Items where Subject is "bioinformatics > genomics and proteomics > genetics & nucleic acid processing > DNA, RNA structure, function, modification > RNA expression"

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Number of items at this level: 48.

A

Albers, C., Illert, A. L., Leischner, H., Miething, C., Huss, R., Peschel, C., Duyster, J. (November 2010) A Single Retroviral Vector Design for the Simultaneous Expression of a Mir30 Based Shrna with An Oncogene - Identification of Raf 1 but Not BRAF as a Crucial Mediator for BCR ABL Mediated Leukemogenesis. Blood, 116 (21). p. 3392. ISSN 0006-4971

Autexier, C., Pruzan, R., Funk, W. D., Greider, C. W. (November 1996) Reconstitution of human telomerase activity and identification of a minimal functional region of the human telomerase RNA. Embo J, 15 (21). pp. 5928-35. ISSN 0261-4189 (Print)

Avilion, A. A., Harrington, L. A., Greider, C. W. (1992) Tetrahymena telomerase RNA levels increase during macronuclear development. Dev Genet, 13 (1). pp. 80-6. ISSN 0192-253X (Print)0192-253X (Linking)

Avilion, A. A., Piatyszek, M. A., Gupta, J., Shay, J. W., Bacchetti, S., Greider, C. W. (February 1996) Human telomerase RNA and telomerase activity in immortal cell lines and tumor tissues. Cancer Research, 56 (3). pp. 645-50. ISSN 0008-5472 (Print)

B

Baker, R. F., Leach, K. A., Boyer, N. R., Swyers, M. J., Benitez-Alfonso, Y., Skopelitis, T., Luo, A., Sylvester, A., Jackson, D., Braun, D. M. (November 2016) Sucrose transporter ZmSut1 expression and localization uncover new insights into sucrose phloem loading. Plant Physiol, 172 (3). pp. 1876-1898. ISSN 1532-2548 (Electronic)0032-0889 (Linking)

Bell, R. D., Long, X., Lin, M., Bergmann, J. H., Nanda, V., Cowan, S. L., Zhou, Q., Han, Y., Spector, D. L., Zheng, D., Miano, J. M. (February 2014) Identification and Initial Functional Characterization of a Human Vascular Cell-Enriched Long Noncoding RNA. Arteriosclerosis, thrombosis, and vascular biology, 34 (6). pp. 1249-1259. ISSN 1079-5642

Berezikov, E., Liu, N., Flynt, A. S., Hodges, E., Rooks, M., Hannon, G. J., Lai, E. C. (January 2010) Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nature Genetics, 42 (1). pp. 6-9. ISSN 1061-4036

Bernstein, Robert M., Bunn, Christopher C., Mathews, Michael B. (1985) Autoantibodies to Transfer Rna-Related Antigens in Myositis. In: Protides of the Biological Fluids. Elsevier, pp. 347-350. ISBN 0079-7065

Blasco, M. A., Rizen, M., Greider, C. W., Hanahan, D. (February 1996) Differential regulation of telomerase activity and telomerase RNA during multi-stage tumorigenesis. Nature Genetics, 12 (2). pp. 200-4. ISSN 1061-4036 (Print)

Breschi, A., Davis, C., Djebali, S., Gillis, J., Pervouchine, D. D., Vlasova, A., Dobin, A., Zaleski, C., Drenkow, J., Danyko, C., Scavelli, A., Munoz, M., Garrido, D., Reverter, F., Gingeras, T. R., Guigo, R. (March 2018) The molecular basis of the cellular taxonomy of the human body. Human Genomics, 12 (Supple). Meeting Abstract A107. ISSN 1473-9542

C

Chakrabortty, S. K., Prakash, A., Nechooshtan, G., Hearn, S., Gingeras, T. R. (November 2015) Extracellular vesicle-mediated transfer of processed and functional RNY5 RNA. RNA, 21 (11). pp. 1966-1979. ISSN 1469-9001 (Electronic)1355-8382 (Linking)

Chandran, D., Scanlon, M. J., Ohtsu, K., Timmermans, M. C., Schnable, P. S., Wildermuth, M. C. (October 2015) Laser Microdissection-Mediated Isolation and In Vitro Transcriptional Amplification of Plant RNA. Curr Protoc Mol Biol, 112. 25A 3.1-25A 3.23. ISSN 1934-3647 (Electronic)1934-3647 (Linking)

Cheloufi, S., Dos Santos, C. O., Chong, M. M. W., Hannon, G. J. (June 2010) A Dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature, 465 (7298). 584-U76. ISSN 0028-0836

Cheng, J., Kapranov, P., Drenkow, J., Dike, S., Brubaker, S., Patel, S., Long, J., Stern, D., Tammana, H., Helt, G., Sementchenko, V., Piccolboni, A., Bekiranov, S., Bailey, D. K., Ganesh, M., Ghosh, S., Bell, I., Gerhard, D. S., Gingeras, T. R. (2005) Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science, 308 (5725). pp. 1149-1154. ISSN 00368075 (ISSN) (Public Dataset)

