Browse by CSHL Author

Shuvaev, Sergey, Lachi, Divyansha, Koulakov, Alexei, Zador, Anthony (September 2024) Encoding innate ability through a genomic bottleneck. Proceedings of the National Academy of Sciences of the United States of America, 121 (38). e2409160121. ISSN 0027-8424

Giaffar, Hamza, Shuvaev, Sergey, Rinberg, Dmitry, Koulakov, Alexei A (September 2024) The primacy model and the structure of olfactory space. PLoS Computational Biology, 20 (9). e1012379. ISSN 1553-734X (Public Dataset)

Zador, Anthony, Escola, Sean, Richards, Blake, Ölveczky, Bence, Bengio, Yoshua, Boahen, Kwabena, Botvinick, Matthew, Chklovskii, Dmitri, Churchland, Anne, Clopath, Claudia, DiCarlo, James, Ganguli, Surya, Hawkins, Jeff, Körding, Konrad, Koulakov, Alexei, LeCun, Yann, Lillicrap, Timothy, Marblestone, Adam, Olshausen, Bruno, Pouget, Alexandre, Savin, Cristina, Sejnowski, Terrence, Simoncelli, Eero, Solla, Sara, Sussillo, David, Tolias, Andreas S, Tsao, Doris (March 2023) Catalyzing next-generation Artificial Intelligence through NeuroAI. Nature Communications, 14 (1). p. 1597. ISSN 2041-1723

Shuvaev, Sergey, Amelchenko, Evgeny, Smagin, Dmitry, Kudryavtseva, Natalia, Enikolopov, Grigori, Koulakov, Alexei (March 2023) A normative theory of social conflict. (Submitted)

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (October 2022) High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex. Cell, 185 (22). 4117-4134.e28. ISSN 0092-8674

Shuvaev, Sergey, Lazutkin, Alexander, Kiryanov, Roman, Anokhin, Konstantin, Enikolopov, Grigori, Koulakov, Alexei A (March 2022) Spatiotemporal 3D image registration for mesoscale studies of brain development. Scientific Reports, 12 (1). p. 3648. ISSN 2045-2322

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin B, Kebschull, Justus M, Zador, Anthony M, Koulakov, Alexei A, Albeanu, Dinu F (2022) High-throughput sequencing of olfactory single neuron projections reveals non-random spatial organization. In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Samoilova, Khristina, Nakayama, Hirofumi, Pashakhanloo, Farhad, Rinberg, Dmitry, Koulakov, Alexei (2022) The order code in the olfactory bulb: can odorants be represented by the order of glomerular activation? In: 44th Annual Meeting of the Association-for-Chemoreception-Sciences.

Shuvaev, Sergey A, Tran, Ngoc B, Stephenson-Jones, Marcus, Li, Bo, Koulakov, Alexei A (January 2021) Neural Networks With Motivation. Frontiers in Systems Neuroscience, 14. p. 609316. ISSN 1662-5137

Chen, Yushu, Chen, Xiaoyin, Baserdem, Batuhan, Zhan, Huiqing, Li, Yan, Davis, Martin, Kebschull, Justus, Zador, Anthony, Koulakov, Alexei, Albeanu, Dinu (2021) Wiring logic of the early rodent olfactory system revealed by high-throughput sequencing of single neuron projections. bioRxiv. (Submitted)

Shuvaev, S, Starosta, S, Kvitsiani, D, Kepecs, A, Koulakov, A (January 2020) R-learning in actor-critic model offers a biologically relevant mechanism for sequential decision-making. In: NeurIPS 2020.

Chen, Yushu, Chen, Xiaoyin, Kebschull, Justus M, Koulakov, Alexei, Zador, Anthony M, Albeanu, Dinu F (September 2019) The logic of olfactory bulb outputs revealed by high-throughput single-neuron projection mapping using sequencing. In: UNSPECIFIED.

