Items where Subject is "Investigative techniques and equipment > spectroscopy > mass spectrometry"

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Number of items at this level: 36.

A

Amid, C., Frankish, A., Aken, B., Ezkurdia, I., Kokocinsk, F., Gilbert, J., White, S., Carninci, P., Gingeras, T. R., Guigo, R., Searle, S., Tress, M. L., Harrow, J., Hubbard, T. (2010) From identification to validation to gene count. Genome Biology, 11 (Suppl ). ISSN 1474-760X

B

Bartlet-Jones, M., Jeffery, W. A., Hansen, H. F., Pappin, D. J. (1994) Peptide ladder sequencing by mass spectrometry using a novel, volatile degradation reagent. Rapid Commun Mass Spectrom, 8 (9). pp. 737-42. ISSN 0951-4198 (Print)0951-4198 (Linking)

Bish, Rebecca A., Myers, Michael P. (2007) Werner helicase interacting protein 1 (WRNIP1) binds polyubiquitin via its zinc finger domain. J Biol Chem, 282 (32). pp. 23184-23193. ISSN 0021-9258 (Print)

Boersema, P. J., Taouatas, N., Altelaar, A. F. M., Gouw, J. W., Ross, P. L., Pappin, D. J., Heck, A. J. R., Mohammed, S. (2009) Straightforward and de Novo Peptide Sequencing by MALDI-MS/MS Using a Lys-N Metalloendopeptidase. Molecular & Cellular Proteomics, 8 (4). pp. 650-660. ISSN 1535-9476

C

Cai, L., Harris, W. R., Marshak, D. R., Gross, J., Crabb, J. W. (1990) Structural analysis of bovine pancreatic thread protein. J Protein Chem, 9 (5). pp. 623-32. ISSN 0277-8033 (Print)0277-8033 (Linking)

Carmel, G., Leichus, B., Cheng, X., Patterson, S. D., Mirza, U., Chait, B. T., Kuret, J. (1994) Expression, purification, crystallization, and preliminary x-ray analysis of casein kinase-1 from Schizosaccharomyces pombe. J Biol Chem, 269 (10). pp. 7304-9. ISSN 0021-9258 (Print)

Choe, L., D'Ascenzo, M., Relkin, N. R., Pappin, D., Ross, P., Williamson, B., Guertin, S., Pribil, P., Lee, K. H. (2007) 8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease. Proteomics, 7 (20). pp. 3651-60. ISSN 1615-9853 (Print)1615-9853 (Linking)

E

Enikolopov, G., Guillermier, C., Wang, M., Trakimas, L., Steinhauser, M. L., Lechene, C. (2014) Brain stem cell division and maintenance studied using multi-isotope imaging mass spectrometry (MIMS). Surface and Interface Analysis, 46 (S1). pp. 140-143. ISSN 01422421

F

Fonseca, F. V., Ravi, K., Wiseman, D., Tummala, M., Harmon, C., Ryzhov, V., Fineman, J. R., Black, S. M. (2010) Mass spectroscopy and molecular modeling predict endothelial nitric oxide synthase dimer collapse by hydrogen peroxide through zinc tetrathiolate metal-binding site disruption. DNA and Cell Biology, 29 (3). pp. 149-160.

G

Gerbasi, V. R., Preall, J. B., Golden, D. E., Powell, D. W., Cummins, T. D., Sontheimer, E. J. (2011) Blanks, a nuclear siRNA/dsRNA-binding complex component, is required for Drosophila spermiogenesis. Proceedings of the National Academy of Sciences of the United States of America, 108 (8). pp. 3204-3209. ISSN 00278424 (ISSN)

Gut, I. G., Jeffery, W. A., Pappin, D. J. C., Beck, S. (1997) Analysis of DNA by 'charge tagging' and matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry, 11 (1). pp. 43-50. ISSN 09514198 (ISSN)

