Items where Subject is "microarray gene expression processing"

Paper

Baumbusch, L. O., Aaroe, J., Johansen, F. E., Hicks, J. B., Sun, H., Bruhn, L., Gunderson, K., Naume, B., Kristensen, V. N., Liestol, K., Borresen-Dale, A. L., Lingjaerde, O. C. (August 2008) Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors. BMC Genomics, 9. p. 379.

Benita, Y., Kikuchi, H., Smith, A. D., Zhang, M. Q., Chung, D. C., Xavier, R. J. (August 2009) An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. Nucleic Acids Res, 37 (14). 4587–4602.

Brooks, L., Strable, J., Zhang, X., Ohtsu, K., Zhou, R., Sarkar, A., Hargreaves, S., Elshire, R. J., Eudy, D., Pawlowska, T., Ware, D. H., Janick-Buckner, D., Buckner, B., Timmermans, M. C. P., Schnable, P. S., Nettleton, D., Scanlon, M. J. (May 2009) Microdissection of shoot meristem functional domains. PLoS Genet, 5 (5). e1000476.

Burbano, H. A., Hodges, E., Green, R. E., Briggs, A. W., Krause, J., Meyer, M., Good, J. M., Maricic, T., Johnson, P. L. F., Xuan, Z. Y., Rooks, M., Bhattacharjee, A., Brizuela, L., Albert, F. W., De La Rasilla, M., Fortea, J., Rosas, A., Lachmann, M., Hannon, G. J., Paabo, S. (May 2010) Targeted investigation of the neandertal genome by array-based sequence capture. Science, 328 (5979). pp. 723-725.

Cawley, S., Bekiranov, S., Ng, H. H., Kapranov, P., Sekinger, E. A., Kampa, D., Piccolboni, A., Sementchenko, V., Cheng, J., Williams, A. J., Wheeler, R., Wong, B., Drenkow, J., Yamanaka, M., Patel, S., Brubaker, S., Tammana, H., Helt, G., Struhl, K., Gingeras, T. R. (2004) Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs. Cell, 116 (4). pp. 499-509. ISSN 0092-8674

Chen, N., Stein, L. D. (May 2006) Conservation and functional significance of gene topology in the genome of Caenorhabditis elegans. Genome Res, 16 (5). pp. 606-17. ISSN 1088-9051 (Print)

Cherepinsky, V., Feng, J. W., Rejali, M., Mishra, B. (August 2003) Shrinkage-based similarity metric for cluster analysis of microarray data. Proceedings of the National Academy of Sciences of the United States of America, 100 (17). pp. 9668-9673. ISSN 0027-8424

Cheung, W., Bluth, M. J., Johns, C., Khan, S., Lin, Y. Y., Bluth, M. H. (April 2010) Peripheral Blood Mononuclear Cell Gene Array Profiles in Patients With Overactive Bladder. Urology, 75 (4). pp. 896-901.

Dalma-Weiszhausz, D. D., Chicurel, M. E., Gingeras, T. R. (2002) Microarrays and genetic epidemiology: A multipurpose tool for a multifaceted field. Genetic Epidemiology, 23 (1). pp. 4-20. ISSN 07410395 (ISSN)

Djebali, S., Kapranov, P., Foissac, S., Lagarde, J., Reymond, A., Ucla, C., Wyss, C., Drenkow, J., Dumais, E., Murray, R. R., Lin, C., Szeto, D., Denoeud, F., Calvo, M., Frankish, A., Harrow, J., Makrythanasis, P., Vidal, M., Salehi-Ashtiani, K., Antonarakis, S. E., Gingeras, T. R., Guigo, R. (2008) Efficient targeted transcript discovery via array-based normalization of RACE libraries. Nature Methods, 5 (7). pp. 629-35. ISSN 15487091 (ISSN) (Public Dataset)

Docquier, A., Harmand, P. O., Fritsch, S., Chanrion, M., Darbon, J. M., Cavailles, V. (June 2010) The transcriptional coregulator RIP140 represses E2F1 activity and discriminates breast cancer subtypes. Clinical Cancer Research, 16 (11). pp. 2959-2970.