Chae, H., Kepple, D. R., Bast, W. G., Murthy, V. N., Koulakov, A. A., Albeanu, D. F. (August 2019) Mosaic representations of odors in the input and output layers of the mouse olfactory bulb. Nat Neurosci, 22 (8). 1306-1317.. ISSN 1097-6256 (Public Dataset)

Tran, Ngoc, Kepple, Daniel, Shuvaev, Sergey A., Koulakov, Alexei A. (June 2019) DeepNose: Using artificial neural networks to represent the space of odorants. Proceedings of the 36th International Conference on Machine Learning, 97. pp. 6305-6314.

Shuvaev, S. A., Baserdem, B., Zador, A. M., Koulakov, A. A. (April 2019) Network cloning using DNA barcodes. Proc Natl Acad Sci U S A, 116 (19). pp. 9610-9615. ISSN 0027-8424

Kepple, D. R., Giaffar, H., Rinberg, D., Koulakov, A. A. (February 2019) Deconstructing Odorant Identity via Primacy in Dual Networks. Neural Computation, 31 (4). pp. 710-737. ISSN 08997667 (ISSN)

Tran, NB, Kepple, DR, Shuvaev, SA, Koulakov, AA (January 2019) Deepnose: Using artificial neural networks to represent the space of odorants. In: 36th International Conference on Machine Learning, ICML 2019.

Kepple, D. R., Giaffar, H., Rinberg, D., Koulakov, A. A. (October 2018) Primacy coding in dual olfactory networks. 51st Asilomar Conference on Signals, Systems, and Computers, 2017-O. pp. 587-592.

Mineyeva, O., Koulakov, A., Enikolopov, G. (August 2018) Neural stem cell spacing questions their self-renewal. Aging (Albany NY), 10 (8). pp. 1793-1794. ISSN 1945-4589

Kepple, Daniel, Cazakoff, Brittany, Demmer, Heike, Eckmeier, Dennis, Shea, Stephen, Koulakov, Alexei (June 2018) Computational algorithms and neural circuitry for compressed sensing in the mammalian main olfactory bulb. bioRxiv. (Unpublished)

Lazutkin, A, Shuvaev, S, Kiryanov, R, Anokhin, K, Koulakov, A, Enikolopov, G (June 2018) WM-CLICK, a new method for 3d detection, representation and analysis of dividing cells in the whole brain. Opera Medica et Physiologica, 4. p. 20. ISSN 2500-2287

Mineyeva, O, Koulakov, A, Enikolopov, G (June 2018) A closer look at the topography of hippocampal neural stem cells indicates their limited self-renewal. Opera Medica et Physiologica, 4. p. 7. ISSN 2500-2287

Mineyeva, O. A., Enikolopov, G., Koulakov, A. A. (February 2018) Spatial geometry of stem cell proliferation in the adult hippocampus. Sci Rep, 8 (1). p. 3444. ISSN 2045-2322

Shuvaev, Sergey, Giaffar, Hamza, Koulakov, Alexei A (December 2017) Representations of Sound in Deep Learning of Audio Features from Music. arXiv. (Submitted)

Wilson, C. D., Serrano, G. O., Koulakov, A. A., Rinberg, D. (November 2017) A primacy code for odor identity. Nat Commun, 8 (1). p. 1477. ISSN 2041-1723

Shuvaev, S. A., Lazutkin, A. A., Kedrov, A. V., Anokhin, K. V., Enikolopov, G. N., Koulakov, A. A. (2017) DALMATIAN: An Algorithm for Automatic Cell Detection and Counting in 3D. Front Neuroanat, 11. p. 117. ISSN 1662-5129 (Print)1662-5129

Shuvaev, Sergey A, Başerdem, Batuhan, Zador, Anthony, Koulakov, Alexei A (November 2016) Network cloning using DNA barcodes. arXiv. (Submitted)

Kepple, Daniel, Giaffar, Hamza, Rinberg, Dmitry, Koulakov, Alexei (September 2016) Deconstructing Odorant Identity via Primacy in Dual Networks. arXiv. (Submitted)

