Items where Subject is "Investigative techniques and equipment > imaging"

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Paper

Abdeladim, L., Matho, K. S., Clavreul, S., Mahou, P., Sintes, J. M., Solinas, X., Arganda-Carreras, I., Turney, S. G., Lichtman, J. W., Chessel, A., Bemelmans, A. P., Loulier, K., Supatto, W., Livet, J., Beaurepaire, E. (April 2019) Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy. Nat Commun, 10 (1). p. 1662. ISSN 2041-1723

Abdeladim, L., Matho, K. S., Clavreul, S., Mahou, P., Sintes, J. M., Solinas, X., Arganda-Carreras, I., Turney, S. G., Lichtman, J. W., Chessel, A., Bemelmans, A. P., Loulier, K., Supatto, W., Livet, J., Beaurepaire, E. (May 2019) Publisher Correction: Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy. Nat Commun, 10 (1). p. 2160. ISSN 2041-1723

Bilan, D. S., Matlashov, M. E., Gorokhovatsky, A. Y., Schultz, C., Enikolopov, G. N., Belousov, V. V. (July 2013) Genetically encoded fluorescent indicator for NAD(+)/NADH ratio imaging in different cellular compartments. Febs Journal, 280 (S1). p. 615. ISSN 1742-464X

Bilan, Dmitry S., Matlashov, Mikhail E., Gorokhovatsky, Andrey Yu, Schultz, Carsten, Enikolopov, Grigori, Belousov, Vsevolod V. (January 2014) Genetically encoded fluorescent indicator for imaging NAD+/NADH ratio changes in different cellular compartments. Biochimica et Biophysica Acta (BBA) - General Subjects, 1840 (3). pp. 951-957. ISSN 0304-4165

Cantallops, I., Cline, H. T. (May 2008) Rapid activity-dependent delivery of the neurotrophic protein CPG15 to the axon surface of neurons in intact Xenopus tadpoles. Dev Neurobiol, 68 (6). pp. 744-759.

Chen, B. E., Lendvai, B., Nimchinsky, E. A., Burbach, B., Fox, K., Svoboda, K. (November 2000) Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo. Learning & Memory, 7 (6). pp. 433-441. ISSN 1072-0502

Cline, H. T., Haas, K. (March 2008) The regulation of dendritic arbor development and plasticity by glutamatergic synaptic input: a review of the synaptotrophic hypothesis. J Physiol, 586 (6). pp. 1509-1517.

Egeblad, M., Ewald, A. J., Askautrud, H. A., Truitt, M. L., Welm, B. E., Bainbridge, E., Peeters, G., Krummel, M. F., Werb, Z. (2008) Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy. Disease Models and Mechanisms, 1 (2-3). pp. 155-167. ISSN 17548403 (ISSN)

Egeblad, M., Nakasone, E., Askautrud, H., Wysocki, R., Fein, M., Kees, T., Park, J., Park, J. H. (November 2014) Understanding drug responses and resistance mechanisms using imaging in live mice. Molecular Cancer Research, 12 (Supple). ISSN 1541-7786

Ellegood, J., Anagnostou, E., Babineau, B. A., Crawley, J. N., Lin, L., Genestine, M., DiCicco-Bloom, E., Lai, J. K., Foster, J. A., Penagarikano, O., Geschwind, D. H., Pacey, L. K., Hampson, D. R., Laliberte, C. L., Mills, A. A., Tam, E., Osborne, L. R., Kouser, M., Espinosa-Becerra, F., Xuan, Z., Powell, C. M., Raznahan, A., Robins, D. M., Nakai, N., Nakatani, J., Takumi, T., van Eede, M. C., Kerr, T. M., Muller, C., Blakely, R. D., Veenstra-VanderWeele, J., Henkelman, R. M., Lerch, J. P. (February 2015) 3D visualization of the regional differences. Mol Psychiatry, 20 (1). p. 1. ISSN 1359-4184

Ermakova, Y. G., Bilan, D. S., Mishina, N., Markvicheva, K. N., Enikolopov, G., Belousov, V. V. (July 2013) Genetically encoded red fluorescent probe for intracellular H2O2 detection. Febs Journal, 280 (S1). pp. 606-607. ISSN 1742-464X

Ewald, A. J., Werb, Z., Egeblad, M. (February 2011) Dynamic, Long-Term In Vivo Imaging of Tumor–Stroma Interactions in Mouse Models of Breast Cancer Using Spinning-Disk Confocal Microscopy. Cold Spring Harbor Protocols, 2011 (2).