Dong, S. L., Wang, E., Hsie, L., Cao, Y. X., Chen, X. G., Gingeras, T. R. (August 2001) Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation. Genome Research, 11 (8). pp. 1418-1424. ISSN 1088-9051

Egan, C. M., Sridhar, S., Wigler, M. H., Hall, I. M. (November 2007) Recurrent DNA copy number variation in the laboratory mouse. Nat Genet, 39 (11). pp. 1384-9. ISSN 1061-4036 (Print)

Farrar, J. E., Nater, M., Caywood, E., McDevitt, M. A., Kowalski, J., Takemoto, C. M., Talbot, C. C., Meltzer, P., Esposito, D., Beggs, A. H., Schneider, H. E., Grabowska, A., Ball, S. E., Niewiadomska, E., Sieff, C. A., Vlachos, A., Atsidaftos, E., Ellis, S. R., Lipton, J. M., Gazda, H. T., Areci, R. J. (September 2008) Abnormalities of the large ribosomal subunit protein, Rp135a, in Diamond-Blackfan anemia. Blood, 112 (5). pp. 1582-1592. ISSN 0006-4971

Fernald, G. H., Knott, S., Pachner, A., Caillier, S. J., Narayan, K., Oksenberg, J. R., Mousavi, P., Baranzini, S. E. (April 2007) Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans. J Immunol, 178 (8). pp. 5076-85. ISSN 0022-1767 (Print)0022-1767

Fu, B., Luo, M., Lakkur, S., Lucito, R., Iacobuzio-Donahue, C. A. (October 2008) Frequent genomic copy number gain and overexpression of GATA-6 in pancreatic carcinoma. Cancer Biol Ther, 7 (10). pp. 1593-601.

Gendrel, A. V., Lippman, Z. , Martienssen, R., Colot, V. (March 2005) Profiling histone modification patterns in plants using genomic tiling microarrays. Nature Methods, 2 (3). pp. 213-218. ISSN 1548-7091

Getz, G., Levine, E., Domany, E., Zhang, M. Q. (May 2000) Super-paramagnetic clustering of yeast gene expression profiles. Physica A: Statistical Mechanics and its Applications, 279 (1-4). pp. 457-464. ISSN 03784371 (ISSN)

Ghosh, S., Hirsch, H. A., Sekinger, E., Struhl, K., Gingeras, T. R. (October 2006) Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments. BMC Bioinformatics, 7. ISSN 1471-2105

Ghosh, S., Hirsch, H. A., Sekinger, E. A., Kapranov, P., Struhl, K., Gingeras, T. R. (2007) Differential analysis for high density tiling microarray data. BMC Bioinformatics, 8. ISSN 14712105 (ISSN)

Gingeras, T. R. (2004) RNA reference materials for gene expression studies. Difficult first steps. Clinical Chemistry, 50 (8). pp. 1289-1290. ISSN 00099147 (ISSN)

Gingeras, T. R. (May 2000) Using high-density oligonucleotide arrays in hypothesis- and discovery-driven studies of selected host-pathogen interactions. Faseb Journal, 14 (8). A1584-A1584. ISSN 0892-6638

Gingeras, T. R., Ghandour, G., Wang, E., Berno, A., Small, P. M., Drobniewski, F., Alland, D., Desmond, E., Holodniy, M., Drenkow, J. (1998) Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays. Genome Research, 8 (5). pp. 435-448. ISSN 10889051 (ISSN) (Public Dataset)

Gingeras, T. R., Rosenow, C. (August 2000) Studying microbial genomes with high-density oligonucleotide arrays. ASM News, 66 (8). pp. 463-469. ISSN 0044-7897

Grubor, V., Krasnitz, A., Troge, J. E., Meth, J. L., Lakshmi, B., Kendall, J. T., Yamrom, B., Alex, G., Pai, D., Navin, N. E., Hufnagel, L. A., Lee, Y. H., Cook, K., Allen, S. L., Rai, K. R., Damle, R. N., Calissano, C., Chiorazzi, N., Wigler, M. H., Esposito, D. (February 2009) Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA). Blood, 113 (6). pp. 1294-1303. ISSN 0006-4971

Grubor, V. D., Troge, J. E., Meth, J. L., Lakshmi, B., Yamron, B., Hufnagel, L. A., Lee, Y. H., Kendall, J. T., Pai, D., Lee, A., Gregersen, P., Yancopoulos, S., Allen, S., Rai, K. R., Chiorazzi, N., Wigler, M. H., Esposito, D. (November 2006) Genome Analysis of CLL by Representational Oligonucleotide Microarray Analysis (ROMA). ASH Annual Meeting Abstracts, 108 (11). p. 2085.

