Items where Community is "CSHL labs > McCandlish lab"

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Paper

Stoltzfus, A., McCandlish, D. M. (2017) Mutational biases influence parallel adaptation. Mol Biol Evol, 34 (9). pp. 2163-2172. ISSN 0737-4038

Bienvenu, François, Akcay, Erol, Legendre, Stéphane, McCandlish, David (2017) The genealogical decomposition of a matrix population model with applications to the aggregation of stages. Theoretical Population Biology, 115. pp. 69-80.

Newberry, M. G., McCandlish, D. M., Plotkin, J. B. (2016) Assortative mating can impede or facilitate fixation of underdominant alleles. Theor Popul Biol, 112. pp. 14-21. ISSN 1096-0325 (Electronic)0040-5809 (Linking)

McCandlish, D. M., Shah, P., Plotkin, J. B. (2016) Epistasis and the Dynamics of Reversion in Molecular Evolution. Genetics, 203 (3). pp. 1335-51. ISSN 1943-2631 (Electronic)0016-6731 (Linking)

McCandlish, D. M., Plotkin, J. B. (2016) Transcriptional errors and the drift barrier. Proc Natl Acad Sci U S A, 113 (12). pp. 3136-8. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

Stoltzfus, A., McCandlish, D. M. (2015) Mutation-biased adaptation in Andean house wrens. Proc Natl Acad Sci U S A, 112 (45). pp. 13753-4. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

McCandlish, D. M., Otwinowski, J., Plotkin, J. B. (2015) Detecting epistasis from an ensemble of adapting populations. Evolution, 69 (9). pp. 2359-70. ISSN 1558-5646 (Electronic)0014-3820 (Linking)

Shah, P., McCandlish, D. M., Plotkin, J. B. (2015) Contingency and entrenchment in protein evolution under purifying selection. Proc Natl Acad Sci U S A, 112 (25). E3226-35. ISSN 1091-6490 (Electronic)0027-8424 (Linking)

McCandlish, D. M., Epstein, C. L., Plotkin, J. B. (2015) Formal properties of the probability of fixation: identities, inequalities and approximations. Theor Popul Biol, 99. pp. 98-113. ISSN 1096-0325 (Electronic)0040-5809 (Linking)

Norris, Ryan W., Strope, Cory L., McCandlish, David M., Stoltzfus, Arlin (2015) Bayesian priors for tree calibration: Evaluating two new approaches based on fossil intervals. bioRxiv.

McCandlish, D. M., Epstein, C. L., Plotkin, J. B. (2014) The inevitability of unconditionally deleterious substitutions during adaptation. Evolution, 68 (5). pp. 1351-64. ISSN 1558-5646 (Electronic)0014-3820 (Linking)

McCandlish, David M., Stoltzfus, Arlin (2014) Modeling evolution using the probability of fixation: history and implications. The Quarterly Review of Biology, 89 (3). pp. 225-252. ISSN 0033-57701539-7718

McCandlish, D. M. (2013) On the findability of genotypes. Evolution, 67 (9). pp. 2592-603. ISSN 1558-5646 (Electronic)0014-3820 (Linking)

McCandlish, D. M., Rajon, E., Shah, P., Ding, Y., Plotkin, J. B. (2013) The role of epistasis in protein evolution. Nature, 497 (7451). E1-2; discussion E2. ISSN 1476-4687 (Electronic)0028-0836 (Linking)

McCandlish, D. M. (2011) Visualizing fitness landscapes. Evolution, 65 (6). pp. 1544-58. ISSN 1558-5646 (Electronic)0014-3820 (Linking)

Tolstorukov, M. Y., Colasanti, A. V., McCandlish, D. M., Olson, W. K., Zhurkin, V. B. (2007) A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning. J Mol Biol, 371 (3). pp. 725-38. ISSN 0022-2836 (Print)0022-2836 (Linking)

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