Ewald, A. J., Werb, Z., Egeblad, M. (February 2011) Preparation of mice for long-term intravital imaging of the mammary gland. Cold Spring Harbor Protocols, 2011 (2). ISSN 1559-6095

Fang, Y., Spector, D. L. (2010) BiFC imaging assay for plant protein-protein interactions. Cold Spring Harbor Protocols, 2010 (2). ISSN 1559-6095

Fein, M. R., Egeblad, M. (May 2013) Caught in the act: revealing the metastatic process by live imaging. Disease Models and Mechanisms, 6 (3). pp. 580-93. ISSN 1754-8411 (Electronic)1754-8403 (Linking)

Giovannucci, A., Friedrich, J., Kaufman, M., Churchland, A. K., Chklovskii, D., Paninski, L., Pnevmatikakis, E. A. (December 2017) OnACID: Online analysis of calcium imaging data in real time. 31st Annual Conference on Neural Information Processing Systems, NIPS 2017;, 2017-D. pp. 2382-2392. ISSN 10495258

Gurden, H., Uchida, N., Mainen, Z. F. (October 2006) Sensory-evoked intrinsic optical signals in the olfactory bulb are coupled to glutamate release and uptake. Neuron, 52 (2). pp. 335-45. ISSN 0896-6273 (Print)

Henn, F. A., Braus, D. F. (1999) Structural neuroimaging in schizophrenia. An integrative view of neuromorphology. European Archives of Psychiatry and Clinical Neuroscience, 249 Su. pp. 48-56. ISSN 0940-1334 (Print)0940-1334 (Linking)

Holtmaat, A., Bonhoeffer, T., Chow, D. K., Chuckowree, J., De Paola, V., Hofer, S. B., Hubener, M., Keck, T., Knott, G., Lee, W. C., Mostany, R., Mrsic-Flogel, T. D., Nedivi, E., Portera-Cailliau, C., Svoboda, K., Trachtenberg, J. T., Wilbrecht, L. (July 2009) Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nat Protoc, 4 (8). pp. 1128-44. ISSN 1750-2799 (Electronic)

Holtmaat, A., De Paola, V., Wilbrecht, L., Knott, G. W. (September 2008) Imaging of experience-dependent structural plasticity in the mouse neocortex in vivo. Behav Brain Res, 192 (1). pp. 20-25.

Honegger, K. S., Turner, G. C., Campbell, R. A. (December 2012) Functional imaging of population coding in olfaction: linking neural activity to perception. Journal of Neurogenetics, 26. p. 64. ISSN 0167-7063

