herr, W., Cleary, M. A. (July 1995) The POU domain: versatility in transcriptional regulation by a flexible two-in-one DNA-binding domain. Genes Dev, 9 (14). pp. 1679-93. ISSN 0890-9369 (Print)

Hirano, M., Hirano, T. (December 1998) ATP-dependent aggregation of single-stranded DNA by a bacterial SMC homodimer. Embo Journal, 17 (23). pp. 7139-48. ISSN 0261-4189

Huang, H., Tudor, M., Weiss, C. A., Hu, Y., Ma, H. (June 1995) The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol Biol, 28 (3). pp. 549-67. ISSN 0167-4412 (Print)

Karimi-Busheri, F., Daly, G., Robins, P., Canas, B., Pappin, D. J., Sgouros, J., Miller, G. G., Fakhrai, H., Davis, E. M., Le Beau, M. M., Weinfeld, M. (August 1999) Molecular characterization of a human DNA kinase. Journal of Biological Chemistry, 274 (34). pp. 24187-94. ISSN 0021-9258 (Print)0021-9258 (Linking)

Keen, Jeffrey N., Pappin, Darryl J. C., Evans, Leonard V. (1988) Amino Acid Sequence Analysis Of The Small Subunit Of Ribulose Bisphosphate Carboxylase From Fucus (Phaeophyceae)1. Journal of Phycology, 24 (3). pp. 324-327. ISSN 1529-8817

Lahooti, H., White, R., Hoare, S. A., Rahman, D., Pappin, D. J., Parker, M. G. (December 1995) Identification of phosphorylation sites in the mouse oestrogen receptor. J Steroid Biochem Mol Biol, 55 (3-4). pp. 305-13. ISSN 0960-0760 (Print)0960-0760 (Linking)

Lin, F. C., Arndt, K. T. (June 1995) The role of Saccharomyces cerevisiae type 2A phosphatase in the actin cytoskeleton and in entry into mitosis. Embo J, 14 (12). pp. 2745-59. ISSN 0261-4189 (Print)

Liu, Y., Gong, W., Huang, C. C., Herr, W., Cheng, X. (July 1999) Crystal structure of the conserved core of the herpes simplex virus transcriptional regulatory protein VP16. Genes and Development, 13 (13). pp. 1692-703. ISSN 0890-9369 (Print)

Liu, Y., Hengartner, M. O., Herr, W. (January 1999) Selected elements of herpes simplex virus accessory factor HCF are highly conserved in Caenorhabditis elegans. Molecular and Cellular Biology, 19 (1). pp. 909-15. ISSN 0270-7306 (Print)

Lukey, M. J., Roessler, M. M., Parkin, A., Evans, R. M., Davies, R. A., Lenz, O., Friedrich, B., Sargent, F., Armstrong, F. A. (October 2011) Oxygen-tolerant [NiFe]-hydrogenases: the individual and collective importance of supernumerary cysteines at the proximal Fe-S cluster. J Am Chem Soc, 133 (42). pp. 16881-92. ISSN 1520-5126

Malone, T., Blumenthal, R. M., Cheng, X. (November 1995) Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes. J Mol Biol, 253 (4). pp. 618-32. ISSN 0022-2836 (Print)

Mariani, R., Kirchhoff, F., Greenough, T. C., Sullivan, J. L., Desrosiers, R. C., Skowronski, J. (November 1996) High frequency of defective nef alleles in a long-term survivor with nonprogressive human immunodeficiency virus type 1 infection. Journal of Virology, 70 (11). pp. 7752-64. ISSN 0022-538X

Mason, G. G., Murray, R. Z., Pappin, D., Rivett, A. J. (July 1998) Phosphorylation of ATPase subunits of the 26S proteasome. FEBS Letters, 430 (3). pp. 269-74. ISSN 0014-5793 (Print)0014-5793 (Linking)

Mittal, V., Hernandez, N. (February 1997) Role for the amino-terminal region of human TBP in U6 snRNA transcription. Science, 275 (5303). pp. 1136-40. ISSN 0036-8075 (Print)

Neuwald, A. F. (February 1999) The hexamerization domain of N-ethylmaleimide-sensitive factor: structural clues to chaperone function. Structure, 7 (2). R19-23. ISSN 0969-2126 (Print)

Neuwald, A. F., Aravind, L., Spouge, J. L., Koonin, E. V. (January 1999) AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Research, 9 (1). pp. 27-43. ISSN 1088-9051 (Print)

O'Gara, M., McCloy, K., Malone, T., Cheng, X. (May 1995) Structure-based sequence alignment of three AdoMet-dependent DNA methyltransferases. Gene, 157 (1-2). pp. 135-8. ISSN 0378-1119 (Print)

Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S. (December 1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20 (18). pp. 3551-67. ISSN 0173-0835 (Print)0173-0835 (Linking)

Quelle, D. E., Ashmun, R. A., Hannon, G. J., Rehberger, P. A., Trono, D., Richter, K. H., Walker, C., Beach, D., Sherr, C. J., Serrano, M. (1995) Cloning and characterization of murine p16(INK4a) and p15(INK4b) genes. Oncogene, 11 (4). pp. 635-645. ISSN 09509232 (ISSN)

Rajan, I., Cline, H. T. (October 1998) Glutamate receptor activity is required for normal development of tectal cell dendrites in vivo. Journal of Neuroscience, 18 (19). pp. 7836-46. ISSN 0270-6474 (Print)

Regulski, M., Tully, T. (September 1995) Molecular and biochemical characterization of dNOS: a Drosophila Ca2+/calmodulin-dependent nitric oxide synthase. Proc Natl Acad Sci U S A, 92 (20). pp. 9072-6. ISSN 0027-8424 (Print)