Sharpee, Tatyana O, Destexhe, Alain, Kawato, Mitsuo, Sekulić, Vladislav, Skinner, Frances K, Wójcik, Daniel K, Chintaluri, Chaitanya, Cserpán, Dorottya, Somogyvári, Zoltán, Kim, Jae Kyoung, Kilpatrick, Zachary P, Bennett, Matthew R, Josić, Kresimir, Elices, Irene, Arroyo, David, Levi, Rafael, Rodriguez, Francisco B, Varona, Pablo, Hwang, Eunjin, Kim, Bowon, Han, Hio-Been, Kim, Tae, McKenna, James T, Brown, Ritchie E, McCarley, Robert W, Choi, Jee Hyun, Rankin, James, Popp, Pamela Osborn, Rinzel, John, Tabas, Alejandro, Rupp, André, Balaguer-Ballester, Emili, Maturana, Matias I, Grayden, David B, Cloherty, Shaun L, Kameneva, Tatiana, Ibbotson, Michael R, Meffin, Hamish, Koren, Veronika, Lochmann, Timm, Dragoi, Valentin, Obermayer, Klaus, Psarrou, Maria, Schilstra, Maria, Davey, Neil, Torben-Nielsen, Benjamin, Steuber, Volker, Ju, Huiwen, Yu, Jiao, Hines, Michael L, Chen, Liang, Yu, Yuguo, Kim, Jimin, Leahy, Will, Shlizerman, Eli, Birgiolas, Justas, Gerkin, Richard C, Crook, Sharon M, Viriyopase, Atthaphon, Memmesheimer, Raoul-Martin, Gielen, Stan, Dabaghian, Yuri, DeVito, Justin, Perotti, Luca, Kim, Anmo J, Fenk, Lisa M, Cheng, Cheng, Maimon, Gaby, Zhao, Chang, Widmer, Yves, Sprecher, Simon, Senn, Walter, Halnes, Geir, Mäki-Marttunen, Tuomo, Keller, Daniel, Pettersen, Klas H, Andreassen, Ole A, Einevoll, Gaute T, Yamada, Yasunori, Steyn-Ross, Moira L, Alistair Steyn-Ross, D, Mejias, Jorge F, Murray, John D, Kennedy, Henry, Wang, Xiao-Jing, Kruscha, Alexandra, Grewe, Jan, Benda, Jan, Lindner, Benjamin, Badel, Laurent, Ohta, Kazumi, Tsuchimoto, Yoshiko, Kazama, Hokto, Kahng, B, Tam, Nicoladie D, Pollonini, Luca, Zouridakis, George, Soh, Jaehyun, Kim, DaeEun, Yoo, Minsu, Palmer, SE, Culmone, Viviana, Bojak, Ingo, Ferrario, Andrea, Merrison-Hort, Robert, Borisyuk, Roman, Kim, Chang Sub, Tezuka, Taro, Joo, Pangyu, Rho, Young-Ah, Burton, Shawn D, Bard Ermentrout, G, Jeong, Jaeseung, Urban, Nathaniel N, Marsalek, Petr, Kim, Hoon-Hee, Moon, Seok-hyun, Lee, Do-won, Lee, Sung-beom, Lee, Ji-yong, Molkov, Yaroslav I, Hamade, Khaldoun, Teka, Wondimu, Barnett, William H, Kim, Taegyo, Markin, Sergey, Rybak, Ilya A, Forro, Csaba, Dermutz, Harald, Demkó, László, Vörös, János, Babichev, Andrey, Huang, Haiping, Verduzco-Flores, Sergio, Dos Santos, Filipa, Andras, Peter, Metzner, Christoph, Schweikard, Achim, Zurowski, Bartosz, Roach, James P, Sander, Leonard M, Zochowski, Michal R, Skilling, Quinton M, Ognjanovski, Nicolette, Aton, Sara J, Zochowski, Michal, Wang, Sheng-Jun, Ouyang, Guang, Guang, Jing, Zhang, Mingsha, Michael Wong, KY, Zhou, Changsong, Robinson, Peter A, Sanz-Leon, Paula, Drysdale, Peter