Hsieh, T. C., Mensah, M. A., Pantel, J. T., Aguilar, D., Bar, O., Bayat, A., Becerra-Solano, L., Bentzen, H. B., Biskup, S., Borisov, O., Braaten, O., Ciaccio, C., Coutelier, M., Cremer, K., Danyel, M., Daschkey, S., Eden, H. D., Devriendt, K., Wilson, S., Douzgou, S., Dukic, D., Ehmke, N., Fauth, C., Fischer-Zirnsak, B., Fleischer, N., Gabriel, H., Graul-Neumann, L., Gripp, K. W., Gurovich, Y., Gusina, A., Haddad, N., Hajjir, N., Hanani, Y., Hertzberg, J., Hoertnagel, K., Howell, J., Ivanovski, I., Kaindl, A., Kamphans, T., Kamphausen, S., Karimov, C., Kathom, H., Keryan, A., Knaus, A., Kohler, S., Kornak, U., Lavrov, A., Leitheiser, M., Lyon, G. J., Mangold, E., Reina, P. M., Carrascal, A. M., Mitter, D., Herrador, L. M., Nadav, G., Nothen, M., Orrico, A., Ott, C. E., Park, K., Peterlin, B., Polsler, L., Raas-Rothschild, A., Randolph, L., Revencu, N., Fagerberg, C. R., Robinson, P. N., Rosnev, S., Rudnik, S., Rudolf, G., Schatz, U., Schossig, A., Schubach, M., Shanoon, O., Sheridan, E., Smirin-Yosef, P., Spielmann, M., Suk, E. K., Sznajer, Y., Thiel, C. T., Thiel, G., Verloes, A., Vrecar, I., Wahl, D., Weber, I., Winter, K., Wisniewska, M., Wollnik, B., Yeung, M. W., Zhao, M., Zhu, N., Zschocke, J., Mundlos, S., Horn, D., Krawitz, P. M. (June 2019) PEDIA: prioritization of exome data by image analysis. Genet Med. ISSN 1098-3600

Jang, Woo-Sik, Koo, Peter, Bryson, Kyle, Narayanan, Suresh, Sandy, Alec R., Russell, Thomas P., Mochrie, Simon G. (2016) The Static Structure and Dynamics of Cadmium Sulfide Nanoparticles within Poly(styrene-block-isoprene) Diblock Copolymer Melts. Macromolecular Chemistry and Physics, 217 (4). pp. 591-598. ISSN 1022-1352

Janicki, S. M., Tsukamoto, T., Spector, D. L. (November 2002) Live-cell visualization of the dynamics of chromatin associated factors during the transition from a transcriptionally inactive to an active state. Molecular Biology of the Cell, 13. 238A-238A. ISSN 1059-1524

Karten, H. J., Brzozowska-Prechtl, A., Lovell, P. V., Tang, D. D., Mello, C. V., Wang, H., Mitra, P. P. (November 2013) Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas. Journal of Comparative Neurology, 521 (16). pp. 3702-15. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)

Kemper, E. M., Leenders, W., Kusters, B., Lyons, S., Buckle, T., Heerschap, A., Boogerd, W., Beijnen, J. H., van Tellingen, O. (December 2006) Development of luciferase tagged brain tumour models in mice for chemotherapy intervention studies. Eur J Cancer, 42 (18). pp. 3294-303. ISSN 0959-8049 (Print)0959-8049 (Linking)

Kleinfeld, D., Mitra, P. P. (March 2014) Spectral methods for functional brain imaging. Cold Spring Harbor Protocols, 2014 (3). pp. 248-62. ISSN 1559-6095

Koh, I. Y. Y., Lindquist, W. B., Zito, K., Nimchinsky, E. A., Svoboda, K. (June 2002) An image analysis algorithm for dendritic spines. Neural Computation, 14 (6). pp. 1283-1310. ISSN 0899-7667

Koo, P. K., Setru, S. U., Mochrie, S. G. (October 2013) Active drift stabilization in three dimensions via image cross-correlation. Rev Sci Instrum, 84 (10). p. 103705. ISSN 0034-6748

Koo, P. K., Setru, S. U., Mochrie, S. G. (August 2016) Erratum: "Active drift stabilization in three dimensions via image cross-correlation" [Rev. Sci. Instrum. 84, 103705 (2013)]. Rev Sci Instrum, 87 (8). 089901. ISSN 0034-6748

Krishnakumar, V., Choi, Y., Beck, E., Wu, Q., Luo, A., Sylvester, A., Jackson, D., Chan, A. P. (November 2015) A Maize Database Resource that Captures Tissue-Specific and Subcellular-Localized Gene Expression, via Fluorescent Tags and Confocal Imaging. (Maize Cell Genomics Database). Plant & cell physiology, 56 (1). e12. ISSN 0032-0781

Llinas, R. R., Ribary, U., Jeanmonod, D., Kronberg, E., Mitra, P. P. (December 1999) Thalamocortical dysrhythmia: A neurological and neuropsychiatric syndrome characterized by magnetoencephalography. Proceedings of the National Academy of Sciences, 96 (26). pp. 15222-15227.

