Items where Subject is "tomato"

Paper

Aguirre, Lyndsey, Hendelman, Anat, Hutton, Samuel F, McCandlish, David M, Lippman, Zachary B (October 2023) Idiosyncratic and dose-dependent epistasis drives variation in tomato fruit size. Science, 382 (6668). pp. 315-320. ISSN 0036-8075

Alonge, M., Soyk, S., Ramakrishnan, S., Wang, X., Goodwin, S., Sedlazeck, F. J., Lippman, Z. B., Schatz, M. C. (October 2019) RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biol, 20 (1). p. 224. ISSN 1474-7596 (Public Dataset)

Alonge, Michael, Lebeigle, Ludivine, Kirsche, Melanie, Aganezov, Sergey, Wang, Xingang, Lippman, Zachary, Schatz, Michael, Soyk, Sebastian (November 2021) Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing. bioRxiv. (Unpublished)

Alonge, Michael, Lebeigle, Ludivine, Kirsche, Melanie, Jenike, Katie, Ou, Shujun, Aganezov, Sergey, Wang, Xingang, Lippman, Zachary B, Schatz, Michael C, Soyk, Sebastian (December 2022) Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing. Genome Biology, 23 (1). p. 258. ISSN 1474-7596

Benoit, M., Drost, H. G., Catoni, M., Gouil, Q., Lopez-Gomollon, S., Baulcombe, D., Paszkowski, J. (September 2019) Environmental and epigenetic regulation of Rider retrotransposons in tomato. PLoS Genet, 15 (9). e1008370. ISSN 1553-7390

Benoit, Matthias (August 2021) From Non-self to Self: Stepwise Mutations in Transcription Factors Promote the Transition to Self-Pollination in Tomato. The Plant Cell. ISSN 1532-298X

Brooks, C., Nekrasov, V., Lippman, Z., Van Eck, J. (September 2014) Efficient gene editing in tomato in the first generation using the CRISPR/Cas9 system. Plant Physiology, 166 (3). pp. 1292-1297. ISSN 0032-0889

Hendelman, Anat, Zebell, Sophia, Rodriguez-Leal, Daniel, Dukler, Noah, Robitaille, Gina, Wu, Xuelin, Kostyun, Jamie, Tal, Lior, Wang, Peipei, Bartlett, Madelaine E, Eshed, Yuval, Efroni, Idan, Lippman, Zachary B (April 2021) Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection. Cell, 184 (7). 1724-1739.e16. ISSN 0092-8674

Huang, Xiaozhen, Tang, Lingli, Yu, Yuan, Dalrymple, Justin, Lippman, Zachary B., Xu, Cao (May 2018) Control of flowering and inflorescence architecture in tomato by synergistic interactions between ALOG transcription factors. Journal of Genetics and Genomics, 45 (10). pp. 557-560. ISSN 1673-8527

Jiang, K., Liberatore, K. L., Park, S. J., Alvarez, J. P., Lippman, Z. B. (December 2013) Tomato yield heterosis is triggered by a dosage sensitivity of the florigen pathway that fine-tunes shoot architecture. PLoS Genetics, 9 (12). e1004043. ISSN 1553-7390

Krieger, U., Lippman, Z. B., Zamir, D. (March 2010) The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nature Genetics, 42 (5). pp. 459-463.

Kwon, C. T., Heo, J., Lemmon, Z. H., Capua, Y., Hutton, S. F., Van Eck, J., Park, S. J., Lippman, Z. B. (December 2019) Rapid customization of Solanaceae fruit crops for urban agriculture. Nat Biotechnol, 38. pp. 182-188. ISSN 1087-0156

Kwon, Choon-Tak, Tang, Lingli, Wang, Xingang, Gentile, Iacopo, Hendelman, Anat, Robitaille, Gina, Van Eck, Joyce, Xu, Cao, Lippman, Zachary B (March 2022) Dynamic evolution of small signalling peptide compensation in plant stem cell control. Nature Plants. ISSN 2055-0278