Gupta, L., Kumar, S., Singh, R., Shaik, R., Dimitrova, N., Gorthi, A., Lakshmi, B., Pai, D., Kamalakaran, S., Zhao, X., Wigler, M. H. (December 2008) Classification method for microarray probe selection using sequence, thermodynamics and secondary structure parameters. 19th International Conference on Pattern Recognition. ISSN 1051-4651

Hacker, C., Thomas, D., Doshi, J., Kimberly, R. P., Gingeras, T. R., Patil, N. (October 2000) Single nucleotide polymorphism discovery in candidate genes for rheumatoid arthritis. American Journal of Human Genetics, 67 (4). p. 335. ISSN 0002-9297

Harada, N., Hatchwell, E., Okamoto, N., Tsukahara, M., Kurosawa, K., Kawame, H., Kondoh, T., Ohashi, H., Tsukino, R., Kondoh, Y., Shimokawa, O., Ida, T., Nagai, T., Fukushima, Y., Yoshiura, K., Niikawa, N., Matsumoto, N. (February 2004) Subtelomere specific microarray based comparative genomic hybridisation: a rapid detection system for cryptic rearrangements in idiopathic mental retardation. Journal of Medical Genetics, 41 (2). pp. 130-136. ISSN 1468-6244

He, F., Yoo, S., Wang, D., Kumari, S., Gerstein, M., Ware, D., Maslov, S. (June 2016) Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis. Plant J, 86 (6). pp. 472-80. ISSN 1365-313X (Electronic)0960-7412 (Linking)

He, H., Roschke, A., Yonescu, R., Hatchwell, E., Ried, T., Kirsch, I. (November 2003) Genome-wide analysis of genetic alterations in tumor cell lines by Ccap BAC microarray. American Journal of Human Genetics, 73 (5). p. 254. ISSN 0002-9297

Henry, G. L., Zito, K., Dubnau, J. T. (October 2003) Chipping away at brain function: mining for insights with microarrays. Current Opinion in Neurobiology, 13 (5). pp. 570-576. ISSN 0959-4388

Hodges, E., Rooks, M., Xuan, Z., Bhattacharjee, A., Gordon, D. B., Brizuela, L., McCombie, W. R., Hannon, G. J. (May 2009) Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing. Nature Protocols, 4 (6). pp. 960-974. ISSN 1754-2189

Hsu, Y. B., Huang, C. F., Lin, K. T., Kuo, Y. L., Lan, M. C., Lan, M. Y. (June 2019) Podoplanin, a Potential Therapeutic Target for Nasopharyngeal Carcinoma. Biomed Res Int, 2019. p. 7457013.

Jeon, Y., Bekiranov, S., Karnani, N., Kapranov, P., Ghosh, S., MacAlpine, D., Lee, C., Deog, S. H., Gingeras, T. R., Dutta, A. (2005) Temporal profile of replication of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America, 102 (18). pp. 6419-6424. ISSN 00278424 (ISSN)

Jobanputra, V., Sebat, J., Troge, J., Chung, W., Anyane-Yeboa, K., Wigler, M. H., Warburton, D. (February 2005) Application of ROMA (representational oligonucleotide microarray analysis) to patients with cytogenetic rearrangements. Genetics in Medicine, 7 (2). pp. 111-118. ISSN 1098-3600

Johnson, D. S., Li, W., Gordon, D. B., Bhattacharjee, A., Curry, B., Ghosh, J., Brizuela, L., Carroll, J. S., Brown, M., Flicek, P., Koch, C. M., Dunham, I., Bieda, M., Xu, X., Farnham, P. J., Kapranov, P., Nix, D. A., Gingeras, T. R., Zhang, X., Holster, H., Jiang, N., Green, R. D., Song, J. S., McCuine, S. A., Anton, E., Nguyen, L., Trinklein, N. D., Ye, Z., Ching, K., Hawkins, D., Ren, B., Scacheri, P. C., Rozowsky, J., Karpikov, A., Euskirchen, G., Weissman, S., Gerstein, M., Snyder, M., Yang, A., Moqtaderi, Z., Hirsch, H., Shulha, H. P., Fu, Y., Weng, Z., Struhl, K., Myers, R. M., Lieb, J. D., Liu, X. S. (2008) Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Research, 18 (3). pp. 393-403. ISSN 10889051 (ISSN) (Public Dataset)