M, Fung, Felix, Abeysuriya, Romesh G, Rennie, Chris J, Zhao, Xuelong, Choe, Yoonsuck, Yang, Huei-Fang, Mi, Yuanyuan, Lin, Xiaohan, Wu, Si, Liedtke, Joscha, Schottdorf, Manuel, Wolf, Fred, Yamamura, Yoriko, Wickens, Jeffery R, Rumbell, Timothy, Ramsey, Julia, Reyes, Amy, Draguljić, Danel, Hof, Patrick R, Luebke, Jennifer, Weaver, Christina M, He, Hu, Yang, Xu, Ma, Hailin, Xu, Zhiheng, Wang, Yuzhe, Baek, Kwangyeol, Morris, Laurel S, Kundu, Prantik, Voon, Valerie, Agnes, Everton J, Vogels, Tim P, Podlaski, William F, Giese, Martin, Kuravi, Pradeep, Vogels, Rufin, Seeholzer, Alexander, Podlaski, William, Ranjan, Rajnish, Vogels, Tim, Torres, Joaquin J, Baroni, Fabiano, Latorre, Roberto, Gips, Bart, Lowet, Eric, Roberts, Mark J, de Weerd, Peter, Jensen, Ole, van der Eerden, Jan, Goodarzinick, Abdorreza, Niry, Mohammad D, Valizadeh, Alireza, Pariz, Aref, Parsi, Shervin S, Warburton, Julia M, Marucci, Lucia, Tamagnini, Francesco, Brown, Jon, Tsaneva-Atanasova, Krasimira, Kleberg, Florence I, Triesch, Jochen, Moezzi, Bahar, Iannella, Nicolangelo, Schaworonkow, Natalie, Plogmacher, Lukas, Goldsworthy, Mitchell R, Hordacre, Brenton, McDonnell, Mark D, Ridding, Michael C, Zapotocky, Martin, Smit, Daniel, Fouquet, Coralie, Trembleau, Alain, Dasgupta, Sakyasingha, Nishikawa, Isao, Aihara, Kazuyuki, Toyoizumi, Taro, Robb, Daniel T, Mellen, Nick, Toporikova, Natalia, Tang, Rongxiang, Tang, Yi-Yuan, Liang, Guangsheng, Kiser, Seth A, Howard, James H, Goncharenko, Julia, Voronenko, Sergej O, Ahamed, Tosif, Stephens, Greg, Yger, Pierre, Lefebvre, Baptiste, Spampinato, Giulia Lia Beatrice, Esposito, Elric, et Olivier Marre, Marcel Stimberg, Choi, Hansol, Song, Min-Ho, Chung, SueYeon, Lee, Dan D, Sompolinsky, Haim, Phillips, Ryan S, Smith, Jeffrey, Chatzikalymniou, Alexandra Pierri, Ferguson, Katie, Alex Cayco Gajic, N, Clopath, Claudia, Angus Silver, R, Gleeson, Padraig, Marin, Boris, Sadeh, Sadra, Quintana, Adrian, Cantarelli, Matteo, Dura-Bernal, Salvador, Lytton, William W, Davison, Andrew, Li, Luozheng, Zhang, Wenhao, Wang, Dahui, Song, Youngjo, Park, Sol, Choi, Ilhwan, Shin, Hee-sup, Choi, Hannah, Pasupathy, Anitha, Shea-Brown, Eric, Huh, Dongsung, Sejnowski, Terrence J, Vogt, Simon M, Kumar, Arvind, Schmidt, Robert, Van Wert, Stephen, Schiff, Steven J, Veale, Richard, Scheutz, Matthias, Lee, Sang Wan, Gallinaro, Júlia, Rotter, Stefan, Rubchinsky, Leonid L, Cheung, Chung Ching, Ratnadurai-Giridharan, Shivakeshavan, Shomali, Safura Rashid, Ahmadabadi, Majid Nili, Shimazaki, Hideaki, Nader Rasuli, S, Zhao, Xiaochen, Rasch, Malte J, Wilting, Jens, Priesemann, Viola, Levina, Anna, Rudelt, Lucas, Lizier, Joseph