Lanctot, Amy (June 2022) The time is ripe for eQTLs: Transcriptomic identification of a tomato fruit ripening regulator. Plant Physiology. kiac287. ISSN 0032-0889

Lemmon, Z. H., Park, S. J., Jiang, K., Van Eck, J., Schatz, M. C., Lippman, Z. B. (November 2016) The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation. Genome Res, 26 (12). pp. 1676-1686. ISSN 1549-5469 (Electronic)1088-9051 (Linking) (Public Dataset)

Lemmon, Z. H., Reem, N. T., Dalrymple, J., Soyk, S., Swartwood, K. E., Rodriguez-Leal, D., Van Eck, J., Lippman, Z. B. (October 2018) Rapid improvement of domestication traits in an orphan crop by genome editing. Nature Plants, 4 (10). pp. 766-770. ISSN 20550278 (ISSN)

Lippman, Z. B., Cohen, O., Alvarez, J. P., Abu-Abied, M., Pekker, I., Paran, I., Eshed, Y., Zamir, D. (November 2008) The Making of a Compound Inflorescence in Tomato and Related Nightshades. PLoS Biology, 6 (11). e288.

Macalister, C. A., Park, S. J., Jiang, K., Marcel, F., Bendahmane, A., Izkovich, Y., Eshed, Y., Lippman, Z. B. (November 2012) Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene. Nat Genet. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Omary, Moutasem, Gil-Yarom, Naama, Yahav, Chen, Steiner, Evyatar, Hendelman, Anat, Efroni, Idan (March 2022) A conserved superlocus regulates above- and belowground root initiation. Science, 375 (6584). eabf4368. ISSN 0036-8075

Park, S. J., Jiang, K., Tal, L., Yichie, Y., Gar, O., Zamir, D., Eshed, Y., Lippman, Z. B. (November 2014) Optimization of crop productivity in tomato using induced mutations in the florigen pathway. Nature Genetics, 46 (12). pp. 1337-1342. ISSN 1061-4036

Parrine, D., Wu, B. S., Muhammad, B., Rivera, K., Pappin, D., Zhao, X., Lefsrud, M. (November 2018) Proteome modifications on tomato under extreme high light induced-stress. Proteome Science, 16 (1). Article no 20. ISSN 14775956 (ISSN)

Pereira, L, Sapkota, M, Alonge, M, Zheng, Y, Zhang, Y, Razifard, H, Taitano, NK, Schatz, MC, Fernie, AR, Wang, Y, Fei, Z, Caicedo, AL, Tieman, DM, van der Knaap, E (June 2021) Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science, 12. ISSN 1664-462X

Rodriguez-Leal, D., Xu, C., Kwon, C. T., Soyars, C., Demesa-Arevalo, E., Man, J., Liu, L., Lemmon, Z. H., Jones, D. S., Van Eck, J., Jackson, D. P., Bartlett, M. E., Nimchuk, Z. L., Lippman, Z. B. (April 2019) Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nat Genet, 51 (5). pp. 786-792. ISSN 1061-4036

Rodríguez-Leal, Daniel, Lemmon, Zachary H., Man, Jarrett, Bartlett, Madelaine E., Lippman, Zachary B. (October 2017) Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing. Cell, 171 (2). pp. 470-80. ISSN 0092-8674

Rosado, Daniele, Ackermann, Amanda, Spassibojko, Olya, Rossi, Magdalena, Pedmale, Ullas V (October 2021) WRKY transcription factors and ethylene signaling modify root growth during the shade avoidance response. Plant Physiology. ISSN 1532-2548

Scolnik, P. A., Hinton, P., Greenblatt, I. M., Giuliano, G., Delanoy, M. R., Spector, D. L., Pollock, D. (May 1987) Somatic instability of carotenoid biosynthesis in the tomato ghost mutant and its effect on plastid development. Planta, 171 (1). pp. 11-8. ISSN 0032-0935 (Print)0032-0935

Somssich, M., Je, B. I., Simon, R., Jackson, D. (September 2016) CLAVATA-WUSCHEL signaling in the shoot meristem. Development, 143 (18). pp. 3238-48. ISSN 1477-9129 (Electronic)0950-1991 (Linking)

