Browse by CSHL Author

Paper

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael M, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, International Brain Laboratory, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (July 2024) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools. Nature Methods, 21 (7). pp. 1316-1328. ISSN 1548-7091

Zeraati, R, Buendía, V, Engel, TA, Levina, A (April 2024) Topology-dependent coalescence controls scaling exponents in finite networks. Physical Review Research, 6 (2). ISSN 2643-1564

Xia, Ruobing, Chen, Xiaomo, Engel, Tatiana A, Moore, Tirin (February 2024) Common and distinct neural mechanisms of attention. Trends in Cognitive Sciences. ISSN 1364-6613

Wang, Julia H, Tsin, Dexter, Engel, Tatiana A (December 2023) Predictive variational autoencoder for learning robust representations of time-series data. arXiv. (Submitted)

Wang, Julia Huiming, Tsin, Dexter, Engel, Tatiana (December 2023) Predictive variational autoencoder for learning robust representations of time-series data. arXiv. (Submitted)

Genkin, Mikhail, Shenoy, Krishna V, Chandrasekaran, Chandramouli, Engel, Tatiana A (July 2023) The dynamics and geometry of choice in premotor cortex. (Submitted)

Findling, Charles, Hubert, Felix, Acerbi, Luigi, Benson, Brandon, Benson, Julius, Birman, Daniel, Bonacchi, Niccolò, Carandini, Matteo, Catarino, Joana A, Chapuis, Gaelle A, Churchland, Anne K, Dan, Yang, DeWitt, Eric EJ, Engel, Tatiana A, Fabbri, Michele, Faulkner, Mayo, Fiete, Ila Rani, Freitas-Silva, Laura, Gerçek, Berk, Harris, Kenneth D, Häusser, Michael, Hofer, Sonja B, Hu, Fei, Huntenburg, Julia M, Khanal, Anup, Krasniak, Chris, Langdon, Christopher, Latham, Peter E, P Lau, Petrina Y, Mainen, Zach, Meijer, Guido T, Miska, Nathaniel J, Mrsic-Flogel, Thomas D, Noel, Jean-Paul, Nylund, Kai, Pan-Vazquez, Alejandro, Paninski, Liam, Pillow, Jonathan, Rossant, Cyrille, Roth, Noam, Schaeffer, Rylan, Schartner, Michael, Shi, Yanliang, Socha, Karolina Z, Steinmetz, Nicholas A, Svoboda, Karel, Tessereau, Charline, Urai, Anne E, Wells, Miles J, West, Steven Jon, Whiteway, Matthew R, Winter, Olivier, Witten, Ilana B, Zador, Anthony, Dayan, Peter, Pouget, Alexandre (July 2023) Brain-wide representations of prior information in mouse decision-making. bioRxiv. (Submitted)

Biderman, Dan, Whiteway, Matthew R, Hurwitz, Cole, Greenspan, Nicholas, Lee, Robert S, Vishnubhotla, Ankit, Warren, Richard, Pedraja, Federico, Noone, Dillon, Schartner, Michael, Huntenburg, Julia M, Khanal, Anup, Meijer, Guido T, Noel, Jean-Paul, Pan-Vazquez, Alejandro, Socha, Karolina Z, Urai, Anne E, Cunningham, John P, Sawtell, Nathaniel B, Paninski, Liam (April 2023) Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. bioRxiv. ISSN 2692-8205 (Submitted)

Langdon, Christopher, Genkin, Mikhail, Engel, Tatiana A (April 2023) A unifying perspective on neural manifolds and circuits for cognition. Nature Reviews Neuroscience. ISSN 1471-003X

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas A, Gieselmann, Marc A, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana A (April 2023) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. Nature Communications, 14 (1). p. 1858. ISSN 2041-1723

Roach, James P, Churchland, Anne K, Engel, Tatiana A (January 2023) Choice selective inhibition drives stability and competition in decision circuits. Nature Communications, 14 (1). p. 147. ISSN 2041-1723

Shi, YL, Zeraati, R, Levina, A, Engel, TA (January 2023) Spatial and temporal correlations in neural networks with structured connectivity. Physical Review Research, 5 (1). ISSN 2643-1564