Chitwood, D. H., Nogueira, F. T., Howell, M. D., Montogmery, T. A., Carrington, J. C., Timmermans, M. C. (2008) Pattern formation in leaves via small RNA mobility. Developmental Biology, 319 (2). pp. 587-588. ISSN 0012-1606

Cibrian-Jaramillo, A., De la Torre-Barcena, J. E., Lee, E. K., Katari, M. S., Little, D. P., Stevenson, D. W., Martienssen, R. A., Coruzzi, G. M., DeSalle, R. (March 2010) Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution. Genome Biology and Evolution, 2. pp. 225-239. ISSN 1759-6653

Clarke, P. A., Pe'ery, T., Ma, Y., Mathews, M. B. (October 1994) Structural features of adenovirus 2 virus-associated RNA required for binding to the protein kinase DAI. Nucleic Acids Res, 22 (21). pp. 4364-74. ISSN 0305-1048 (Print)

Cléry, A., Sinha, R., Anczuków, O., Corrionero, A., Moursy, A., Daubner, G. M., Valcárcel, J., Krainer, A. R., Allain, F. H. T. (July 2013) Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition. Proceedings of the National Academy of Sciences of the United States of America, 110 (30). E2802-E2811. ISSN 00278424

D

Dever, T., Fox, P., Hinnebusch, A., Izaurralde, E. (September 2010) TRANSLATIONAL CONTROL. In: 2010 meeting on TRANSLATIONAL CONTROL, September 13–September 17, 2010, Cold Spring Harbor Laborator.

F

Flint, S. J., Sharp, P. A. (1975) Mapping of Viral-Specific Rna in Cytoplasm and Nucleus of Adenovirus 2-Infected Human Cells. Brookhaven Symposia in Biology (26). pp. 333-358.

G

Gandy, S., Man-Yee Lee, V., Rothstein, J. (December 2010) NEURODEGENERATIVE DISEASES: BIOLOGY & THERAPEUTICS. In: 2010 meeting of Neurodegenerative diseases, December 1–December 4, 2010, Cold Spring Larbor Laboratory.

Gingeras, T. R., Davis, G. R., Whitfield, K. M., Chappelle, H. L., DiMichele, L. J., Kwoh, D. Y. (1990) Transcription-based amplification system and the detection of its RNA products by the bead-based sandwich hybridization system. In: PCR Protocols and Applications: Laboratory Manual. Academic Press, New York, pp. 245-252.

Gunnery, S., Green, S. R., Rice, A. P., Mathews, M. B. (1991) Translational Control by Hiv-1 Tar Rna. Journal of Cellular Biochemistry , 47 (Suppl ). p. 214.

Gunnery, S., Rice, A. P., Robertson, H. D., Mathews, M. B. (November 1990) Tat-responsive region RNA of human immunodeficiency virus 1 can prevent activation of the double-stranded-RNA-activated protein kinase. Proc Natl Acad Sci U S A, 87 (22). pp. 8687-91. ISSN 0027-8424 (Print)0027-8424 (Linking)

H

Haiser, H. J., Karginov, F. V., Hannon, G. J., Elliot, M. A. (2008) Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor. Nucleic Acids Research, 36 (3). pp. 732-741. ISSN 03051048 (ISSN)

Hannon, G. E., Hannon, G. J., Maroney, P. A., Nilsen, T. W. (1994) Transcription of a nematode U1 small nuclear RNA in vitro. 3'-end formation requires cis-acting elements within the coding sequence. Journal of Biological Chemistry, 269 (17). pp. 12387-12390. ISSN 00219258 (ISSN)

Hattangadi, S. M., Wong, P., Zhang, L., Flygare, J., Lodish, H. F. (December 2011) From stem cell to red cell: regulation of erythropoiesis at multiple levels by multiple proteins, RNAs, and chromatin modifications. Blood, 118 (24). pp. 6258-68. ISSN 1528-0020 (Electronic)0006-4971 (Linking)

Hua, Y., Vickers, T. A., Okunola, H. L., Bennett, C. F., Krainer, A. R. (April 2008) Antisense Masking of an hnRNP A1/A2 Intronic Splicing Silencer Corrects SMN2 Splicing in Transgenic Mice. Am J Hum Genet, 82 (4). pp. 834-48.

Huang, S., Deerinck, T. J., Ellisman, M. H. , Spector, D. L. (1998) The perinucleolar compartment and transcription. Journal of Cell Biology, 143 (1). pp. 35-47. ISSN 0021-9525

K

Kannanganattu, P. K. V., Sacco-Bubulya, P. A., Spector, D. L. (November 2001) Sequential entry of transcription/RNA processing factors into post-mitotic daughter nuclei. Molecular Biology of the Cell, 12. 101A-101A. ISSN 1059-1524

Kapranov, P., Cawley, S. E., Drenkow, J., Bekiranov, S., Strausberg, R. L., Fodor, S. P. A., Gingeras, T. R. (2002) Large-scale transcriptional activity in chromosomes 21 and 22. Science, 296 (5569). pp. 916-919. ISSN 00368075 (ISSN)

Kapranov, P., Cheng, J., Dike, S., Nix, D. A., Duttagupta, R., Willingham, A. T., Stadler, P. F., Hertel, J., Hackermüller, J., Hofacker, I. L., Bell, I., Cheung, E., Drenkow, J., Dumais, E., Patel, S., Helt, G., Ganesh, M., Ghosh, S., Piccolboni, A., Sementchenko, V., Tammana, H., Gingeras, T. R. (2007) RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science, 316 (5830). pp. 1484-1488. ISSN 00368075 (ISSN)

Kwee, L., Lucito, R., Aufiero, B., Schneider, R. J. (July 1992) Alternate translation initiation on hepatitis B virus X mRNA produces multiple polypeptides that differentially transactivate class II and III promoters. J Virol, 66 (7). pp. 4382-9.