Lyons, S. K. (January 2005) Advances in imaging mouse tumour models in vivo. J Pathol, 205 (2). pp. 194-205. ISSN 0022-3417 (Print)0022-3417 (Linking)

Lyons, S. K. (May 2015) Imaging Mouse Models of Cancer. Cancer J, 21 (3). pp. 152-164. ISSN 1540-336X (Electronic)1528-9117 (Linking)

Lyons, S. K. (February 2015) The development and imaging of advanced cancer models. Journal of Nuclear Medicine, 56 (2). p. 25. ISSN 0161-5505

Lyons, S. K., Lim, E., Clermont, A. O., Dusich, J., Zhu, L., Campbell, K. D., Coffee, R. J., Grass, D. S., Hunter, J., Purchio, T., Jenkins, D. (May 2006) Noninvasive bioluminescence imaging of normal and spontaneously transformed prostate tissue in mice. Cancer Res, 66 (9). pp. 4701-7. ISSN 0008-5472 (Print)0008-5472 (Linking)

Lyons, S. K., Meuwissen, R., Krimpenfort, P., Berns, A. (November 2003) The generation of a conditional reporter that enables bioluminescence imaging of Cre/loxP-dependent tumorigenesis in mice. Cancer Res, 63 (21). pp. 7042-6. ISSN 0008-5472 (Print)0008-5472 (Linking)

Lyons, S. K., Patrick, P. S., Brindle, K. M. (August 2013) Imaging mouse cancer models in vivo using reporter transgenes. Cold Spring Harb Protoc, 2013 (8). pp. 685-99. ISSN 1559-6095 (Electronic)1559-6095 (Linking)

Maravall, M., Mainen, Z. F., Sabatini, B. L., Svoboda, K. (May 2000) Estimating intracellular calcium concentrations and buffering without wavelength ratioing. Biophysical Journal, 78 (5). pp. 2655-2667. ISSN 0006-3495

Mirrione, M. M., Schulz, D., Lapidus, K. A., Zhang, S., Goodman, W., Henn, F. A. (2014) Increased metabolic activity in the septum and habenula during stress is linked to subsequent expression of learned helplessness behavior. Frontiers in Human Neuroscience, 8. p. 29. ISSN 1662-5161

Nakasone, E., Askautrud, H., Kees, T., Park, J., Fein, M., Egeblad, M. (February 2013) Imaging contributions of the microenvironment to chemoresistance. Journal of Nuclear Medicine, 54 (Supple). p. 31. ISSN 0161-5505

Nakasone, E. S., Askautrud, H. A., Egeblad, M. (2013) Live imaging of drug responses in the tumor microenvironment in mouse models of breast cancer. Journal of Visualized Experiments (73). ISSN 1940-087X (Electronic)1940-087X (Linking)

O'Neill, K., Lyons, S. K., Gallagher, W. M., Curran, K. M., Byrne, A. T. (February 2010) Bioluminescent imaging: a critical tool in pre-clinical oncology research. J Pathol, 220 (3). pp. 317-27. ISSN 1096-9896 (Electronic)0022-3417 (Linking)

Oertner, T. G. (November 2002) Functional imaging of single synapses in brain slices. Experimental Physiology, 87 (6). pp. 733-736. ISSN 0958-0670

Oertner, T. G., Sabatini, B. L., Nimchinsky, E. A., Svoboda, K. (July 2002) Facilitation at single synapses probed with optical quantal analysis. Nature Neuroscience, 5 (7). pp. 657-664. ISSN 1097-6256