Acerbi, L, Aguillon-Rodriguez, V, Ahmadi, M, Amjad, J, Angelaki, D, Arlandis, J, Ashwood, ZC, Banga, K, Barrell, H, Bayer, HM, Benson, J, Benson, B, Bhagat, J, Birman, D, Bougrova, K, Boussard, J, Bruijns, SA, Carandini, M, Catarino, J, Cazettes, F, Dan, Y, Davatolagh, F, Dayan, P, Denève, S, Dong, LL, Engel, T, Fabbri, M, Fiete, I, Findling, C, Freitas-Silva, L, Ganguli, S, Gercek, B, Ghani, N, Gordeliy, I, Haetzel, LM, Hausser, M, Hiratani, N, Hofer, S, Hu, F, Huber, F, Hurwitz, C, Khanal, A, Krasniak, CS, Krishnagopal, S, Krumin, M, Langdon, C, Latham, P, Lau, P, Lee, H, Liu, A, Mainen, ZF, Vergara, HM, Mcgrory, C, McMannon, B, Meijer, GT, Melin, M, Meshulam, L, Miska, NJ, Mitelut, C, Mohammadi, Z, Mrsic-Flogel, T, Murakami, M, Noel, JP, Nylund, K, Vazquez, AP, Paninski, L, Pezzotta, A, Picard, S, Pillow, JW, Pouget, A, Roth, N, Roy, NA, Saniee, K, Schaeffer, R, Shi, Y, Socha, KZ, Soitu, C, Svoboda, K, Taheri, M, Tessereau, C, Urai, AE, Varol, E, Wells, MJ, Whiteway, MR, Windolf, C, Witten, I, Wool, LE, Zador, AM, Bonacchi, N, Chapuis, GA, Churchland, AK, DeWitt, EEJ, Faulkner, M, Harris, KD, Huntenburg, JM, Hunter, M, Laranjeira, IC, Rossant, C, Sasaki, M, Schartner, MM (January 2023) A modular architecture for organizing, processing and sharing neurophysiology data. Nature Methods, 20 (3). pp. 403-407. ISSN 1548-7091 (Public Dataset)

Cohen, Yarden, Engel, Tatiana A, Langdon, Christopher, Lindsay, Grace W, Ott, Torben, Peters, Megan AK, Shine, James M, Breton-Provencher, Vincent, Ramaswamy, Srikanth (November 2022) Recent Advances at the Interface of Neuroscience and Artificial Neural Networks. The Journal of Neuroscience, 42 (45). pp. 8514-8523. ISSN 1529-2401

Shi, Yan-Liang, Zeraati, Roxana, Levina, Anna, Engel, Tatiana A (July 2022) Spatial and temporal correlations in neural networks with structured connectivity. arXiv. (Submitted)

Engel, Tatiana (May 2022) Volatile neurons unite to stabilize visual experience. Nature, 605 (7911). pp. 625-626. ISSN 0028-0836

Zeraati, R, Engel, TA, Levina, A (March 2022) A flexible Bayesian framework for unbiased estimation of timescales. Nature Computational Science, 2 (3). pp. 193-204. ISSN 2662-8457

Shi, Yan-Liang, Steinmetz, Nicholas A, Moore, Tirin, Boahen, Kwabena, Engel, Tatiana A (January 2022) Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex. Nature Communications, 13 (1). p. 44. ISSN 2041-1723

Langdon, Christopher, Engel, Tatiana (2022) Latent circuit inference from heterogeneous neural responses during cognitive tasks. bioRxiv. (Submitted)

Roach, James, Churchland, Anne, Engel, Tatiana (2022) Two roles for choice selective inhibition in decision-making circuits. bioRxiv. (Submitted)

Engel, Tatiana A, Schölvinck, Marieke L, Lewis, Christopher M (October 2021) The diversity and specificity of functional connectivity across spatial and temporal scales. NeuroImage, 245. p. 118692. ISSN 1053-8119

Genkin, Mikhail, Hughes, Owen, Engel, Tatiana A (October 2021) Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories. Nature Communications, 12 (1). p. 5986. ISSN 2041-1723

Zeraati, Roxana, Shi, Yan-Liang, Steinmetz, Nicholas, Gieselmann, Marc, Thiele, Alexander, Moore, Tirin, Levina, Anna, Engel, Tatiana (2021) Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity. bioRxiv. (Submitted)

van Kempen, J., Gieselmann, M. A., Boyd, M., Steinmetz, N. A., Moore, T., Engel, T. A., Thiele, A. (December 2020) Top-down coordination of local cortical state during selective attention. Neuron. ISSN 0896-6273

Genkin, Mikhail, Engel, Tatiana A (October 2020) Moving beyond generalization to accurate interpretation of flexible models. Nature Machine Intelligence, 2 (11). pp. 674-683. ISSN 2522-5839

Zeraati, Roxana, Engel, T. A., Levina, Anna (August 2020) Estimation of autocorrelation timescales with Approximate Bayesian Computations. bioRxiv. (Unpublished)

van Kempen, Jochem, Gieselmann, M. A., Boyd, M., Steinmetz, Nicholas A., Moore, Tirin, Engel, Tatiana A, Thiele, A. (March 2020) Top-down coordination of local cortical state during selective attention. biorxiv. (Unpublished)