Kamalakaran, S., Kendall, J. T., Zhao, X., Tang, C., Khan, S., Ravi, K., Auletta, T., Riggs, M., Wang, Y., Helland, A., Naume, Bj., Dimitrova, N., Borresen-Dale, A.. L., Hicks, J. B., Lucito, R. (July 2009) Methylation detection oligonucleotide microarray analysis: a high-resolution method for detection of CpG island methylation. Nucl. Acids Res., 37 (12). e89.

Kani, K., Sordella, R., Mallick, P. (2012) Investigation of acquired resistance to EGFR-targeted therapies in lung cancer using cDNA microarrays. Methods in Molecular Biology, 795. pp. 233-53. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Kapranov, P., Sementchenko, V. I., Gingeras, T. R. (April 2003) Beyond expression profiling: next generation uses of high density oligonucleotide arrays. Briefings in Functional Genomics & Proteomics, 2 (1). pp. 47-56. ISSN 1473-9550 (Print)1473-9550

Kato-Maeda, M., Rhee, J. T., Gingeras, T. R., Salamon, H., Drenkow, J., Smittipat, N., Small, P. M. (2001) Comparing genomes within the species Mycobacterium tuberculosis. Genome Research, 11 (4). pp. 547-554. ISSN 10889051 (ISSN) (Public Dataset)

Kozal, M. J., Shah, N., Shen, N., Yang, R., Fucini, R., Merigan, T. C., Richman, D. D., Morris, D., Hubbell, E., Chee, M., Gingeras, T. R. (1996) Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nature Medicine, 2 (7). pp. 753-759. ISSN 10788956 (ISSN)

Lakshmi, B., Hall, I. M., Egan, C., Alexander, J., Leotta, A., Healy, J., Zender, L., Spector, M. S., Xue, W., Lowe, S. W., Wigler, M. H., Lucito, R. (July 2006) Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens. Proc Natl Acad Sci U S A, 103 (30). pp. 11234-9. ISSN 0027-8424 (Print)

Lindblad-Toh, K., Winchester, E., Daly, M. J., Wang, D. G., Hirschhorn, J. N., Laviolette, J. P., Ardlie, K., Reich, D. E., Robinson, E., Sklar, P., Shah, N., Thomas, D., Fan, J. B., Gingeras, T. R., Warrington, J., Patil, N., Hudson, T. J., Lander, E. S. (2000) Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse. Nature Genetics, 24 (4). pp. 381-386. ISSN 10614036 (ISSN)

Lippman, Z. B., Gendrel, A. V., Colot, V., Martienssen, R. A. (March 2005) Profiling DNA methylation patterns using genomic tiling microarrays. Nat Methods, 2 (3). pp. 219-24. ISSN 1548-7091 (Print)

Lipshutz, R. J., Fodor, S. P. A., Gingeras, T. R., Lockhart, D. J. (1999) High density synthetic oligonucleotide arrays. Nature Genetics, 21 (1 SUPP). pp. 20-24. ISSN 10614036 (ISSN)

Liu-Sullivan, N., Zhang, J., Bakleh, A., Marchica, J., Li, J., Siolas, D., Laquerre, S., Degenhardt, Y. Y., Wooster, R., Chang, K., Hannon, G. J., Powers, S. (December 2011) Pooled shRNA screen for sensitizers to inhibition of the mitotic regulator polo-like kinase (PLK1). Oncotarget, 2 (12). pp. 1254-64. ISSN 1949-2553 (Electronic) 1949-2553 (Linking)

Lucito, R., Healy, J., Alexander, J., Reiner, A., Esposito, D., Chi, M. Y., Rodgers, L., Brady, A., Sebat, J., Troge, J. E., West, J. A., Rostan, S., Nguyen, K. C. Q., Powers, S., Ye, K. Q., Olshen, A., Venkatraman, E., Norton, L., Wigler, M. H. (October 2003) Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation. Genome Research, 13 (10). pp. 2291-2305. ISSN 1088-9051