Salghetti, S., Mariani, R., Skowronski, J. (January 1995) Human immunodeficiency virus type 1 Nef and p56lck protein-tyrosine kinase interact with a common element in CD4 cytoplasmic tail. Proc Natl Acad Sci U S A, 92 (2). pp. 349-53. ISSN 0027-8424 (Print)

Schmedt, C., Green, S. R., Manche, L., Taylor, D. R., Ma, Y., Mathews, M. B. (May 1995) Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR). Journal of Molecular Biology, 249 (1). pp. 29-44. ISSN 0022-2836

Shewry, P. R., Parmar, S., Pappin, D. J. (April 1987) Characterization and genetic control of the prolamins of Haynaldia villosa: relationship to cultivated species of the Triticeae (rye, wheat, and barley). Biochem Genet, 25 (3-4). pp. 309-25. ISSN 0006-2928 (Print)0006-2928 (Linking)

Shewry, P. R., Tatham, A. S., Pappin, D. J., Keen, J. (November 1988) N-terminal amino-acid sequences show that D-hordein of barley and high molecular-weight (HMW) secalins of rye are homologous with HMW glutenin subunits of wheat. Cereal Chemistry, 65 (6). pp. 510-511. ISSN 0009-0352

Spengler, B., Luetzenkirchen, F., Metzger, S., Chaurand, P., Kaufmann, R., Jeffery, W., Bartlet-Jones, M., Pappin, D. J. C. (1997) Peptide sequencing of charged derivatives by postsource decay MALDI mass spectrometry. International Journal of Mass Spectrometry and Ion Processes, 169-17. pp. 127-140. ISSN 01681176 (ISSN)

Sturm, R. A., Das, G., Herr, W. (December 1988) The ubiquitous octamer-binding protein Oct-1 contains a POU domain with a homeo box subdomain. Genes Dev, 2 (12A). pp. 1582-99. ISSN 0890-9369

Tegay, D. H., Lane, A. H., Roohi, J., Hatchwell, E. (March 2007) Contiguous gene deletion involving L1CAM and AVPR2 causes X-linked hydrocephalus with nephrogenic diabetes insipidus. American Journal of Medical Genetics Part A, 143A (6). pp. 594-598. ISSN 1552-4825

Temm-Grove, C. J., Guo, W., Helfman, D. M. (1996) Low molecular weight rat fibroblast tropomyosin 5 (TM-5): cDNA cloning, actin-binding, localization, and coiled-coil interactions. Cell Motility and the Cytoskeleton, 33 (3). pp. 223-40. ISSN 0886-1544 (Print)

Wei, Y. F., Robins, P., Carter, K., Caldecott, K., Pappin, D. J., Yu, G. L., Wang, R. P., Shell, B. K., Nash, R. A., Schar, P. (June 1995) Molecular cloning and expression of human cDNAs encoding a novel DNA ligase IV and DNA ligase III, an enzyme active in DNA repair and recombination. Mol Cell Biol, 15 (6). pp. 3206-16. ISSN 0270-7306 (Print)0270-7306 (Linking)

Wilson, A. C., Peterson, M. G., Herr, W. (October 1995) The HCF repeat is an unusual proteolytic cleavage signal. Genes Dev, 9 (20). pp. 2445-58. ISSN 0890-9369 (Print)

Wong, M. W., Henry, R. W., Ma, B., Kobayashi, R., Klages, N., Matthias, P., Strubin, M., Hernandez, N. (January 1998) The large subunit of basal transcription factor SNAPc is a Myb domain protein that interacts with Oct-1. Molecular and Cellular Biology, 18 (1). pp. 368-77. ISSN 0270-7306 (Print)

Xu, R. M., Carmel, G., Kuret, J., Cheng, X. (June 1996) Structural basis for selectivity of the isoquinoline sulfonamide family of protein kinase inhibitors. Proceedings of the National Academy of Sciences of the United States of America, 93 (13). pp. 6308-13. ISSN 0027-8424

Young, J. D., Lawrence, A. J., MacLean, A. G., Leung, B. P., McInnes, I. B., Canas, B., Pappin, D. J., Stevenson, R. D. (December 1999) Thymosin beta 4 sulfoxide is an anti-inflammatory agent generated by monocytes in the presence of glucocorticoids. Nature Medicine, 5 (12). pp. 1424-7. ISSN 1078-8956 (Print)1078-8956 (Linking)

Zhang, H., Kobayashi, R., Galaktionov, K., Beach, D. (September 1995) p19Skp1 and p45Skp2 are essential elements of the cyclin A-CDK2 S phase kinase. Cell, 82 (6). pp. 915-25. ISSN 0092-8674 (Print)

van Ham, S. M., Tjin, E. P., Lillemeier, B. F., Gruneberg, U., van Meijgaarden, K. E., Pastoors, L., Verwoerd, D., Tulp, A., Canas, B., Rahman, D., Ottenhoff, T. H., Pappin, D. J., Trowsdale, J., Neefjes, J. (December 1997) HLA-DO is a negative modulator of HLA-DM-mediated MHC class II peptide loading. Curr Biol, 7 (12). pp. 950-7. ISSN 0960-9822 (Print)0960-9822 (Linking)

Book Section

Bures, E. J., Nika, H., Chow, D. T., Hess, D., Morrison, H. D., Bartlet-Jones, M., Pappin, D. J., Aebersold, R. (1995) Synthesis, evaluation, and application of a panel of novel reagents for stepwise degradation of proteins. In: Methods in Protein Structure Analysis. Plenum Publishing Corp, New York.