Soyk, S., Lemmon, Z. H., Sedlazeck, F. J., Jimenez-Gomez, J. M., Alonge, M., Hutton, S. F., Van Eck, J., Schatz, M. C., Lippman, Z. B. (July 2019) Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat Plants. ISSN 2055-0278

Soyk, S., Lemmon, Z. H., Sedlazeck, F. J., Jimenez-Gomez, J. M., Alonge, M., Hutton, S. F., Van Eck, J., Schatz, M. C., Lippman, Z. B. (May 2019) Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nat Plants, 5 (5). pp. 471-497. ISSN 2055-0278

Soyk, S., Muller, N. A., Park, S. J., Schmalenbach, I., Jiang, K., Hayama, R., Zhang, L., Van Eck, J., Jimenez-Gomez, J. M., Lippman, Z. B. (January 2017) Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nat Genet, 49 (1). pp. 162-168. ISSN 1546-1718 (Electronic)1061-4036 (Linking) (Public Dataset)

Soyk, Sebastian, Lemmon, Zachary H., Oved, Matan, Fisher, Josef, Liberatore, Katie L., Park, Soon Ju, Goren, Anna, Jiang, Ke, Ramos, Alexis, van der Knaap, Esther, Van Eck, Joyce, Zamir, Dani, Eshed, Yuval, Lippman, Zachary B. (June 2017) Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 169 (6). pp. 1142-1155. ISSN 0092-8674

Tran, Thu M, Billakurthi, Kumari (May 2024) Tomato FW2.2/CNR might regulate fruit size via plasmodesmata callose deposition. Plant Physiology. kiae251. ISSN 0032-0889

Wang, Xingang, Aguirre, Lyndsey, Rodríguez-Leal, Daniel, Hendelman, Anat, Benoit, Matthias, Lippman, Zachary B (April 2021) Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit. Nature Plants, 7 (4). pp. 419-427. ISSN 2055-026X

Wu, Q., Hu, Y., Sprague, S. A., Kakeshpour, T., Park, J., Nakata, P. A., Cheng, N., Hirschi, K. D., White, F. F., Park, S. (September 2017) Expression of a monothiol glutaredoxin, AtGRXS17, in tomato (Solanum lycopersicum) enhances drought tolerance. Biochem Biophys Res Commun, 491 (4). pp. 1034-1039. ISSN 0006-291x

Xu, C., Liberatore, K. L., MacAlister, C. A., Huang, Z., Chu, Y. H., Jiang, K., Brooks, C., Ogawa-Ohnishi, M., Xiong, G., Pauly, M., Van Eck, J., Matsubayashi, Y., van der Knaap, E., Lippman, Z. B. (July 2015) A cascade of arabinosyltransferases controls shoot meristem size in tomato. Nat Genet, 47 (7). pp. 784-792. ISSN 1546-1718 (Electronic)1061-4036 (Linking)

Xu, C., Park, S. J., Van Eck, J., Lippman, Z. B. (September 2016) Control of inflorescence architecture in tomato by BTB/POZ transcriptional regulators. Genes Dev, 30 (18). pp. 2048-2061. ISSN 0890-9369 (Print)0890-9369 (Linking)

van der Knaap, E., Lippman, Z. B., Tanksley, S. D. (February 2002) Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions. Theoretical and Applied Genetics, 104 (2-3). pp. 241-247. ISSN 0040-5752

Conference or Workshop Item

Van Eck, J, Brooks, C, Nekrasov, V, Lippman, Z (May 2015) Application of CRISPR/Cas9 Technology for Characterization of Developmental Genes in Tomato. In: In Vitro Biology Meeting.

Thesis

Aguirre, Lyndsey (March 2023) Dissection of Quantitative Epistasis in Tomato Meristem Development. PhD thesis, Cold Spring Harbor Laboratory.

Ciren, Danielle (February 2024) Decoding cis-regulatory control and evolution of conserved and divergent phenotypes in plants. PhD thesis, Cold Spring Harbor Laboratory.

Video

Lippman, Z. (November 2012) Talk from Zach Lippman at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)