Lucito, R., West, J., Reiner, A., Alexander, J., Esposito, D., Mishra, B., Powers, S., Norton, L., Wigler, M. H. (November 2000) Detecting gene copy number fluctuations in tumor cells by microarray analysis of genomic representations. Genome Research, 10 (11). pp. 1726-1736. ISSN 1088-9051

Martienssen, Robert A., Doerge, R. W., Colot, Vincent (2005) Epigenomic mapping in Arabidopsis using tiling microarrays. Chromosome Res, 13 (3). pp. 299-308. ISSN 0967-3849 (Print)

McArthur, H. L., Brogi, E., Patil, S., Wigler, M. H., Norton, L., Hicks, J. B., Hudis, C. A. (September 2009) High resolution microarray copy number analysis (array CGH) suggests that determination of HER2 amplification by FISH (FISH plus ) is inaccurate in human breast cancer specimens that are HER2 2+by immunohistochemistry (IHC2+). European Journal of Cancer Supplements, 7 (2). p. 88. ISSN 1359-6349

Mistry, M., Gillis, J., Pavlidis, P. (September 2013) Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls. BMC Neuroscience, 14 (1). p. 105. ISSN 1471-2202

Mitra, R., Bandyopadhyay, S., Maulik, U., Zhang, M. Q. (January 2010) SFSSClass: an integrated approach for miRNA based tumor classification. BMC Bioinformatics, 11(S1). S22. ISSN 1471-2105

Mittal, V., Nolan, D. J. (March 2007) Genomics and proteomics approaches in understanding tumor angiogenesis. Expert Rev Mol Diagn, 7 (2). pp. 133-147. ISSN 1744-8352 (Electronic)

Navin, N. E., Hicks, J. B. (May 2010) Tracing the tumor lineage. Molecular Oncology. ISSN 1878-0261 (Electronic) 1574-7891 (Linking)

Niida, A., Smith, A. D., Imoto, S., Aburatani, H., Zhang, M. Q., Akiyama, T. (February 2009) Gene set-based module discovery in the breast cancer transcriptome. BMC Bioinformatics, 10. p. 71. ISSN 1471-2105

Olshen, A. B., Venkatraman, E. S., Lucito, R., Wigler, M. H. (October 2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics, 5 (4). pp. 557-572. ISSN 1465-4644

Ronemus, M., Vaughn, M. W., Martienssen, R. A. (July 2006) MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell, 18 (7). pp. 1559-74. ISSN 1040-4651 (Print)

Rosenow, C., Saxena, R. M., Durst, M., Gingeras, T. R. (2001) Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches. Nucleic Acids Research, 29 (22). ISSN 13624962 (ISSN)

Sasaki, D., Kondo, S., Maeda, N., Gingeras, T. R., Hasegawa, Y., Hayashizaki, Y. (2007) Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: Causes of signal variation and false positive signals. Genomics, 89 (4). pp. 541-551. ISSN 08887543 (ISSN)

Schatz, M. C., Phillippy, A. M., Gajer, P., DeSantis, T. Z., Andersen, G. L., Ravel, J. (2010) Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray. Applied and Environmental Microbiology, 76 (16). pp. 5636-5638. ISSN 00992240 (ISSN)

Schumacher, A., Kapranov, P., Kaminsky, Z., Flanagan, J., Assadzadeh, A., Yau, P., Virtanen, C., Winegarden, N., Cheng, J., Gingeras, T., Petronis, A. (2006) Microarray-based DNA methylation profiling: Technology and applications. Nucleic Acids Research, 34 (2). pp. 528-542. ISSN 03051048 (ISSN)

Sebat, J. L., Colwell, F. S., Crawford, R. L. (August 2003) Metagenomic profiling: microarray analysis of an environmental genomic library. Applied and Environmental Microbiology, 69 (8). pp. 4927-34. ISSN 00992240 (ISSN)

Shi, S., Nathan, C., Schnappinger, D., Drenkow, J., Fuortes, M., Block, E., Ding, A., Gingeras, T. R., Schoolnik, G., Akira, S., Takeda, K., Ehrt, S. (2003) MyD88 primes macrophages for full-scale activation by interferon-γ yet mediates few responses to Mycobacterium tuberculosis. Journal of Experimental Medicine, 198 (7). pp. 987-997. ISSN 00221007 (ISSN)

Stein, L. D. (May 2001) Genetic analyses on DNA microarrays. Curr Protoc Hum Genet, Chapte. Unit 11 .01.