T, Spinney, Richard E, Rubinov, Mikail, Wibral, Michael, Bak, Ji Hyun, Pillow, Jonathan, Zaho, Yuan, Park, Il Memming, Kang, Jiyoung, Park, Hae-Jeong, Jang, Jaeson, Paik, Se-Bum, Choi, Woochul, Lee, Changju, Song, Min, Lee, Hyeonsu, Park, Youngjin, Yilmaz, Ergin, Baysal, Veli, Ozer, Mahmut, Saska, Daniel, Nowotny, Thomas, Chan, Ho Ka, Diamond, Alan, Herrmann, Christoph S, Murray, Micah M, Ionta, Silvio, Hutt, Axel, Lefebvre, Jérémie, Weidel, Philipp, Duarte, Renato, Morrison, Abigail, Lee, Jung H, Iyer, Ramakrishnan, Mihalas, Stefan, Koch, Christof, Petrovici, Mihai A, Leng, Luziwei, Breitwieser, Oliver, Stöckel, David, Bytschok, Ilja, Martel, Roman, Bill, Johannes, Schemmel, Johannes, Meier, Karlheinz, Esler, Timothy B, Burkitt, Anthony N, Kerr, Robert R, Tahayori, Bahman, Nolte, Max, Reimann, Michael W, Muller, Eilif, Markram, Henry, Parziale, Antonio, Senatore, Rosa, Marcelli, Angelo, Skiker, K, Maouene, M, Neymotin, Samuel A, Seidenstein, Alexandra, Lakatos, Peter, Sanger, Terence D, Menzies, Rosemary J, McLauchlan, Campbell, van Albada, Sacha J, Kedziora, David J, Neymotin, Samuel, Kerr, Cliff C, Suter, Benjamin A, Shepherd, Gordon MG, Ryu, Juhyoung, Lee, Sang-Hun, Lee, Joonwon, Lee, Hyang Jung, Lim, Daeseob, Wang, Jisung, Lee, Heonsoo, Jung, Nam, Anh Quang, Le, Maeng, Seung Eun, Lee, Tae Ho, Lee, Jae Woo, Park, Chang-hyun, Ahn, Sora, Moon, Jangsup, Choi, Yun Seo, Kim, Juhee, Jun, Sang Beom, Lee, Seungjun, Lee, Hyang Woon, Jo, Sumin, Jun, Eunji, Yu, Suin, Goetze, Felix, Lai, Pik-Yin, Kim, Seonghyun, Kwag, Jeehyun, Jang, Hyun Jae, Filipović, Marko, Reig, Ramon, Aertsen, Ad, Silberberg, Gilad, Bachmann, Claudia, Buttler, Simone, Jacobs, Heidi, Dillen, Kim, Fink, Gereon R, Kukolja, Juraj, Kepple, Daniel, Giaffar, Hamza, Rinberg, Dima, Shea, Steven, Koulakov, Alex, Bahuguna, Jyotika, Tetzlaff, Tom, Kotaleski, Jeanette Hellgren, Kunze, Tim, Peterson, Andre, Knösche, Thomas, Kim, Minjung, Kim, Hojeong, Park, Ji Sung, Yeon, Ji Won, Kim, Sung-Phil, Kang, Jae-Hwan, Lee, Chungho, Spiegler, Andreas, Petkoski, Spase, Palva, Matias J, Jirsa, Viktor K, Saggio, Maria L, Siep, Silvan F, Stacey, William C, Bernar, Christophe, Choung, Oh-hyeon, Jeong, Yong, Lee, Yong-il, Kim, Su Hyun, Jeong, Mir, Lee, Jeungmin, Kwon, Jaehyung, Kralik, Jerald D, Jahng, Jaehwan, Hwang, Dong-Uk, Kwon, Jae-Hyung, Park, Sang-Min, Kim, Seongkyun, Kim, Hyoungkyu, Kim, Pyeong Soo, Yoon, Sangsup, Lim, Sewoong, Park, Choongseok, Miller, Thomas, Clements, Katie, Ahn, Sungwoo, Ji, Eoon Hye, Issa, Fadi A, Baek, JeongHun, Oba, Shigeyuki, Yoshimoto, Junichiro, Doya, Kenji, Ishii, Shin, Mosqueiro, Thiago S, Strube-Bloss, Martin