L

Lachman, H. M., Papolos, D. F., Boyle, A., Sheftel, G., Juthani, M., Edwards, E., Henn, F. A. (April 1993) Alterations in glucocorticoid inducible RNAs in the limbic system of learned helpless rats. Brain Research, 609 (1-2). pp. 110-6. ISSN 0006-8993 (Print)0006-8993 (Linking)

Lee, J. H., Daugharthy, E. R., Scheiman, J., Kalhor, R., Ferrante, T. C., Terry, R., Turczyk, B. M., Yang, J. L., Lee, H. S., Aach, J., Zhang, K., Church, G. M. (March 2015) Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues. Nat Protoc, 10 (3). pp. 442-58. ISSN 1750-2799

M

Ma, Y., Mathews, M. B. (November 1993) Comparative analysis of the structure and function of adenovirus virus-associated RNAs. J Virol, 67 (11). pp. 6605-17. ISSN 0022-538X (Print)

Mathews, M. B., Pettersson, U. (February 1978) The low molecular weight of RNAs of adenovirus 2-infected cells. J Mol Biol, 119 (2). pp. 293-328. ISSN 0022-2836 (Print)0022-2836 (Linking)

Mathews, M. B., Shenk, T. (November 1991) Adenovirus virus-associated RNA and translation control. J Virol, 65 (11). pp. 5657-62. ISSN 0022-538X (Print)0022-538X (Linking)

Mellits, K. H., Pe'ery, T., Mathews, M. B. (April 1992) Role of the apical stem in maintaining the structure and function of adenovirus virus-associated RNA. J Virol, 66 (4). pp. 2369-77. ISSN 0022-538X (Print)0022-538X (Linking)

P

Pe'ery, T., Mellits, K. H., Mathews, M. B. (June 1993) Mutational analysis of the central domain of adenovirus virus-associated RNA mandates a revision of the proposed secondary structure. J Virol, 67 (6). pp. 3534-43. ISSN 0022-538X (Print)

Prasanth, K. V. , Prasanth, S. G., Xuan, Z. Y., Hearn, S., Freier, S. M., Bennett, C. F., Zhang, M. Q., Spector, D. L. (October 2005) Regulating gene expression through RNA nuclear retention. Cell, 123 (2). pp. 249-263. ISSN 0092-8674

Prasanth, K. V. , Spector, D. L. (2007) Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes & Development, 21 (1). pp. 11-42. ISSN 0890-9369

S

Scanlon, M. J., Ohtsu, K., Timmermans, M. C. P., Schnable, P. S. (July 2009) Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Current Protocols in Molecular Biology (SUPPL.). 25A.3.1-25A.3.15.

Shaw, S. D., Chakrabarti, S., Ghosh, G., Krainer, A. R. (2007) Deletion of the N-terminus of SF2/ASF permits RS-domain-independent pre-mRNA splicing. PLoS ONE, 2 (9). e854. ISSN 1932-6203 (Electronic)

Stillman, B., Stewart, D. (2006) Regulatory RNAs. Cold Spring Harb Symp Quant Biol, 71. ISSN 1943-4456 (Electronic) 0091-7451 (Linking)

W

Washietl, S., Pedersen, J. S., Korbel, J. O., Stocsits, C., Gruber, A. R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A., Ucla, C., Wyss, C., Antonarakis, S. E., Denoeud, F., Lagarde, J., Drenkow, J., Kapranov, P., Gingeras, T. R., Guigó, R., Snyder, M., Gerstein, M. B., Reymond, A., Hofacker, I. L., Stadler, P. F. (2007) Structured RNAs in the ENCODE selected regions of the human genome. Genome Research, 17 (6). pp. 852-864. ISSN 10889051 (ISSN) (Public Dataset)

Wimmer, K., Roca, X., Beiglbock, H., Callens, T., Etzler, J., Rao, A. R., Krainer, A. R., Fonatsch, C., Messiaen, L. (June 2007) Extensive in silico analysis of NF1 splicing defects uncovers determinants for splicing outcome upon 5 ' splice-site disruption. Human Mutation, 28 (6). pp. 599-612. ISSN 1059-7794

Z

Zink, M., Rapp, S., Gebicke-Haerter, P. J., Henn, F. A., Thome, J. (September 2005) Antidepressants differentially affect expression of complexin I and II RNA in rat hippocampus. Psychopharmacology (Berl), 181 (3). pp. 560-5. ISSN 0033-3158 (Print)0033-3158 (Linking)

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