H

Hampton, B. S., Marshak, D. R., Burgess, W. H. (1992) Structural and functional characterization of full-length heparin-binding growth associated molecule. Mol Biol Cell, 3 (1). pp. 85-93. ISSN 1059-1524 (Print)1059-1524 (Linking)

Hanley, S. Z., Pappin, D. J., Rahman, D., White, A. J., Elborough, K. M., Slabas, A. R. (1999) Re-evaluation of the primary structure of Ralstonia eutropha phasin and implications for polyhydroxyalkanoic acid granule binding. FEBS Letters, 447 (1). pp. 99-105. ISSN 0014-5793 (Print)0014-5793 (Linking)

Hinton, S. D., Myers, M. P., Roggero, V. R., Allison, L. A., Tonks, N. K. (2010) The pseudophosphatase MK-STYX interacts with G3BP and decreases stress granule formation. Biochemical Journal, 427. pp. 349-357. ISSN 0264-6021

Honey, S., Schneider, B. L., Schieltz, D. M., Yates, J. R., Futcher, B. (2001) A novel multiple affinity purification tag and its use in identification of proteins associated with a cyclin-CDK complex. Nucleic Acids Res, 29 (4). E24. ISSN 1362-4962 (Electronic)

Hoss, M., Robins, P., Naven, T. J., Pappin, D. J., Sgouros, J., Lindahl, T. (1999) A human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein. EMBO Journal, 18 (13). pp. 3868-75. ISSN 0261-4189 (Print)0261-4189 (Linking)

K

Kalkum, Markus, Lyon, Gholson J., Chait, Brian T. (2003) Detection of secreted peptides by using hypothesis-driven multistage mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America, 100 (5). pp. 2795-2800. ISSN 0027-8424

Kirchner, M., Renard, B. Y., Kothe, U., Pappin, D. J., Hamprecht, F. A., Steen, H., Steen, J. A. J. (2010) Computational protein profile similarity screening for quantitative mass spectrometry experiments. Bioinformatics, 26 (1). pp. 77-83. ISSN 1367-4803

Kuhn, E., Whiteaker, J. R., Mani, D. R., Jackson, A. M., Zhao, L., Pope, M. E., Smith, D., Rivera, K. D., Anderson, N. L., Skates, S. J., Pearson, T. W., Paulovich, A. G., Carr, S. A. (2012) Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma. Molecular & Cellular Proteomics, 11 (6). ISSN 1535-9476

M

Marshak, D. R., Fraser, B. A. (1990) Characterization of Synthetic Polypeptides by Mass Spectrometry. In: High performance liquid chromatography in biotechnology. Wiley-Liss, New York, pp. 531-550.

O

O'Gara, M., Adams, G. M., Gong, W., Kobayashi, R., Blumenthal, R. M., Cheng, X. (1997) Expression, purification, mass spectrometry, crystallization and multiwavelength anomalous diffraction of selenomethionyl PvuII DNA methyltransferase (cytosine-N4-specific). European Journal of Biochemistry , 247 (3). pp. 1009-18. ISSN 0014-2956 (Print)

P

Pappin, D. J. (2003) Peptide mass fingerprinting using MALDI-TOF mass spectrometry. Methods in Molecular Biology, 211. pp. 211-9. ISSN 1940-6029 (Electronic)1064-3745 (Linking)

Pappin, D. J. (1997) Peptide mass fingerprinting using MALDI-TOF mass spectrometry. Methods in molecular biology (Clifton, N.J.), 64. pp. 165-173. ISSN 10643745 (ISSN)

Pappin, D. J. (2012) Talk from Darryl Pappin at the Cold Spring Harbor Laboratory In-House Symposium (2012). [Video] (Unpublished)

Pappin, D. J. C., Hojrup, P., Bleasby, A. J. (1993) Rapid identification of proteins by peptide-mass fingerprinting. Current Biology, 3 (6). pp. 327-332. ISSN 09609822 (ISSN)