F, Smith, Brian, Huerta, Ramon, Hadrava, Michal, Hlinka, Jaroslav, Bos, Hannah, Helias, Moritz, Welzig, Charles M, Harper, Zachary J, Kim, Won Sup, Shin, In-Seob, Baek, Hyeon-Man, Han, Seung Kee, Richter, René, Vitay, Julien, Beuth, Frederick, Hamker, Fred H, Toppin, Kelly, Guo, Yixin, Graham, Bruce P, Kale, Penelope J, Gollo, Leonardo L, Stern, Merav, Abbott, LF, Fedorov, Leonid A, Giese, Martin A, Ardestani, Mohammad Hovaidi, Faraji, Mohammad Javad, Preuschoff, Kerstin, Gerstner, Wulfram, van Gendt, Margriet J, Briaire, Jeroen J, Kalkman, Randy K, Frijns, Johan HM, Lee, Won Hee, Frangou, Sophia, Fulcher, Ben D, Tran, Patricia HP, Fornito, Alex, Gliske, Stephen V, Lim, Eugene, Holman, Katherine A, Fink, Christian G, Kim, Jinseop S, Mu, Shang, Briggman, Kevin L, Sebastian Seung, H, the EyeWirers, Wegener, Detlef, Bohnenkamp, Lisa, Ernst, Udo A, Devor, Anna, Dale, Anders M, Lines, Glenn T, Edwards, Andy, Tveito, Aslak, Hagen, Espen, Senk, Johanna, Diesmann, Markus, Schmidt, Maximilian, Bakker, Rembrandt, Shen, Kelly, Bezgin, Gleb, Hilgetag, Claus-Christian, van Albada, Sacha Jennifer, Sun, Haoqi, Sourina, Olga, Huang, Guang-Bin, Klanner, Felix, Denk, Cornelia, Glomb, Katharina, Ponce-Alvarez, Adrián, Gilson, Matthieu, Ritter, Petra, Deco, Gustavo, Witek, Maria AG, Clarke, Eric F, Hansen, Mads, Wallentin, Mikkel, Kringelbach, Morten L, Vuust, Peter, Klingbeil, Guido, De Schutter, Erik, Chen, Weiliang, Zang, Yunliang, Hong, Sungho, Takashima, Akira, Zamora, Criseida, Gallimore, Andrew R, Goldschmidt, Dennis, Manoonpong, Poramate, Karoly, Philippa J, Freestone, Dean R, Soundry, Daniel, Kuhlmann, Levin, Paninski, Liam, Cook, Mark, Lee, Jaejin, Fishman, Yonatan I, Cohen, Yale E, Roberts, James A, Cocchi, Luca, Sweeney, Yann, Lee, Soohyun, Jung, Woo-Sung, Kim, Youngsoo, Jung, Younginha, Song, Yoon-Kyu, Chavane, Frédéric, Soman, Karthik, Muralidharan, Vignesh, Srinivasa Chakravarthy, V, Shivkumar, Sabyasachi, Mandali, Alekhya, Pragathi Priyadharsini, B, Mehta, Hima, Davey, Catherine E, Brinkman, Braden AW, Kekona, Tyler, Rieke, Fred, Buice, Michael, De Pittà, Maurizio, Berry, Hugues, Brunel, Nicolas, Breakspear, Michael, Marsat, Gary, Drew, Jordan, Chapman, Phillip D, Daly, Kevin C, Bradle, Samual P, Seo, Sat Byul, Su, Jianzhong, Kavalali, Ege T, Blackwell, Justin, Shiau, LieJune, Buhry, Laure, Basnayake, Kanishka, Lee, Sue-Hyun, Levy, Brandon A, Baker, Chris I, Leleu, Timothée, Philips, Ryan T, Chhabria, Karishma (August 2016) 25th Annual Computational Neuroscience Meeting: CNS-2016. In: 25th Annual Computational Neuroscience Meeting: CNS-2016, 2–7 July 2016, Seogwipo City, Jeju-do, South Korea..