Genkin, Mikhail, Engel, Tatiana A (October 2019) Beyond generalization: Enhancing accurate interpretation of flexible models. bioRxiv. (Unpublished)

Engel, T. A., Steinmetz, N. A. (October 2019) New perspectives on dimensionality and variability from large-scale cortical dynamics. Curr Opin Neurobiol, 58. pp. 181-190. ISSN 0959-4388

Engel, T. A., Steinmetz, N. A., Gieselmann, M. A., Thiele, A., Moore, T., Boahen, K. (December 2016) Selective modulation of cortical state during spatial attention. Science, 354 (6316). pp. 1140-1144. ISSN 1095-9203 (Electronic)0036-8075 (Linking)

Engel, T. A., Chaisangmongkon, W., Freedman, D. J., Wang, X. J. (March 2015) Choice-correlated activity fluctuations underlie learning of neuronal category representation. Nat Commun, 6. p. 6454. ISSN 2041-1723 (Electronic)2041-1723 (Linking)

Rading, M. M., Engel, T. A., Lipowsky, R., Valleriani, A. (October 2011) Stationary Size Distributions of Growing Cells with Binary and Multiple Cell Division. Journal of Statistical Physics, 145 (1). pp. 1-22. ISSN 0022-4715

Engel, T. A., Wang, X. J. (May 2011) Same or different? A neural circuit mechanism of similarity-based pattern match decision making. J Neurosci, 31 (19). pp. 6982-96. ISSN 1529-2401 (Electronic)0270-6474 (Linking)

Engel, T., Andrieux, D. (2010) Forget before you remember: dynamic mechanism of memory decay and retrieval. Front Neurosci, 4 (3). p. 3. ISSN 1662-453X (Electronic)1662-453X (Linking)

Engel, T. A., Helbig, B., Russell, D. F., Schimansky-Geier, L., Neiman, A. B. (August 2009) Coherent stochastic oscillations enhance signal detection in spiking neurons. Phys Rev E Stat Nonlin Soft Matter Phys, 80 (2 Pt 1). 021919. ISSN 1539-3755 (Print)1539-3755 (Linking)

Engel, Tatiana, Wang, Xiao-Jing (2009) Category learning and decision making: a cortical circuit model. Frontiers in Systems Neuroscience. p. 55. ISSN 1662-5137

Neiman, Alexander, Engel, Tatiana, Russell, David, Helbig, Brian, Schimansky-Geier, Lutz (2009) Epithelial oscillations enhance signal detection in a peripheral sensory system. APS Meeting Abstracts.

Engel, T. A., Schimansky-Geier, L., Herz, A. V., Schreiber, S., Erchova, I. (September 2008) Subthreshold membrane-potential resonances shape spike-train patterns in the entorhinal cortex. J Neurophysiol, 100 (3). pp. 1576-89. ISSN 0022-3077 (Print)0022-3077 (Linking)

Neiman, Alexander, Engel, Tatiana (2008) Information transfer in ampullary electroreceptors. APS Meeting Abstracts.

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (May 2007) Interspike interval densities of resonate and fire neurons. Biosystems, 89 (1-3). pp. 63-8. ISSN 0303-2647 (Print)0303-2647 (Linking)

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (March 2006) First passage time densities in non-Markovian models with subthreshold oscillations. Europhysics Letters, 73 (5). pp. 691-697. ISSN 0295-5075

Verechtchaguina, T., Sokolov, I. M., Schimansky-Geier, L. (March 2006) First passage time densities in resonate-and-fire models. Phys Rev E Stat Nonlin Soft Matter Phys, 73 (3 Pt 1). 031108. ISSN 1539-3755 (Print)1539-3755 (Linking)

Verechtchaguina, T., Schimansky-Geier, L., Sokolov, I. M. (September 2004) Spectra and waiting-time densities in firing resonant and nonresonant neurons. Phys Rev E Stat Nonlin Soft Matter Phys, 70 (3 Pt 1). 031916. ISSN 1539-3755 (Print)1539-3755 (Linking)

Conference or Workshop Item

Bast, Walter G, Aghamohammadi, Cina, Gupta, Priyanka, Engel, Tatiana A, Albeanu, Dinu F (2023) An optogenetic stimulation approach to quantify the contribution of individual glomeruli to olfactory percepts. In: UNSPECIFIED.

Bhattasali, NX, Zador, AM, Engel, TA (January 2022) Neural Circuit Architectural Priors for Embodied Control. In: UNSPECIFIED.

Thesis

Engel, Tatiana (2007) Firing statistics in neurons as non-Markovian first passage time problem. PhD thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I.