Pappin, D. J. C., Rahman, D., Hansen, H. F., Bartlet-Jones, M., Jeffery, W., Bleasby, A. J. (1996) Chemistry, Mass Spectrometry and Peptide-Mass Databases: Evolution of Methods for the Rapid Identification and Mapping of Cellular Proteins. In: Mass Spectrometry in the Biological Sciences. Humana Press, pp. 135-150. ISBN 978-1-4612-6671-6

Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20 (18). pp. 3551-67. ISSN 0173-0835 (Print)0173-0835 (Linking)

R

Ragno, S., Romano, M., Howell, S., Pappin, D. J., Jenner, P. J., Colston, M. J. (2001) Changes in gene expression in macrophages infected with Mycobacterium tuberculosis: a combined transcriptomic and proteomic approach. Immunology, 104 (1). pp. 99-108. ISSN 0019-2805 (Print)0019-2805 (Linking)

Rasko, T., Der, A., Klement, E., Slaska-Kiss, K., Posfai, E., Medzihradszky, K. F., Marshak, D. R., Roberts, R. J. , Kiss, A. (2010) BspRI restriction endonuclease: cloning, expression in Escherichia coli and sequential cleavage mechanism. Nucleic Acids Res. ISSN 1362-4962 (Electronic) 0305-1048 (Linking)

Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., Pappin, D. J. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics, 3 (12). pp. 1154-69. ISSN 1535-9476 (Print)1535-9476 (Linking)

S

Smirnov, I. P., Zhu, X., Taylor, T., Huang, Y., Ross, P., Papayanopoulos, I. A., Martin, S. A., Pappin, D. J. (2004) Suppression of alpha-cyano-4-hydroxycinnamic acid matrix clusters and reduction of chemical noise in MALDI-TOF mass spectrometry. Anal Chem, 76 (10). pp. 2958-65. ISSN 0003-2700 (Print)0003-2700 (Linking)

Spengler, B., Luetzenkirchen, F., Metzger, S., Chaurand, P., Kaufmann, R., Jeffery, W., Bartlet-Jones, M., Pappin, D. J. C. (1997) Peptide sequencing of charged derivatives by postsource decay MALDI mass spectrometry. International Journal of Mass Spectrometry and Ion Processes, 169-17. pp. 127-140. ISSN 01681176 (ISSN)

V

van Ham, M., van Lith, M., Lillemeier, B., Tjin, E., Gruneberg, U., Rahman, D., Pastoors, L., van Meijgaarden, K., Roucard, C., Trowsdale, J., Ottenhoff, T., Pappin, D., Neefjes, J. (2000) Modulation of the major histocompatibility complex class II-associated peptide repertoire by human histocompatibility leukocyte antigen (HLA)-DO. J Exp Med, 191 (7). pp. 1127-36. ISSN 0022-1007 (Print)0022-1007 (Linking)

W

Wu, C., Liu, T., Chen, W., Oka, S., Fu, C. X., Jain, M. R., Parrott, A. M., Baykal, A. T., Sadoshima, J., Li, H. (2010) Redox Regulatory Mechanism of Transnitrosylation by Thioredoxin. Molecular & Cellular Proteomics, 9 (10). pp. 2262-2275. ISSN 1535-9476

Wu, Y., Egerton, G., Pappin, D. J., Harrison, R. A., Wilkinson, M. C., Underwood, A., Bianco, A. E. (2004) The Secreted Larval Acidic Proteins (SLAPs) of Onchocerca spp. are encoded by orthologues of the alt gene family of Brugia malayi and have host protective potential. Mol Biochem Parasitol, 134 (2). pp. 213-24. ISSN 0166-6851 (Print)0166-6851 (Linking)

Z

Zhang, Y., Wolf-Yadlin, A., Ross, P. L., Pappin, D. J., Rush, J., Lauffenburger, D. A., White, F. M. (2005) Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Mol Cell Proteomics, 4 (9). pp. 1240-50. ISSN 1535-9476 (Print)1535-9476 (Linking)

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