Stewart, D. J. (January 2000) Making and using DNA microarrays: A short course at Cold Spring Harbor Laboratory. Genome Research, 10 (1). pp. 1-3. ISSN 1088-9051

Stolarov, J., Chang, K., Reiner, A., Rodgers, L., Hannon, G. J., Wigler, M. H., Mittal, V. (November 2001) Design of a retroviral-mediated ecdysone-inducible system and its application to the expression profiling of the PTEN tumor suppressor. Proceedings of the National Academy of Sciences of the United States of America, 98 (23). pp. 13043-13048. ISSN 0027-8424

Sugino, K., Hempel, C. M., Miller, M. N., Hattox, A. M., Shapiro, P., Wu, C., Huang, Z. J., Nelson, S. B. (2006) Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nature Neuroscience, 9 (1). pp. 99-107. ISSN 10976256

Sunwoo, H., Dinger, M. E., Wilusz, J. E., Amaral, P. P., Mattick, J. S., Spector, D. L. (March 2009) MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Research, 19 (3). pp. 347-359. ISSN 10889051 (ISSN)

Thomas, R., Rebbeck, C. A., Leroi, A. M., Burt, A., Breen, M. (October 2009) Extensive conservation of genomic imbalances in canine transmissible venereal tumors (CTVT) detected by microarray-based CGH analysis. Chromosome Research, 17 (7). pp. 927-934. ISSN 0967-3849

Tolonen, A. C., Albeanu, D. F., Corbett, J. F., Handley, H., Henson, C., Malik, P. (October 2002) Optimized in situ construction of oligomers on an array surface. Nucleic Acids Research, 30 (20). e107. ISSN 0305-1048

Yang, A., Zhu, Z., Kapranov, P., McKeon, F., Church, G. M., Gingeras, T. R., Struhl, K. (2006) Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Molecular Cell, 24 (4). pp. 593-602. ISSN 10972765 (ISSN)

Zhang, C., Lu, X., Zhang, X. (July 2006) Significance of gene ranking for classification of microarray samples. IEEE/ACM Trans Comput Biol Bioinform, 3 (3). pp. 312-20. ISSN 1545-5963 (Print)

Zhang, M. Q. (October 2002) Extracting functional information from microarrays: A challenge for functional genomics. Proceedings of the National Academy of Sciences of the United States of America, 99 (20). pp. 12509-12511. ISSN 0027-8424

Zhang, X., Madi, S., Borsuk, L., Nettleton, D., Elshire, R. J., Buckner, B., Janick-Buckner, D., Beck, J., Timmermans, M. C. P., Schnable, P. S., Scanlon, M. J. (June 2007) Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. Plos Genetics, 3 (6). pp. 1040-1052. ISSN 1553-7390

Zhong, J., Zhang, T., Bloch, L. M. (February 2006) Dendritic mRNAs encode diversified functionalities in hippocampal pyramidal neurons. BMC Neuroscience, 7. p. 17. ISSN 14712202

Zhu, H., Cong, J. P., Mamtora, G., Gingeras, T. R., Shenk, T. (1998) Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America, 95 (24). pp. 14470-14475. ISSN 00278424 (ISSN) (Public Dataset)

Zhu, H., Cong, J. P., Mamtora, G., Gingeras, T. R., Shenk, T. (1998) Use of differential display and dna array technology to assess the effect of human cytomegalovirus infection on signal transduction pathways. Faseb Journal, 12 (8). ISSN 08926638 (ISSN)

Book Section

Lucito, R., Wigler, M. H. (2003) Preparation of slides and hybridization. In: DNA microarrays : a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 394-399. ISBN 0879696257

Mack, D. H., Tom, E. Y., Mahadev, M., Dong, H., Mittmann, M., Dee, S., Levine, A. J., Gingeras, T. R., Lockhart, D. L. (1998) Deciphering Molecular Circuitry using high-density DNA arrays. In: The Biology of Tumors. Springer, New York, pp. 85-108. ISBN 9780306459320

Conference or Workshop Item

Zhu, J., Zhang, M. Q. (January 2000) Cluster, function and promoter: analysis of yeast expression array. In: Pacific Symposium on Biocomputing.