Ferrante, D. D., Wei, Y., Koulakov, A. A. (June 2016) Mathematical Model of Evolution of Brain Parcellation. Front Neural Circuits, 10. p. 43. ISSN 1662-5110 (Electronic)1662-5110 (Linking)

Chae, H. G., Kepple, D., Koulakov, A. A., Murthy, V. N., Albeanu, D. F. (September 2015) Mosaic representation of odors in the output layer of the mouse olfactory bulb. Chemical Senses, 40 (7). p. 564. ISSN 0379-864X

Wei, Y., Koulakov, A. A. (November 2014) Long-term memory stabilized by noise-induced rehearsal. Journal of Neuroscience, 34 (47). pp. 15804-15. ISSN 0270-6474

Lak, A., Costa, G. M., Romberg, E., Koulakov, A. A., Mainen, Z. F., Kepecs, A. (September 2014) Orbitofrontal Cortex Is Required for Optimal Waiting Based on Decision Confidence. Neuron, 84 (1). pp. 190-201. ISSN 0896-6273

Sanders, H., Kolterman, B. E., Shusterman, R., Rinberg, D., Koulakov, A., Lisman, J. (September 2014) A network that performs brute-force conversion of a temporal sequence to a spatial pattern: relevance to odor recognition. Frontiers in Computational Neuroscience, 8. Article no.108. ISSN 1662-5188

Wei, Yi, Koulakov, Alexei (March 2014) Supplementary information for “Long-term memory stabilized by noise-induced rehearsal”. Unpublished. (Unpublished)

Wei, Y., Tsigankov, D., Koulakov, A. (December 2013) The molecular basis for the development of neural maps. Annals of the New York Academy of Sciences, 1305. pp. 44-60. ISSN 0077-8923

Wei, Y., Koulakov, A. A. (December 2012) An Exactly Solvable Model of Random Site-Specific Recombinations. Bulletin of Mathematical Biology, 74 (12). pp. 2897-20. ISSN 00928240

Koulakov, A. A. (November 2012) Talk from Alex Koulakov at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Kolterman, Brian E, Iossifov, Ivan, Koulakov, Alexei A (January 2012) A race model for singular olfactory receptor expression. (Submitted)

Koulakov, A, Lazebnik, Y (2012) The problem of colliding networks and its relation to cell fusion and cancer. Biophysical Journal, 103 (9). pp. 2011-2020.

Triplett, J. W., Pfeiffenberger, C., Yamada, J., Stafford, B. K., Sweeney, N. T., Litke, A. M., Sher, A., Koulakov, A. A., Feldheim, D. A. (November 2011) Competition is a driving force in topographic mapping. Proceedings of the National Academy of Sciences of the United States of America, 108 (47). pp. 19060-19065. ISSN 00278424

Koulakov, A. A., Rinberg, D. (October 2011) Sparse Incomplete Representations: A Potential Role of Olfactory Granule Cells. Neuron, 72 (1). pp. 124-136. ISSN 0896-6273

Koulakov, A. A., Kolterman, B. E., Enikolopov, A. G., Rinberg, D. (September 2011) In search of the structure of human olfactory space. Frontiers in Systems Neuroscience, 5. p. 65. ISSN 1662-5137 (Electronic)1662-5137 (Linking)

Shusterman, R., Smear, M. C., Koulakov, A. A., Rinberg, D. (August 2011) Precise olfactory responses tile the sniff cycle. Nature Neuroscience, 14 (8). 1039-U136. ISSN 1097-6256

Encinas, J. M., Michurina, T. V., Peunova, N., Park, J.H., Tordo, J., Peterson, D. A., Fishell, G., Koulakov, A. A., Enikolopov, G. N. (May 2011) Division-Coupled Astrocytic Differentiation and Age-Related Depletion of Neural Stem Cells in the Adult Hippocampus. Cell Stem Cell, 8 (5). pp. 566-579. ISSN 1934-5909