Patrick, P. S., Hammersley, J., Loizou, L., Kettunen, M. I., Rodrigues, T. B., Hu, D. E., Tee, S. S., Hesketh, R., Lyons, S. K., Soloviev, D., Lewis, D. Y., Aime, S., Fulton, S. M., Brindle, K. M. (January 2014) Dual-modality gene reporter for in vivo imaging. Proc Natl Acad Sci U S A, 111 (1). pp. 415-20. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Patrick, P. S., Lyons, S. K., Rodrigues, T. B., Brindle, K. M. (October 2014) Oatp1 enhances bioluminescence by acting as a plasma membrane transporter for D-luciferin. Mol Imaging Biol, 16 (5). pp. 626-34. ISSN 1860-2002 (Electronic)1536-1632 (Linking)

Patterson, S. D., Latter, G. I. (December 1993) Evaluation of storage phosphor imaging for quantitative analysis of 2-D gels using the Quest II system. Biotechniques, 15 (6). pp. 1076-83. ISSN 0736-6205 (Print)

Ragan, T., Kadiri, L. R., Venkataraju, K. U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H. S., Osten, P. (March 2012) Serial two-photon tomography for automated ex vivo mouse brain imaging. Nature Methods, 9 (3). pp. 255-258. ISSN 15487091 (ISSN)

Rehberg, M., Lepier, A., Solchenberger, B., Osten, P., Blum, R. (October 2008) A new non-disruptive strategy to target calcium indicator dyes to the endoplasmic reticulum. Cell Calcium, 44 (4). pp. 386-99. ISSN 0143-4160 (Print)

Rey-Suarez, Ivan, Wheatley, Brittany, Koo, Peter, Shu, Zhou, Mochrie, Simon, Song, Wenxia, Shroff, Hari, Upadhyaya, Arpita (2019) N-WASP regulates the mobility of the B cell receptor and co-receptors during signaling activation. bioRxiv. p. 619627. (Unpublished)

Ruthazer, E. S., Cline, H. T. (June 2002) Multiphoton imaging of neurons in living tissue: Acquisition and analysis of time-lapse morphological data. Real-Time Imaging, 8 (3). pp. 175-188. ISSN 1077-2014

Shuvaev, S. A., Lazutkin, A. A., Kedrov, A. V., Anokhin, K. V., Enikolopov, G. N., Koulakov, A. A. (2017) DALMATIAN: An Algorithm for Automatic Cell Detection and Counting in 3D. Front Neuroanat, 11. p. 117. ISSN 1662-5129 (Print)1662-5129

Svoboda, K., Yasuda, R., Sabatini, B. (February 2003) Using [Ca2+] imaging to probe synaptic channels at the level of single molecules. Biophysical Journal, 84 (2). 479A-479A. ISSN 0006-3495

Tost, H., Ende, G., Ruf, M., Henn, F. A., Meyer-Lindenberg, A. (2005) Functional imaging research in schizophrenia. Int Rev Neurobiol, 67. pp. 95-118. ISSN 0074-7742 (Print)0074-7742

Trachtenberg, J. T., Chen, B. E., Knott, G. W., Feng, G. P., Sanes, J. R., Welker, E., Svoboda, K. (December 2002) Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature, 420 (6917). pp. 788-794. ISSN 0028-0836

Vooijs, M., Jonkers, J., Lyons, S., Berns, A. (March 2002) Noninvasive imaging of spontaneous retinoblastoma pathway-dependent tumors in mice. Cancer Res, 62 (6). pp. 1862-7. ISSN 0008-5472 (Print)0008-5472 (Linking)

Wang, L., Uilecan, I. V., Assadi, A. H., Kozmik, C. A., Spalding, E. P. (April 2009) HYPOTrace: Image Analysis Software for Measuring Hypocotyl Growth and Shape Demonstrated on Arabidopsis Seedlings Undergoing Photomorphogenesis. Plant Physiol., 149 (4). pp. 1632-1637.