Tsigankov, D., Koulakov, A. A. (December 2010) Sperry versus Hebb: topographic mapping in Isl2/EphA3 mutant mice. BMC Neurosci, 11. p. 155. ISSN 1471-2202 (Electronic) 1471-2202 (Linking)

Kolterman, B. E., Koulakov, A. A. (April 2010) Is universal coverage good for neurons? Neuron, 66 (1). pp. 1-3. ISSN 1097-4199 (Electronic) 0896-6273 (Linking)

Tsigankov, D. N., Koulakov, A. A. (November 2009) Optimal axonal and dendritic branching strategies during the development of neural circuitry. Front Neural Circuits, 3. p. 18. ISSN 1662-5110 (Electronic)

Koulakov, A. A., Hromadka, T., Zador, A. M. (March 2009) Correlated Connectivity and the Distribution of Firing Rates in the Neocortex. J Neurosci, 29 (12). pp. 3685-3694. ISSN 0270-6474

Nikitchenko, M., Koulakov, A. A. (October 2008) Neural Integrator: A Sandpile Model. Neural Comput, 20 (10). pp. 2379-2417.

Koulakov, A. A., Gelperin, A., Rinberg, D. (December 2007) Olfactory coding with all-or-nothing glomeruli. J Neurophysiol, 98 (6). pp. 3134-42. ISSN 0022-3077 (Print)

Rinberg, D. A., Koulakov, A. A., Gelperin, A. (August 2006) Sparse odor coding in awake behaving mice. J Neurosci, 26 (34). pp. 8857-65. ISSN 1529-2401 (Electronic)

Rinberg, D. A., Koulakov, A. A., Gelperin, A. (August 2006) Speed-Accuracy Tradeoff in Olfaction. Neuron, 51 (3). pp. 351-358. ISSN 08966273

Tsigankov, D. N., Koulakov, A. A. (August 2006) A unifying model for activity-dependent and activity-independent mechanisms predicts complete structure of topographic maps in ephrin-A deficient mice. J Comput Neurosci, 21 (1). pp. 101-14. ISSN 0929-5313 (Print)

Koulakov, A. A., Rinberg, D. A., Tsigankov, D. N. (December 2005) How to find decision makers in neural networks. Biological Cybernetics, 94 (1). pp. 86-88. ISSN 03401200

Warren, D. J., Koulakov, A. A., Normann, R. A. (September 2004) Spatiotemporal encoding of a bar's direction of motion by neural ensembles in cat primary visual cortex. Annals of Biomedical Engineering, 32 (9). pp. 1265-1275. ISSN 0090-6964

Koulakov, A. A., Tsigankov, D. N. (August 2004) A stochastic model for retinocollicular map development. BMC Neurosci, 5. p. 30. ISSN 1471-2202 (Electronic)

Chklovskii, D. B., Koulakov, A. A. (2004) Maps in the brain: what can we learn from them? Annu Rev Neurosci, 27. pp. 369-92. ISSN 0147-006X (Print)

Koulakov, A. A., Chklovskii, D. B. (June 2002) Direction of motion maps in the visual cortex: a wire length minimization approach. Neurocomputing, 44. pp. 489-494. ISSN 0925-2312

Koulakov, A. A., Raghavachari, S., Kepecs, A., Lisman, J. E. (2002) Model for a robust neural integrator. Nature Neuroscience, 5 (8). pp. 775-782. ISSN 10976256 (ISSN)

Koulakov, A. A., Chklovskii, D. B. (February 2001) Orientation preference patterns in mammalian visual cortex: A wire length minimization approach. Neuron, 29 (2). pp. 519-527. ISSN 0896-6273

Koulakov, A. A. (February 2001) Properties of synaptic transmission and the global stability of delayed activity states. Network, 12 (1). pp. 47-74. ISSN 0954-898X (Print)0954-898X (Linking)

Chklovskii, D. B., Koulakov, A. A. (September 2000) A wire length minimization approach to ocular dominance patterns in mammalian visual cortex. Physica A-Statistical Mechanics and Its Applications, 284 (1-4). pp. 318-334. ISSN 0378-4371