Wu, G. Y., Cline, H. T. (May 2003) Time-lapse in vivo imaging of the morphological development of Xenopus optic tectal interneurons. Journal of Comparative Neurology, 459 (4). pp. 392-406. ISSN 1096-9861 (Electronic) 0021-9967 (Linking)

Wu, X., Fu, Y., Knott, G., Lu, J., Di Cristo, G., Huang, Z. J. (January 2012) GABA Signaling Promotes Synapse Elimination and Axon Pruning in Developing Cortical Inhibitory Interneurons. Journal of Neuroscience, 32 (1). pp. 331-43. ISSN 0270-6474

Zeamari, S., Rumping, G., Floot, B., Lyons, S., Stewart, F. A. (March 2004) In vivo bioluminescence imaging of locally disseminated colon carcinoma in rats. Br J Cancer, 90 (6). pp. 1259-64. ISSN 0007-0920 (Print)0007-0920 (Linking)

Zhang, N., Lyons, S., Lim, E., Lassota, P. (August 2009) A spontaneous acinar cell carcinoma model for monitoring progression of pancreatic lesions and response to treatment through noninvasive bioluminescence imaging. Clin Cancer Res, 15 (15). pp. 4915-24. ISSN 1078-0432 (Print)1078-0432 (Linking)

Zhao, Y., Schreiner, S. M., Koo, P. K., Colombi, P., King, M. C., Mochrie, S. G. (July 2016) Improved Determination of Subnuclear Position Enabled by Three-Dimensional Membrane Reconstruction. Biophys J, 111 (1). pp. 19-24. ISSN 0006-3495

Book Section

Chen, B., Trachtenberg, J.T., Holtmaat, A. J., Svoboda, K. (2005) Long-term, high-resolution imaging in the neocortex in vivo. In: Live cell imaging: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 423-424. ISBN 0879696826

Ewald, A., Werb, Z., Egeblad, M. (2009) Dynamic, Long-Term, In Vivo Imaging of Tumor-Stroma Interactions in Mouse Models of Breast Cancer Using Spinning-Disk Confocal Microscopy. In: Live Cell Imaging: A Laboratory Manual, Second Edition. Cold Spring Harbor Laboratory Press, New York, pp. 419-439. ISBN 9780879698935

Lyons, S. K. (2008) Bioluminescence Imaging. In: Encyclopedia of Cancer. Springer. ISBN 978-3-540-47648-1

Lyons, Scott K., Brindle, Kevin M. (2010) Molecular Imaging of Cancer and the Implications for Pre-invasive Disease. In: Pre-Invasive Disease: Pathogenesis and Clinical Management. Springer New York, pp. 167-207. ISBN 978-1-4419-6693-3

Malinow, R., Hayashi, Y., Maletic-Savatic, M., Zaman, S. H., Poncer, J-C, Shi, S. H., Esteban, J. A. (1999) Introduction of green fluorescent protein into hippocampal neurons through viral infection. In: Imaging neurons : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN 0879695420

Conference or Workshop Item

Benfey, P., Carpenter, A., Waterston, W., Ohler, U. (December 2010) AUTOMATED IMAGING & HIGH-THROUGHPUT PHENOTYPING. In: 2010 meeting on Automated Imaging and high througput phenotyping, December 5–December 8, 2010, Cold Spring Harbor Laboratory.

Venkataraju, K. U., Gornet, J., Murugaiyan, G., Wu, Z., Osten, P. (February 2019) Development of brain templates for whole brain atlases. In: Neural Imaging and Sensing 2019, San Francisco, CA.

Book

Goldman, R. D., Spector, D. L. (2005) Live cell imaging : a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. ISBN 0879696834

Goldman, R. D., Swedlow, J. R., Spector, D. L. (2010) Live Cell Imaging: A Laboratory Manual. Cold Spring Harbor Laboratory Press. ISBN 9780879698935

Spector, D. L., Derby, R. J. (1990) Immunolocalization of nuclear antigens in cryofixed cells which have been prepared by molecular distillation drying or freeze-substitution. Electron Microscopy 1990: Proceedings of the XIIth International Congress for Electron Microscopy Held in Seattle, Washington, USA - 48th Annual Meeting of the Electron Microscopy Society of America and 25th Annual Meeting of the Microbeam Analysis Societ . San Francisco Press.

Video

Egeblad, M. (November 2011) Talk from Mikala Egeblad at the Cold Spring Harbor Laboratory In-House Symposium (2011). [Video] (Unpublished)

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